AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008530.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008530.01.T01 MTR_5g010470 62.181 706 197 18 1 659 1 683 0.0 693
MsG0280008530.01.T01 MTR_7g115550 94.933 375 18 1 4 378 8 381 0.0 678
MsG0280008530.01.T01 MTR_7g115550 85.152 330 31 3 338 657 405 726 1.69e-175 526
MsG0280008530.01.T01 MTR_7g115550 94.933 375 18 1 4 378 8 381 0.0 671
MsG0280008530.01.T01 MTR_7g115550 85.285 333 31 3 338 660 405 729 0.0 534
MsG0280008530.01.T01 MTR_7g061330 38.095 105 64 1 4 107 62 166 5.29e-15 79.0
MsG0280008530.01.T01 MTR_7g061330 31.008 129 78 2 4 132 114 231 4.54e-11 66.2
MsG0280008530.01.T01 MTR_7g461410 38.095 105 64 1 4 107 62 166 5.29e-15 79.0
MsG0280008530.01.T01 MTR_7g461410 31.008 129 78 2 4 132 114 231 4.54e-11 66.2
MsG0280008530.01.T01 MTR_7g061330 38.095 105 64 1 4 107 26 130 6.24e-15 78.6
MsG0280008530.01.T01 MTR_7g061330 31.008 129 78 2 4 132 78 195 5.32e-11 65.9
MsG0280008530.01.T01 MTR_8g468380 34.021 97 64 0 3 99 22 118 6.16e-13 71.6
MsG0280008530.01.T01 MTR_3g110028 34.286 105 68 1 4 107 34 138 1.19e-12 71.6
MsG0280008530.01.T01 MTR_3g110028 36.471 85 54 0 4 88 86 170 2.92e-12 70.5
MsG0280008530.01.T01 MTR_5g038910 33.945 109 68 1 3 111 26 130 1.37e-12 70.9
MsG0280008530.01.T01 MTR_5g038910 33.945 109 68 1 3 111 26 130 1.82e-12 70.1
MsG0280008530.01.T01 MTR_1g026870 34.343 99 64 1 4 101 34 132 2.06e-12 71.2
MsG0280008530.01.T01 MTR_7g451170 37.647 85 53 0 4 88 192 276 5.31e-12 68.6
MsG0280008530.01.T01 MTR_4g088015 35.294 85 55 0 4 88 222 306 1.42e-11 67.4
MsG0280008530.01.T01 MTR_7g035350 33.981 103 65 1 5 104 227 329 1.60e-11 67.4
MsG0280008530.01.T01 MTR_7g037260 36.471 85 54 0 4 88 146 230 3.05e-11 65.9
MsG0280008530.01.T01 MTR_4g105660 37.647 85 53 0 4 88 181 265 3.52e-11 66.2
MsG0280008530.01.T01 MTR_6g027340 34.783 92 60 0 6 97 19 110 3.91e-11 63.5
MsG0280008530.01.T01 MTR_5g010650 37.349 83 52 0 6 88 113 195 5.40e-11 65.9
MsG0280008530.01.T01 MTR_6g027360 35.052 97 63 0 1 97 76 172 6.72e-11 64.3
MsG0280008530.01.T01 MTR_1g057980 32.258 93 63 0 4 96 81 173 6.98e-11 64.3
MsG0280008530.01.T01 MTR_6g027370 31.959 97 66 0 4 100 100 196 9.11e-11 64.3
MsG0280008530.01.T01 MTR_6g080360 34.375 96 62 1 6 101 482 576 9.40e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008530.01.T01 AT1G09770 84.840 376 55 2 4 378 8 382 0.0 630
MsG0280008530.01.T01 AT1G09770 58.308 331 116 5 338 656 406 726 6.50e-102 330
MsG0280008530.01.T01 AT5G02320 37.143 105 65 1 4 107 76 180 1.40e-14 77.4
MsG0280008530.01.T01 AT5G02320 34.118 85 56 0 4 88 128 212 6.60e-11 65.9
MsG0280008530.01.T01 AT5G02320 37.143 105 65 1 4 107 76 180 1.40e-14 77.4
MsG0280008530.01.T01 AT5G02320 34.118 85 56 0 4 88 128 212 6.60e-11 65.9
MsG0280008530.01.T01 AT5G02320 37.143 105 65 1 4 107 16 120 1.52e-14 77.0
MsG0280008530.01.T01 AT5G02320 34.118 85 56 0 4 88 68 152 9.09e-11 65.1
MsG0280008530.01.T01 AT3G18100 34.375 96 63 0 4 99 547 642 6.17e-14 75.9
MsG0280008530.01.T01 AT3G18100 36.082 97 60 2 6 101 498 593 1.89e-11 67.8
MsG0280008530.01.T01 AT3G18100 34.375 96 63 0 4 99 499 594 1.01e-13 75.1
MsG0280008530.01.T01 AT3G18100 36.082 97 60 2 6 101 450 545 3.26e-11 67.0
MsG0280008530.01.T01 AT3G18100 34.375 96 63 0 4 99 386 481 1.13e-13 75.1
MsG0280008530.01.T01 AT3G18100 36.082 97 60 2 6 101 337 432 3.62e-11 67.0
MsG0280008530.01.T01 AT3G09370 36.190 105 66 1 4 107 84 188 1.17e-13 74.3
MsG0280008530.01.T01 AT3G09370 36.190 105 66 1 4 107 79 183 1.18e-13 74.3
MsG0280008530.01.T01 AT3G18100 34.375 96 63 0 4 99 334 429 1.47e-13 74.3
MsG0280008530.01.T01 AT3G18100 36.082 97 60 2 6 101 285 380 4.85e-11 66.2
MsG0280008530.01.T01 AT5G11510 37.374 99 61 1 4 101 30 128 1.56e-13 74.7
MsG0280008530.01.T01 AT5G11510 37.374 99 61 1 4 101 30 128 1.56e-13 74.7
MsG0280008530.01.T01 AT5G11510 37.374 99 61 1 4 101 30 128 1.56e-13 74.7
MsG0280008530.01.T01 AT3G09370 36.190 105 66 1 4 107 92 196 1.59e-13 73.9
MsG0280008530.01.T01 AT5G11510 37.374 99 61 1 4 101 30 128 2.49e-13 73.9
MsG0280008530.01.T01 AT5G11510 37.374 99 61 1 4 101 30 128 2.98e-13 73.6
MsG0280008530.01.T01 AT4G18770 38.824 85 52 0 4 88 218 302 8.47e-13 71.2
MsG0280008530.01.T01 AT4G32730 35.354 99 63 1 4 101 36 134 1.62e-12 71.6
MsG0280008530.01.T01 AT4G32730 35.354 99 63 1 4 101 36 134 1.62e-12 71.6
MsG0280008530.01.T01 AT4G32730 35.354 99 63 1 4 101 36 134 1.62e-12 71.6
MsG0280008530.01.T01 AT4G32730 35.354 99 63 1 4 101 36 134 1.62e-12 71.6
MsG0280008530.01.T01 AT4G32730 35.354 99 63 1 4 101 36 134 2.72e-12 70.5
MsG0280008530.01.T01 AT4G33450 32.990 97 65 0 4 100 20 116 5.76e-12 67.0
MsG0280008530.01.T01 AT2G02820 30.579 121 70 1 3 109 30 150 8.42e-12 68.6
MsG0280008530.01.T01 AT2G02820 30.579 121 70 1 3 109 30 150 1.20e-11 67.8
MsG0280008530.01.T01 AT4G00540 37.500 112 61 2 4 106 47 158 1.33e-11 67.4
MsG0280008530.01.T01 AT4G00540 37.500 112 61 2 4 106 45 156 1.80e-11 67.4
MsG0280008530.01.T01 AT2G02820 30.579 121 70 1 3 109 30 150 1.86e-11 66.6
MsG0280008530.01.T01 AT1G14350 31.959 97 66 0 3 99 25 121 2.41e-11 67.0
MsG0280008530.01.T01 AT1G14350 31.959 97 66 0 3 99 25 121 2.41e-11 67.0
MsG0280008530.01.T01 AT5G40360 35.294 85 55 0 4 88 159 243 2.48e-11 66.2
MsG0280008530.01.T01 AT5G17800 39.080 87 53 0 2 88 92 178 3.07e-11 65.9
MsG0280008530.01.T01 AT1G17950 31.313 99 68 0 2 100 4 102 4.02e-11 64.3
MsG0280008530.01.T01 AT3G27920 31.776 107 68 2 4 107 17 121 5.92e-11 63.5
MsG0280008530.01.T01 AT4G38620 31.655 139 84 5 4 138 15 146 7.49e-11 63.9

Find 195 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTCTTTCCAACTGTTTC+TGG 0.013419 2:+33549911 None:intergenic
CTGTTGCAATTGTTGATTTA+TGG 0.112818 2:-33547749 MsG0280008530.01.T01:three_prime_UTR
TTCTGGGTCATTCAGCTTCT+TGG 0.153986 2:+33549928 None:intergenic
TTTCTTTCAATTATTGTTAA+TGG 0.166886 2:-33547889 MsG0280008530.01.T01:three_prime_UTR
ATTTCATAACAGCAGCTTTC+AGG 0.225007 2:+33550719 None:intergenic
CAGCATCTCTGGAGCTTATT+AGG 0.228626 2:-33549141 MsG0280008530.01.T01:CDS
TTGGGTGTCTGTGGATAATT+AGG 0.241982 2:+33549758 None:intergenic
CATGATGGAAGCTGAAAATT+TGG 0.248037 2:-33549675 MsG0280008530.01.T01:CDS
AAAGGAGCTTCCAGCCTTAC+TGG 0.273790 2:-33549038 MsG0280008530.01.T01:CDS
GTTCTCTGAGGAGTTCTTAA+AGG 0.283026 2:+33549722 None:intergenic
AAAGCTGCTGTTATGAAATA+TGG 0.287568 2:-33550715 MsG0280008530.01.T01:CDS
GAATTGGTTGCATCACTATC+TGG 0.302904 2:+33549311 None:intergenic
GGTCGCGCAGGCTTCGATTC+AGG 0.310060 2:+33550376 None:intergenic
AGTCCACTCAGTCTTCTTAA+TGG 0.314486 2:+33550603 None:intergenic
GTTTGAGAAAAGGCCTCCTT+TGG 0.314999 2:-33550125 MsG0280008530.01.T01:CDS
CCCTGTCATAGAAGATTATC+AGG 0.315605 2:-33548927 MsG0280008530.01.T01:CDS
ATGGATCTCAACTAATTAGT+AGG 0.316459 2:-33547730 MsG0280008530.01.T01:three_prime_UTR
CCATTGCCTCACGAAGATAC+TGG 0.317289 2:+33548198 None:intergenic
ATCTCTTTCCAACTGTTTCT+GGG 0.330928 2:+33549912 None:intergenic
TCTTCAGCATCTTCTTGAAT+TGG 0.331097 2:+33549295 None:intergenic
ATCTCGTCGGCTTGCTCAAT+AGG 0.342238 2:+33549067 None:intergenic
TCAAGTTCTTCTATAGTAGT+AGG 0.344179 2:+33550052 None:intergenic
TAGGCCTCCTCCAGCATCTC+TGG 0.367513 2:-33549152 MsG0280008530.01.T01:CDS
TTTGTAGTTGTCTAGTTCCT+TGG 0.368196 2:-33547861 MsG0280008530.01.T01:three_prime_UTR
CAGAAATTCCGTTTGAGAAA+AGG 0.368252 2:-33550135 MsG0280008530.01.T01:CDS
GCTTGAGGAGATAGCAAATA+AGG 0.373696 2:-33548993 MsG0280008530.01.T01:CDS
CCTTGACGCCACTTGTGTTA+AGG 0.386161 2:-33550461 MsG0280008530.01.T01:CDS
TCTCGTCGGCTTGCTCAATA+GGG 0.387795 2:+33549068 None:intergenic
AGGCCCATTTGCTGCTCGTT+TGG 0.388358 2:+33548955 None:intergenic
TCAGATTTCCGATCAAGAAT+TGG 0.389053 2:-33549867 MsG0280008530.01.T01:CDS
GCAGGCTTCGATTCAGGATT+CGG 0.393602 2:+33550382 None:intergenic
TATTACAAAACCAACTTTGA+AGG 0.393656 2:+33547798 None:intergenic
CCAAAATGAGCATAGGTGTT+TGG 0.397192 2:-33550762 None:intergenic
GGAATTGCATTTCATTATTG+TGG 0.401293 2:-33547684 MsG0280008530.01.T01:three_prime_UTR
AGGCTGCTGGGATTGATATA+AGG 0.409355 2:-33550195 MsG0280008530.01.T01:CDS
AGAGATGCTGGAGGAGGCCT+AGG 0.415805 2:+33549154 None:intergenic
CATGGTCTATCAAGTGTTGC+TGG 0.417267 2:-33548089 MsG0280008530.01.T01:CDS
GGATCCAAACGAGCAGCAAA+TGG 0.417377 2:-33548959 MsG0280008530.01.T01:CDS
TTGATAGACCATGTGTGTTA+CGG 0.418408 2:+33548099 None:intergenic
GCTACATATCAATGAAGATA+TGG 0.420115 2:-33549434 MsG0280008530.01.T01:CDS
TAAGGCAGCGGAGGAGGAAA+AGG 0.424744 2:-33550177 MsG0280008530.01.T01:CDS
TGATAGACCATGTGTGTTAC+GGG 0.426495 2:+33548100 None:intergenic
TTGGATGAAATTGCCAAGTT+GGG 0.429250 2:-33549848 MsG0280008530.01.T01:CDS
AGCTTTCAGGATTTCATCCT+CGG 0.436489 2:+33550732 None:intergenic
CAGTATCTTCGTGAGGCAAT+GGG 0.437430 2:-33548197 MsG0280008530.01.T01:CDS
ATTGGATGAAATTGCCAAGT+TGG 0.444138 2:-33549849 MsG0280008530.01.T01:CDS
AAGAACTTGAGGGGAAAAGA+AGG 0.444403 2:-33550039 MsG0280008530.01.T01:CDS
GCAAATAAGGAGAGAGAGAA+AGG 0.446065 2:-33548980 MsG0280008530.01.T01:CDS
CTAATAAGCTCCAGAGATGC+TGG 0.447893 2:+33549142 None:intergenic
ATCCTCTTCAATCTTCTCCT+CGG 0.449369 2:+33549270 None:intergenic
AAGAGAGAATTGAAGGCTGC+TGG 0.451049 2:-33550208 MsG0280008530.01.T01:CDS
TCCTGATAATCTTCTATGAC+AGG 0.451422 2:+33548926 None:intergenic
TCATACTCATCCATATCAAC+AGG 0.454291 2:+33550349 None:intergenic
ACCCACAATGGTATCACTAA+TGG 0.455710 2:+33550522 None:intergenic
AGAAGAAGAGGCACGGCAGA+AGG 0.457675 2:-33549218 MsG0280008530.01.T01:CDS
TCCCCTGGACGCAATTTCCT+AGG 0.458724 2:+33550412 None:intergenic
AAAGGAGTCAAGGCTTGGTT+GGG 0.461730 2:+33549740 None:intergenic
TGCAGAGAGGCAAGATGCCC+CGG 0.470266 2:-33549966 MsG0280008530.01.T01:CDS
GAATTGCATTTCATTATTGT+GGG 0.471151 2:-33547683 MsG0280008530.01.T01:three_prime_UTR
CTGAAAATTTGGCCAGGCTG+AGG 0.471566 2:-33549664 MsG0280008530.01.T01:CDS
TTCTTAAAGGAGTCAAGGCT+TGG 0.471836 2:+33549735 None:intergenic
GTCTAAATGCCCTTCAAAGT+TGG 0.473158 2:-33547808 MsG0280008530.01.T01:three_prime_UTR
TGGCATGCAGAATAGCAGCC+GGG 0.473211 2:+33549948 None:intergenic
TTGATATAAGGCAGCGGAGG+AGG 0.474103 2:-33550183 MsG0280008530.01.T01:CDS
AGCCAACCGAGCACATGCTT+CGG 0.476372 2:+33550312 None:intergenic
TGATGTTGCTGATGAGGATA+GGG 0.479449 2:-33550095 MsG0280008530.01.T01:CDS
AATTTCATCCAATTCTTGAT+CGG 0.479560 2:+33549859 None:intergenic
GCGACCCGATCCTGTTGATA+TGG 0.481942 2:-33550359 MsG0280008530.01.T01:CDS
CCAGTATCTTCGTGAGGCAA+TGG 0.484875 2:-33548198 MsG0280008530.01.T01:CDS
TGTCTGAGACTCCCTCAGCC+TGG 0.484905 2:+33549652 None:intergenic
AACGATCAAAAGTCATTCAA+AGG 0.485643 2:-33549183 MsG0280008530.01.T01:CDS
ATTACAAAACCAACTTTGAA+GGG 0.488031 2:+33547799 None:intergenic
TCCTCTTCAATCTTCTCCTC+GGG 0.488427 2:+33549271 None:intergenic
CTCCTTTCTTATCATCTCGT+CGG 0.493278 2:+33549054 None:intergenic
TCATTCAAAGGGAACTTCCT+AGG 0.493709 2:-33549171 MsG0280008530.01.T01:CDS
ACGAGTAGCACTGCTGCCTT+CGG 0.495690 2:+33549790 None:intergenic
TTCCGAAGCATGTGCTCGGT+TGG 0.496711 2:-33550314 MsG0280008530.01.T01:CDS
TCTTCTATGACAGGGATAGC+AGG 0.496725 2:+33548935 None:intergenic
GTCTCCGTCAGCTCTTATCA+AGG 0.499862 2:+33549114 None:intergenic
TTGTCATGCTCCAGTAAGGC+TGG 0.499885 2:+33549028 None:intergenic
AGGAGATCATGTAGATCTGT+TGG 0.501729 2:-33547705 MsG0280008530.01.T01:three_prime_UTR
TGCTTTCCGAAGCATGTGCT+CGG 0.502006 2:-33550318 MsG0280008530.01.T01:CDS
GTGAGAAGTAAGCTGGATGA+TGG 0.502979 2:-33548023 MsG0280008530.01.T01:CDS
CTCATCCATATCAACAGGAT+CGG 0.503902 2:+33550354 None:intergenic
AAGTAAGCTGGATGATGGGA+AGG 0.506469 2:-33548018 MsG0280008530.01.T01:CDS
ATAGCATCTCCTTTACTAGC+TGG 0.506651 2:+33549698 None:intergenic
AGAGGATATGTCTGATAGAA+TGG 0.507303 2:-33549254 MsG0280008530.01.T01:CDS
AGCTCCAGAGATGCTGGAGG+AGG 0.508047 2:+33549148 None:intergenic
GATGATTCGACTTGAGAAGA+AGG 0.511403 2:-33547991 MsG0280008530.01.T01:CDS
TGATAGAATGGCTAGAGAAA+AGG 0.511992 2:-33549242 MsG0280008530.01.T01:CDS
ATTGCTGCCCACAAGGTCAC+TGG 0.512710 2:+33549820 None:intergenic
TTGGCATGCAGAATAGCAGC+CGG 0.514383 2:+33549947 None:intergenic
TTTGAGAAAAGGCCTCCTTT+GGG 0.515050 2:-33550124 MsG0280008530.01.T01:CDS
CAGAGAACACCAGCTAGTAA+AGG 0.515217 2:-33549707 MsG0280008530.01.T01:CDS
TGCAGATTTGCAAACGAGTA+GGG 0.518174 2:+33550666 None:intergenic
CATTGCCTCACGAAGATACT+GGG 0.519621 2:+33548199 None:intergenic
TGGGTGTCTGTGGATAATTA+GGG 0.519886 2:+33549759 None:intergenic
TTGATGTTGCTGATGAGGAT+AGG 0.524642 2:-33550096 MsG0280008530.01.T01:CDS
TCGGCTTGCTCAATAGGGGT+TGG 0.524733 2:+33549073 None:intergenic
TGAAAATTTGGCCAGGCTGA+GGG 0.525084 2:-33549663 MsG0280008530.01.T01:CDS
GACCCTAGGAAATTGCGTCC+AGG 0.525314 2:-33550415 MsG0280008530.01.T01:CDS
TGGATCTCAACTAATTAGTA+GGG 0.526169 2:-33547729 MsG0280008530.01.T01:three_prime_UTR
CTGCAGATTTGCAAACGAGT+AGG 0.526600 2:+33550665 None:intergenic
AGCATTGTCATGCTCCAGTA+AGG 0.527412 2:+33549024 None:intergenic
ACCATTAGTGATACCATTGT+GGG 0.527710 2:-33550523 MsG0280008530.01.T01:CDS
CAAGTTCTTCTATAGTAGTA+GGG 0.528361 2:+33550053 None:intergenic
TAAAGGAGTCAAGGCTTGGT+TGG 0.528607 2:+33549739 None:intergenic
TGAGAATGTGAGAAGTAAGC+TGG 0.529343 2:-33548030 MsG0280008530.01.T01:CDS
GCTTGCTCAATAGGGGTTGG+TGG 0.531592 2:+33549076 None:intergenic
CACTCAGTCTTCTTAATGGA+AGG 0.532258 2:+33550607 None:intergenic
TCATCCATATCAACAGGATC+GGG 0.534614 2:+33550355 None:intergenic
ACCCTAGGAAATTGCGTCCA+GGG 0.536757 2:-33550414 MsG0280008530.01.T01:CDS
GATCCAAACGAGCAGCAAAT+GGG 0.542547 2:-33548958 MsG0280008530.01.T01:CDS
AGAGAGAATTGAAGGCTGCT+GGG 0.549517 2:-33550207 MsG0280008530.01.T01:CDS
TGATCGGAAATCTGAGGTGG+TGG 0.551298 2:+33549875 None:intergenic
AGCCGACGAGATGATAAGAA+AGG 0.552168 2:-33549056 MsG0280008530.01.T01:CDS
GAAAAGAAGGATTGATGTTG+AGG 0.552508 2:-33550026 MsG0280008530.01.T01:CDS
GGTTATGCCAGTGACCTTGT+GGG 0.556103 2:-33549827 MsG0280008530.01.T01:CDS
TGAGAAAGCAAGACGTTGCA+AGG 0.556741 2:-33549997 MsG0280008530.01.T01:CDS
GGGTTATGCCAGTGACCTTG+TGG 0.560009 2:-33549828 MsG0280008530.01.T01:CDS
GGATTCGGATCAATCTCCCC+TGG 0.561665 2:+33550397 None:intergenic
CCCCTGGACGCAATTTCCTA+GGG 0.562986 2:+33550413 None:intergenic
TAGAATCTCAGTAGCATCCA+AGG 0.563694 2:+33547844 None:intergenic
AGAAACAGCTTGAGGAAGCA+AGG 0.565360 2:-33550252 MsG0280008530.01.T01:CDS
TCAACAGGATCGGGTCGCGC+AGG 0.566355 2:+33550364 None:intergenic
ACGATCAAAAGTCATTCAAA+GGG 0.567785 2:-33549182 MsG0280008530.01.T01:CDS
AGGAGTTCTTAAAGGAGTCA+AGG 0.570143 2:+33549730 None:intergenic
ACTACTATAGAAGAACTTGA+GGG 0.571318 2:-33550049 MsG0280008530.01.T01:CDS
TAAAGGAGATGCTATCATGA+TGG 0.573963 2:-33549690 MsG0280008530.01.T01:CDS
CTGAATGACCCAGAAACAGT+TGG 0.574442 2:-33549920 MsG0280008530.01.T01:CDS
TCTCAACTAATTAGTAGGGT+AGG 0.578245 2:-33547725 MsG0280008530.01.T01:three_prime_UTR
TTACTAGCTGGTGTTCTCTG+AGG 0.578802 2:+33549710 None:intergenic
TAGAGAAAAGGCAGAAGAAG+AGG 0.579560 2:-33549230 MsG0280008530.01.T01:CDS
ATGAACCTGGTGATGACCCT+AGG 0.580871 2:-33550429 MsG0280008530.01.T01:CDS
TTATTTGCTATCTCCTCAAG+CGG 0.583374 2:+33548995 None:intergenic
GTCACTGGCATAACCCAACT+TGG 0.585958 2:+33549835 None:intergenic
AAGGTTACATTACTCACGCA+AGG 0.586053 2:-33547972 MsG0280008530.01.T01:CDS
GTAAAGCTCGTTGGTATGAG+TGG 0.588526 2:-33550636 MsG0280008530.01.T01:CDS
AACTCCTTGATAAGAGCTGA+CGG 0.589304 2:-33549118 MsG0280008530.01.T01:CDS
AAGGCTTGGTTGGGTGTCTG+TGG 0.589342 2:+33549749 None:intergenic
CCTGATAATCTTCTATGACA+GGG 0.589597 2:+33548927 None:intergenic
GACTGAGTGGACTCGAGAAG+AGG 0.592125 2:-33550593 MsG0280008530.01.T01:CDS
TGCTTCAACAAAATCCTCGA+GGG 0.592155 2:+33548160 None:intergenic
CCTTAACACAAGTGGCGTCA+AGG 0.592424 2:+33550461 None:intergenic
CTCCTTCGCAGTGTCTTGAA+CGG 0.594673 2:-33550495 MsG0280008530.01.T01:CDS
TGCTGATGAGGATAGGGAGG+TGG 0.595277 2:-33550089 MsG0280008530.01.T01:CDS
CAGAACGGTGTAAAGCTCGT+TGG 0.595953 2:-33550645 MsG0280008530.01.T01:CDS
AGTGTTGCCAAAATGAGCAT+AGG 0.596521 2:-33550769 None:intergenic
AACCATTAGTGATACCATTG+TGG 0.597390 2:-33550524 MsG0280008530.01.T01:CDS
TGAGAAGTAAGCTGGATGAT+GGG 0.598085 2:-33548022 MsG0280008530.01.T01:CDS
TACTACTATAGAAGAACTTG+AGG 0.598439 2:-33550050 MsG0280008530.01.T01:CDS
AAAAGGCAGAAGAAGAGGCA+CGG 0.599691 2:-33549225 MsG0280008530.01.T01:CDS
TGAGTTCATTGCTGCCCACA+AGG 0.602663 2:+33549813 None:intergenic
CTAATGGTTCTCCACTGAGT+AGG 0.603402 2:+33550538 None:intergenic
TGGAAGCTGAAAATTTGGCC+AGG 0.607474 2:-33549670 MsG0280008530.01.T01:CDS
GCTCGGTTGGCTAACACGAA+AGG 0.608258 2:-33550301 MsG0280008530.01.T01:CDS
AGCGGAGGAGGAAAAGGAGA+GGG 0.609580 2:-33550171 MsG0280008530.01.T01:CDS
CAATGCTAAGTATCCGCTTG+AGG 0.613956 2:-33549008 MsG0280008530.01.T01:CDS
AATTTCCTAGGGTCATCACC+AGG 0.619740 2:+33550424 None:intergenic
CAGCGGAGGAGGAAAAGGAG+AGG 0.619802 2:-33550172 MsG0280008530.01.T01:CDS
CTGGGATTGATATAAGGCAG+CGG 0.621106 2:-33550189 MsG0280008530.01.T01:CDS
GTTATCGTCCTTAACACAAG+TGG 0.622208 2:+33550453 None:intergenic
CGAAGGAGTACGACCCACAA+TGG 0.624367 2:+33550510 None:intergenic
CCCTAGGAAATTGCGTCCAG+GGG 0.631019 2:-33550413 MsG0280008530.01.T01:CDS
CTCGTCGGCTTGCTCAATAG+GGG 0.633774 2:+33549069 None:intergenic
TTTGATACCCGTAACACACA+TGG 0.638610 2:-33548107 MsG0280008530.01.T01:CDS
GGCATGCAGAATAGCAGCCG+GGG 0.639810 2:+33549949 None:intergenic
AAGGACGATAACTATGAACC+TGG 0.641325 2:-33550442 MsG0280008530.01.T01:CDS
TGTTGCTGATGAGGATAGGG+AGG 0.645550 2:-33550092 MsG0280008530.01.T01:CDS
GCAACATCAAAATAACCCAA+AGG 0.645993 2:+33550109 None:intergenic
AGAAGATGCTGAAGAGCCCG+AGG 0.646686 2:-33549287 MsG0280008530.01.T01:CDS
CTACTATAGAAGAACTTGAG+GGG 0.654103 2:-33550048 MsG0280008530.01.T01:CDS
GCCCGAGGAGAAGATTGAAG+AGG 0.654306 2:-33549272 MsG0280008530.01.T01:CDS
AACAATAATTGAAAGAAACA+CGG 0.658402 2:+33547894 None:intergenic
AATTCTTGATCGGAAATCTG+AGG 0.665249 2:+33549869 None:intergenic
AGCTAGGGAGAAACAGCTTG+AGG 0.665565 2:-33550260 MsG0280008530.01.T01:CDS
TACCGTTCAAGACACTGCGA+AGG 0.666095 2:+33550493 None:intergenic
AGGTTACATTACTCACGCAA+GGG 0.667391 2:-33547971 MsG0280008530.01.T01:CDS
GGCAGCAATGAACTCACCGA+AGG 0.667861 2:-33549806 MsG0280008530.01.T01:CDS
CTAAGCTTACGCCTACTCAG+TGG 0.671805 2:-33550549 MsG0280008530.01.T01:CDS
TCGTTTGCAAATCTGCAGAA+CGG 0.675444 2:-33550660 MsG0280008530.01.T01:CDS
TCTTGATCGGAAATCTGAGG+TGG 0.678038 2:+33549872 None:intergenic
ACATCAAAATAACCCAAAGG+AGG 0.679868 2:+33550112 None:intergenic
CTTCCATTAAGAAGACTGAG+TGG 0.680364 2:-33550606 MsG0280008530.01.T01:CDS
TGAAGCCCAGTATCTTCGTG+AGG 0.688109 2:-33548204 MsG0280008530.01.T01:CDS
GTGCTTCAACAAAATCCTCG+AGG 0.688213 2:+33548159 None:intergenic
AGTATCTTCGTGAGGCAATG+GGG 0.691770 2:-33548196 MsG0280008530.01.T01:CDS
GGATTGATATAAGGCAGCGG+AGG 0.699913 2:-33550186 MsG0280008530.01.T01:CDS
ATAAGCTCCAGAGATGCTGG+AGG 0.701115 2:+33549145 None:intergenic
AACAGCTTGAGGAAGCAAGG+AGG 0.704973 2:-33550249 MsG0280008530.01.T01:CDS
TGATATGGATGAGTATGAGA+AGG 0.714958 2:-33550344 MsG0280008530.01.T01:CDS
TGTCATAGAAGATTATCAGG+AGG 0.727087 2:-33548924 MsG0280008530.01.T01:CDS
GCATGAAAATGATTCCCTCG+AGG 0.731393 2:-33548174 MsG0280008530.01.T01:CDS
CAAGGAATAAAATTGCAGAG+AGG 0.745082 2:-33549979 MsG0280008530.01.T01:CDS
AGGTGTTTGGACAAACACCG+AGG 0.789261 2:-33550749 MsG0280008530.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGCATAAAAATAAAATTAA+AGG + Chr2:33549519-33549538 None:intergenic 15.0%
!! ATTATAACTGAAAAAAAACA+AGG + Chr2:33549860-33549879 None:intergenic 15.0%
!! TTTCTTTCAATTATTGTTAA+TGG - Chr2:33550487-33550506 MsG0280008530.01.T01:CDS 15.0%
!! AACAATAATTGAAAGAAACA+CGG + Chr2:33550485-33550504 None:intergenic 20.0%
!! AAGTTTGTATTACTATCATT+CGG + Chr2:33550011-33550030 None:intergenic 20.0%
!! ATAATAATTAACAAGCAGTT+TGG + Chr2:33550034-33550053 None:intergenic 20.0%
! AATTTCATCCAATTCTTGAT+CGG + Chr2:33548520-33548539 None:intergenic 25.0%
! ATTACAAAACCAACTTTGAA+GGG + Chr2:33550580-33550599 None:intergenic 25.0%
! GAAATATGGTAAAAATCAGT+GGG - Chr2:33547675-33547694 MsG0280008530.01.T01:three_prime_UTR 25.0%
! GAATTGCATTTCATTATTGT+GGG - Chr2:33550693-33550712 MsG0280008530.01.T01:CDS 25.0%
! GATGCCAAGTAATTAATAAT+CGG + Chr2:33549680-33549699 None:intergenic 25.0%
! TAGGGAATAAATGTTGTAAA+AGG + Chr2:33549974-33549993 None:intergenic 25.0%
! TATTACAAAACCAACTTTGA+AGG + Chr2:33550581-33550600 None:intergenic 25.0%
! TGAAATATGGTAAAAATCAG+TGG - Chr2:33547674-33547693 MsG0280008530.01.T01:three_prime_UTR 25.0%
! TTGTCCGATTATTAATTACT+TGG - Chr2:33549673-33549692 MsG0280008530.01.T01:CDS 25.0%
!! ATGTGAATTTCCTTTTTCTT+AGG + Chr2:33548793-33548812 None:intergenic 25.0%
!! ATTTTTACATAAGATTCCAG+TGG + Chr2:33549742-33549761 None:intergenic 25.0%
!! TTTTATCTGTTGTTCTCAAT+AGG - Chr2:33550130-33550149 MsG0280008530.01.T01:CDS 25.0%
!!! AATTGCAACAGTTTTAAGTT+AGG + Chr2:33550618-33550637 None:intergenic 25.0%
AAAAAGCAAAAAGGAAAGCT+AGG - Chr2:33548100-33548119 MsG0280008530.01.T01:CDS 30.0%
AAAAGCAAAAAGGAAAGCTA+GGG - Chr2:33548101-33548120 MsG0280008530.01.T01:CDS 30.0%
AAAGCTGCTGTTATGAAATA+TGG - Chr2:33547661-33547680 MsG0280008530.01.T01:three_prime_UTR 30.0%
AACGATCAAAAGTCATTCAA+AGG - Chr2:33549193-33549212 MsG0280008530.01.T01:CDS 30.0%
AATATGCAACTAGCTCATAA+AGG + Chr2:33549808-33549827 None:intergenic 30.0%
ACAGAAAAAGAGAGAATTGA+AGG - Chr2:33548161-33548180 MsG0280008530.01.T01:CDS 30.0%
ACGATCAAAAGTCATTCAAA+GGG - Chr2:33549194-33549213 MsG0280008530.01.T01:CDS 30.0%
ACTACTATAGAAGAACTTGA+GGG - Chr2:33548327-33548346 MsG0280008530.01.T01:intron 30.0%
ATGAAGAAAAGCGAAGTAAA+AGG + Chr2:33549539-33549558 None:intergenic 30.0%
ATGGATCTCAACTAATTAGT+AGG - Chr2:33550646-33550665 MsG0280008530.01.T01:CDS 30.0%
CAAGTTCTTCTATAGTAGTA+GGG + Chr2:33548326-33548345 None:intergenic 30.0%
CATCTCCATAGTCAAATTTA+AGG + Chr2:33550063-33550082 None:intergenic 30.0%
CGAAAGGTAAAAAAGCAAAA+AGG - Chr2:33548091-33548110 MsG0280008530.01.T01:CDS 30.0%
GCTACATATCAATGAAGATA+TGG - Chr2:33548942-33548961 MsG0280008530.01.T01:CDS 30.0%
GGAATTGCATTTCATTATTG+TGG - Chr2:33550692-33550711 MsG0280008530.01.T01:CDS 30.0%
TACTACTATAGAAGAACTTG+AGG - Chr2:33548326-33548345 MsG0280008530.01.T01:intron 30.0%
TATGAGCTAGTTGCATATTA+TGG - Chr2:33549809-33549828 MsG0280008530.01.T01:CDS 30.0%
TCAAGTTCTTCTATAGTAGT+AGG + Chr2:33548327-33548346 None:intergenic 30.0%
TGACTCCTTAAATTTGACTA+TGG - Chr2:33550055-33550074 MsG0280008530.01.T01:CDS 30.0%
TGGATCTCAACTAATTAGTA+GGG - Chr2:33550647-33550666 MsG0280008530.01.T01:CDS 30.0%
!! ACTATCTGGTACTCATTTTT+AGG + Chr2:33549054-33549073 None:intergenic 30.0%
!! CTGTTGCAATTGTTGATTTA+TGG - Chr2:33550627-33550646 MsG0280008530.01.T01:CDS 30.0%
!!! TTATTTTGATGTTGCTGATG+AGG - Chr2:33548275-33548294 MsG0280008530.01.T01:intron 30.0%
AACCATTAGTGATACCATTG+TGG - Chr2:33547852-33547871 MsG0280008530.01.T01:three_prime_UTR 35.0%
AAGATTCCAGTGGTTTCAAA+GGG + Chr2:33549732-33549751 None:intergenic 35.0%
AATTCTTGATCGGAAATCTG+AGG + Chr2:33548510-33548529 None:intergenic 35.0%
ACATCAAAATAACCCAAAGG+AGG + Chr2:33548267-33548286 None:intergenic 35.0%
ACCATTAGTGATACCATTGT+GGG - Chr2:33547853-33547872 MsG0280008530.01.T01:three_prime_UTR 35.0%
AGAGGATATGTCTGATAGAA+TGG - Chr2:33549122-33549141 MsG0280008530.01.T01:CDS 35.0%
ATTGGATGAAATTGCCAAGT+TGG - Chr2:33548527-33548546 MsG0280008530.01.T01:intron 35.0%
ATTTCATAACAGCAGCTTTC+AGG + Chr2:33547660-33547679 None:intergenic 35.0%
CAAGGAATAAAATTGCAGAG+AGG - Chr2:33548397-33548416 MsG0280008530.01.T01:intron 35.0%
CAGAAATTCCGTTTGAGAAA+AGG - Chr2:33548241-33548260 MsG0280008530.01.T01:intron 35.0%
CCTGATAATCTTCTATGACA+GGG + Chr2:33549452-33549471 None:intergenic 35.0%
CTACTATAGAAGAACTTGAG+GGG - Chr2:33548328-33548347 MsG0280008530.01.T01:intron 35.0%
GAAAAGAAGGATTGATGTTG+AGG - Chr2:33548350-33548369 MsG0280008530.01.T01:intron 35.0%
GCAACATCAAAATAACCCAA+AGG + Chr2:33548270-33548289 None:intergenic 35.0%
TAAAGGAGATGCTATCATGA+TGG - Chr2:33548686-33548705 MsG0280008530.01.T01:intron 35.0%
TAAGATTCCAGTGGTTTCAA+AGG + Chr2:33549733-33549752 None:intergenic 35.0%
TCAGATTTCCGATCAAGAAT+TGG - Chr2:33548509-33548528 MsG0280008530.01.T01:intron 35.0%
TCATACTCATCCATATCAAC+AGG + Chr2:33548030-33548049 None:intergenic 35.0%
TCCTGATAATCTTCTATGAC+AGG + Chr2:33549453-33549472 None:intergenic 35.0%
TCGGCGAATTAACGTAAATA+GGG + Chr2:33549992-33550011 None:intergenic 35.0%
TCTCAACTAATTAGTAGGGT+AGG - Chr2:33550651-33550670 MsG0280008530.01.T01:CDS 35.0%
TCTTCAGCATCTTCTTGAAT+TGG + Chr2:33549084-33549103 None:intergenic 35.0%
TGATAGAATGGCTAGAGAAA+AGG - Chr2:33549134-33549153 MsG0280008530.01.T01:CDS 35.0%
TGATATGGATGAGTATGAGA+AGG - Chr2:33548032-33548051 MsG0280008530.01.T01:CDS 35.0%
TGTCATAGAAGATTATCAGG+AGG - Chr2:33549452-33549471 MsG0280008530.01.T01:intron 35.0%
TTCGGCGAATTAACGTAAAT+AGG + Chr2:33549993-33550012 None:intergenic 35.0%
TTGATAGACCATGTGTGTTA+CGG + Chr2:33550280-33550299 None:intergenic 35.0%
TTGGATGAAATTGCCAAGTT+GGG - Chr2:33548528-33548547 MsG0280008530.01.T01:intron 35.0%
! ATCTCTTTCCAACTGTTTCT+GGG + Chr2:33548467-33548486 None:intergenic 35.0%
! CATGATGGAAGCTGAAAATT+TGG - Chr2:33548701-33548720 MsG0280008530.01.T01:intron 35.0%
! TGCATCCTTCAGATTTTTCT+GGG - Chr2:33548761-33548780 MsG0280008530.01.T01:intron 35.0%
! TTGCATCCTTCAGATTTTTC+TGG - Chr2:33548760-33548779 MsG0280008530.01.T01:intron 35.0%
! TTTGTAGTTGTCTAGTTCCT+TGG - Chr2:33550515-33550534 MsG0280008530.01.T01:CDS 35.0%
!! TTATTTGCTATCTCCTCAAG+CGG + Chr2:33549384-33549403 None:intergenic 35.0%
AACTCCTTGATAAGAGCTGA+CGG - Chr2:33549258-33549277 MsG0280008530.01.T01:CDS 40.0%
AAGAACTTGAGGGGAAAAGA+AGG - Chr2:33548337-33548356 MsG0280008530.01.T01:intron 40.0%
AAGGACGATAACTATGAACC+TGG - Chr2:33547934-33547953 MsG0280008530.01.T01:exon 40.0%
AAGGTTACATTACTCACGCA+AGG - Chr2:33550404-33550423 MsG0280008530.01.T01:CDS 40.0%
ACCCACAATGGTATCACTAA+TGG + Chr2:33547857-33547876 None:intergenic 40.0%
AGATTCCAGTGGTTTCAAAG+GGG + Chr2:33549731-33549750 None:intergenic 40.0%
AGCTTTCAGGATTTCATCCT+CGG + Chr2:33547647-33547666 None:intergenic 40.0%
AGGAGATCATGTAGATCTGT+TGG - Chr2:33550671-33550690 MsG0280008530.01.T01:CDS 40.0%
AGGAGTTCTTAAAGGAGTCA+AGG + Chr2:33548649-33548668 None:intergenic 40.0%
AGGTTACATTACTCACGCAA+GGG - Chr2:33550405-33550424 MsG0280008530.01.T01:CDS 40.0%
AGTCCACTCAGTCTTCTTAA+TGG + Chr2:33547776-33547795 None:intergenic 40.0%
ATAGCATCTCCTTTACTAGC+TGG + Chr2:33548681-33548700 None:intergenic 40.0%
ATCCTCTTCAATCTTCTCCT+CGG + Chr2:33549109-33549128 None:intergenic 40.0%
ATGAAAAAAAGTCTGCGCTC+TGG - Chr2:33549009-33549028 MsG0280008530.01.T01:CDS 40.0%
CACTCAGTCTTCTTAATGGA+AGG + Chr2:33547772-33547791 None:intergenic 40.0%
CCCTGTCATAGAAGATTATC+AGG - Chr2:33549449-33549468 MsG0280008530.01.T01:intron 40.0%
CTCATCCATATCAACAGGAT+CGG + Chr2:33548025-33548044 None:intergenic 40.0%
CTCCTTTCTTATCATCTCGT+CGG + Chr2:33549325-33549344 None:intergenic 40.0%
CTTCCATTAAGAAGACTGAG+TGG - Chr2:33547770-33547789 MsG0280008530.01.T01:three_prime_UTR 40.0%
GAATTGGTTGCATCACTATC+TGG + Chr2:33549068-33549087 None:intergenic 40.0%
GAGCTAGTTGCATATTATGG+TGG - Chr2:33549812-33549831 MsG0280008530.01.T01:CDS 40.0%
GATCTCTTTCCAACTGTTTC+TGG + Chr2:33548468-33548487 None:intergenic 40.0%
GCAAATAAGGAGAGAGAGAA+AGG - Chr2:33549396-33549415 MsG0280008530.01.T01:CDS 40.0%
GCTTGAGGAGATAGCAAATA+AGG - Chr2:33549383-33549402 MsG0280008530.01.T01:CDS 40.0%
GTCTAAATGCCCTTCAAAGT+TGG - Chr2:33550568-33550587 MsG0280008530.01.T01:CDS 40.0%
GTTATCGTCCTTAACACAAG+TGG + Chr2:33547926-33547945 None:intergenic 40.0%
TAGAATCTCAGTAGCATCCA+AGG + Chr2:33550535-33550554 None:intergenic 40.0%
TAGAGAAAAGGCAGAAGAAG+AGG - Chr2:33549146-33549165 MsG0280008530.01.T01:CDS 40.0%
TCATCCATATCAACAGGATC+GGG + Chr2:33548024-33548043 None:intergenic 40.0%
TCATTCAAAGGGAACTTCCT+AGG - Chr2:33549205-33549224 MsG0280008530.01.T01:CDS 40.0%
TCGTTTGCAAATCTGCAGAA+CGG - Chr2:33547716-33547735 MsG0280008530.01.T01:three_prime_UTR 40.0%
TGAGAAGTAAGCTGGATGAT+GGG - Chr2:33550354-33550373 MsG0280008530.01.T01:CDS 40.0%
TGAGAATGTGAGAAGTAAGC+TGG - Chr2:33550346-33550365 MsG0280008530.01.T01:CDS 40.0%
TGATAGACCATGTGTGTTAC+GGG + Chr2:33550279-33550298 None:intergenic 40.0%
TGATGTTGCTGATGAGGATA+GGG - Chr2:33548281-33548300 MsG0280008530.01.T01:intron 40.0%
TGCAGATTTGCAAACGAGTA+GGG + Chr2:33547713-33547732 None:intergenic 40.0%
TGCTTCAACAAAATCCTCGA+GGG + Chr2:33550219-33550238 None:intergenic 40.0%
TGGGTGTCTGTGGATAATTA+GGG + Chr2:33548620-33548639 None:intergenic 40.0%
TGGTTTCAAAGGGGTGAAAA+GGG + Chr2:33549722-33549741 None:intergenic 40.0%
TTCTTAAAGGAGTCAAGGCT+TGG + Chr2:33548644-33548663 None:intergenic 40.0%
TTGATGTTGCTGATGAGGAT+AGG - Chr2:33548280-33548299 MsG0280008530.01.T01:intron 40.0%
TTGGGTGTCTGTGGATAATT+AGG + Chr2:33548621-33548640 None:intergenic 40.0%
TTTGAGAAAAGGCCTCCTTT+GGG - Chr2:33548252-33548271 MsG0280008530.01.T01:intron 40.0%
TTTGATACCCGTAACACACA+TGG - Chr2:33550269-33550288 MsG0280008530.01.T01:CDS 40.0%
! AAAGGAGGCCTTTTCTCAAA+CGG + Chr2:33548252-33548271 None:intergenic 40.0%
! GATGATTCGACTTGAGAAGA+AGG - Chr2:33550385-33550404 MsG0280008530.01.T01:CDS 40.0%
! GCAAGGGATGGTTTTTCTTT+TGG - Chr2:33548886-33548905 MsG0280008530.01.T01:intron 40.0%
! GCATCCTTCAGATTTTTCTG+GGG - Chr2:33548762-33548781 MsG0280008530.01.T01:intron 40.0%
! GTTCTCTGAGGAGTTCTTAA+AGG + Chr2:33548657-33548676 None:intergenic 40.0%
! TCTTTTGGCATGACTACGAA+GGG - Chr2:33548901-33548920 MsG0280008530.01.T01:intron 40.0%
! TGTTCACCTTTTCACCCTTT+GGG - Chr2:33549575-33549594 MsG0280008530.01.T01:intron 40.0%
! TTCTTTTGGCATGACTACGA+AGG - Chr2:33548900-33548919 MsG0280008530.01.T01:intron 40.0%
! TTGTTCACCTTTTCACCCTT+TGG - Chr2:33549574-33549593 MsG0280008530.01.T01:intron 40.0%
!! ACTCATTTTTAGGCTGTGGA+AGG + Chr2:33549044-33549063 None:intergenic 40.0%
!! TGGTACTCATTTTTAGGCTG+TGG + Chr2:33549048-33549067 None:intergenic 40.0%
AAAAGGCAGAAGAAGAGGCA+CGG - Chr2:33549151-33549170 MsG0280008530.01.T01:CDS 45.0%
AAGAGAGAATTGAAGGCTGC+TGG - Chr2:33548168-33548187 MsG0280008530.01.T01:CDS 45.0%
AAGGATGCAACTCCTAACAG+TGG + Chr2:33548750-33548769 None:intergenic 45.0%
AATCACGTTGTGTACCCCAA+AGG + Chr2:33549593-33549612 None:intergenic 45.0%
AATTTCCTAGGGTCATCACC+AGG + Chr2:33547955-33547974 None:intergenic 45.0%
AGAAACAGCTTGAGGAAGCA+AGG - Chr2:33548124-33548143 MsG0280008530.01.T01:CDS 45.0%
AGAGAGAATTGAAGGCTGCT+GGG - Chr2:33548169-33548188 MsG0280008530.01.T01:CDS 45.0%
AGCATTGTCATGCTCCAGTA+AGG + Chr2:33549355-33549374 None:intergenic 45.0%
AGCCGACGAGATGATAAGAA+AGG - Chr2:33549320-33549339 MsG0280008530.01.T01:CDS 45.0%
AGGCTGCTGGGATTGATATA+AGG - Chr2:33548181-33548200 MsG0280008530.01.T01:CDS 45.0%
AGTATCTTCGTGAGGCAATG+GGG - Chr2:33550180-33550199 MsG0280008530.01.T01:CDS 45.0%
ATATGTAGCTCATCCCTGAG+AGG + Chr2:33548931-33548950 None:intergenic 45.0%
ATCACGTTGTGTACCCCAAA+GGG + Chr2:33549592-33549611 None:intergenic 45.0%
CAATGCTAAGTATCCGCTTG+AGG - Chr2:33549368-33549387 MsG0280008530.01.T01:CDS 45.0%
CAGAGAACACCAGCTAGTAA+AGG - Chr2:33548669-33548688 MsG0280008530.01.T01:intron 45.0%
CAGTATCTTCGTGAGGCAAT+GGG - Chr2:33550179-33550198 MsG0280008530.01.T01:CDS 45.0%
CATTGCCTCACGAAGATACT+GGG + Chr2:33550180-33550199 None:intergenic 45.0%
CTAATAAGCTCCAGAGATGC+TGG + Chr2:33549237-33549256 None:intergenic 45.0%
CTAATGGTTCTCCACTGAGT+AGG + Chr2:33547841-33547860 None:intergenic 45.0%
CTGAATGACCCAGAAACAGT+TGG - Chr2:33548456-33548475 MsG0280008530.01.T01:intron 45.0%
CTGCAGATTTGCAAACGAGT+AGG + Chr2:33547714-33547733 None:intergenic 45.0%
CTGGGATTGATATAAGGCAG+CGG - Chr2:33548187-33548206 MsG0280008530.01.T01:CDS 45.0%
GATCCAAACGAGCAGCAAAT+GGG - Chr2:33549418-33549437 MsG0280008530.01.T01:CDS 45.0%
GCATGAAAATGATTCCCTCG+AGG - Chr2:33550202-33550221 MsG0280008530.01.T01:CDS 45.0%
GGTTTCAAAGGGGTGAAAAG+GGG + Chr2:33549721-33549740 None:intergenic 45.0%
GTAAAGCTCGTTGGTATGAG+TGG - Chr2:33547740-33547759 MsG0280008530.01.T01:three_prime_UTR 45.0%
GTGACCCCAGAAAAATCTGA+AGG + Chr2:33548769-33548788 None:intergenic 45.0%
GTGAGAAGTAAGCTGGATGA+TGG - Chr2:33550353-33550372 MsG0280008530.01.T01:CDS 45.0%
GTGCTTCAACAAAATCCTCG+AGG + Chr2:33550220-33550239 None:intergenic 45.0%
GTGGTTTCAAAGGGGTGAAA+AGG + Chr2:33549723-33549742 None:intergenic 45.0%
GTTTGAGAAAAGGCCTCCTT+TGG - Chr2:33548251-33548270 MsG0280008530.01.T01:intron 45.0%
TCCTCTTCAATCTTCTCCTC+GGG + Chr2:33549108-33549127 None:intergenic 45.0%
TCTTCTATGACAGGGATAGC+AGG + Chr2:33549444-33549463 None:intergenic 45.0%
TCTTGATCGGAAATCTGAGG+TGG + Chr2:33548507-33548526 None:intergenic 45.0%
TGAAAATTTGGCCAGGCTGA+GGG - Chr2:33548713-33548732 MsG0280008530.01.T01:intron 45.0%
TGAGAAAGCAAGACGTTGCA+AGG - Chr2:33548379-33548398 MsG0280008530.01.T01:intron 45.0%
TGGAAGCTGAAAATTTGGCC+AGG - Chr2:33548706-33548725 MsG0280008530.01.T01:intron 45.0%
TGGGGTCACTCCTAAGAAAA+AGG - Chr2:33548780-33548799 MsG0280008530.01.T01:intron 45.0%
TTACTAGCTGGTGTTCTCTG+AGG + Chr2:33548669-33548688 None:intergenic 45.0%
TTCTGGGTCATTCAGCTTCT+TGG + Chr2:33548451-33548470 None:intergenic 45.0%
! AAAGGAGTCAAGGCTTGGTT+GGG + Chr2:33548639-33548658 None:intergenic 45.0%
! CATGGTCTATCAAGTGTTGC+TGG - Chr2:33550287-33550306 MsG0280008530.01.T01:CDS 45.0%
! GTTCACCTTTTCACCCTTTG+GGG - Chr2:33549576-33549595 MsG0280008530.01.T01:intron 45.0%
! TAAAGGAGTCAAGGCTTGGT+TGG + Chr2:33548640-33548659 None:intergenic 45.0%
!! AAGTAAGCTGGATGATGGGA+AGG - Chr2:33550358-33550377 MsG0280008530.01.T01:CDS 45.0%
!! CAGCATCTCTGGAGCTTATT+AGG - Chr2:33549235-33549254 MsG0280008530.01.T01:CDS 45.0%
!! TTTCACCCCTTTGAAACCAC+TGG - Chr2:33549723-33549742 MsG0280008530.01.T01:CDS 45.0%
!! AAAAATTAAATAGAAAAATT+TGG - Chr2:33549756-33549775 MsG0280008530.01.T01:CDS 5.0%
!! TTATAATCATTTAATTAATT+AGG - Chr2:33549873-33549892 MsG0280008530.01.T01:CDS 5.0%
AAAGGAGCTTCCAGCCTTAC+TGG - Chr2:33549338-33549357 MsG0280008530.01.T01:CDS 50.0%
AACAGCTTGAGGAAGCAAGG+AGG - Chr2:33548127-33548146 MsG0280008530.01.T01:CDS 50.0%
ACCCTAGGAAATTGCGTCCA+GGG - Chr2:33547962-33547981 MsG0280008530.01.T01:CDS 50.0%
AGCTAGGGAGAAACAGCTTG+AGG - Chr2:33548116-33548135 MsG0280008530.01.T01:CDS 50.0%
AGGTGTTTGGACAAACACCG+AGG - Chr2:33547627-33547646 MsG0280008530.01.T01:three_prime_UTR 50.0%
ATAAGCTCCAGAGATGCTGG+AGG + Chr2:33549234-33549253 None:intergenic 50.0%
CAGAACGGTGTAAAGCTCGT+TGG - Chr2:33547731-33547750 MsG0280008530.01.T01:three_prime_UTR 50.0%
CCAGTATCTTCGTGAGGCAA+TGG - Chr2:33550178-33550197 MsG0280008530.01.T01:CDS 50.0%
CCATTGCCTCACGAAGATAC+TGG + Chr2:33550181-33550200 None:intergenic 50.0%
CCTTAACACAAGTGGCGTCA+AGG + Chr2:33547918-33547937 None:intergenic 50.0%
CCTTACTCCCAGAAGTGGTA+TGG - Chr2:33548858-33548877 MsG0280008530.01.T01:intron 50.0%
CCTTGACGCCACTTGTGTTA+AGG - Chr2:33547915-33547934 MsG0280008530.01.T01:three_prime_UTR 50.0%
CTAAGCTTACGCCTACTCAG+TGG - Chr2:33547827-33547846 MsG0280008530.01.T01:three_prime_UTR 50.0%
CTCCTTCGCAGTGTCTTGAA+CGG - Chr2:33547881-33547900 MsG0280008530.01.T01:three_prime_UTR 50.0%
CTGAAAATTTGGCCAGGCTG+AGG - Chr2:33548712-33548731 MsG0280008530.01.T01:intron 50.0%
GAGTCTCAGACACCACTGTT+AGG - Chr2:33548735-33548754 MsG0280008530.01.T01:intron 50.0%
GCAGGCTTCGATTCAGGATT+CGG + Chr2:33547997-33548016 None:intergenic 50.0%
GGATCCAAACGAGCAGCAAA+TGG - Chr2:33549417-33549436 MsG0280008530.01.T01:CDS 50.0%
GGATTGATATAAGGCAGCGG+AGG - Chr2:33548190-33548209 MsG0280008530.01.T01:CDS 50.0%
GGTTATGCCAGTGACCTTGT+GGG - Chr2:33548549-33548568 MsG0280008530.01.T01:intron 50.0%
GTCACTGGCATAACCCAACT+TGG + Chr2:33548544-33548563 None:intergenic 50.0%
GTCTCCGTCAGCTCTTATCA+AGG + Chr2:33549265-33549284 None:intergenic 50.0%
GTGTACCCCAAAGGGTGAAA+AGG + Chr2:33549584-33549603 None:intergenic 50.0%
TACCGTTCAAGACACTGCGA+AGG + Chr2:33547886-33547905 None:intergenic 50.0%
TACGAAGGGAACTCCTCTCA+GGG - Chr2:33548915-33548934 MsG0280008530.01.T01:CDS 50.0%
TGAAGCCCAGTATCTTCGTG+AGG - Chr2:33550172-33550191 MsG0280008530.01.T01:CDS 50.0%
TGAGTTCATTGCTGCCCACA+AGG + Chr2:33548566-33548585 None:intergenic 50.0%
TGCTTTCCGAAGCATGTGCT+CGG - Chr2:33548058-33548077 MsG0280008530.01.T01:CDS 50.0%
TGTTGCTGATGAGGATAGGG+AGG - Chr2:33548284-33548303 MsG0280008530.01.T01:intron 50.0%
TTGATATAAGGCAGCGGAGG+AGG - Chr2:33548193-33548212 MsG0280008530.01.T01:CDS 50.0%
TTGGCATGCAGAATAGCAGC+CGG + Chr2:33548432-33548451 None:intergenic 50.0%
TTGTCATGCTCCAGTAAGGC+TGG + Chr2:33549351-33549370 None:intergenic 50.0%
! ATGAACCTGGTGATGACCCT+AGG - Chr2:33547947-33547966 MsG0280008530.01.T01:exon 50.0%
! CCATACCACTTCTGGGAGTA+AGG + Chr2:33548861-33548880 None:intergenic 50.0%
! TGATCGGAAATCTGAGGTGG+TGG + Chr2:33548504-33548523 None:intergenic 50.0%
!! ATCTCGTCGGCTTGCTCAAT+AGG + Chr2:33549312-33549331 None:intergenic 50.0%
!! TCTCGTCGGCTTGCTCAATA+GGG + Chr2:33549311-33549330 None:intergenic 50.0%
ACGAGTAGCACTGCTGCCTT+CGG + Chr2:33548589-33548608 None:intergenic 55.0%
AGAAGATGCTGAAGAGCCCG+AGG - Chr2:33549089-33549108 MsG0280008530.01.T01:CDS 55.0%
AGCCAACCGAGCACATGCTT+CGG + Chr2:33548067-33548086 None:intergenic 55.0%
AGCGGAGGAGGAAAAGGAGA+GGG - Chr2:33548205-33548224 MsG0280008530.01.T01:CDS 55.0%
AGTAAGGCCTGCACTTCCAG+GGG + Chr2:33548845-33548864 None:intergenic 55.0%
ATTGCTGCCCACAAGGTCAC+TGG + Chr2:33548559-33548578 None:intergenic 55.0%
CCCCTGGACGCAATTTCCTA+GGG + Chr2:33547966-33547985 None:intergenic 55.0%
CCCTAGGAAATTGCGTCCAG+GGG - Chr2:33547963-33547982 MsG0280008530.01.T01:CDS 55.0%
CTACGAAGGGAACTCCTCTC+AGG - Chr2:33548914-33548933 MsG0280008530.01.T01:CDS 55.0%
GACCCTAGGAAATTGCGTCC+AGG - Chr2:33547961-33547980 MsG0280008530.01.T01:CDS 55.0%
GAGTAAGGCCTGCACTTCCA+GGG + Chr2:33548846-33548865 None:intergenic 55.0%
GCCCGAGGAGAAGATTGAAG+AGG - Chr2:33549104-33549123 MsG0280008530.01.T01:CDS 55.0%
GCGACCCGATCCTGTTGATA+TGG - Chr2:33548017-33548036 MsG0280008530.01.T01:CDS 55.0%
GCTTGCTCAATAGGGGTTGG+TGG + Chr2:33549303-33549322 None:intergenic 55.0%
GGATTCGGATCAATCTCCCC+TGG + Chr2:33547982-33548001 None:intergenic 55.0%
GGCAGCAATGAACTCACCGA+AGG - Chr2:33548570-33548589 MsG0280008530.01.T01:intron 55.0%
GGGTTATGCCAGTGACCTTG+TGG - Chr2:33548548-33548567 MsG0280008530.01.T01:intron 55.0%
TAAGGCAGCGGAGGAGGAAA+AGG - Chr2:33548199-33548218 MsG0280008530.01.T01:CDS 55.0%
TCCCCTGGACGCAATTTCCT+AGG + Chr2:33547967-33547986 None:intergenic 55.0%
TGCTGATGAGGATAGGGAGG+TGG - Chr2:33548287-33548306 MsG0280008530.01.T01:intron 55.0%
TGGCATGCAGAATAGCAGCC+GGG + Chr2:33548431-33548450 None:intergenic 55.0%
TTCCGAAGCATGTGCTCGGT+TGG - Chr2:33548062-33548081 MsG0280008530.01.T01:CDS 55.0%
TTGCAGAGGGAGTCAGCAGT+GGG + Chr2:33548822-33548841 None:intergenic 55.0%
! AAGGCTTGGTTGGGTGTCTG+TGG + Chr2:33548630-33548649 None:intergenic 55.0%
! AGAAGAAGAGGCACGGCAGA+AGG - Chr2:33549158-33549177 MsG0280008530.01.T01:CDS 55.0%
! AGGCCCATTTGCTGCTCGTT+TGG + Chr2:33549424-33549443 None:intergenic 55.0%
! CGAAGGAGTACGACCCACAA+TGG + Chr2:33547869-33547888 None:intergenic 55.0%
! GACTGAGTGGACTCGAGAAG+AGG - Chr2:33547783-33547802 MsG0280008530.01.T01:three_prime_UTR 55.0%
! GCTCGGTTGGCTAACACGAA+AGG - Chr2:33548075-33548094 MsG0280008530.01.T01:CDS 55.0%
! TCGGCTTGCTCAATAGGGGT+TGG + Chr2:33549306-33549325 None:intergenic 55.0%
!! AAGTGGTATGGCGCTGGCAA+GGG - Chr2:33548870-33548889 MsG0280008530.01.T01:intron 55.0%
!! CTCGTCGGCTTGCTCAATAG+GGG + Chr2:33549310-33549329 None:intergenic 55.0%
AGAGATGCTGGAGGAGGCCT+AGG + Chr2:33549225-33549244 None:intergenic 60.0%
AGCTCCAGAGATGCTGGAGG+AGG + Chr2:33549231-33549250 None:intergenic 60.0%
CAGCGGAGGAGGAAAAGGAG+AGG - Chr2:33548204-33548223 MsG0280008530.01.T01:CDS 60.0%
GAGGGAGTCAGCAGTGGGAT+TGG + Chr2:33548817-33548836 None:intergenic 60.0%
GCACTTCCAGGGGTTGCAGA+GGG + Chr2:33548835-33548854 None:intergenic 60.0%
GCAGGCCTTACTCCCAGAAG+TGG - Chr2:33548853-33548872 MsG0280008530.01.T01:intron 60.0%
GCCAGCGCCATACCACTTCT+GGG + Chr2:33548868-33548887 None:intergenic 60.0%
GGAGTAAGGCCTGCACTTCC+AGG + Chr2:33548847-33548866 None:intergenic 60.0%
GGCATGCAGAATAGCAGCCG+GGG + Chr2:33548430-33548449 None:intergenic 60.0%
GTTGCAGAGGGAGTCAGCAG+TGG + Chr2:33548823-33548842 None:intergenic 60.0%
TAGGCCTCCTCCAGCATCTC+TGG - Chr2:33549224-33549243 MsG0280008530.01.T01:CDS 60.0%
TCCCAGAAGTGGTATGGCGC+TGG - Chr2:33548864-33548883 MsG0280008530.01.T01:intron 60.0%
TGCACTTCCAGGGGTTGCAG+AGG + Chr2:33548836-33548855 None:intergenic 60.0%
TGCAGAGAGGCAAGATGCCC+CGG - Chr2:33548410-33548429 MsG0280008530.01.T01:intron 60.0%
TGCCAGCGCCATACCACTTC+TGG + Chr2:33548869-33548888 None:intergenic 60.0%
! TCTGCAACCCCTGGAAGTGC+AGG - Chr2:33548835-33548854 MsG0280008530.01.T01:intron 60.0%
! TGTCTGAGACTCCCTCAGCC+TGG + Chr2:33548727-33548746 None:intergenic 60.0%
!! GAAGTGGTATGGCGCTGGCA+AGG - Chr2:33548869-33548888 MsG0280008530.01.T01:intron 60.0%
CTGACTCCCTCTGCAACCCC+TGG - Chr2:33548826-33548845 MsG0280008530.01.T01:intron 65.0%
GGTCGCGCAGGCTTCGATTC+AGG + Chr2:33548003-33548022 None:intergenic 65.0%
TCAACAGGATCGGGTCGCGC+AGG + Chr2:33548015-33548034 None:intergenic 65.0%
!! GGTATGGCGCTGGCAAGGGA+TGG - Chr2:33548874-33548893 MsG0280008530.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 33547619 33550779 33547619 ID=MsG0280008530.01;Name=MsG0280008530.01
Chr2 mRNA 33547619 33550779 33547619 ID=MsG0280008530.01.T01;Parent=MsG0280008530.01;Name=MsG0280008530.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.5|0.33|1|0.5|0.33|3|331|660
Chr2 exon 33547619 33548246 33547619 ID=MsG0280008530.01.T01:exon:7340;Parent=MsG0280008530.01.T01
Chr2 exon 33548910 33549462 33548910 ID=MsG0280008530.01.T01:exon:7339;Parent=MsG0280008530.01.T01
Chr2 exon 33549647 33550779 33549647 ID=MsG0280008530.01.T01:exon:7338;Parent=MsG0280008530.01.T01
Chr2 CDS 33549647 33550779 33549647 ID=MsG0280008530.01.T01:cds;Parent=MsG0280008530.01.T01
Chr2 CDS 33548910 33549462 33548910 ID=MsG0280008530.01.T01:cds;Parent=MsG0280008530.01.T01
Chr2 CDS 33547950 33548246 33547950 ID=MsG0280008530.01.T01:cds;Parent=MsG0280008530.01.T01
Chr2 three_prime_UTR 33547619 33547949 33547619 ID=MsG0280008530.01.T01:three_prime_utr;Parent=MsG0280008530.01.T01
Gene Sequence

>MsG0280008530.01.T01

ATGAGCATAGGTGTTTGGACAAACACCGAGGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCATATCTCGTCCCTACTCGTTTGCAAATCTGCAGAACGGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAGACTGAGTGGACTCGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTACGCCTACTCAGTGGAGAACCATTAGTGATACCATTGTGGGTCGTACTCCTTCGCAGTGTCTTGAACGGTATGAGAAACTCCTTGACGCCACTTGTGTTAAGGACGATAACTATGAACCTGGTGATGACCCTAGGAAATTGCGTCCAGGGGAGATTGATCCGAATCCTGAATCGAAGCCTGCGCGACCCGATCCTGTTGATATGGATGAGTATGAGAAGGAGATGCTTTCCGAAGCATGTGCTCGGTTGGCTAACACGAAAGGTAAAAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCAAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAATTGAAGGCTGCTGGGATTGATATAAGGCAGCGGAGGAGGAAAAGGAGAGGGATTGATTATAATGCAGAAATTCCGTTTGAGAAAAGGCCTCCTTTGGGTTATTTTGATGTTGCTGATGAGGATAGGGAGGTGGAGCAGCATGCATTCCCTACTACTATAGAAGAACTTGAGGGGAAAAGAAGGATTGATGTTGAGGCTCAGTTGAGAAAGCAAGACGTTGCAAGGAATAAAATTGCAGAGAGGCAAGATGCCCCGGCTGCTATTCTGCATGCCAAGAAGCTGAATGACCCAGAAACAGTTGGAAAGAGATCAAAACTGATGCTTCCACCACCTCAGATTTCCGATCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCCAGTGACCTTGTGGGCAGCAATGAACTCACCGAAGGCAGCAGTGCTACTCGTGCTCTTCTCCCTAATTATCCACAGACACCCAACCAAGCCTTGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACACCACTGGATGAGCTACATATCAATGAAGATATGGAGATGCGTGATAGTGCTAGACTCGAGCTACAGAGACAAGCTGATATGAAAAAAAGTCTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAATTCAAGAAGATGCTGAAGAGCCCGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATGGCTAGAGAAAAGGCAGAAGAAGAGGCACGGCAGAAGGCGTTACTTAGAAAACGATCAAAAGTCATTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTCTGGAGCTTATTAGGAACTCCTTGATAAGAGCTGACGGAGACAAAAGTTCATTTGTTCCACCAACCCCTATTGAGCAAGCCGACGAGATGATAAGAAAGGAGCTTCCAGCCTTACTGGAGCATGACAATGCTAAGTATCCGCTTGAGGAGATAGCAAATAAGGAGAGAGAGAAAGGATCCAAACGAGCAGCAAATGGGCCTGCTATCCCTGTCATAGAAGATTATCAGGAGGACGAGATGAAATCTGCTGATCAGTTGATAAAAGATGAAGCCCAGTATCTTCGTGAGGCAATGGGGCATGAAAATGATTCCCTCGAGGATTTTGTTGAAGCACATACAACATGCATTAATGATTTAATGTACTTTGATACCCGTAACACACATGGTCTATCAAGTGTTGCTGGAAACGCAGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGTAAGCTGGATGATGGGAAGGAGAAGATGATTCGACTTGAGAAGAAGGTTACATTACTCACGCAAGGGTACGAGTTATGCTACTGCTAA
Protein sequence

>MsG0280008530.01.T01

MSIGVWTNTEDEILKAAVMKYGKNQWAHISSLLVCKSAERCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLTPTQWRTISDTIVGRTPSQCLERYEKLLDATCVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEYEKEMLSEACARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPLGYFDVADEDREVEQHAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHAKKLNDPETVGKRSKLMLPPPQISDQELDEIAKLGYASDLVGSNELTEGSSATRALLPNYPQTPNQALTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLDELHINEDMEMRDSARLELQRQADMKKSLRSGLSSLPQPKNEYQIVMQPIQEDAEEPEEKIEEDMSDRMAREKAEEEARQKALLRKRSKVIQRELPRPPPASLELIRNSLIRADGDKSSFVPPTPIEQADEMIRKELPALLEHDNAKYPLEEIANKEREKGSKRAANGPAIPVIEDYQEDEMKSADQLIKDEAQYLREAMGHENDSLEDFVEAHTTCINDLMYFDTRNTHGLSSVAGNAEKLAALQNEFENVRSKLDDGKEKMIRLEKKVTLLTQGYELCYC*