Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009523.01.T01 | KEH30011.1 | 72.289 | 166 | 38 | 2 | 1 | 164 | 1 | 160 | 2.55E-78 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009523.01.T01 | A0A494G8Q3 | 75.301 | 166 | 39 | 2 | 1 | 164 | 1 | 166 | 9.52e-81 | 248 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280009523.01.T01 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009523.01.T01 | MTR_4g057975 | 72.289 | 166 | 38 | 2 | 1 | 164 | 1 | 160 | 3.09e-82 | 241 |
| MsG0280009523.01.T01 | MTR_6g075990 | 72.289 | 166 | 44 | 2 | 1 | 164 | 19 | 184 | 3.53e-80 | 238 |
| MsG0280009523.01.T01 | MTR_8g009330 | 70.909 | 165 | 46 | 2 | 1 | 164 | 24 | 187 | 1.85e-78 | 233 |
| MsG0280009523.01.T01 | MTR_5g031650 | 69.231 | 169 | 43 | 3 | 5 | 164 | 20 | 188 | 8.77e-78 | 231 |
| MsG0280009523.01.T01 | MTR_4g119600 | 70.482 | 166 | 47 | 2 | 1 | 164 | 1 | 166 | 2.04e-75 | 229 |
| MsG0280009523.01.T01 | MTR_8g463940 | 68.345 | 139 | 42 | 1 | 1 | 137 | 31 | 169 | 5.83e-62 | 189 |
| MsG0280009523.01.T01 | MTR_0219s0080 | 78.151 | 119 | 25 | 1 | 1 | 119 | 1 | 118 | 1.14e-60 | 184 |
| MsG0280009523.01.T01 | MTR_6g019000 | 76.667 | 120 | 27 | 1 | 1 | 119 | 1 | 120 | 1.46e-59 | 181 |
| MsG0280009523.01.T01 | MTR_0341s0040 | 76.667 | 120 | 27 | 1 | 1 | 119 | 1 | 120 | 2.49e-59 | 181 |
| MsG0280009523.01.T01 | MTR_7g060350 | 61.212 | 165 | 42 | 2 | 1 | 164 | 1 | 144 | 4.52e-59 | 182 |
| MsG0280009523.01.T01 | MTR_2g030885 | 75.610 | 123 | 30 | 0 | 1 | 123 | 1 | 123 | 5.30e-59 | 192 |
| MsG0280009523.01.T01 | MTR_3g067290 | 63.636 | 165 | 35 | 3 | 1 | 164 | 28 | 168 | 2.03e-58 | 181 |
| MsG0280009523.01.T01 | MTR_0340s0010 | 75.833 | 120 | 28 | 1 | 1 | 119 | 43 | 162 | 2.46e-58 | 180 |
| MsG0280009523.01.T01 | MTR_5g098640 | 77.193 | 114 | 26 | 0 | 1 | 114 | 1 | 114 | 1.27e-57 | 178 |
| MsG0280009523.01.T01 | MTR_3g110070 | 71.538 | 130 | 36 | 1 | 1 | 129 | 1 | 130 | 1.70e-57 | 176 |
| MsG0280009523.01.T01 | MTR_6g037570 | 71.631 | 141 | 38 | 2 | 1 | 139 | 16 | 156 | 6.88e-57 | 179 |
| MsG0280009523.01.T01 | MTR_2g026605 | 75.000 | 120 | 29 | 1 | 1 | 119 | 1 | 120 | 8.33e-57 | 174 |
| MsG0280009523.01.T01 | MTR_8g103800 | 57.927 | 164 | 41 | 2 | 1 | 164 | 1 | 136 | 7.84e-56 | 177 |
| MsG0280009523.01.T01 | MTR_6g018990 | 58.182 | 165 | 38 | 2 | 1 | 164 | 1 | 135 | 1.51e-55 | 171 |
| MsG0280009523.01.T01 | MTR_1g098990 | 59.394 | 165 | 36 | 2 | 1 | 164 | 1 | 135 | 5.67e-55 | 175 |
| MsG0280009523.01.T01 | MTR_3g434990 | 72.727 | 121 | 31 | 2 | 1 | 119 | 15 | 135 | 1.29e-52 | 164 |
| MsG0280009523.01.T01 | MTR_8g095070 | 72.269 | 119 | 33 | 0 | 1 | 119 | 1 | 119 | 6.21e-52 | 166 |
| MsG0280009523.01.T01 | MTR_8g059020 | 74.107 | 112 | 28 | 1 | 1 | 111 | 92 | 203 | 1.99e-50 | 162 |
| MsG0280009523.01.T01 | MTR_8g107490 | 71.569 | 102 | 28 | 1 | 64 | 164 | 44 | 145 | 5.05e-47 | 155 |
| MsG0280009523.01.T01 | MTR_4g051612 | 77.419 | 93 | 21 | 0 | 27 | 119 | 43 | 135 | 1.99e-46 | 150 |
| MsG0280009523.01.T01 | MTR_0116s0050 | 57.447 | 141 | 25 | 2 | 21 | 161 | 5 | 110 | 7.70e-45 | 145 |
| MsG0280009523.01.T01 | MTR_6g007833 | 73.196 | 97 | 26 | 0 | 1 | 97 | 1 | 97 | 8.69e-43 | 141 |
| MsG0280009523.01.T01 | MTR_4g051638 | 50.617 | 162 | 62 | 6 | 2 | 160 | 80 | 226 | 4.57e-41 | 138 |
| MsG0280009523.01.T01 | MTR_7g050385 | 55.797 | 138 | 57 | 4 | 27 | 162 | 84 | 219 | 3.65e-39 | 133 |
| MsG0280009523.01.T01 | MTR_3g015530 | 48.795 | 166 | 73 | 5 | 1 | 164 | 1 | 156 | 4.87e-38 | 130 |
| MsG0280009523.01.T01 | MTR_2g067720 | 75.000 | 84 | 20 | 1 | 37 | 119 | 32 | 115 | 9.23e-38 | 126 |
| MsG0280009523.01.T01 | MTR_2g105460 | 69.231 | 104 | 26 | 1 | 3 | 106 | 40 | 137 | 9.73e-38 | 136 |
| MsG0280009523.01.T01 | MTR_3g072200 | 50.932 | 161 | 57 | 7 | 2 | 160 | 8 | 148 | 6.25e-36 | 130 |
| MsG0280009523.01.T01 | MTR_1g059880 | 45.342 | 161 | 56 | 5 | 2 | 160 | 44 | 174 | 9.40e-36 | 123 |
| MsG0280009523.01.T01 | MTR_3g437000 | 55.462 | 119 | 49 | 4 | 27 | 143 | 11 | 127 | 3.16e-34 | 117 |
| MsG0280009523.01.T01 | MTR_4g049670 | 44.578 | 166 | 51 | 5 | 1 | 164 | 1 | 127 | 9.92e-32 | 110 |
| MsG0280009523.01.T01 | MTR_2g096070 | 71.250 | 80 | 22 | 1 | 64 | 142 | 83 | 162 | 1.48e-31 | 119 |
| MsG0280009523.01.T01 | MTR_3g077875 | 36.170 | 188 | 94 | 4 | 1 | 164 | 1 | 186 | 8.07e-31 | 113 |
| MsG0280009523.01.T01 | MTR_5g030790 | 70.886 | 79 | 23 | 0 | 1 | 79 | 31 | 109 | 1.09e-30 | 107 |
| MsG0280009523.01.T01 | MTR_3g087440 | 37.766 | 188 | 91 | 4 | 1 | 164 | 1 | 186 | 2.36e-30 | 110 |
| MsG0280009523.01.T01 | MTR_2g073060 | 57.447 | 94 | 34 | 2 | 37 | 124 | 74 | 167 | 1.17e-28 | 104 |
| MsG0280009523.01.T01 | MTR_3g022615 | 66.667 | 84 | 27 | 1 | 1 | 83 | 52 | 135 | 2.30e-28 | 102 |
| MsG0280009523.01.T01 | MTR_7g057800 | 48.000 | 125 | 56 | 2 | 1 | 116 | 1 | 125 | 5.13e-28 | 105 |
| MsG0280009523.01.T01 | MTR_7g057800 | 46.512 | 129 | 59 | 3 | 6 | 124 | 127 | 255 | 2.72e-26 | 100 |
| MsG0280009523.01.T01 | MTR_3g034840 | 34.659 | 176 | 103 | 4 | 1 | 164 | 1 | 176 | 9.59e-28 | 103 |
| MsG0280009523.01.T01 | MTR_0599s0020 | 34.659 | 176 | 103 | 4 | 1 | 164 | 1 | 176 | 9.59e-28 | 103 |
| MsG0280009523.01.T01 | MTR_2g451070 | 50.000 | 120 | 51 | 4 | 1 | 119 | 7 | 118 | 2.18e-27 | 99.8 |
| MsG0280009523.01.T01 | MTR_1g081740 | 43.750 | 160 | 58 | 6 | 2 | 160 | 7 | 135 | 6.10e-27 | 100 |
| MsG0280009523.01.T01 | MTR_6g090600 | 53.933 | 89 | 40 | 1 | 77 | 164 | 1 | 89 | 1.25e-26 | 97.1 |
| MsG0280009523.01.T01 | MTR_4g048360 | 72.308 | 65 | 18 | 0 | 1 | 65 | 1 | 65 | 8.45e-26 | 94.7 |
| MsG0280009523.01.T01 | MTR_6g452470 | 57.447 | 94 | 38 | 2 | 1 | 93 | 122 | 214 | 1.27e-25 | 97.8 |
| MsG0280009523.01.T01 | MTR_7g064870 | 36.527 | 167 | 86 | 5 | 1 | 164 | 1 | 150 | 4.41e-25 | 95.5 |
| MsG0280009523.01.T01 | MTR_5g079560 | 44.545 | 110 | 58 | 1 | 58 | 164 | 73 | 182 | 5.87e-25 | 96.7 |
| MsG0280009523.01.T01 | MTR_3g462670 | 39.759 | 166 | 54 | 5 | 1 | 164 | 1 | 122 | 6.65e-25 | 96.3 |
| MsG0280009523.01.T01 | MTR_5g053380 | 75.806 | 62 | 15 | 0 | 1 | 62 | 1 | 62 | 9.25e-25 | 91.7 |
| MsG0280009523.01.T01 | MTR_3g455770 | 68.493 | 73 | 22 | 1 | 1 | 72 | 7 | 79 | 1.29e-24 | 92.0 |
| MsG0280009523.01.T01 | MTR_8g038805 | 38.012 | 171 | 42 | 5 | 1 | 164 | 1 | 114 | 2.13e-24 | 92.4 |
| MsG0280009523.01.T01 | MTR_5g006100 | 35.882 | 170 | 95 | 4 | 1 | 164 | 1 | 162 | 2.56e-24 | 98.6 |
| MsG0280009523.01.T01 | MTR_1g024995 | 70.769 | 65 | 13 | 1 | 1 | 65 | 14 | 72 | 9.21e-24 | 89.7 |
| MsG0280009523.01.T01 | MTR_6g464570 | 42.857 | 112 | 57 | 3 | 59 | 164 | 14 | 124 | 9.59e-24 | 91.3 |
| MsG0280009523.01.T01 | MTR_1g081020 | 72.131 | 61 | 17 | 0 | 1 | 61 | 32 | 92 | 9.49e-23 | 87.0 |
| MsG0280009523.01.T01 | MTR_5g060540 | 44.776 | 134 | 44 | 3 | 37 | 164 | 15 | 124 | 1.51e-22 | 92.8 |
| MsG0280009523.01.T01 | MTR_7g055617 | 72.464 | 69 | 19 | 0 | 1 | 69 | 1 | 69 | 1.80e-22 | 90.9 |
| MsG0280009523.01.T01 | MTR_2g026585 | 40.625 | 160 | 63 | 6 | 2 | 160 | 8 | 136 | 3.30e-22 | 91.7 |
| MsG0280009523.01.T01 | MTR_5g046160 | 42.308 | 104 | 59 | 1 | 59 | 161 | 40 | 143 | 7.07e-22 | 89.0 |
| MsG0280009523.01.T01 | MTR_8g020433 | 80.000 | 50 | 10 | 0 | 115 | 164 | 68 | 117 | 7.27e-21 | 88.6 |
| MsG0280009523.01.T01 | MTR_5g071980 | 44.444 | 135 | 62 | 5 | 2 | 131 | 8 | 134 | 1.87e-20 | 85.5 |
| MsG0280009523.01.T01 | MTR_3g045850 | 38.562 | 153 | 71 | 5 | 1 | 135 | 1 | 148 | 2.02e-20 | 82.8 |
| MsG0280009523.01.T01 | MTR_1g072340 | 71.930 | 57 | 16 | 0 | 1 | 57 | 34 | 90 | 3.22e-20 | 80.5 |
| MsG0280009523.01.T01 | MTR_1g075420 | 38.843 | 121 | 59 | 1 | 15 | 135 | 10 | 115 | 5.29e-20 | 80.9 |
| MsG0280009523.01.T01 | MTR_6g084740 | 52.083 | 96 | 38 | 3 | 2 | 97 | 8 | 95 | 1.40e-19 | 80.5 |
| MsG0280009523.01.T01 | MTR_2g067930 | 37.654 | 162 | 68 | 5 | 1 | 160 | 1 | 131 | 1.93e-19 | 81.3 |
| MsG0280009523.01.T01 | MTR_4g057300 | 58.730 | 63 | 25 | 1 | 103 | 164 | 1 | 63 | 4.87e-19 | 82.4 |
| MsG0280009523.01.T01 | MTR_3g467720 | 67.742 | 62 | 14 | 1 | 1 | 62 | 7 | 62 | 2.15e-18 | 77.0 |
| MsG0280009523.01.T01 | MTR_6g077970 | 70.909 | 55 | 15 | 1 | 22 | 75 | 44 | 98 | 2.63e-18 | 75.5 |
| MsG0280009523.01.T01 | MTR_5g060510 | 44.138 | 145 | 54 | 5 | 22 | 164 | 37 | 156 | 4.78e-18 | 77.0 |
| MsG0280009523.01.T01 | MTR_0360s0020 | 64.615 | 65 | 17 | 1 | 1 | 65 | 24 | 82 | 8.85e-18 | 73.9 |
| MsG0280009523.01.T01 | MTR_1g075860 | 50.820 | 61 | 30 | 0 | 54 | 114 | 44 | 104 | 8.51e-17 | 72.4 |
| MsG0280009523.01.T01 | MTR_8g467980 | 52.174 | 69 | 32 | 1 | 65 | 132 | 76 | 144 | 1.25e-16 | 72.4 |
| MsG0280009523.01.T01 | MTR_5g015710 | 45.652 | 92 | 47 | 1 | 58 | 146 | 75 | 166 | 1.46e-16 | 73.9 |
| MsG0280009523.01.T01 | MTR_3g116710 | 38.053 | 113 | 64 | 3 | 53 | 160 | 72 | 183 | 1.59e-16 | 74.3 |
| MsG0280009523.01.T01 | MTR_4g099080 | 76.087 | 46 | 11 | 0 | 2 | 47 | 8 | 53 | 2.16e-16 | 69.3 |
| MsG0280009523.01.T01 | MTR_1g058140 | 31.361 | 169 | 57 | 5 | 1 | 164 | 22 | 136 | 2.66e-16 | 73.6 |
| MsG0280009523.01.T01 | MTR_8g016360 | 35.398 | 113 | 68 | 3 | 56 | 164 | 14 | 125 | 1.09e-15 | 69.7 |
| MsG0280009523.01.T01 | MTR_3g030230 | 55.738 | 61 | 26 | 1 | 101 | 160 | 69 | 129 | 1.59e-15 | 70.5 |
| MsG0280009523.01.T01 | MTR_5g070810 | 41.667 | 84 | 46 | 1 | 84 | 164 | 14 | 97 | 1.59e-15 | 68.9 |
| MsG0280009523.01.T01 | MTR_1g057380 | 58.065 | 62 | 26 | 0 | 1 | 62 | 17 | 78 | 2.71e-15 | 67.4 |
| MsG0280009523.01.T01 | MTR_3g074010 | 79.487 | 39 | 8 | 0 | 27 | 65 | 6 | 44 | 1.53e-14 | 65.5 |
| MsG0280009523.01.T01 | MTR_6g089230 | 44.444 | 72 | 39 | 1 | 90 | 160 | 10 | 81 | 2.81e-13 | 65.5 |
| MsG0280009523.01.T01 | MTR_7g065910 | 43.243 | 74 | 39 | 1 | 94 | 164 | 24 | 97 | 9.23e-13 | 65.1 |
| MsG0280009523.01.T01 | MTR_6g026910 | 36.735 | 147 | 40 | 5 | 2 | 147 | 8 | 102 | 3.13e-12 | 62.8 |
| MsG0280009523.01.T01 | MTR_6g029530 | 32.727 | 110 | 66 | 1 | 59 | 160 | 498 | 607 | 3.42e-12 | 63.9 |
| MsG0280009523.01.T01 | MTR_6g065450 | 70.833 | 48 | 8 | 1 | 1 | 48 | 93 | 134 | 4.42e-12 | 61.2 |
| MsG0280009523.01.T01 | MTR_7g010970 | 47.692 | 65 | 31 | 1 | 103 | 164 | 1 | 65 | 9.66e-12 | 61.2 |
| MsG0280009523.01.T01 | MTR_1g012760 | 34.579 | 107 | 66 | 3 | 59 | 164 | 35 | 138 | 1.38e-11 | 61.2 |
| MsG0280009523.01.T01 | MTR_1g012760 | 34.579 | 107 | 66 | 3 | 59 | 164 | 46 | 149 | 1.60e-11 | 61.2 |
| MsG0280009523.01.T01 | MTR_0156s0040 | 46.154 | 65 | 32 | 1 | 103 | 164 | 1 | 65 | 2.04e-11 | 59.7 |
| MsG0280009523.01.T01 | MTR_5g046245 | 81.250 | 32 | 6 | 0 | 133 | 164 | 5 | 36 | 2.26e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGGATGACTTGCTTAAT+TGG | 0.177302 | 2:-53616773 | MsG0280009523.01.T01:CDS |
| GGTACGTCGTCAAGCAAATA+AGG | 0.305461 | 2:-53616751 | MsG0280009523.01.T01:CDS |
| TGGAGATTGAACATTCTTAA+TGG | 0.306492 | 2:-53616552 | MsG0280009523.01.T01:CDS |
| ATCTTTCAATTTAACGTTGT+CGG | 0.336029 | 2:+53616794 | None:intergenic |
| AGCTCCATCAATGTTTGGTT+TGG | 0.354567 | 2:+53616902 | None:intergenic |
| TGAGAACGCGGAAGATGATC+TGG | 0.359312 | 2:-53616985 | MsG0280009523.01.T01:CDS |
| TGGTTAGCAAATATCTTAGT+AGG | 0.370024 | 2:-53616587 | MsG0280009523.01.T01:CDS |
| GCGATGGAGCCGGATTTATA+AGG | 0.383153 | 2:-53616516 | None:intergenic |
| ACGGAAGCTCCATCAATGTT+TGG | 0.403119 | 2:+53616897 | None:intergenic |
| TTTGGTTTGGCTTCAACCTT+AGG | 0.420594 | 2:+53616915 | None:intergenic |
| TAAGGATGACTTGCTTAATT+GGG | 0.454747 | 2:-53616772 | MsG0280009523.01.T01:CDS |
| AGCATGTGTCCTTATAAATC+CGG | 0.470502 | 2:+53616507 | None:intergenic |
| GCTTCATTATATGTTGACTT+TGG | 0.486342 | 2:-53616864 | MsG0280009523.01.T01:CDS |
| GAAGCCAAACCAAACATTGA+TGG | 0.490639 | 2:-53616906 | MsG0280009523.01.T01:CDS |
| AAACTGAAGTATGAGACAAT+TGG | 0.506777 | 2:-53616636 | MsG0280009523.01.T01:CDS |
| AAAATGTGGGTGCATGTTCA+TGG | 0.511608 | 2:-53616607 | MsG0280009523.01.T01:CDS |
| CAACGTTAAATTGAAAGATA+AGG | 0.514377 | 2:-53616790 | MsG0280009523.01.T01:CDS |
| TCACATACTAGTCGCACCAT+TGG | 0.514670 | 2:+53616687 | None:intergenic |
| CTTAGTCGTGTCAACTTCGT+TGG | 0.518055 | 2:+53616824 | None:intergenic |
| TGGAGATGTCAAACTGCCTA+AGG | 0.538085 | 2:-53616931 | MsG0280009523.01.T01:CDS |
| TCACAACCATGCGATGGAGC+CGG | 0.543669 | 2:-53616526 | MsG0280009523.01.T01:CDS |
| TCAACTTCGTTGGCATGAAG+TGG | 0.549919 | 2:+53616834 | None:intergenic |
| TTAGTAGGAAAACAAAGGAA+TGG | 0.550984 | 2:-53616572 | MsG0280009523.01.T01:CDS |
| TATAATAATGGTTGAGAACG+CGG | 0.562306 | 2:-53616997 | None:intergenic |
| ATCAAGTTTGATCAATCCAA+TGG | 0.566355 | 2:-53616703 | MsG0280009523.01.T01:CDS |
| ATAAATCCGGCTCCATCGCA+TGG | 0.580864 | 2:+53616520 | None:intergenic |
| CGTCGTCAAGCAAATAAGGC+GGG | 0.585237 | 2:-53616747 | MsG0280009523.01.T01:CDS |
| ACAATTGGCTCAAGAAAATG+TGG | 0.596703 | 2:-53616621 | MsG0280009523.01.T01:CDS |
| GAGAACGCGGAAGATGATCT+GGG | 0.596845 | 2:-53616984 | MsG0280009523.01.T01:CDS |
| CAACTTCGTTGGCATGAAGT+GGG | 0.608031 | 2:+53616835 | None:intergenic |
| TAATGAAGCTTCAACACGGA+CGG | 0.609817 | 2:+53616878 | None:intergenic |
| TGGAGTTCACAACCATGCGA+TGG | 0.616718 | 2:-53616532 | MsG0280009523.01.T01:CDS |
| TGGTGCGACTAGTATGTGAA+AGG | 0.629707 | 2:-53616683 | MsG0280009523.01.T01:CDS |
| CGACTAGTATGTGAAAGGAG+TGG | 0.647874 | 2:-53616678 | MsG0280009523.01.T01:CDS |
| CTTCGTTGGCATGAAGTGGG+AGG | 0.658421 | 2:+53616838 | None:intergenic |
| ATATCTTAGTAGGAAAACAA+AGG | 0.667648 | 2:-53616577 | MsG0280009523.01.T01:CDS |
| CATATAATGAAGCTTCAACA+CGG | 0.680268 | 2:+53616874 | None:intergenic |
| ACGTCGTCAAGCAAATAAGG+CGG | 0.684842 | 2:-53616748 | MsG0280009523.01.T01:CDS |
| CAATTGGCTCAAGAAAATGT+GGG | 0.702931 | 2:-53616620 | MsG0280009523.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCAAATTTTGTCAAAAAATA+TGG | - | Chr2:53616557-53616576 | MsG0280009523.01.T01:CDS | 20.0% |
| !!! | CCATATTTTTTGACAAAATT+TGG | + | Chr2:53616560-53616579 | None:intergenic | 20.0% |
| ! | ATATCTTAGTAGGAAAACAA+AGG | - | Chr2:53616931-53616950 | MsG0280009523.01.T01:CDS | 25.0% |
| ! | ATCTTTCAATTTAACGTTGT+CGG | + | Chr2:53616717-53616736 | None:intergenic | 25.0% |
| ! | CAACGTTAAATTGAAAGATA+AGG | - | Chr2:53616718-53616737 | MsG0280009523.01.T01:CDS | 25.0% |
| AAACTGAAGTATGAGACAAT+TGG | - | Chr2:53616872-53616891 | MsG0280009523.01.T01:CDS | 30.0% | |
| ATCAAGTTTGATCAATCCAA+TGG | - | Chr2:53616805-53616824 | MsG0280009523.01.T01:CDS | 30.0% | |
| CATATAATGAAGCTTCAACA+CGG | + | Chr2:53616637-53616656 | None:intergenic | 30.0% | |
| TGGAGATTGAACATTCTTAA+TGG | - | Chr2:53616956-53616975 | MsG0280009523.01.T01:CDS | 30.0% | |
| TGGTTAGCAAATATCTTAGT+AGG | - | Chr2:53616921-53616940 | MsG0280009523.01.T01:CDS | 30.0% | |
| TTAGTAGGAAAACAAAGGAA+TGG | - | Chr2:53616936-53616955 | MsG0280009523.01.T01:CDS | 30.0% | |
| !! | ATAAGGATGACTTGCTTAAT+TGG | - | Chr2:53616735-53616754 | MsG0280009523.01.T01:CDS | 30.0% |
| !! | GCTTCATTATATGTTGACTT+TGG | - | Chr2:53616644-53616663 | MsG0280009523.01.T01:CDS | 30.0% |
| !! | TAAGGATGACTTGCTTAATT+GGG | - | Chr2:53616736-53616755 | MsG0280009523.01.T01:CDS | 30.0% |
| !!! | GTCTCATACTTCAGTTTTTT+CGG | + | Chr2:53616869-53616888 | None:intergenic | 30.0% |
| ! | ACAATTGGCTCAAGAAAATG+TGG | - | Chr2:53616887-53616906 | MsG0280009523.01.T01:CDS | 35.0% |
| ! | CAATTGGCTCAAGAAAATGT+GGG | - | Chr2:53616888-53616907 | MsG0280009523.01.T01:CDS | 35.0% |
| AAAATGTGGGTGCATGTTCA+TGG | - | Chr2:53616901-53616920 | MsG0280009523.01.T01:CDS | 40.0% | |
| AGCTCCATCAATGTTTGGTT+TGG | + | Chr2:53616609-53616628 | None:intergenic | 40.0% | |
| GAAGCCAAACCAAACATTGA+TGG | - | Chr2:53616602-53616621 | MsG0280009523.01.T01:CDS | 40.0% | |
| TAATGAAGCTTCAACACGGA+CGG | + | Chr2:53616633-53616652 | None:intergenic | 40.0% | |
| !! | TTTGGTTTGGCTTCAACCTT+AGG | + | Chr2:53616596-53616615 | None:intergenic | 40.0% |
| ACGGAAGCTCCATCAATGTT+TGG | + | Chr2:53616614-53616633 | None:intergenic | 45.0% | |
| ACGTCGTCAAGCAAATAAGG+CGG | - | Chr2:53616760-53616779 | MsG0280009523.01.T01:CDS | 45.0% | |
| CAACTTCGTTGGCATGAAGT+GGG | + | Chr2:53616676-53616695 | None:intergenic | 45.0% | |
| CGACTAGTATGTGAAAGGAG+TGG | - | Chr2:53616830-53616849 | MsG0280009523.01.T01:CDS | 45.0% | |
| CTTAGTCGTGTCAACTTCGT+TGG | + | Chr2:53616687-53616706 | None:intergenic | 45.0% | |
| GGTACGTCGTCAAGCAAATA+AGG | - | Chr2:53616757-53616776 | MsG0280009523.01.T01:CDS | 45.0% | |
| TCAACTTCGTTGGCATGAAG+TGG | + | Chr2:53616677-53616696 | None:intergenic | 45.0% | |
| TCACATACTAGTCGCACCAT+TGG | + | Chr2:53616824-53616843 | None:intergenic | 45.0% | |
| TGGAGATGTCAAACTGCCTA+AGG | - | Chr2:53616577-53616596 | MsG0280009523.01.T01:CDS | 45.0% | |
| TGGTGCGACTAGTATGTGAA+AGG | - | Chr2:53616825-53616844 | MsG0280009523.01.T01:CDS | 45.0% | |
| ATAAATCCGGCTCCATCGCA+TGG | + | Chr2:53616991-53617010 | None:intergenic | 50.0% | |
| CGTCGTCAAGCAAATAAGGC+GGG | - | Chr2:53616761-53616780 | MsG0280009523.01.T01:CDS | 50.0% | |
| GAGAACGCGGAAGATGATCT+GGG | - | Chr2:53616524-53616543 | MsG0280009523.01.T01:CDS | 50.0% | |
| TGAGAACGCGGAAGATGATC+TGG | - | Chr2:53616523-53616542 | MsG0280009523.01.T01:CDS | 50.0% | |
| TGGAGTTCACAACCATGCGA+TGG | - | Chr2:53616976-53616995 | MsG0280009523.01.T01:CDS | 50.0% | |
| CTTCGTTGGCATGAAGTGGG+AGG | + | Chr2:53616673-53616692 | None:intergenic | 55.0% | |
| TCACAACCATGCGATGGAGC+CGG | - | Chr2:53616982-53617001 | MsG0280009523.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 53616518 | 53617012 | 53616518 | ID=MsG0280009523.01;Name=MsG0280009523.01 |
| Chr2 | mRNA | 53616518 | 53617012 | 53616518 | ID=MsG0280009523.01.T01;Parent=MsG0280009523.01;Name=MsG0280009523.01.T01;_AED=0.67;_eAED=0.67;_QI=0|-1|0|1|-1|1|1|0|164 |
| Chr2 | exon | 53616518 | 53617012 | 53616518 | ID=MsG0280009523.01.T01:exon:16348;Parent=MsG0280009523.01.T01 |
| Chr2 | CDS | 53616518 | 53617012 | 53616518 | ID=MsG0280009523.01.T01:cds;Parent=MsG0280009523.01.T01 |
| Gene Sequence |
| Protein sequence |
