AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009987.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009987.01.T01 MTR_2g075680 93.485 307 17 3 1 305 1 306 0.0 544
MsG0280009987.01.T01 MTR_2g075690 76.527 311 56 4 1 305 1 300 1.36e-163 457
MsG0280009987.01.T01 MTR_2g075700 75.082 305 70 5 1 305 1 299 4.63e-151 426
MsG0280009987.01.T01 MTR_7g073430 37.891 256 126 6 12 267 10 232 4.90e-49 165
MsG0280009987.01.T01 MTR_7g073380 38.983 236 115 5 12 245 11 219 3.34e-48 163
MsG0280009987.01.T01 MTR_2g075750 49.123 171 80 3 134 304 13 176 3.97e-47 157
MsG0280009987.01.T01 MTR_2g075610 46.893 177 86 4 131 304 11 182 1.81e-46 155
MsG0280009987.01.T01 MTR_8g005750 38.655 238 96 7 14 245 4 197 1.17e-40 143
MsG0280009987.01.T01 MTR_0002s1250 37.759 241 110 8 10 245 3 208 1.68e-40 142
MsG0280009987.01.T01 MTR_8g032510 38.655 238 116 7 11 245 4 214 6.17e-39 139
MsG0280009987.01.T01 MTR_3g093830 35.961 203 103 7 62 244 47 242 6.47e-28 110
MsG0280009987.01.T01 MTR_5g067700 39.831 118 68 2 132 249 90 204 6.94e-24 97.8
MsG0280009987.01.T01 MTR_7g117200 45.361 97 44 2 132 219 92 188 6.33e-20 88.6
MsG0280009987.01.T01 MTR_8g099350 29.384 211 112 7 10 208 6 191 6.49e-19 86.3
MsG0280009987.01.T01 MTR_3g090860 29.954 217 101 8 14 208 5 192 3.97e-18 84.0
MsG0280009987.01.T01 MTR_8g027860 43.158 95 45 2 125 211 105 198 1.36e-17 82.4
MsG0280009987.01.T01 MTR_5g067680 45.977 87 41 1 149 229 202 288 3.98e-17 81.3
MsG0280009987.01.T01 MTR_7g079010 40.952 105 51 4 105 206 99 195 4.99e-17 78.6
MsG0280009987.01.T01 MTR_7g028415 50.649 77 34 2 147 223 91 163 6.01e-16 74.7
MsG0280009987.01.T01 MTR_7g028710 50.649 77 34 2 147 223 91 163 6.01e-16 74.7
MsG0280009987.01.T01 MTR_2g075640 42.241 116 52 6 8 121 6 108 1.06e-15 72.4
MsG0280009987.01.T01 MTR_2g075730 41.379 116 53 6 8 121 6 108 2.76e-15 71.2
MsG0280009987.01.T01 MTR_7g109800 39.773 88 50 1 120 207 116 200 1.81e-14 72.8
MsG0280009987.01.T01 MTR_8g092140 50.000 60 27 1 147 206 158 214 2.50e-14 71.6
MsG0280009987.01.T01 MTR_1g086790 40.909 88 49 1 120 207 129 213 3.57e-14 72.4
MsG0280009987.01.T01 MTR_3g095080 49.180 61 28 1 147 207 166 223 4.23e-14 70.9
MsG0280009987.01.T01 MTR_3g095080 49.180 61 28 1 147 207 142 199 5.09e-14 70.5
MsG0280009987.01.T01 MTR_8g007270 40.000 90 48 2 120 206 122 208 5.19e-14 70.5
MsG0280009987.01.T01 MTR_5g073620 33.582 134 74 3 107 235 631 754 2.04e-13 71.2
MsG0280009987.01.T01 MTR_5g043880 39.326 89 48 2 148 233 123 208 2.39e-13 69.3
MsG0280009987.01.T01 MTR_4g122530 50.847 59 26 1 148 206 207 262 4.03e-13 69.7
MsG0280009987.01.T01 MTR_5g091390 52.542 59 25 1 148 206 156 211 4.25e-13 68.9
MsG0280009987.01.T01 MTR_7g100510 48.387 62 29 1 145 206 357 415 8.95e-13 68.6
MsG0280009987.01.T01 MTR_2g033820 45.946 74 37 1 148 221 202 272 1.15e-12 68.2
MsG0280009987.01.T01 MTR_3g104750 35.185 108 59 3 111 212 62 164 1.32e-12 65.1
MsG0280009987.01.T01 MTR_5g042920 50.000 60 27 1 147 206 318 374 1.46e-12 68.2
MsG0280009987.01.T01 MTR_4g094588 50.847 59 26 1 148 206 177 232 1.69e-12 67.4
MsG0280009987.01.T01 MTR_8g096730 45.000 60 30 1 147 206 68 124 1.80e-12 64.3
MsG0280009987.01.T01 MTR_5g085600 74.419 43 10 1 86 128 11 52 1.87e-12 62.0
MsG0280009987.01.T01 MTR_7g011820 48.333 60 28 1 147 206 408 464 1.92e-12 67.8
MsG0280009987.01.T01 MTR_7g011820 45.902 61 29 2 146 206 225 281 5.39e-11 63.5
MsG0280009987.01.T01 MTR_4g082580 48.333 60 28 1 147 206 276 332 3.31e-12 67.0
MsG0280009987.01.T01 MTR_1g009613 34.286 105 62 4 104 206 218 317 4.99e-12 66.2
MsG0280009987.01.T01 MTR_4g127040 37.349 83 50 1 124 206 220 300 7.26e-12 65.5
MsG0280009987.01.T01 MTR_8g028565 37.634 93 51 2 121 213 132 217 1.28e-11 64.7
MsG0280009987.01.T01 MTR_3g056100 46.667 60 29 1 147 206 400 456 1.37e-11 65.5
MsG0280009987.01.T01 MTR_3g056100 46.667 60 29 1 147 206 413 469 1.47e-11 65.5
MsG0280009987.01.T01 MTR_5g094430 46.667 60 29 1 147 206 362 418 1.59e-11 65.1
MsG0280009987.01.T01 MTR_3g056100 46.667 60 29 1 147 206 256 312 1.97e-11 64.7
MsG0280009987.01.T01 MTR_3g056100 46.667 60 29 1 147 206 269 325 2.32e-11 64.3
MsG0280009987.01.T01 MTR_5g094430 46.667 60 29 1 147 206 228 284 2.41e-11 64.3
MsG0280009987.01.T01 MTR_5g094430 46.667 60 29 1 147 206 250 306 2.55e-11 64.3
MsG0280009987.01.T01 MTR_1g015140 43.939 66 34 1 142 207 95 157 4.29e-11 60.8
MsG0280009987.01.T01 MTR_5g074400 48.333 60 28 1 147 206 418 474 5.71e-11 63.5
MsG0280009987.01.T01 MTR_7g062220 51.667 60 26 1 147 206 122 178 5.93e-11 62.8
MsG0280009987.01.T01 MTR_7g110720 41.463 82 38 2 125 206 173 244 7.49e-11 62.8
MsG0280009987.01.T01 MTR_3g009470 37.079 89 48 2 147 230 493 578 8.52e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009987.01.T01 AT5G22570 33.163 196 105 5 64 259 42 211 8.02e-25 101
MsG0280009987.01.T01 AT3G56400 32.020 203 113 4 7 208 1 179 8.07e-25 101
MsG0280009987.01.T01 AT5G01900 32.487 197 101 4 13 209 6 170 3.06e-23 96.7
MsG0280009987.01.T01 AT1G66560 60.294 68 26 1 149 215 103 170 3.52e-22 93.6
MsG0280009987.01.T01 AT1G66600 42.857 112 48 3 148 243 102 213 3.93e-22 93.2
MsG0280009987.01.T01 AT1G66550 55.882 68 29 1 149 215 103 170 1.73e-20 89.0
MsG0280009987.01.T01 AT1G66550 55.882 68 29 1 149 215 108 175 2.31e-20 88.6
MsG0280009987.01.T01 AT4G11070 29.936 157 101 2 61 208 44 200 1.94e-19 87.0
MsG0280009987.01.T01 AT2G46400 30.612 196 99 6 13 208 5 163 2.40e-19 86.7
MsG0280009987.01.T01 AT1G80590 41.379 87 51 0 128 214 64 150 4.85e-19 84.7
MsG0280009987.01.T01 AT2G40750 31.068 206 130 6 13 210 12 213 1.33e-18 85.1
MsG0280009987.01.T01 AT4G11070 29.648 199 105 4 10 208 5 168 3.09e-18 83.2
MsG0280009987.01.T01 AT4G23810 28.856 201 111 5 89 260 91 288 6.18e-18 83.2
MsG0280009987.01.T01 AT5G24110 33.987 153 73 3 63 208 41 172 7.44e-17 79.7
MsG0280009987.01.T01 AT2G40740 52.381 63 30 0 149 211 173 235 1.35e-16 79.0
MsG0280009987.01.T01 AT2G40740 52.381 63 30 0 149 211 182 244 1.70e-16 78.6
MsG0280009987.01.T01 AT2G46130 53.030 66 26 2 142 206 23 84 9.70e-15 69.7
MsG0280009987.01.T01 AT4G39410 42.553 94 48 3 125 215 196 286 2.14e-14 72.8
MsG0280009987.01.T01 AT4G18170 41.379 87 48 1 120 206 143 226 3.16e-14 72.4
MsG0280009987.01.T01 AT5G49520 53.333 60 25 1 148 207 220 276 4.30e-14 72.4
MsG0280009987.01.T01 AT2G44745 43.902 82 40 2 128 206 121 199 6.41e-14 70.1
MsG0280009987.01.T01 AT1G64000 51.667 60 26 1 147 206 112 168 7.71e-14 69.3
MsG0280009987.01.T01 AT5G41570 38.636 88 48 2 122 206 68 152 1.71e-13 68.2
MsG0280009987.01.T01 AT2G37260 50.847 59 26 1 148 206 348 403 1.78e-13 70.9
MsG0280009987.01.T01 AT2G37260 50.847 59 26 1 148 206 266 321 2.09e-13 70.1
MsG0280009987.01.T01 AT2G37260 50.847 59 26 1 148 206 268 323 2.17e-13 70.1
MsG0280009987.01.T01 AT2G47260 39.773 88 50 1 120 207 145 229 2.82e-13 69.7
MsG0280009987.01.T01 AT1G29860 41.000 100 54 2 109 206 94 190 3.06e-13 69.3
MsG0280009987.01.T01 AT1G69310 49.153 59 27 1 148 206 146 201 5.08e-13 68.6
MsG0280009987.01.T01 AT1G69310 49.153 59 27 1 148 206 146 201 5.08e-13 68.6
MsG0280009987.01.T01 AT1G69310 49.153 59 27 1 148 206 146 201 5.08e-13 68.6
MsG0280009987.01.T01 AT1G13960 50.000 60 27 1 147 206 407 463 7.47e-13 69.3
MsG0280009987.01.T01 AT2G03340 50.000 60 27 1 147 206 413 469 1.46e-12 68.2
MsG0280009987.01.T01 AT1G13960 50.000 60 27 1 147 206 254 310 1.70e-12 67.8
MsG0280009987.01.T01 AT5G46350 47.692 65 31 1 142 206 176 237 1.76e-12 67.4
MsG0280009987.01.T01 AT5G13080 49.180 61 28 1 147 207 65 122 2.79e-12 63.9
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 339 433 3.53e-12 67.0
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 307 401 4.07e-12 67.0
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 379 473 4.23e-12 67.0
MsG0280009987.01.T01 AT2G04880 45.902 61 29 2 146 206 108 164 4.47e-12 66.6
MsG0280009987.01.T01 AT2G04880 46.667 60 29 1 147 206 281 337 3.32e-11 63.9
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 203 297 5.23e-12 66.2
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 203 297 5.23e-12 66.2
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 203 297 5.23e-12 66.2
MsG0280009987.01.T01 AT4G26640 40.000 100 49 4 147 240 203 297 5.23e-12 66.2
MsG0280009987.01.T01 AT2G04880 45.902 61 29 2 146 206 108 164 5.27e-12 66.6
MsG0280009987.01.T01 AT2G04880 46.667 60 29 1 147 206 305 361 4.64e-11 63.5
MsG0280009987.01.T01 AT2G23320 34.188 117 71 2 94 206 181 295 7.60e-12 65.5
MsG0280009987.01.T01 AT3G01970 47.541 61 29 1 147 207 63 120 1.89e-11 61.6
MsG0280009987.01.T01 AT5G26170 40.278 72 35 2 146 217 110 173 2.13e-11 62.0
MsG0280009987.01.T01 AT4G26440 50.000 58 25 2 149 206 178 231 4.71e-11 63.9
MsG0280009987.01.T01 AT2G30590 36.145 83 51 1 124 206 288 368 5.72e-11 63.2
MsG0280009987.01.T01 AT3G01080 46.154 65 32 1 142 206 337 398 7.06e-11 63.2
MsG0280009987.01.T01 AT3G01080 46.154 65 32 1 142 206 299 360 9.42e-11 62.8
MsG0280009987.01.T01 AT3G62340 48.333 60 28 1 148 207 117 173 9.75e-11 61.6

Find 51 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCAGCAACAATATTTA+AGG 0.169221 2:-62479010 None:intergenic
CTTTGGCTTCCAACAAATTA+TGG 0.175004 2:+62478853 MsG0280009987.01.T01:CDS
TTACCATTCAGACTTAAATT+TGG 0.184409 2:+62481197 MsG0280009987.01.T01:CDS
AGATATATACCTGAAATATT+TGG 0.232157 2:-62480914 None:intergenic
TAAGATGAAGGAGGAGGATT+TGG 0.258950 2:+62479155 MsG0280009987.01.T01:CDS
TCACAAATGCCAAATATTTC+AGG 0.281113 2:+62480905 MsG0280009987.01.T01:CDS
TCAAATATTAGAGAAGTTAA+AGG 0.289246 2:+62478958 MsG0280009987.01.T01:CDS
AGAGTCATCAGAGGAGAAAA+TGG 0.295638 2:-62481223 None:intergenic
AAACATCAAAATCGCATAAC+TGG 0.325641 2:-62481407 None:intergenic
ATAACCATCATCAATCAATT+TGG 0.330019 2:-62480854 None:intergenic
TCCAACAAATTATGGCAAAA+AGG 0.332872 2:+62478861 MsG0280009987.01.T01:CDS
TTGTACCGGACTACATATTA+TGG 0.352265 2:+62481153 MsG0280009987.01.T01:CDS
GATTCTCCGGTGAGAACAAT+TGG 0.405307 2:-62481383 None:intergenic
TATAGGAACCGCCACATCAT+TGG 0.416491 2:-62479097 None:intergenic
TCTTCAGCAACAATATTTAA+GGG 0.422613 2:-62479009 None:intergenic
AAGATGAAGGAGGAGGATTT+GGG 0.428960 2:+62479156 MsG0280009987.01.T01:CDS
AGTAATCAAGAATATCCGTT+TGG 0.452427 2:+62481279 MsG0280009987.01.T01:CDS
ATATAATGGAGAATATGCTT+TGG 0.459020 2:+62478836 None:intergenic
CAAATATTAGAGAAGTTAAA+GGG 0.464900 2:+62478959 MsG0280009987.01.T01:CDS
ATTCCAAATTTAAGTCTGAA+TGG 0.467467 2:-62481200 None:intergenic
GCCTCCAAATTGATTGATGA+TGG 0.475537 2:+62480850 MsG0280009987.01.T01:CDS
AACTAATTGTCATAAGATGA+AGG 0.480263 2:+62479143 MsG0280009987.01.T01:CDS
CCACTTCTTGCATCTACAAA+CGG 0.482853 2:+62481318 MsG0280009987.01.T01:CDS
ATGTATGCAGGAGCTACTAT+AGG 0.489699 2:+62481061 MsG0280009987.01.T01:intron
TCATGATGTATCTCTTCCTT+AGG 0.501188 2:-62481345 None:intergenic
TCGCATAACTGGAGATTCTC+CGG 0.520000 2:-62481396 None:intergenic
AAAAGAACCCTTCGTTGTAC+CGG 0.521119 2:+62481139 MsG0280009987.01.T01:CDS
ATCTACAAACGGAGATCCTA+AGG 0.526669 2:+62481329 MsG0280009987.01.T01:CDS
TAGGTCAAGTGCACCAACTT+GGG 0.530587 2:+62480819 MsG0280009987.01.T01:intron
TTAGGTCAAGTGCACCAACT+TGG 0.536533 2:+62480818 MsG0280009987.01.T01:intron
ACCATCATCAATCAATTTGG+AGG 0.542680 2:-62480851 None:intergenic
GATGACCATAATATGTAGTC+CGG 0.554702 2:-62481158 None:intergenic
GGTTATACATGGAGAAAGTA+CGG 0.556459 2:+62480871 MsG0280009987.01.T01:CDS
ATGTAGTCCGGTACAACGAA+GGG 0.569798 2:-62481146 None:intergenic
TGATTGATGATGGTTATACA+TGG 0.570958 2:+62480860 MsG0280009987.01.T01:CDS
TGCACCAACTTGGGAAAAGA+CGG 0.575025 2:+62480828 MsG0280009987.01.T01:CDS
TCAAAACCAATTGTTCTCAC+CGG 0.575943 2:+62481377 MsG0280009987.01.T01:CDS
TTGTCATAAGATGAAGGAGG+AGG 0.580122 2:+62479149 MsG0280009987.01.T01:CDS
ATGAAGGAGGAGGATTTGGG+TGG 0.585719 2:+62479159 MsG0280009987.01.T01:CDS
AATGGTGGTGACTGTCCAAA+CGG 0.615715 2:-62481294 None:intergenic
CCGTTTGTAGATGCAAGAAG+TGG 0.617465 2:-62481318 None:intergenic
TGCTGAAGATCTTGTGCGTG+AGG 0.635228 2:+62479023 MsG0280009987.01.T01:CDS
GCTTATGAGAGGACGTGACA+TGG 0.640238 2:+62478897 MsG0280009987.01.T01:CDS
TATGTAGTCCGGTACAACGA+AGG 0.640543 2:-62481147 None:intergenic
TGGTAAAGACTCCAATGATG+TGG 0.645157 2:+62479086 MsG0280009987.01.T01:CDS
TAATATAGAAGAGTCATCAG+AGG 0.645563 2:-62481232 None:intergenic
ATGGAAGATGAGCTTATGAG+AGG 0.648590 2:+62478886 MsG0280009987.01.T01:CDS
GTAGATGCAAGAAGTGGCAA+TGG 0.654729 2:-62481312 None:intergenic
GATGCAAGAAGTGGCAATGG+TGG 0.680588 2:-62481309 None:intergenic
TAAAGACTCCAATGATGTGG+CGG 0.681692 2:+62479089 MsG0280009987.01.T01:CDS
TAATTGTCATAAGATGAAGG+AGG 0.758287 2:+62479146 MsG0280009987.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTATAAAATATTAAT+AGG - Chr2:62480712-62480731 None:intergenic 0.0%
!! ATATATATATATATATATAT+CGG - Chr2:62479576-62479557 None:intergenic 0.0%
!!! TATTTTTATAATATCAAACA+AGG + Chr2:62479372-62479391 MsG0280009987.01.T01:intron 10.0%
!!! TTTCATATTATTTTTTTTGA+GGG + Chr2:62479329-62479348 MsG0280009987.01.T01:intron 10.0%
!!! TTTTCATATTATTTTTTTTG+AGG + Chr2:62479328-62479347 MsG0280009987.01.T01:intron 10.0%
!! ATAAAATTTAATATGTATGC+AGG + Chr2:62481049-62481068 MsG0280009987.01.T01:intron 15.0%
!! ATATGAAAATTAATATAGTG+AGG - Chr2:62479317-62479336 None:intergenic 15.0%
!! ATCAATCTTATAACTTAATT+TGG - Chr2:62479471-62479490 None:intergenic 15.0%
!! TTAACTTTGTAAGTATAAAA+TGG - Chr2:62480437-62480456 None:intergenic 15.0%
!! TTATATTTACGTAGTATAAT+TGG + Chr2:62480757-62480776 MsG0280009987.01.T01:intron 15.0%
!!! ATATAATTTTTTTTCAGTCT+AGG - Chr2:62480546-62480565 None:intergenic 15.0%
!!! TATAATTTTTTTTCAGTCTA+GGG - Chr2:62480545-62480564 None:intergenic 15.0%
!! AAAATAATTCATGCAATCAT+GGG + Chr2:62480270-62480289 MsG0280009987.01.T01:intron 20.0%
!! AGATATATACCTGAAATATT+TGG - Chr2:62480917-62480936 None:intergenic 20.0%
!! CAAATATTAGAGAAGTTAAA+GGG + Chr2:62478959-62478978 MsG0280009987.01.T01:CDS 20.0%
!! CAAATTAGAATGTTTGTTTA+GGG + Chr2:62479928-62479947 MsG0280009987.01.T01:intron 20.0%
!! GAAAAATCTTTAACAGTTAT+AGG - Chr2:62479117-62479136 None:intergenic 20.0%
!! TAAACAAACATTCTAATTTG+AGG - Chr2:62479928-62479947 None:intergenic 20.0%
!! TCAAATATTAGAGAAGTTAA+AGG + Chr2:62478958-62478977 MsG0280009987.01.T01:CDS 20.0%
!! TCAAATTAGAATGTTTGTTT+AGG + Chr2:62479927-62479946 MsG0280009987.01.T01:intron 20.0%
!! TTGTAAGTATAAAATGGTTT+GGG - Chr2:62480431-62480450 None:intergenic 20.0%
!! TTTGTAAGTATAAAATGGTT+TGG - Chr2:62480432-62480451 None:intergenic 20.0%
!!! ATAATTTTTTTTCAGTCTAG+GGG - Chr2:62480544-62480563 None:intergenic 20.0%
!!! GATATTTTTGTCTTCATATT+AGG + Chr2:62480800-62480819 MsG0280009987.01.T01:intron 20.0%
!!! GTTTAAAACTTTAGAACATT+TGG - Chr2:62479408-62479427 None:intergenic 20.0%
! AACTAATTGTCATAAGATGA+AGG + Chr2:62479143-62479162 MsG0280009987.01.T01:CDS 25.0%
! ATAACCATCATCAATCAATT+TGG - Chr2:62480857-62480876 None:intergenic 25.0%
! ATATGATCATCATTACTCAA+TGG + Chr2:62480673-62480692 MsG0280009987.01.T01:intron 25.0%
! ATCTTCAGCAACAATATTTA+AGG - Chr2:62479013-62479032 None:intergenic 25.0%
! ATGATGATCATATATATGTC+TGG - Chr2:62480666-62480685 None:intergenic 25.0%
! ATTCCAAATTTAAGTCTGAA+TGG - Chr2:62481203-62481222 None:intergenic 25.0%
! ATTTGAATGTTACAGATTGA+TGG - Chr2:62481014-62481033 None:intergenic 25.0%
! GAAAATAATTCATGCAATCA+TGG + Chr2:62480269-62480288 MsG0280009987.01.T01:intron 25.0%
! GAAACAAGTCAAATACTTAT+AGG - Chr2:62479278-62479297 None:intergenic 25.0%
! TAGGAACATAGTATAAAACA+TGG - Chr2:62479259-62479278 None:intergenic 25.0%
! TCTTCAGCAACAATATTTAA+GGG - Chr2:62479012-62479031 None:intergenic 25.0%
! TTACCATTCAGACTTAAATT+TGG + Chr2:62481197-62481216 MsG0280009987.01.T01:CDS 25.0%
! TTGAGATTTAATTAGAGCTA+TGG - Chr2:62480470-62480489 None:intergenic 25.0%
! TTTACTTCCATGTTTGTTTA+GGG + Chr2:62479867-62479886 MsG0280009987.01.T01:intron 25.0%
!! TTTTACTTCCATGTTTGTTT+AGG + Chr2:62479866-62479885 MsG0280009987.01.T01:intron 25.0%
!!! AAGTATTTGACTTGTTTCAA+AGG + Chr2:62479280-62479299 MsG0280009987.01.T01:intron 25.0%
!!! TCGTTAACTTGTCTTTTTAA+GGG - Chr2:62480581-62480600 None:intergenic 25.0%
!!! TTCGTTAACTTGTCTTTTTA+AGG - Chr2:62480582-62480601 None:intergenic 25.0%
AAACATCAAAATCGCATAAC+TGG - Chr2:62481410-62481429 None:intergenic 30.0%
AAATTATGGCAAAAAGGCAA+TGG + Chr2:62478867-62478886 MsG0280009987.01.T01:CDS 30.0%
AAGAAGTAAGAAAAACCAGT+TGG - Chr2:62480096-62480115 None:intergenic 30.0%
ACAAAAACCCTAAACAAACA+TGG - Chr2:62479877-62479896 None:intergenic 30.0%
ACAAACATTCTAATTTGAGG+TGG - Chr2:62479925-62479944 None:intergenic 30.0%
AGTAATCAAGAATATCCGTT+TGG + Chr2:62481279-62481298 MsG0280009987.01.T01:CDS 30.0%
ATGATCATATATATGTCTGG+AGG - Chr2:62480663-62480682 None:intergenic 30.0%
TAATATAGAAGAGTCATCAG+AGG - Chr2:62481235-62481254 None:intergenic 30.0%
TAATTGTCATAAGATGAAGG+AGG + Chr2:62479146-62479165 MsG0280009987.01.T01:CDS 30.0%
TCAACTTTCAATCTCAAGTT+TGG + Chr2:62480382-62480401 MsG0280009987.01.T01:intron 30.0%
TCACAAATGCCAAATATTTC+AGG + Chr2:62480905-62480924 MsG0280009987.01.T01:CDS 30.0%
TCCAACAAATTATGGCAAAA+AGG + Chr2:62478861-62478880 MsG0280009987.01.T01:CDS 30.0%
TGGATAATTCATGTGAGATT+GGG + Chr2:62480402-62480421 MsG0280009987.01.T01:intron 30.0%
TTGGATAATTCATGTGAGAT+TGG + Chr2:62480401-62480420 MsG0280009987.01.T01:intron 30.0%
! GGTTTTTCTTACTTCTTTGT+CGG + Chr2:62480099-62480118 MsG0280009987.01.T01:intron 30.0%
! GTTTTTCTTACTTCTTTGTC+GGG + Chr2:62480100-62480119 MsG0280009987.01.T01:intron 30.0%
!! TGATTGATGATGGTTATACA+TGG + Chr2:62480860-62480879 MsG0280009987.01.T01:CDS 30.0%
AAGAAGGAAGAAAAACCAGT+TGG - Chr2:62479829-62479848 None:intergenic 35.0%
AAGTAAGAAAAACCAGTTGG+CGG - Chr2:62480093-62480112 None:intergenic 35.0%
ACCATCATCAATCAATTTGG+AGG - Chr2:62480854-62480873 None:intergenic 35.0%
GATGACCATAATATGTAGTC+CGG - Chr2:62481161-62481180 None:intergenic 35.0%
GGTTATACATGGAGAAAGTA+CGG + Chr2:62480871-62480890 MsG0280009987.01.T01:CDS 35.0%
TCAAAACCAATTGTTCTCAC+CGG + Chr2:62481377-62481396 MsG0280009987.01.T01:CDS 35.0%
TCATGATGTATCTCTTCCTT+AGG - Chr2:62481348-62481367 None:intergenic 35.0%
TTGTACCGGACTACATATTA+TGG + Chr2:62481153-62481172 MsG0280009987.01.T01:CDS 35.0%
! CTTTGGCTTCCAACAAATTA+TGG + Chr2:62478853-62478872 MsG0280009987.01.T01:CDS 35.0%
! GGTTTTTCTTCCTTCTTTGT+CGG + Chr2:62479832-62479851 MsG0280009987.01.T01:intron 35.0%
! GTTTTTCTTCCTTCTTTGTC+GGG + Chr2:62479833-62479852 MsG0280009987.01.T01:intron 35.0%
!! GCCTTTTTGCCATAATTTGT+TGG - Chr2:62478865-62478884 None:intergenic 35.0%
!! TTTTAATTCACAGCACAGCT+AGG + Chr2:62480637-62480656 MsG0280009987.01.T01:intron 35.0%
!!! ACACTTTTGCTGTTGAACAA+TGG + Chr2:62479066-62479085 MsG0280009987.01.T01:CDS 35.0%
!!! ATTTTTTTTCAGTCTAGGGG+AGG - Chr2:62480541-62480560 None:intergenic 35.0%
!!! TTTTTTTTCAGTCTAGGGGA+GGG - Chr2:62480540-62480559 None:intergenic 35.0%
AAAAGAACCCTTCGTTGTAC+CGG + Chr2:62481139-62481158 MsG0280009987.01.T01:CDS 40.0%
AAGATGAAGGAGGAGGATTT+GGG + Chr2:62479156-62479175 MsG0280009987.01.T01:CDS 40.0%
AAGGAAGAAAAACCAGTTGG+CGG - Chr2:62479826-62479845 None:intergenic 40.0%
AGAGTCATCAGAGGAGAAAA+TGG - Chr2:62481226-62481245 None:intergenic 40.0%
ATCTACAAACGGAGATCCTA+AGG + Chr2:62481329-62481348 MsG0280009987.01.T01:CDS 40.0%
ATGGAAGATGAGCTTATGAG+AGG + Chr2:62478886-62478905 MsG0280009987.01.T01:CDS 40.0%
ATGTATGCAGGAGCTACTAT+AGG + Chr2:62481061-62481080 MsG0280009987.01.T01:intron 40.0%
CCACTTCTTGCATCTACAAA+CGG + Chr2:62481318-62481337 MsG0280009987.01.T01:CDS 40.0%
GACAATTTACCCGACAAAGA+AGG - Chr2:62479845-62479864 None:intergenic 40.0%
GCCTCCAAATTGATTGATGA+TGG + Chr2:62480850-62480869 MsG0280009987.01.T01:CDS 40.0%
TAAAGACTCCAATGATGTGG+CGG + Chr2:62479089-62479108 MsG0280009987.01.T01:CDS 40.0%
TAAGATGAAGGAGGAGGATT+TGG + Chr2:62479155-62479174 MsG0280009987.01.T01:CDS 40.0%
TGGTAAAGACTCCAATGATG+TGG + Chr2:62479086-62479105 MsG0280009987.01.T01:CDS 40.0%
TTGTCATAAGATGAAGGAGG+AGG + Chr2:62479149-62479168 MsG0280009987.01.T01:CDS 40.0%
!! GTGGTTTTTGTTTCTCTCTC+TGG - Chr2:62479906-62479925 None:intergenic 40.0%
!!! GGTGAGAACAATTGGTTTTG+AGG - Chr2:62481378-62481397 None:intergenic 40.0%
!!! GTTCGACACTTTCGAGTTTT+TGG - Chr2:62479214-62479233 None:intergenic 40.0%
!!! TTTTTTTCAGTCTAGGGGAG+GGG - Chr2:62480539-62480558 None:intergenic 40.0%
ATGTAGTCCGGTACAACGAA+GGG - Chr2:62481149-62481168 None:intergenic 45.0%
CCGTTTGTAGATGCAAGAAG+TGG - Chr2:62481321-62481340 None:intergenic 45.0%
GAGGAGAGGGAGAAAAATGA+AGG - Chr2:62479804-62479823 None:intergenic 45.0%
GATTCTCCGGTGAGAACAAT+TGG - Chr2:62481386-62481405 None:intergenic 45.0%
GTAGATGCAAGAAGTGGCAA+TGG - Chr2:62481315-62481334 None:intergenic 45.0%
TAAGAAAAACCAGTTGGCGG+AGG - Chr2:62480090-62480109 None:intergenic 45.0%
TAGGTCAAGTGCACCAACTT+GGG + Chr2:62480819-62480838 MsG0280009987.01.T01:intron 45.0%
TATAGGAACCGCCACATCAT+TGG - Chr2:62479100-62479119 None:intergenic 45.0%
TATGTAGTCCGGTACAACGA+AGG - Chr2:62481150-62481169 None:intergenic 45.0%
TCGCATAACTGGAGATTCTC+CGG - Chr2:62481399-62481418 None:intergenic 45.0%
TGCACCAACTTGGGAAAAGA+CGG + Chr2:62480828-62480847 MsG0280009987.01.T01:CDS 45.0%
TTAGGTCAAGTGCACCAACT+TGG + Chr2:62480818-62480837 MsG0280009987.01.T01:intron 45.0%
! AATGGTGGTGACTGTCCAAA+CGG - Chr2:62481297-62481316 None:intergenic 45.0%
!!! TTTTTTCAGTCTAGGGGAGG+GGG - Chr2:62480538-62480557 None:intergenic 45.0%
!!! GAATTTATTTAATATTTTAT+AGG - Chr2:62480500-62480519 None:intergenic 5.0%
ATGAAGGAGGAGGATTTGGG+TGG + Chr2:62479159-62479178 MsG0280009987.01.T01:CDS 50.0%
GAAGAAAAACCAGTTGGCGG+AGG - Chr2:62479823-62479842 None:intergenic 50.0%
GATGCAAGAAGTGGCAATGG+TGG - Chr2:62481312-62481331 None:intergenic 50.0%
GCTTATGAGAGGACGTGACA+TGG + Chr2:62478897-62478916 MsG0280009987.01.T01:CDS 50.0%
TGCTGAAGATCTTGTGCGTG+AGG + Chr2:62479023-62479042 MsG0280009987.01.T01:CDS 50.0%
AAAACCAGTTGGCGGAGGAG+AGG - Chr2:62479818-62479837 None:intergenic 55.0%
AAACCAGTTGGCGGAGGAGA+GGG - Chr2:62479817-62479836 None:intergenic 55.0%
! GAGGCCGTCTTTTCCCAAGT+TGG - Chr2:62480835-62480854 None:intergenic 55.0%
CAGTCTAGGGGAGGGGGATT+TGG - Chr2:62480532-62480551 None:intergenic 60.0%
TCTCCCTCTCCTCCGCCAAC+TGG + Chr2:62479811-62479830 MsG0280009987.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 62478841 62481482 62478841 ID=MsG0280009987.01;Name=MsG0280009987.01
Chr2 mRNA 62478841 62481482 62478841 ID=MsG0280009987.01.T01;Parent=MsG0280009987.01;Name=MsG0280009987.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|305
Chr2 exon 62478841 62479241 62478841 ID=MsG0280009987.01.T01:exon:14090;Parent=MsG0280009987.01.T01
Chr2 exon 62480822 62480926 62480822 ID=MsG0280009987.01.T01:exon:14091;Parent=MsG0280009987.01.T01
Chr2 exon 62481071 62481482 62481071 ID=MsG0280009987.01.T01:exon:14092;Parent=MsG0280009987.01.T01
Chr2 CDS 62478841 62479241 62478841 ID=MsG0280009987.01.T01:cds;Parent=MsG0280009987.01.T01
Chr2 CDS 62480822 62480926 62480822 ID=MsG0280009987.01.T01:cds;Parent=MsG0280009987.01.T01
Chr2 CDS 62481071 62481482 62481071 ID=MsG0280009987.01.T01:cds;Parent=MsG0280009987.01.T01
Gene Sequence

>MsG0280009987.01.T01

ATGGAGAATATGCTTTGGCTTCCAACAAATTATGGCAAAAAGGCAATGGAAGATGAGCTTATGAGAGGACGTGACATGGCAAATCAATTACTTGAAGTACTAACTTTTGATGATAAGTCAAATATTAGAGAAGTTAAAGGGTCAAACACAAATTCATCAAAAGTGTTACCCTTAAATATTGTTGCTGAAGATCTTGTGCGTGAGGTGCTCAAATCATTGACAAACACACTTTTGCTGTTGAACAATGGTAAAGACTCCAATGATGTGGCGGTTCCTATAACTGTTAAAGATTTTTCTTTTTCAACTAATTGTCATAAGATGAAGGAGGAGGATTTGGGTGGAGCTTGCAAGAAACTCAAAACTCTCAACACCAAAAACTCGAAAGTGTCGAACAAGAGAAAGTCAAGTGCACCAACTTGGGAAAAGACGGCCTCCAAATTGATTGATGATGGTTATACATGGAGAAAGTACGGTCAAAAAATGATCACAAATGCCAAATATTTCAGGAGCTACTATAGGTGCACTCACATGAATGATCAACAATGTGAAGCAATCAAACATGTTCAAAGAATACAAAAGAACCCTTCGTTGTACCGGACTACATATTATGGTCATCACACTTGCAAAAGCTCTTACCATTCAGACTTAAATTTGGAATCCATTTTCTCCTCTGATGACTCTTCTATATTACTTAGTTTCGATAACAACATTTCAAGTAATCAAGAATATCCGTTTGGACAGTCACCACCATTGCCACTTCTTGCATCTACAAACGGAGATCCTAAGGAAGAGATACATCATGATCATTTTCCTCAAAACCAATTGTTCTCACCGGAGAATCTCCAGTTATGCGATTTTGATGTTTATTTTGATTATTTGAGACATGTCACTGAGTCATCATCGAGTGAATCTTTTTAG
Protein sequence

>MsG0280009987.01.T01

MENMLWLPTNYGKKAMEDELMRGRDMANQLLEVLTFDDKSNIREVKGSNTNSSKVLPLNIVAEDLVREVLKSLTNTLLLLNNGKDSNDVAVPITVKDFSFSTNCHKMKEEDLGGACKKLKTLNTKNSKVSNKRKSSAPTWEKTASKLIDDGYTWRKYGQKMITNAKYFRSYYRCTHMNDQQCEAIKHVQRIQKNPSLYRTTYYGHHTCKSSYHSDLNLESIFSSDDSSILLSFDNNISSNQEYPFGQSPPLPLLASTNGDPKEEIHHDHFPQNQLFSPENLQLCDFDVYFDYLRHVTESSSSESF*