AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010009.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010009.01.T01 MTR_2g076210 81.199 367 19 1 1 317 1 367 0.0 602
MsG0280010009.01.T01 MTR_2g076200 64.247 372 74 6 1 317 4 371 2.90e-160 452
MsG0280010009.01.T01 MTR_2g020280 41.389 360 127 8 37 317 39 393 1.62e-78 244
MsG0280010009.01.T01 MTR_5g020580 41.257 366 126 12 37 317 55 416 3.74e-75 237
MsG0280010009.01.T01 MTR_1g088960 39.612 361 130 9 37 317 50 402 4.05e-73 231
MsG0280010009.01.T01 MTR_1g098790 37.922 385 133 10 35 317 51 431 3.01e-72 229
MsG0280010009.01.T01 MTR_8g077195 38.786 379 145 9 22 317 38 412 3.55e-70 224
MsG0280010009.01.T01 MTR_1g022370 40.730 356 133 13 37 317 70 422 1.64e-69 222
MsG0280010009.01.T01 MTR_2g007930 37.368 380 133 12 37 317 54 427 1.97e-69 222
MsG0280010009.01.T01 MTR_2g020280 48.120 266 104 7 81 317 34 294 3.56e-69 217
MsG0280010009.01.T01 MTR_8g077620 35.674 356 150 11 25 310 40 386 1.56e-47 164
MsG0280010009.01.T01 MTR_8g077675 30.541 370 163 11 25 310 36 395 5.54e-37 136
MsG0280010009.01.T01 MTR_8g077650 38.115 244 124 10 83 309 95 328 1.88e-29 115
MsG0280010009.01.T01 MTR_8g077640 32.551 341 114 13 34 307 92 383 1.10e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010009.01.T01 AT1G53320 53.906 384 105 8 1 317 1 379 3.17e-123 358
MsG0280010009.01.T01 AT2G47900 38.611 360 137 8 37 317 52 406 9.03e-78 243
MsG0280010009.01.T01 AT2G47900 38.611 360 137 8 37 317 52 406 9.03e-78 243
MsG0280010009.01.T01 AT2G47900 38.504 361 137 8 37 317 52 407 9.80e-78 243
MsG0280010009.01.T01 AT2G18280 39.205 352 143 7 34 317 45 393 6.10e-72 228
MsG0280010009.01.T01 AT2G18280 39.205 352 143 7 34 317 45 393 6.10e-72 228
MsG0280010009.01.T01 AT1G25280 38.107 391 128 11 37 317 59 445 3.88e-69 222
MsG0280010009.01.T01 AT1G76900 34.107 431 150 9 18 317 28 455 2.21e-68 220
MsG0280010009.01.T01 AT1G76900 34.107 431 150 9 18 317 28 455 2.21e-68 220
MsG0280010009.01.T01 AT1G76900 34.107 431 150 9 18 317 28 455 2.21e-68 220
MsG0280010009.01.T01 AT3G06380 38.843 363 137 10 31 317 27 380 5.54e-68 217
MsG0280010009.01.T01 AT5G18680 37.534 373 142 12 25 317 28 389 3.13e-62 202
MsG0280010009.01.T01 AT1G43640 35.770 383 140 11 35 317 53 429 6.32e-62 203
MsG0280010009.01.T01 AT1G47270 36.975 357 145 11 33 317 40 388 1.79e-59 195
MsG0280010009.01.T01 AT1G47270 36.975 357 145 11 33 317 65 413 2.31e-59 196
MsG0280010009.01.T01 AT1G47270 36.975 357 145 11 33 317 64 412 2.56e-59 196
MsG0280010009.01.T01 AT3G06380 43.561 264 115 8 79 317 34 288 2.42e-58 189
MsG0280010009.01.T01 AT1G43640 35.772 369 131 11 49 317 1 363 2.82e-58 191
MsG0280010009.01.T01 AT5G18680 42.481 266 114 8 81 317 42 297 1.90e-54 180
MsG0280010009.01.T01 AT1G25280 41.328 271 96 9 106 317 1 267 2.52e-52 173
MsG0280010009.01.T01 AT1G25280 41.328 271 96 9 106 317 1 267 2.52e-52 173

Find 71 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCTTGTTCTGTCACTTGA+TGG 0.251724 2:-62799255 None:intergenic
ATCATTCGCCTTGGACGTTT+TGG 0.253223 2:-62799369 None:intergenic
GTTCTTTACAGTGCATCTTA+TGG 0.257272 2:-62799455 None:intergenic
CTTTCCCTCCTGGTTGGCTT+TGG 0.277699 2:-62799623 None:intergenic
ATAATATCCGCAAGAAGTTC+TGG 0.306087 2:-62797590 None:intergenic
GCCATTTGCTTAACTAGCTT+TGG 0.306815 2:+62799741 MsG0280010009.01.T01:CDS
TGTTCTGTCACTTGATGGTT+TGG 0.330137 2:-62799250 None:intergenic
TCTTCATCTCCTTTCCCTCC+TGG 0.342544 2:-62799633 None:intergenic
GATATCTTCTAGCTGCTAAT+AGG 0.354984 2:-62798855 None:intergenic
ATCTTACTGACAAGCCAGTT+TGG 0.393584 2:-62799766 None:intergenic
TCGCCAGCATTAACAGATAC+AGG 0.396379 2:+62798826 MsG0280010009.01.T01:intron
GCTACCGGAACTTTCGCATA+TGG 0.404990 2:-62799418 None:intergenic
AACTAGCTTTGGCACCAAAC+TGG 0.411927 2:+62799752 MsG0280010009.01.T01:CDS
CATCTCCTTTCCCTCCTGGT+TGG 0.445642 2:-62799629 None:intergenic
ACAATTTATGACGCCTCGGC+TGG 0.460766 2:+62799225 MsG0280010009.01.T01:CDS
TCATCCATATGCGAAAGTTC+CGG 0.463929 2:+62799414 MsG0280010009.01.T01:CDS
CTTGTGCCTGCGTTTGTAAA+CGG 0.470970 2:+62797666 MsG0280010009.01.T01:CDS
CTTGAACTTCCACGAGAGAA+AGG 0.475362 2:+62799551 MsG0280010009.01.T01:CDS
ATGCTTATGTTGGCAAGCTT+AGG 0.481521 2:+62798941 MsG0280010009.01.T01:CDS
CAAAGCCAACCAGGAGGGAA+AGG 0.481638 2:+62799624 MsG0280010009.01.T01:CDS
AAAAGCATGGAAGGCAGATA+AGG 0.486299 2:-62799718 None:intergenic
TATTAGCAGCTAGAAGATAT+CGG 0.489255 2:+62798857 MsG0280010009.01.T01:CDS
TTTGTCCTCCGATGCACTAC+CGG 0.499562 2:-62797546 None:intergenic
CCTGCTGGTAACATCGAGGC+AGG 0.504867 2:+62799312 MsG0280010009.01.T01:CDS
GCCAAAGCTAGTTAAGCAAA+TGG 0.506693 2:-62799742 None:intergenic
CAGGGAAGTAATGCTTATGT+TGG 0.516083 2:+62798931 MsG0280010009.01.T01:CDS
AGAGAGCAAATCATTCGCCT+TGG 0.519881 2:-62799378 None:intergenic
AAAGCATGGAAGGCAGATAA+GGG 0.521652 2:-62799717 None:intergenic
TGATGGTTTGGCACCAGCCG+AGG 0.523937 2:-62799238 None:intergenic
CAGATACTTCAACAATGCTC+AGG 0.525873 2:+62797496 MsG0280010009.01.T01:CDS
CTGTCATATCCTTTCTCTCG+TGG 0.526884 2:-62799560 None:intergenic
ATTAAACGAGTTGATGTCAC+CGG 0.529161 2:+62797611 MsG0280010009.01.T01:CDS
CATCGGAGGACAAAACTGAT+TGG 0.540142 2:+62797555 MsG0280010009.01.T01:CDS
ACGATGCGGCCATTGTTCCC+CGG 0.542118 2:-62797630 None:intergenic
CGCAAGAAGTTCTGGAAGCA+TGG 0.545732 2:-62797582 None:intergenic
ATAAGTCCTCAAGTTCCTGC+TGG 0.547760 2:+62799297 MsG0280010009.01.T01:CDS
GGAACGAGCAATTAGAGTGC+TGG 0.557590 2:+62799526 MsG0280010009.01.T01:CDS
CTTCACAATTTATGACGCCT+CGG 0.560452 2:+62799221 MsG0280010009.01.T01:CDS
TTGATGTCACCGGGGAACAA+TGG 0.560459 2:+62797621 MsG0280010009.01.T01:CDS
GGAACTTTCGCATATGGATG+AGG 0.560977 2:-62799412 None:intergenic
CTTTCGCATATGGATGAGGC+AGG 0.563673 2:-62799408 None:intergenic
GCAAATGGCAAAAGCATGGA+AGG 0.572944 2:-62799727 None:intergenic
TTTATTCTTCAAGATTGTGT+AGG 0.575970 2:-62799493 None:intergenic
ATGTTACCAGCAGGAACTTG+AGG 0.580374 2:-62799303 None:intergenic
TTAAGCAAATGGCAAAAGCA+TGG 0.581228 2:-62799731 None:intergenic
TTAAACGAGTTGATGTCACC+GGG 0.582848 2:+62797612 MsG0280010009.01.T01:CDS
CGCCAGCATTAACAGATACA+GGG 0.585383 2:+62798827 MsG0280010009.01.T01:intron
ACTGTGGACCAAAGCCAACC+AGG 0.595427 2:+62799615 MsG0280010009.01.T01:CDS
CCTGCCTCGATGTTACCAGC+AGG 0.597056 2:-62799312 None:intergenic
TCTGTTTGCTTGCAAAACGC+CGG 0.603910 2:-62799275 None:intergenic
CACCACCGGTAGTGCATCGG+AGG 0.607308 2:+62797541 MsG0280010009.01.T01:CDS
TGACACCACCGGTAGTGCAT+CGG 0.608180 2:+62797538 MsG0280010009.01.T01:CDS
TAAGGGCTGTCTATAATACA+TGG 0.610338 2:-62799700 None:intergenic
CATGCTTCCAGAACTTCTTG+CGG 0.624235 2:+62797583 MsG0280010009.01.T01:CDS
GTCCTCCGATGCACTACCGG+TGG 0.634176 2:-62797543 None:intergenic
TGAAGAATAAAGCTCCGATG+TGG 0.636117 2:+62799505 MsG0280010009.01.T01:CDS
GCTCAGGCTCTCAATGCTAC+CGG 0.643110 2:+62797512 MsG0280010009.01.T01:CDS
GCTACCGGCGATGACACCAC+CGG 0.645253 2:+62797527 MsG0280010009.01.T01:CDS
ACTACCGGTGGTGTCATCGC+CGG 0.646189 2:-62797531 None:intergenic
GTTGTCGAAAGACTTGCTAC+CGG 0.647970 2:-62799433 None:intergenic
TCTAATTGCTCGTTCCACAT+CGG 0.654420 2:-62799519 None:intergenic
TGGACCAAAGCCAACCAGGA+GGG 0.658819 2:+62799619 MsG0280010009.01.T01:CDS
CATCAAGTGACAGAACAAGC+CGG 0.663743 2:+62799256 MsG0280010009.01.T01:CDS
TCTCCACCGTTTACAAACGC+AGG 0.669746 2:-62797672 None:intergenic
GTGCCTGCGTTTGTAAACGG+TGG 0.674024 2:+62797669 MsG0280010009.01.T01:CDS
CTGCTGGTAACATCGAGGCA+GGG 0.678173 2:+62799313 MsG0280010009.01.T01:CDS
GCGACGACATTTCGACGATG+CGG 0.691215 2:-62797644 None:intergenic
CGAGAGAAAGGATATGACAG+TGG 0.711765 2:+62799563 MsG0280010009.01.T01:CDS
GTGGACCAAAGCCAACCAGG+AGG 0.734579 2:+62799618 MsG0280010009.01.T01:CDS
AGTTCCTGCTGGTAACATCG+AGG 0.752296 2:+62799308 MsG0280010009.01.T01:CDS
TAAACGAGTTGATGTCACCG+GGG 0.773553 2:+62797613 MsG0280010009.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATTATTTTAATATT+AGG + Chr2:62798469-62798488 MsG0280010009.01.T01:intron 0.0%
!! ATAATGATTAAAATTTCAAA+TGG + Chr2:62798721-62798740 MsG0280010009.01.T01:intron 10.0%
!! TTGAGAATAAATTCAATAAA+TGG - Chr2:62799124-62799143 None:intergenic 15.0%
!! GATGCATTTATTAAGTATAT+AGG + Chr2:62798444-62798463 MsG0280010009.01.T01:intron 20.0%
!! TCAAACTATTAAAGAAGAAA+AGG - Chr2:62798372-62798391 None:intergenic 20.0%
!! TTAAAATTTCAAATGGAGAT+TGG + Chr2:62798728-62798747 MsG0280010009.01.T01:intron 20.0%
!! TTTATGGATCATGAAAAATT+TGG + Chr2:62797812-62797831 MsG0280010009.01.T01:intron 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG - Chr2:62797947-62797966 None:intergenic 20.0%
!! TTTCTCTCTTGAATAATTTA+TGG + Chr2:62797796-62797815 MsG0280010009.01.T01:intron 20.0%
!!! ATCTTGTTATGTTTTGATAA+AGG + Chr2:62798136-62798155 MsG0280010009.01.T01:intron 20.0%
! ACAAACTAACTATTAACATC+TGG + Chr2:62799086-62799105 MsG0280010009.01.T01:intron 25.0%
! ATCAATTGAATTAAGAGAGT+TGG + Chr2:62798104-62798123 MsG0280010009.01.T01:intron 25.0%
! ATTTATTGAAGAAAACGAGT+AGG + Chr2:62799018-62799037 MsG0280010009.01.T01:intron 25.0%
! TTTATTCTTCAAGATTGTGT+AGG - Chr2:62799496-62799515 None:intergenic 25.0%
!! AAATGAATTCATTTTGTTGC+AGG - Chr2:62797772-62797791 None:intergenic 25.0%
!! CTAACATTTTGTTCAATTAG+TGG + Chr2:62797870-62797889 MsG0280010009.01.T01:intron 25.0%
!! TACTCGTTTTCTTCAATAAA+TGG - Chr2:62799019-62799038 None:intergenic 25.0%
CAAAACAGTACTTACTTACA+TGG - Chr2:62798673-62798692 None:intergenic 30.0%
GAAAATGAAACCAAGTTACT+CGG + Chr2:62798248-62798267 MsG0280010009.01.T01:intron 30.0%
TATTAGCAGCTAGAAGATAT+CGG + Chr2:62798857-62798876 MsG0280010009.01.T01:CDS 30.0%
TATTCCAATTTACAACACAG+TGG - Chr2:62798612-62798631 None:intergenic 30.0%
! TGGTTTTTCTTTCATGAATG+AGG - Chr2:62798999-62799018 None:intergenic 30.0%
!! CATGTAAGTAAGTACTGTTT+TGG + Chr2:62798671-62798690 MsG0280010009.01.T01:intron 30.0%
!! GTTTTGGCAAAAGGATTATT+TGG + Chr2:62798687-62798706 MsG0280010009.01.T01:intron 30.0%
!! TACTCCAGTTTTGTAAAGTA+GGG + Chr2:62799664-62799683 MsG0280010009.01.T01:CDS 30.0%
!!! CAAAAGGCTGAATTTTTTGT+AGG - Chr2:62799346-62799365 None:intergenic 30.0%
AAAATCACGAGTTAACTCGT+AGG + Chr2:62798164-62798183 MsG0280010009.01.T01:intron 35.0%
AAGATAGAGGTAAAATGTGG+AGG - Chr2:62798641-62798660 None:intergenic 35.0%
ACTCGTAGGATCATATGTTT+AGG + Chr2:62798178-62798197 MsG0280010009.01.T01:intron 35.0%
ATAATATCCGCAAGAAGTTC+TGG - Chr2:62797593-62797612 None:intergenic 35.0%
CTATCTATGAAGCATGGATA+CGG + Chr2:62797893-62797912 MsG0280010009.01.T01:intron 35.0%
GTTCTTTACAGTGCATCTTA+TGG - Chr2:62799458-62799477 None:intergenic 35.0%
TAAGGGCTGTCTATAATACA+TGG - Chr2:62799703-62799722 None:intergenic 35.0%
TACTTACTTACATGGTGTGA+GGG - Chr2:62798665-62798684 None:intergenic 35.0%
TATTGAAGAAAACGAGTAGG+AGG + Chr2:62799021-62799040 MsG0280010009.01.T01:intron 35.0%
TCTACGAGTTAATTTCACGT+AGG + Chr2:62798506-62798525 MsG0280010009.01.T01:intron 35.0%
TTAAGCAAATGGCAAAAGCA+TGG - Chr2:62799734-62799753 None:intergenic 35.0%
TTAATATTCACCCCTTTGTC+CGG - Chr2:62799062-62799081 None:intergenic 35.0%
TTTCCCTTCTTGTCTTAAAC+AGG + Chr2:62797745-62797764 MsG0280010009.01.T01:intron 35.0%
! ATCAGTGAAGAATTTTCAGC+TGG + Chr2:62799587-62799606 MsG0280010009.01.T01:CDS 35.0%
! CAACAATCTTTTGCTTTGTC+TGG + Chr2:62799141-62799160 MsG0280010009.01.T01:intron 35.0%
! GATATCTTCTAGCTGCTAAT+AGG - Chr2:62798858-62798877 None:intergenic 35.0%
! GTGATTTTTCCGTTAAGAGA+AGG - Chr2:62797725-62797744 None:intergenic 35.0%
!! ACTCCAGTTTTGTAAAGTAG+GGG + Chr2:62799665-62799684 MsG0280010009.01.T01:CDS 35.0%
!! ATTAAACGAGTTGATGTCAC+CGG + Chr2:62797611-62797630 MsG0280010009.01.T01:CDS 35.0%
!! CTACTCCAGTTTTGTAAAGT+AGG + Chr2:62799663-62799682 MsG0280010009.01.T01:CDS 35.0%
!!! GTAAGTACTGTTTTGGCAAA+AGG + Chr2:62798678-62798697 MsG0280010009.01.T01:intron 35.0%
!!! TTGGACGTTTTGGTTTCAAA+AGG - Chr2:62799362-62799381 None:intergenic 35.0%
!!! TTTTGAAACCAAAACGTCCA+AGG + Chr2:62799361-62799380 MsG0280010009.01.T01:CDS 35.0%
AAAGCATGGAAGGCAGATAA+GGG - Chr2:62799720-62799739 None:intergenic 40.0%
ATGAAACCAAGTTACTCGGT+TGG + Chr2:62798252-62798271 MsG0280010009.01.T01:intron 40.0%
ATGCTTATGTTGGCAAGCTT+AGG + Chr2:62798941-62798960 MsG0280010009.01.T01:CDS 40.0%
CAATTTACAACACAGTGGTG+GGG - Chr2:62798607-62798626 None:intergenic 40.0%
CAGATACTTCAACAATGCTC+AGG + Chr2:62797496-62797515 MsG0280010009.01.T01:CDS 40.0%
CAGGGAAGTAATGCTTATGT+TGG + Chr2:62798931-62798950 MsG0280010009.01.T01:CDS 40.0%
CCAATTTACAACACAGTGGT+GGG - Chr2:62798608-62798627 None:intergenic 40.0%
CTTCACAATTTATGACGCCT+CGG + Chr2:62799221-62799240 MsG0280010009.01.T01:CDS 40.0%
GCCAAAGCTAGTTAAGCAAA+TGG - Chr2:62799745-62799764 None:intergenic 40.0%
GGCAAGATAGAGGTAAAATG+TGG - Chr2:62798644-62798663 None:intergenic 40.0%
GTACTTACTTACATGGTGTG+AGG - Chr2:62798666-62798685 None:intergenic 40.0%
TAATATTCACCCCTTTGTCC+GGG - Chr2:62799061-62799080 None:intergenic 40.0%
TAGTGGCTATCTATGAAGCA+TGG + Chr2:62797887-62797906 MsG0280010009.01.T01:intron 40.0%
TATGAAGCACAAACACACCT+CGG - Chr2:62798055-62798074 None:intergenic 40.0%
TCATCCATATGCGAAAGTTC+CGG + Chr2:62799414-62799433 MsG0280010009.01.T01:CDS 40.0%
TCCAATTTACAACACAGTGG+TGG - Chr2:62798609-62798628 None:intergenic 40.0%
TCTAATTGCTCGTTCCACAT+CGG - Chr2:62799522-62799541 None:intergenic 40.0%
TGAAGAATAAAGCTCCGATG+TGG + Chr2:62799505-62799524 MsG0280010009.01.T01:CDS 40.0%
TGAGTTTAAACCCGGACAAA+GGG + Chr2:62799048-62799067 MsG0280010009.01.T01:intron 40.0%
TTCCCTGTATCTGTTAATGC+TGG - Chr2:62798832-62798851 None:intergenic 40.0%
TTGAGTTTAAACCCGGACAA+AGG + Chr2:62799047-62799066 MsG0280010009.01.T01:intron 40.0%
TTTGTCCGGGTTTAAACTCA+AGG - Chr2:62799048-62799067 None:intergenic 40.0%
! AAAAGCATGGAAGGCAGATA+AGG - Chr2:62799721-62799740 None:intergenic 40.0%
! AGGACCTGTTTAAGACAAGA+AGG - Chr2:62797752-62797771 None:intergenic 40.0%
! GATGCTGATGACTTTTCACA+GGG + Chr2:62798913-62798932 MsG0280010009.01.T01:CDS 40.0%
! GCCATTTGCTTAACTAGCTT+TGG + Chr2:62799741-62799760 MsG0280010009.01.T01:CDS 40.0%
! GGACCTGTTTAAGACAAGAA+GGG - Chr2:62797751-62797770 None:intergenic 40.0%
! TGTTCTGTCACTTGATGGTT+TGG - Chr2:62799253-62799272 None:intergenic 40.0%
!! CTCCAGTTTTGTAAAGTAGG+GGG + Chr2:62799666-62799685 MsG0280010009.01.T01:CDS 40.0%
!! TTAAACGAGTTGATGTCACC+GGG + Chr2:62797612-62797631 MsG0280010009.01.T01:CDS 40.0%
!!! ACTCTCGATTTTGACTACCT+TGG + Chr2:62798547-62798566 MsG0280010009.01.T01:intron 40.0%
AGAGAGCAAATCATTCGCCT+TGG - Chr2:62799381-62799400 None:intergenic 45.0%
ATAAGTCCTCAAGTTCCTGC+TGG + Chr2:62799297-62799316 MsG0280010009.01.T01:CDS 45.0%
ATATCACACGTGAGGTCGTA+GGG + Chr2:62797696-62797715 MsG0280010009.01.T01:intron 45.0%
ATGAAGCACAAACACACCTC+GGG - Chr2:62798054-62798073 None:intergenic 45.0%
ATGAAGCATGGATACGGACA+CGG + Chr2:62797899-62797918 MsG0280010009.01.T01:intron 45.0%
ATGAGTCCAACCGAGTAACT+TGG - Chr2:62798261-62798280 None:intergenic 45.0%
ATGTTACCAGCAGGAACTTG+AGG - Chr2:62799306-62799325 None:intergenic 45.0%
CACCCCCTACTTTACAAAAC+TGG - Chr2:62799671-62799690 None:intergenic 45.0%
CATCAAGTGACAGAACAAGC+CGG + Chr2:62799256-62799275 MsG0280010009.01.T01:CDS 45.0%
CATCGGAGGACAAAACTGAT+TGG + Chr2:62797555-62797574 MsG0280010009.01.T01:CDS 45.0%
CATGCTTCCAGAACTTCTTG+CGG + Chr2:62797583-62797602 MsG0280010009.01.T01:CDS 45.0%
CCCACCACTGTGTTGTAAAT+TGG + Chr2:62798605-62798624 MsG0280010009.01.T01:intron 45.0%
CGAGAGAAAGGATATGACAG+TGG + Chr2:62799563-62799582 MsG0280010009.01.T01:CDS 45.0%
CGCCAGCATTAACAGATACA+GGG + Chr2:62798827-62798846 MsG0280010009.01.T01:intron 45.0%
CTGTCATATCCTTTCTCTCG+TGG - Chr2:62799563-62799582 None:intergenic 45.0%
CTTGAACTTCCACGAGAGAA+AGG + Chr2:62799551-62799570 MsG0280010009.01.T01:CDS 45.0%
CTTGTGCCTGCGTTTGTAAA+CGG + Chr2:62797666-62797685 MsG0280010009.01.T01:CDS 45.0%
GAGGACCTTGAGTTTAAACC+CGG + Chr2:62799040-62799059 MsG0280010009.01.T01:intron 45.0%
GAGGTGTGTTTGTGCTTCAT+AGG + Chr2:62798054-62798073 MsG0280010009.01.T01:intron 45.0%
GAGTTTAAACCCGGACAAAG+GGG + Chr2:62799049-62799068 MsG0280010009.01.T01:intron 45.0%
GCTGGAAGTCATCAAAACCA+AGG - Chr2:62798567-62798586 None:intergenic 45.0%
GGAACTTTCGCATATGGATG+AGG - Chr2:62799415-62799434 None:intergenic 45.0%
GTGTGTTTGTGCTTCATAGG+TGG + Chr2:62798057-62798076 MsG0280010009.01.T01:intron 45.0%
TACAAGTGTCAGTGTCGTGT+CGG + Chr2:62797988-62798007 MsG0280010009.01.T01:intron 45.0%
TCGCCAGCATTAACAGATAC+AGG + Chr2:62798826-62798845 MsG0280010009.01.T01:intron 45.0%
TCTGTTTGCTTGCAAAACGC+CGG - Chr2:62799278-62799297 None:intergenic 45.0%
! ATCATTCGCCTTGGACGTTT+TGG - Chr2:62799372-62799391 None:intergenic 45.0%
! CGATGCTGATGACTTTTCAC+AGG + Chr2:62798912-62798931 MsG0280010009.01.T01:CDS 45.0%
! GCAAATGGCAAAAGCATGGA+AGG - Chr2:62799730-62799749 None:intergenic 45.0%
! TTTTCAGCTGGTTGCTACTG+TGG + Chr2:62799599-62799618 MsG0280010009.01.T01:CDS 45.0%
!! AACTAGCTTTGGCACCAAAC+TGG + Chr2:62799752-62799771 MsG0280010009.01.T01:CDS 45.0%
!! GTTGTCGAAAGACTTGCTAC+CGG - Chr2:62799436-62799455 None:intergenic 45.0%
!! GTTTTGATGACTTCCAGCCA+GGG + Chr2:62798569-62798588 MsG0280010009.01.T01:intron 45.0%
!! TAAACGAGTTGATGTCACCG+GGG + Chr2:62797613-62797632 MsG0280010009.01.T01:CDS 45.0%
ACAATTTATGACGCCTCGGC+TGG + Chr2:62799225-62799244 MsG0280010009.01.T01:CDS 50.0%
AGTTCCTGCTGGTAACATCG+AGG + Chr2:62799308-62799327 MsG0280010009.01.T01:CDS 50.0%
ATGGTGTGAGGGCAAGATAG+AGG - Chr2:62798654-62798673 None:intergenic 50.0%
CTTTCGCATATGGATGAGGC+AGG - Chr2:62799411-62799430 None:intergenic 50.0%
GATATCACACGTGAGGTCGT+AGG + Chr2:62797695-62797714 MsG0280010009.01.T01:intron 50.0%
GCTACCGGAACTTTCGCATA+TGG - Chr2:62799421-62799440 None:intergenic 50.0%
GGAACGAGCAATTAGAGTGC+TGG + Chr2:62799526-62799545 MsG0280010009.01.T01:CDS 50.0%
GTAGGGTCGCCTTCTCTTAA+CGG + Chr2:62797713-62797732 MsG0280010009.01.T01:intron 50.0%
GTGGAGAGATATCACACGTG+AGG + Chr2:62797688-62797707 MsG0280010009.01.T01:intron 50.0%
TCTCCACCGTTTACAAACGC+AGG - Chr2:62797675-62797694 None:intergenic 50.0%
TCTTCATCTCCTTTCCCTCC+TGG - Chr2:62799636-62799655 None:intergenic 50.0%
TTGATGTCACCGGGGAACAA+TGG + Chr2:62797621-62797640 MsG0280010009.01.T01:CDS 50.0%
TTTGTCCTCCGATGCACTAC+CGG - Chr2:62797549-62797568 None:intergenic 50.0%
! CGGCTTGTTCTGTCACTTGA+TGG - Chr2:62799258-62799277 None:intergenic 50.0%
! TTACAACACAGTGGTGGGGA+AGG - Chr2:62798603-62798622 None:intergenic 50.0%
!! CGCAAGAAGTTCTGGAAGCA+TGG - Chr2:62797585-62797604 None:intergenic 50.0%
!! GGTTTTGATGACTTCCAGCC+AGG + Chr2:62798568-62798587 MsG0280010009.01.T01:intron 50.0%
ACTGTGGACCAAAGCCAACC+AGG + Chr2:62799615-62799634 MsG0280010009.01.T01:CDS 55.0%
ATACGGACACGGACACGACA+CGG + Chr2:62797910-62797929 MsG0280010009.01.T01:intron 55.0%
CAAAGCCAACCAGGAGGGAA+AGG + Chr2:62799624-62799643 MsG0280010009.01.T01:CDS 55.0%
CATCTCCTTTCCCTCCTGGT+TGG - Chr2:62799632-62799651 None:intergenic 55.0%
CTGCTGGTAACATCGAGGCA+GGG + Chr2:62799313-62799332 MsG0280010009.01.T01:CDS 55.0%
GCGACGACATTTCGACGATG+CGG - Chr2:62797647-62797666 None:intergenic 55.0%
GCTCAGGCTCTCAATGCTAC+CGG + Chr2:62797512-62797531 MsG0280010009.01.T01:CDS 55.0%
GTGCCTGCGTTTGTAAACGG+TGG + Chr2:62797669-62797688 MsG0280010009.01.T01:CDS 55.0%
TGACACCACCGGTAGTGCAT+CGG + Chr2:62797538-62797557 MsG0280010009.01.T01:CDS 55.0%
TGGACCAAAGCCAACCAGGA+GGG + Chr2:62799619-62799638 MsG0280010009.01.T01:CDS 55.0%
! GGTTAGACGTGTCGCTGTGT+CGG - Chr2:62798033-62798052 None:intergenic 55.0%
! TGTCAGTGTCGTGTCGGTGT+CGG + Chr2:62797994-62798013 MsG0280010009.01.T01:intron 55.0%
!! CTTTCCCTCCTGGTTGGCTT+TGG - Chr2:62799626-62799645 None:intergenic 55.0%
ACAGCGACACGTCTAACCCG+AGG + Chr2:62798035-62798054 MsG0280010009.01.T01:intron 60.0%
ACGATGCGGCCATTGTTCCC+CGG - Chr2:62797633-62797652 None:intergenic 60.0%
CCTGCCTCGATGTTACCAGC+AGG - Chr2:62799315-62799334 None:intergenic 60.0%
CCTGCTGGTAACATCGAGGC+AGG + Chr2:62799312-62799331 MsG0280010009.01.T01:CDS 60.0%
GTGGACCAAAGCCAACCAGG+AGG + Chr2:62799618-62799637 MsG0280010009.01.T01:CDS 60.0%
! TGATGGTTTGGCACCAGCCG+AGG - Chr2:62799241-62799260 None:intergenic 60.0%
!! ACTACCGGTGGTGTCATCGC+CGG - Chr2:62797534-62797553 None:intergenic 60.0%
CACCACCGGTAGTGCATCGG+AGG + Chr2:62797541-62797560 MsG0280010009.01.T01:CDS 65.0%
GCTACCGGCGATGACACCAC+CGG + Chr2:62797527-62797546 MsG0280010009.01.T01:CDS 65.0%
GTCCTCCGATGCACTACCGG+TGG - Chr2:62797546-62797565 None:intergenic 65.0%
! CAGTGGTGGGGAAGGTCGCG+TGG - Chr2:62798595-62798614 None:intergenic 70.0%
GAAGGTCGCGTGGCCCTGGC+TGG - Chr2:62798585-62798604 None:intergenic 75.0%
TGGGGAAGGTCGCGTGGCCC+TGG - Chr2:62798589-62798608 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 62797467 62799785 62797467 ID=MsG0280010009.01;Name=MsG0280010009.01
Chr2 mRNA 62797467 62799785 62797467 ID=MsG0280010009.01.T01;Parent=MsG0280010009.01;Name=MsG0280010009.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|317
Chr2 exon 62797467 62797704 62797467 ID=MsG0280010009.01.T01:exon:34757;Parent=MsG0280010009.01.T01
Chr2 exon 62798833 62798962 62798833 ID=MsG0280010009.01.T01:exon:34758;Parent=MsG0280010009.01.T01
Chr2 exon 62799200 62799785 62799200 ID=MsG0280010009.01.T01:exon:34759;Parent=MsG0280010009.01.T01
Chr2 CDS 62797467 62797704 62797467 ID=MsG0280010009.01.T01:cds;Parent=MsG0280010009.01.T01
Chr2 CDS 62798833 62798962 62798833 ID=MsG0280010009.01.T01:cds;Parent=MsG0280010009.01.T01
Chr2 CDS 62799200 62799785 62799200 ID=MsG0280010009.01.T01:cds;Parent=MsG0280010009.01.T01
Gene Sequence

>MsG0280010009.01.T01

ATGAAGCTCTTTCGATCTCTTAAATTCTTCAGATACTTCAACAATGCTCAGGCTCTCAATGCTACCGGCGATGACACCACCGGTAGTGCATCGGAGGACAAAACTGATTGGTCTACCATGCTTCCAGAACTTCTTGCGGATATTATTAAACGAGTTGATGTCACCGGGGAACAATGGCCGCATCGTCGAAATGTCGTCGCTTGTGCCTGCGTTTGTAAACGGTGGAGAGATATCACACCATTAACAGATACAGGGAAATTCCTATTAGCAGCTAGAAGATATCGGTGTGTTACGCATACTGAGTATGTTATATCGCTCGATGCTGATGACTTTTCACAGGGAAGTAATGCTTATGTTGGCAAGCTTAGTTCAGATTTTCTTGAAGCAAGCTTCACAATTTATGACGCCTCGGCTGGTGCCAAACCATCAAGTGACAGAACAAGCCGGCGTTTTGCAAGCAAACAGATAAGTCCTCAAGTTCCTGCTGGTAACATCGAGGCAGGGAACATCTCCTACAAAAAATTCAGCCTTTTGAAACCAAAACGTCCAAGGCGAATGATTTGCTCTCTGAAGTCTCCTGCCTCATCCATATGCGAAAGTTCCGGTAGCAAGTCTTTCGACAACCATAAGATGCACTGTAAAGAACAAGCTACTTCTTCTGCCTACACAATCTTGAAGAATAAAGCTCCGATGTGGAACGAGCAATTAGAGTGCTGGTTCTTGAACTTCCACGAGAGAAAGGATATGACAGTGGCATCAGTGAAGAATTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACAGTTCTACTCCAGTTTTGTAAAGTAGGGGGTGATACTTTCACCATGTATTATAGACAGCCCTTATCTGCCTTCCATGCTTTTGCCATTTGCTTAACTAGCTTTGGCACCAAACTGGCTTGTCAGTAA
Protein sequence

>MsG0280010009.01.T01

MKLFRSLKFFRYFNNAQALNATGDDTTGSASEDKTDWSTMLPELLADIIKRVDVTGEQWPHRRNVVACACVCKRWRDITPLTDTGKFLLAARRYRCVTHTEYVISLDADDFSQGSNAYVGKLSSDFLEASFTIYDASAGAKPSSDRTSRRFASKQISPQVPAGNIEAGNISYKKFSLLKPKRPRRMICSLKSPASSICESSGSKSFDNHKMHCKEQATSSAYTILKNKAPMWNEQLECWFLNFHERKDMTVASVKNFQLVATVDQSQPGGKGDEETVLLQFCKVGGDTFTMYYRQPLSAFHAFAICLTSFGTKLACQ*