AlfalfaGEDB | MsG0280010452.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010452.01

KEGG: -
GO: -
PFAM: PF04640

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010452.01.T01	RHN75377.1	91.102	236	15	1	1	236	3	232	1.49E-142	408
MsG0280010452.01.T02	RHN75377.1	74.02	204	10	2	1	167	35	232	8.80E-84	256
MsG0280010452.01.T03	RHN75377.1	89.326	178	13	1	4	181	61	232	1.48E-96	289
MsG0280010452.01.T04	KEH38903.1	92.053	151	12	0	1	151	1	151	4.22E-97	290
MsG0280010452.01.T05	RHN75377.1	91.597	119	10	0	1	119	35	153	1.06E-72	226

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010452.01.T01	Q1G3Q4	38.571	140	75	5	6	145	8	136	2.68E-20	89.7
MsG0280010452.01.T04	Q1G3Q4	36.842	152	82	5	6	157	8	145	3.48E-21	89.4
MsG0280010452.01.T05	Q1G3Q4	34.959	123	67	4	3	125	36	145	3.22E-13	67

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010452.01.T01	A0A396JJY5	91.102	236	15	1	1	236	3	232	7.11e-143	408
MsG0280010452.01.T02	A0A396JJY5	74.020	204	10	2	1	167	35	232	4.20e-84	256
MsG0280010452.01.T03	A0A072VBY3	89.326	178	13	1	4	181	59	230	1.02e-96	289
MsG0280010452.01.T03	A0A396JJY5	89.326	178	13	1	4	181	61	232	7.06e-97	289
MsG0280010452.01.T04	A0A072VBY3	92.053	151	12	0	1	151	1	151	2.01e-97	290
MsG0280010452.01.T05	A0A396JJY5	91.597	119	10	0	1	119	35	153	5.08e-73	226

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TFs/TRs:

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Gene ID	Type	Classification
MsG0280010452.01.T01	TF	PLATZ
MsG0280010452.01.T05	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010452.01.T01	MTR_2g084495	91.102	236	15	1	1	236	1	230	2.49e-146	407
MsG0280010452.01.T01	MTR_2g084510	57.377	244	93	4	2	236	1	242	6.13e-91	268
MsG0280010452.01.T01	MTR_2g084525	60.000	245	87	3	1	236	1	243	1.19e-87	259
MsG0280010452.01.T01	MTR_2g060500	71.223	139	40	0	1	139	7	145	4.07e-68	206
MsG0280010452.01.T01	MTR_2g060540	70.504	139	41	0	1	139	7	145	1.43e-67	205
MsG0280010452.01.T01	MTR_1g062160	38.934	244	93	8	2	235	4	201	2.15e-45	150
MsG0280010452.01.T01	MTR_7g102790	39.583	240	99	10	1	235	4	202	2.76e-41	140
MsG0280010452.01.T01	MTR_5g030130	44.099	161	75	4	3	158	34	184	9.18e-41	140
MsG0280010452.01.T01	MTR_5g030130	48.148	135	60	3	5	139	36	160	1.85e-39	135
MsG0280010452.01.T01	MTR_5g007230	43.671	158	79	3	3	160	20	167	9.76e-39	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010452.01.T01	AT1G43000	36.402	239	120	7	1	235	13	223	9.77e-44	147
MsG0280010452.01.T01	AT1G43000	36.402	239	120	7	1	235	6	216	1.06e-43	147
MsG0280010452.01.T01	AT1G21000	35.270	241	135	8	5	235	17	246	3.79e-40	138
MsG0280010452.01.T01	AT1G21000	35.270	241	135	8	5	235	14	243	4.07e-40	138
MsG0280010452.01.T01	AT4G17900	47.973	148	64	5	3	149	33	168	1.31e-38	134
MsG0280010452.01.T01	AT1G76590	35.146	239	135	7	5	235	19	245	1.95e-38	134
MsG0280010452.01.T01	AT4G17900	47.973	148	64	5	3	149	19	154	3.33e-38	132
MsG0280010452.01.T01	AT1G32700	47.183	142	65	3	6	147	14	145	8.31e-38	131
MsG0280010452.01.T01	AT2G27930	46.043	139	69	3	6	141	6	141	9.14e-35	123
MsG0280010452.01.T01	AT2G27930	46.043	139	69	3	6	141	6	141	9.14e-35	123

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Find 28 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAAATTCAAGAAGAA+AGG	0.446839	2:-69839790	MsG0280010452.01.T01:CDS
AAATCGAAAAGTAAATGAAG+CGG	0.626418	2:-69839904	MsG0280010452.01.T01:CDS
AAGAAAGGGAATACCTCGTA+GGG	0.545800	2:-69839775	MsG0280010452.01.T01:CDS
AAGAAGACGATAGGTATAAT+TGG	0.364201	2:-69840427	MsG0280010452.01.T01:CDS
AAGCCAAATTCAAGAAGAAA+GGG	0.497702	2:-69839789	MsG0280010452.01.T01:CDS
AAGGTCCTACAAGATTCCTT+TGG	0.477640	2:+69840374	None:intergenic
AATCGAAAAGTAAATGAAGC+GGG	0.558672	2:-69839903	MsG0280010452.01.T01:CDS
AATCGAAATTTACAAACATT+TGG	0.317490	2:-69840530	MsG0280010452.01.T01:CDS
AGAAATGGAAAGATTGTTGG+AGG	0.534953	2:-69839979	MsG0280010452.01.T01:CDS
AGAAGAAATGGAAAGATTGT+TGG	0.417250	2:-69839982	MsG0280010452.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCCAAATTCAAGAAGAA+AGG	-	Chr2:69840886-69840905	MsG0280010452.01.T01:CDS	30.0%
AAGAAGACGATAGGTATAAT+TGG	-	Chr2:69840249-69840268	MsG0280010452.01.T01:intron	30.0%
AAGCCAAATTCAAGAAGAAA+GGG	-	Chr2:69840887-69840906	MsG0280010452.01.T01:CDS	30.0%
AATCGAAAAGTAAATGAAGC+GGG	-	Chr2:69840773-69840792	MsG0280010452.01.T01:CDS	30.0%
ACGAAGAGAATGAAGAAAAA+AGG	-	Chr2:69840813-69840832	MsG0280010452.01.T01:CDS	30.0%
AGAAGAAATGGAAAGATTGT+TGG	-	Chr2:69840694-69840713	MsG0280010452.01.T01:intron	30.0%
ATCTTTGTAAGATATGCCAA+AGG	-	Chr2:69840286-69840305	MsG0280010452.01.T01:intron	30.0%
ATTCCCTTTCTTCTTGAATT+TGG	+	Chr2:69840893-69840912	None:intergenic	30.0%
CAAGTTTGAATGCATAAAGA+AGG	-	Chr2:69840640-69840659	MsG0280010452.01.T01:intron	30.0%
CAGTTGTATTCATAAACAAG+AGG	-	Chr2:69840208-69840227	MsG0280010452.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	69839761	69840937	69839761	ID=MsG0280010452.01;Name=MsG0280010452.01
Chr2	mRNA	69839761	69840937	69839761	ID=MsG0280010452.01.T01;Parent=MsG0280010452.01;Name=MsG0280010452.01.T01;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|0\|0\|3\|0\|236
Chr2	exon	69840348	69840587	69840348	ID=MsG0280010452.01.T01:exon:9901;Parent=MsG0280010452.01.T01
Chr2	CDS	69840761	69840937	69840761	ID=MsG0280010452.01.T01:cds;Parent=MsG0280010452.01.T01
Chr2	CDS	69840348	69840587	69840348	ID=MsG0280010452.01.T01:cds;Parent=MsG0280010452.01.T01
Chr2	CDS	69839761	69840054	69839761	ID=MsG0280010452.01.T01:cds;Parent=MsG0280010452.01.T01
Chr2	mRNA	69839761	69840841	69839761	ID=MsG0280010452.01.T02;Parent=MsG0280010452.01;Name=MsG0280010452.01.T02;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|0\|0\|3\|0\|167
Chr2	exon	69839761	69840017	69839761	ID=MsG0280010452.01.T02:exon:9905;Parent=MsG0280010452.01.T02
Chr2	exon	69840422	69840587	69840422	ID=MsG0280010452.01.T02:exon:9904;Parent=MsG0280010452.01.T02
Chr2	CDS	69840761	69840841	69840761	ID=MsG0280010452.01.T02:cds;Parent=MsG0280010452.01.T02
Chr2	CDS	69840422	69840587	69840422	ID=MsG0280010452.01.T02:cds;Parent=MsG0280010452.01.T02
Chr2	CDS	69839761	69840017	69839761	ID=MsG0280010452.01.T02:cds;Parent=MsG0280010452.01.T02
Chr2	mRNA	69839761	69840599	69839761	ID=MsG0280010452.01.T03;Parent=MsG0280010452.01;Name=MsG0280010452.01.T03;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|1\|0\|0\|2\|0\|181
Chr2	exon	69840348	69840599	69840348	ID=MsG0280010452.01.T03:exon:9906;Parent=MsG0280010452.01.T03
Chr2	CDS	69840348	69840599	69840348	ID=MsG0280010452.01.T03:cds;Parent=MsG0280010452.01.T03
Chr2	CDS	69839761	69840054	69839761	ID=MsG0280010452.01.T03:cds;Parent=MsG0280010452.01.T03
Chr2	mRNA	69840291	69840937	69840291	ID=MsG0280010452.01.T04;Parent=MsG0280010452.01;Name=MsG0280010452.01.T04;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|1\|0\|0\|2\|0\|157
Chr2	CDS	69840761	69840937	69840761	ID=MsG0280010452.01.T04:cds;Parent=MsG0280010452.01.T04
Chr2	CDS	69840291	69840587	69840291	ID=MsG0280010452.01.T04:cds;Parent=MsG0280010452.01.T04
Chr2	mRNA	69840291	69840841	69840291	ID=MsG0280010452.01.T05;Parent=MsG0280010452.01;Name=MsG0280010452.01.T05;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|0\|0\|2\|0\|125
Chr2	CDS	69840761	69840841	69840761	ID=MsG0280010452.01.T05:cds;Parent=MsG0280010452.01.T05
Chr2	CDS	69840291	69840587	69840291	ID=MsG0280010452.01.T05:cds;Parent=MsG0280010452.01.T05

Gene Sequence

>MsG0280010452.01.T04

>MsG0280010452.01.T03

ATTACAAATCAGGTGAGGAGATCATCTTATACAAACGTCATTAAGACAATCGAAATTTACAAACATTTGGATATTCTAGGAATCCAAACCTATGTGATTAGCAACTTTACAGTTGTATTCATAAACAAGAGGCCTTATTCCCAACCTACGAAGAAGACGATAGGTATAATTGGTTGCAGTAGCGACTATCTTTGTAAGATATGCCAAAGGAATCTTGTAGGACCTTATTACTTTTGCTCTCTGGCATGCAAGTTTGAATGCATAAAGAAGGATAGGGGCTTTTTCCTAAGTGCAAAGGAGACAGAAGAAATGGAAAGATTGTTGGAGGAATCAATCAAGGCACCAAAACAAAAAGCCAAAAAATCGCGTGAACAAAATCTAAATCGAAAAGTAAATGAAGCGGGAATCAACAATGAAGAAAACGAAGAGAATGAAGAAAAAAGGGAGGAAGAAGAAAATGAACAAGAAAAAAGAGAAAACATGCTTCCTATCAAAAAGCCAAATTCAAGAAGAAAGGGAATACCTCGTAGGGCAACCTTTTTTTAA

>MsG0280010452.01.T02

ATGTTCTGTCTCGAATGCAATGACAATCCATTTTGTGGATCTTGCATAAAATCTCATCACAAAGATCATCGAGTAATCCAAGTGAGGAGATCATCTTATACAAACGTCATTAAGACAATCGAAATTTACAAACATTTGGATATTCTAGGAATCCAAACCTATGTGATTAGCAACTTTACAGTTGTATTCATAAACAAGAGGCCTTATTCCCAACCTACGAAGAAGACGATAGGTATAATTGGTTGCAGTGCAAAGGAGACAGAAGAAATGGAAAGATTGTTGGAGGAATCAATCAAGGCACCAAAACAAAAAGCCAAAAAATCGCGTGAACAAAATCTAAATCGAAAAGTAAATGAAGCGGGAATCAACAATGAAGAAAACGAAGAGAATGAAGAAAAAAGGGAGGAAGAAGAAAATGAACAAGAAAAAAGAGAAAACATGCTTCCTATCAAAAAGCCAAATTCAAGAAGAAAGGGAATACCTCGTAGGGCAACCTTTTTTTAA

>MsG0280010452.01.T01

ATGATGTTCGTGCCCTGGCTCAAAAATTTGCTTGCAATCACGGCCTTCTTCACATCATGTGAAGTTCATCTGAATGAGTCAAAAAATGAACGCAACATGTTCTGTCTCGAATGCAATGACAATCCATTTTGTGGATCTTGCATAAAATCTCATCACAAAGATCATCGAGTAATCCAAGTGAGGAGATCATCTTATACAAACGTCATTAAGACAATCGAAATTTACAAACATTTGGATATTCTAGGAATCCAAACCTATGTGATTAGCAACTTTACAGTTGTATTCATAAACAAGAGGCCTTATTCCCAACCTACGAAGAAGACGATAGGTATAATTGGTTGCAGTAGCGACTATCTTTGTAAGATATGCCAAAGGAATCTTGTAGGACCTTATTACTTTTGCTCTCTGGCATGCAAGTTTGAATGCATAAAGAAGGATAGGGGCTTTTTCCTAAGTGCAAAGGAGACAGAAGAAATGGAAAGATTGTTGGAGGAATCAATCAAGGCACCAAAACAAAAAGCCAAAAAATCGCGTGAACAAAATCTAAATCGAAAAGTAAATGAAGCGGGAATCAACAATGAAGAAAACGAAGAGAATGAAGAAAAAAGGGAGGAAGAAGAAAATGAACAAGAAAAAAGAGAAAACATGCTTCCTATCAAAAAGCCAAATTCAAGAAGAAAGGGAATACCTCGTAGGGCAACCTTTTTTTAA

>MsG0280010452.01.T05

ATGTTCTGTCTCGAATGCAATGACAATCCATTTTGTGGATCTTGCATAAAATCTCATCACAAAGATCATCGAGTAATCCAAGTGAGGAGATCATCTTATACAAACGTCATTAAGACAATCGAAATTTACAAACATTTGGATATTCTAGGAATCCAAACCTATGTGATTAGCAACTTTACAGTTGTATTCATAAACAAGAGGCCTTATTCCCAACCTACGAAGAAGACGATAGGTATAATTGGTTGCAGTAGCGACTATCTTTGTAAGATATGCCAAAGGAATCTTGTAGGACCTTATTACTTTTGCTCTCTGGCATGCAAGGTAAATTGTTTTCTCGATCTCATTTTCTTTTTCCTTATCATGTCTCCTTTTTTATAG

Protein sequence

>MsG0280010452.01.T04

MMFVPWLKNLLAITAFFTSCEVHLNESKNERNMFCLECNDNPFCGSCIKSHHKDHRVIQVRRSSYTNVIKTIEIYKHLDILGIQTYVISNFTVVFINKRPYSQPTKKTIGIIGCSSDYLCKICQRNLVGPYYFCSLACKVNCFLDLIFFFLIMSPFL*

>MsG0280010452.01.T03

ITNQVRRSSYTNVIKTIEIYKHLDILGIQTYVISNFTVVFINKRPYSQPTKKTIGIIGCSSDYLCKICQRNLVGPYYFCSLACKFECIKKDRGFFLSAKETEEMERLLEESIKAPKQKAKKSREQNLNRKVNEAGINNEENEENEEKREEEENEQEKRENMLPIKKPNSRRKGIPRRATFF*

>MsG0280010452.01.T02

MFCLECNDNPFCGSCIKSHHKDHRVIQVRRSSYTNVIKTIEIYKHLDILGIQTYVISNFTVVFINKRPYSQPTKKTIGIIGCSAKETEEMERLLEESIKAPKQKAKKSREQNLNRKVNEAGINNEENEENEEKREEEENEQEKRENMLPIKKPNSRRKGIPRRATFF*

>MsG0280010452.01.T01

MMFVPWLKNLLAITAFFTSCEVHLNESKNERNMFCLECNDNPFCGSCIKSHHKDHRVIQVRRSSYTNVIKTIEIYKHLDILGIQTYVISNFTVVFINKRPYSQPTKKTIGIIGCSSDYLCKICQRNLVGPYYFCSLACKFECIKKDRGFFLSAKETEEMERLLEESIKAPKQKAKKSREQNLNRKVNEAGINNEENEENEEKREEEENEQEKRENMLPIKKPNSRRKGIPRRATFF*

>MsG0280010452.01.T05

MFCLECNDNPFCGSCIKSHHKDHRVIQVRRSSYTNVIKTIEIYKHLDILGIQTYVISNFTVVFINKRPYSQPTKKTIGIIGCSSDYLCKICQRNLVGPYYFCSLACKVNCFLDLIFFFLIMSPFL*