Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011082.01.T01 | KEH39469.1 | 98.387 | 124 | 2 | 0 | 41 | 164 | 324 | 447 | 2.44E-82 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011082.01.T01 | Q66GR3 | 47.17 | 159 | 48 | 2 | 5 | 162 | 234 | 357 | 3.06E-35 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011082.01.T01 | A0A072VBS6 | 98.387 | 124 | 2 | 0 | 41 | 164 | 324 | 447 | 1.17e-82 | 260 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280011082.01.T01 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011082.01.T01 | MTR_2g098310 | 98.387 | 124 | 2 | 0 | 41 | 164 | 324 | 447 | 2.96e-86 | 260 |
| MsG0280011082.01.T01 | MTR_2g098310 | 71.774 | 124 | 0 | 1 | 41 | 164 | 324 | 412 | 3.18e-53 | 174 |
| MsG0280011082.01.T01 | MTR_4g065870 | 62.295 | 122 | 11 | 1 | 41 | 162 | 347 | 433 | 8.90e-42 | 144 |
| MsG0280011082.01.T01 | MTR_2g098310 | 66.667 | 105 | 0 | 1 | 41 | 145 | 324 | 393 | 3.86e-37 | 132 |
| MsG0280011082.01.T01 | MTR_1g052470 | 53.488 | 129 | 25 | 1 | 28 | 156 | 277 | 370 | 1.12e-35 | 127 |
| MsG0280011082.01.T01 | MTR_4g065870 | 60.952 | 105 | 6 | 1 | 41 | 145 | 347 | 416 | 2.37e-32 | 119 |
| MsG0280011082.01.T01 | MTR_7g092540 | 49.167 | 120 | 26 | 1 | 41 | 160 | 235 | 319 | 1.48e-29 | 110 |
| MsG0280011082.01.T01 | MTR_3g028520 | 49.167 | 120 | 26 | 1 | 44 | 163 | 317 | 401 | 1.47e-28 | 109 |
| MsG0280011082.01.T01 | MTR_3g027650 | 49.167 | 120 | 26 | 1 | 44 | 163 | 317 | 401 | 1.47e-28 | 109 |
| MsG0280011082.01.T01 | MTR_4g033295 | 50.000 | 116 | 23 | 1 | 41 | 156 | 110 | 190 | 2.78e-28 | 103 |
| MsG0280011082.01.T01 | MTR_1g116790 | 50.847 | 118 | 23 | 1 | 43 | 160 | 259 | 341 | 1.02e-27 | 105 |
| MsG0280011082.01.T01 | MTR_2g098310 | 97.917 | 48 | 1 | 0 | 41 | 88 | 324 | 371 | 7.92e-27 | 104 |
| MsG0280011082.01.T01 | MTR_7g092540 | 51.402 | 107 | 17 | 1 | 41 | 147 | 235 | 306 | 1.66e-26 | 102 |
| MsG0280011082.01.T01 | MTR_4g065870 | 88.889 | 54 | 6 | 0 | 41 | 94 | 347 | 400 | 1.62e-25 | 100 |
| MsG0280011082.01.T01 | MTR_8g036235 | 48.673 | 113 | 23 | 1 | 44 | 156 | 311 | 388 | 4.21e-25 | 99.8 |
| MsG0280011082.01.T01 | MTR_4g033295 | 51.429 | 105 | 16 | 1 | 41 | 145 | 110 | 179 | 7.87e-25 | 94.7 |
| MsG0280011082.01.T01 | MTR_3g027650 | 51.961 | 102 | 14 | 1 | 44 | 145 | 317 | 383 | 1.13e-23 | 95.9 |
| MsG0280011082.01.T01 | MTR_4g033295 | 80.392 | 51 | 10 | 0 | 43 | 93 | 112 | 162 | 1.95e-22 | 88.6 |
| MsG0280011082.01.T01 | MTR_3g027650 | 77.778 | 45 | 10 | 0 | 44 | 88 | 317 | 361 | 7.17e-17 | 76.6 |
| MsG0280011082.01.T01 | MTR_8g036235 | 72.000 | 50 | 14 | 0 | 44 | 93 | 311 | 360 | 1.34e-16 | 76.3 |
| MsG0280011082.01.T01 | MTR_6g052280 | 68.750 | 48 | 15 | 0 | 41 | 88 | 46 | 93 | 1.03e-15 | 69.7 |
| MsG0280011082.01.T01 | MTR_8g012290 | 35.971 | 139 | 64 | 7 | 42 | 164 | 277 | 406 | 1.15e-11 | 62.0 |
| MsG0280011082.01.T01 | MTR_8g012290 | 35.971 | 139 | 64 | 7 | 42 | 164 | 277 | 406 | 1.24e-11 | 62.0 |
| MsG0280011082.01.T01 | MTR_3g498825 | 40.000 | 110 | 57 | 4 | 47 | 155 | 145 | 246 | 5.61e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011082.01.T01 | AT2G42280 | 47.170 | 159 | 48 | 2 | 5 | 162 | 234 | 357 | 3.12e-36 | 128 |
| MsG0280011082.01.T01 | AT1G51140 | 56.897 | 116 | 15 | 1 | 41 | 156 | 296 | 376 | 2.69e-35 | 126 |
| MsG0280011082.01.T01 | AT2G42280 | 49.286 | 140 | 35 | 2 | 5 | 143 | 234 | 338 | 7.44e-32 | 117 |
| MsG0280011082.01.T01 | AT1G35460 | 49.180 | 122 | 27 | 1 | 41 | 162 | 173 | 259 | 1.05e-31 | 114 |
| MsG0280011082.01.T01 | AT4G09180 | 50.000 | 120 | 25 | 1 | 43 | 162 | 178 | 262 | 4.32e-31 | 113 |
| MsG0280011082.01.T01 | AT1G05805 | 50.877 | 114 | 21 | 1 | 43 | 156 | 277 | 355 | 2.18e-27 | 105 |
| MsG0280011082.01.T01 | AT2G43140 | 46.491 | 114 | 26 | 1 | 43 | 156 | 128 | 206 | 2.88e-25 | 96.7 |
| MsG0280011082.01.T01 | AT2G43140 | 46.491 | 114 | 26 | 1 | 43 | 156 | 225 | 303 | 1.34e-24 | 97.1 |
| MsG0280011082.01.T01 | AT1G35460 | 78.431 | 51 | 11 | 0 | 41 | 91 | 173 | 223 | 4.76e-23 | 91.3 |
| MsG0280011082.01.T01 | AT5G58010 | 32.824 | 131 | 49 | 2 | 20 | 147 | 67 | 161 | 6.70e-12 | 62.4 |
Find 70 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACAGATTTGTAATAATT+TGG | 0.171797 | 2:+79258901 | MsG0280011082.01.T01:three_prime_UTR |
| GTAGATCCATTTAAGCATTT+AGG | 0.178661 | 2:+79259155 | MsG0280011082.01.T01:three_prime_UTR |
| CACTTCTTTCTTCAACAATA+TGG | 0.191107 | 2:+79259042 | MsG0280011082.01.T01:three_prime_UTR |
| CGTACATATTTGTTATTATA+CGG | 0.199213 | 2:-79259211 | None:intergenic |
| ATAGATTTCATCACCAAATA+TGG | 0.204816 | 2:-79259180 | None:intergenic |
| TAGATCCATTTAAGCATTTA+GGG | 0.215667 | 2:+79259156 | MsG0280011082.01.T01:three_prime_UTR |
| ACCCTTTCGGCAATGCTTCT+TGG | 0.230259 | 2:-79258095 | None:intergenic |
| ATGGGCCCTAAATGCTTAAA+TGG | 0.244611 | 2:-79259161 | None:intergenic |
| AAGCATTTAGGGCCCATATT+TGG | 0.290567 | 2:+79259167 | MsG0280011082.01.T01:three_prime_UTR |
| CCCTTTCGGCAATGCTTCTT+GGG | 0.290663 | 2:-79258094 | None:intergenic |
| GGGGTGAATGAATTTATCTT+TGG | 0.299991 | 2:-79258978 | None:intergenic |
| CGTTTACGTTTCACATTGAA+TGG | 0.311932 | 2:+79259232 | MsG0280011082.01.T01:three_prime_UTR |
| CATGGTACCTTATCCATGTT+TGG | 0.320678 | 2:-79258515 | None:intergenic |
| TAAATTGGCTTCAGGTTAGA+AGG | 0.325551 | 2:+79258450 | MsG0280011082.01.T01:intron |
| ATCAATAATCCATACCCTTT+CGG | 0.345815 | 2:-79258108 | None:intergenic |
| AATGAAGAAAATGAAGCTTT+TGG | 0.348594 | 2:+79257689 | MsG0280011082.01.T01:CDS |
| AAAGTCATGGAACGAATATA+TGG | 0.358052 | 2:+79257714 | MsG0280011082.01.T01:CDS |
| GAAGATGGAGATAAATTAGT+AGG | 0.368545 | 2:+79259015 | MsG0280011082.01.T01:three_prime_UTR |
| CATTCACATAAATTAATGTA+TGG | 0.378922 | 2:-79258574 | None:intergenic |
| GAACGAATATATGGATTATC+AGG | 0.381589 | 2:+79257723 | MsG0280011082.01.T01:CDS |
| ACTTCTTTCTTCAACAATAT+GGG | 0.388455 | 2:+79259043 | MsG0280011082.01.T01:three_prime_UTR |
| CCCAAGAAGCATTGCCGAAA+GGG | 0.390620 | 2:+79258094 | MsG0280011082.01.T01:CDS |
| TATTTGGTGATGAAATCTAT+TGG | 0.406590 | 2:+79259183 | MsG0280011082.01.T01:three_prime_UTR |
| TTCGGCAATGCTTCTTGGGT+GGG | 0.408101 | 2:-79258090 | None:intergenic |
| AAGGTACCATGCTTCATGAT+TGG | 0.409096 | 2:+79258527 | MsG0280011082.01.T01:CDS |
| GTAACAAATAAAGCTAATCT+AGG | 0.437927 | 2:-79258944 | None:intergenic |
| AACAAAATGTGTCGGTGTCT+CGG | 0.438056 | 2:-79259284 | None:intergenic |
| CTAAAATTAGTGAGCGTATG+AGG | 0.443405 | 2:+79258474 | MsG0280011082.01.T01:CDS |
| CAACAATATGGGAACTAGCT+AGG | 0.446728 | 2:+79259054 | MsG0280011082.01.T01:three_prime_UTR |
| AATTAAGTTGAGTGTAATTG+AGG | 0.448480 | 2:+79259095 | MsG0280011082.01.T01:three_prime_UTR |
| AGCAGCAACAACAACAATAA+CGG | 0.452797 | 2:+79258851 | MsG0280011082.01.T01:CDS |
| CATCTTCATTATGTACATCA+AGG | 0.461161 | 2:-79258999 | None:intergenic |
| ATGGTACCTTATCCATGTTT+GGG | 0.462347 | 2:-79258514 | None:intergenic |
| TATGAGGAAGCTACAAGATC+TGG | 0.475457 | 2:+79258490 | MsG0280011082.01.T01:CDS |
| TTTCGGCAATGCTTCTTGGG+TGG | 0.478638 | 2:-79258091 | None:intergenic |
| AACAATATGGGAACTAGCTA+GGG | 0.482479 | 2:+79259055 | MsG0280011082.01.T01:three_prime_UTR |
| TACGTTTCACATTGAATGGT+TGG | 0.486627 | 2:+79259236 | MsG0280011082.01.T01:three_prime_UTR |
| TAGATTTCATCACCAAATAT+GGG | 0.495278 | 2:-79259179 | None:intergenic |
| TCTGGTCCCAAACATGGATA+AGG | 0.497918 | 2:+79258508 | MsG0280011082.01.T01:CDS |
| GCGTTGGATTATAACATGGT+GGG | 0.500696 | 2:+79259258 | MsG0280011082.01.T01:three_prime_UTR |
| GTTGTTGTTGCTGCTTGTGT+GGG | 0.500762 | 2:-79258843 | None:intergenic |
| ATTAAGTTGAGTGTAATTGA+GGG | 0.507443 | 2:+79259096 | MsG0280011082.01.T01:three_prime_UTR |
| GTGGGTGGCACAACCTCGCT+TGG | 0.508441 | 2:-79258072 | None:intergenic |
| CTTGATGTACATAATGAAGA+TGG | 0.510561 | 2:+79259000 | MsG0280011082.01.T01:three_prime_UTR |
| GGCAATGCTTCTTGGGTGGG+TGG | 0.511007 | 2:-79258087 | None:intergenic |
| TGTTGTTGTTGCTGCTTGTG+TGG | 0.515976 | 2:-79258844 | None:intergenic |
| CACAGCAGATATGTTGGACT+TGG | 0.518004 | 2:+79258643 | MsG0280011082.01.T01:CDS |
| CGTTGGATTATAACATGGTG+GGG | 0.523213 | 2:+79259259 | MsG0280011082.01.T01:three_prime_UTR |
| TCACATTGAATGGTTGGCGT+TGG | 0.523297 | 2:+79259242 | MsG0280011082.01.T01:three_prime_UTR |
| ATCTTCATTATGTACATCAA+GGG | 0.529039 | 2:-79258998 | None:intergenic |
| AACTAGCTAGGGAAGAAAAG+TGG | 0.533515 | 2:+79259066 | MsG0280011082.01.T01:three_prime_UTR |
| AACAAACACAGCAGATATGT+TGG | 0.533839 | 2:+79258637 | MsG0280011082.01.T01:CDS |
| AAGATGGAGATAAATTAGTA+GGG | 0.538731 | 2:+79259016 | MsG0280011082.01.T01:three_prime_UTR |
| ATGAAAATTCGTGCCAAGCG+AGG | 0.540193 | 2:+79258059 | MsG0280011082.01.T01:CDS |
| AGATATGTTGGACTTGGCTG+TGG | 0.548724 | 2:+79258649 | MsG0280011082.01.T01:CDS |
| AATTATTACAAATCTGTACA+TGG | 0.552431 | 2:-79258898 | None:intergenic |
| AGACCTTCAAAAGCAAGCTC+AGG | 0.554514 | 2:+79258682 | MsG0280011082.01.T01:CDS |
| GGCGTTGGATTATAACATGG+TGG | 0.567678 | 2:+79259257 | MsG0280011082.01.T01:three_prime_UTR |
| ACAAGATCTGGTCCCAAACA+TGG | 0.576424 | 2:+79258502 | MsG0280011082.01.T01:CDS |
| ACCCAAGAAGCATTGCCGAA+AGG | 0.582792 | 2:+79258093 | MsG0280011082.01.T01:CDS |
| AATCTAGGTAGATTCTAACT+TGG | 0.597414 | 2:-79258929 | None:intergenic |
| ATAGCTGAAGGTGGTGACAA+AGG | 0.605777 | 2:+79257653 | MsG0280011082.01.T01:CDS |
| TTAAAACCAATCATGAAGCA+TGG | 0.606886 | 2:-79258533 | None:intergenic |
| ACTAGCTAGGGAAGAAAAGT+GGG | 0.615706 | 2:+79259067 | MsG0280011082.01.T01:three_prime_UTR |
| TTAATGTCAACAATAGCTGA+AGG | 0.637163 | 2:+79257641 | None:intergenic |
| ATATAACCAACAAAATGTGT+CGG | 0.643920 | 2:-79259292 | None:intergenic |
| AAATGGATCTACTTACCACA+TGG | 0.645200 | 2:-79259144 | None:intergenic |
| TCTTCATTATGTACATCAAG+GGG | 0.648537 | 2:-79258997 | None:intergenic |
| ATGTCAACAATAGCTGAAGG+TGG | 0.661323 | 2:+79257644 | MsG0280011082.01.T01:CDS |
| GTTGGCGTTGGATTATAACA+TGG | 0.729880 | 2:+79259254 | MsG0280011082.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAACTAAATATGTAAAT+TGG | - | Chr2:79258328-79258347 | None:intergenic | 15.0% |
| !! | CTAAACAAAAGAATAATATA+GGG | - | Chr2:79258294-79258313 | None:intergenic | 15.0% |
| !! | AATTATTACAAATCTGTACA+TGG | - | Chr2:79258901-79258920 | None:intergenic | 20.0% |
| !! | CATTCACATAAATTAATGTA+TGG | - | Chr2:79258577-79258596 | None:intergenic | 20.0% |
| !! | CCTAAACAAAAGAATAATAT+AGG | - | Chr2:79258295-79258314 | None:intergenic | 20.0% |
| !! | TGTACAGATTTGTAATAATT+TGG | + | Chr2:79258901-79258920 | MsG0280011082.01.T01:three_prime_UTR | 20.0% |
| !!! | ACTATTAAGACATGATTTTT+GGG | + | Chr2:79258354-79258373 | MsG0280011082.01.T01:intron | 20.0% |
| !!! | CCTATATTATTCTTTTGTTT+AGG | + | Chr2:79258292-79258311 | MsG0280011082.01.T01:intron | 20.0% |
| !!! | CGTACATATTTGTTATTATA+CGG | - | Chr2:79259214-79259233 | None:intergenic | 20.0% |
| !!! | TACTATTAAGACATGATTTT+TGG | + | Chr2:79258353-79258372 | MsG0280011082.01.T01:intron | 20.0% |
| !!! | TCAATAAAACAACAATTTTC+TGG | + | Chr2:79257817-79257836 | MsG0280011082.01.T01:intron | 20.0% |
| ! | AAGATGGAGATAAATTAGTA+GGG | + | Chr2:79259016-79259035 | MsG0280011082.01.T01:three_prime_UTR | 25.0% |
| ! | ACTTCTTTCTTCAACAATAT+GGG | + | Chr2:79259043-79259062 | MsG0280011082.01.T01:three_prime_UTR | 25.0% |
| ! | ATAGATTTCATCACCAAATA+TGG | - | Chr2:79259183-79259202 | None:intergenic | 25.0% |
| ! | ATCTTCATTATGTACATCAA+GGG | - | Chr2:79259001-79259020 | None:intergenic | 25.0% |
| ! | CTCTTAACACATCATTAAAT+TGG | + | Chr2:79258435-79258454 | MsG0280011082.01.T01:intron | 25.0% |
| ! | GTAACAAATAAAGCTAATCT+AGG | - | Chr2:79258947-79258966 | None:intergenic | 25.0% |
| ! | GTGTTGGAAGAAAATTAATT+AGG | - | Chr2:79258783-79258802 | None:intergenic | 25.0% |
| ! | TAGAATTATCTATAACCAAG+TGG | - | Chr2:79258257-79258276 | None:intergenic | 25.0% |
| ! | TAGATCCATTTAAGCATTTA+GGG | + | Chr2:79259156-79259175 | MsG0280011082.01.T01:three_prime_UTR | 25.0% |
| ! | TAGATTTCATCACCAAATAT+GGG | - | Chr2:79259182-79259201 | None:intergenic | 25.0% |
| ! | TCTTAAGTGTAGTTTCTTAA+TGG | + | Chr2:79257884-79257903 | MsG0280011082.01.T01:intron | 25.0% |
| !! | AATGAAGAAAATGAAGCTTT+TGG | + | Chr2:79257689-79257708 | MsG0280011082.01.T01:CDS | 25.0% |
| !! | CATTTGACATGATTTTGTTA+TGG | + | Chr2:79257912-79257931 | MsG0280011082.01.T01:intron | 25.0% |
| !! | CTATTAAGACATGATTTTTG+GGG | + | Chr2:79258355-79258374 | MsG0280011082.01.T01:intron | 25.0% |
| !!! | AATTAAGTTGAGTGTAATTG+AGG | + | Chr2:79259095-79259114 | MsG0280011082.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTAAGTTGAGTGTAATTGA+GGG | + | Chr2:79259096-79259115 | MsG0280011082.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTTTCTGGTTTAAATGTTC+AGG | + | Chr2:79257831-79257850 | MsG0280011082.01.T01:intron | 25.0% |
| !!! | GATTGGTTTTAACATTTGTA+AGG | + | Chr2:79258544-79258563 | MsG0280011082.01.T01:CDS | 25.0% |
| !!! | TATTTGGTGATGAAATCTAT+TGG | + | Chr2:79259183-79259202 | MsG0280011082.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTTACCTTAGTTCTTATG+AGG | + | Chr2:79258141-79258160 | MsG0280011082.01.T01:intron | 25.0% |
| AAAGTCATGGAACGAATATA+TGG | + | Chr2:79257714-79257733 | MsG0280011082.01.T01:CDS | 30.0% | |
| AATCTAGGTAGATTCTAACT+TGG | - | Chr2:79258932-79258951 | None:intergenic | 30.0% | |
| ATCAATAATCCATACCCTTT+CGG | - | Chr2:79258111-79258130 | None:intergenic | 30.0% | |
| ATGGTTGATTAGAATGAAAC+AGG | + | Chr2:79257931-79257950 | MsG0280011082.01.T01:intron | 30.0% | |
| CACTTCTTTCTTCAACAATA+TGG | + | Chr2:79259042-79259061 | MsG0280011082.01.T01:three_prime_UTR | 30.0% | |
| CATCTTCATTATGTACATCA+AGG | - | Chr2:79259002-79259021 | None:intergenic | 30.0% | |
| CTCAAATGGTTAATAAGCTT+CGG | - | Chr2:79258230-79258249 | None:intergenic | 30.0% | |
| CTTGATGTACATAATGAAGA+TGG | + | Chr2:79259000-79259019 | MsG0280011082.01.T01:three_prime_UTR | 30.0% | |
| GAAATGATGTCTGAAAATGT+TGG | + | Chr2:79257765-79257784 | MsG0280011082.01.T01:intron | 30.0% | |
| GAACCTCAATGTACATATAA+TGG | - | Chr2:79258381-79258400 | None:intergenic | 30.0% | |
| GAAGATGGAGATAAATTAGT+AGG | + | Chr2:79259015-79259034 | MsG0280011082.01.T01:three_prime_UTR | 30.0% | |
| GTAGATCCATTTAAGCATTT+AGG | + | Chr2:79259155-79259174 | MsG0280011082.01.T01:three_prime_UTR | 30.0% | |
| GTGTTTGTTTGCTTCAAAAA+AGG | - | Chr2:79258626-79258645 | None:intergenic | 30.0% | |
| TCTTCATTATGTACATCAAG+GGG | - | Chr2:79259000-79259019 | None:intergenic | 30.0% | |
| TTAAAACCAATCATGAAGCA+TGG | - | Chr2:79258536-79258555 | None:intergenic | 30.0% | |
| ! | GAACGAATATATGGATTATC+AGG | + | Chr2:79257723-79257742 | MsG0280011082.01.T01:CDS | 30.0% |
| AAATGGATCTACTTACCACA+TGG | - | Chr2:79259147-79259166 | None:intergenic | 35.0% | |
| AACAAACACAGCAGATATGT+TGG | + | Chr2:79258637-79258656 | MsG0280011082.01.T01:CDS | 35.0% | |
| AACAATATGGGAACTAGCTA+GGG | + | Chr2:79259055-79259074 | MsG0280011082.01.T01:three_prime_UTR | 35.0% | |
| AGCAGCAACAACAACAATAA+CGG | + | Chr2:79258851-79258870 | MsG0280011082.01.T01:CDS | 35.0% | |
| AGGACATTCTAATTCTCCTT+TGG | + | Chr2:79257957-79257976 | MsG0280011082.01.T01:intron | 35.0% | |
| ATACTCAATTGATGAGCCAA+AGG | - | Chr2:79257976-79257995 | None:intergenic | 35.0% | |
| ATGATGTCTGAAAATGTTGG+TGG | + | Chr2:79257768-79257787 | MsG0280011082.01.T01:intron | 35.0% | |
| ATGGTACCTTATCCATGTTT+GGG | - | Chr2:79258517-79258536 | None:intergenic | 35.0% | |
| CGTTTACGTTTCACATTGAA+TGG | + | Chr2:79259232-79259251 | MsG0280011082.01.T01:three_prime_UTR | 35.0% | |
| CTAAAATTAGTGAGCGTATG+AGG | + | Chr2:79258474-79258493 | MsG0280011082.01.T01:CDS | 35.0% | |
| GCCAAATACTTCATCTGAAA+TGG | + | Chr2:79257996-79258015 | MsG0280011082.01.T01:intron | 35.0% | |
| GGGGTGAATGAATTTATCTT+TGG | - | Chr2:79258981-79259000 | None:intergenic | 35.0% | |
| GGTAGAATACTATCTAGCAT+TGG | + | Chr2:79257852-79257871 | MsG0280011082.01.T01:intron | 35.0% | |
| GTATGTACAAAAAGTCCATG+TGG | + | Chr2:79259129-79259148 | MsG0280011082.01.T01:three_prime_UTR | 35.0% | |
| GTTGATTAGAATGAAACAGG+AGG | + | Chr2:79257934-79257953 | MsG0280011082.01.T01:intron | 35.0% | |
| TACGTTTCACATTGAATGGT+TGG | + | Chr2:79259236-79259255 | MsG0280011082.01.T01:three_prime_UTR | 35.0% | |
| TACTTGCCTCATAAGAACTA+AGG | - | Chr2:79258150-79258169 | None:intergenic | 35.0% | |
| TGAAGCTTCTATACAAGTGT+TGG | - | Chr2:79258799-79258818 | None:intergenic | 35.0% | |
| TGGTTAATAAGCTTCGGTTA+AGG | - | Chr2:79258224-79258243 | None:intergenic | 35.0% | |
| ! | CACATCATTAAATTGGCTTC+AGG | + | Chr2:79258442-79258461 | MsG0280011082.01.T01:intron | 35.0% |
| ! | GCCATTTCAGATGAAGTATT+TGG | - | Chr2:79258000-79258019 | None:intergenic | 35.0% |
| ! | TAAATTGGCTTCAGGTTAGA+AGG | + | Chr2:79258450-79258469 | MsG0280011082.01.T01:intron | 35.0% |
| !! | GGATTATCAGGTTGATACTT+GGG | + | Chr2:79257735-79257754 | MsG0280011082.01.T01:intron | 35.0% |
| !! | TGGATTATCAGGTTGATACT+TGG | + | Chr2:79257734-79257753 | MsG0280011082.01.T01:intron | 35.0% |
| AACCATTTGAGCAAACCACT+TGG | + | Chr2:79258239-79258258 | MsG0280011082.01.T01:intron | 40.0% | |
| AACTAGCTAGGGAAGAAAAG+TGG | + | Chr2:79259066-79259085 | MsG0280011082.01.T01:three_prime_UTR | 40.0% | |
| ACTAGCTAGGGAAGAAAAGT+GGG | + | Chr2:79259067-79259086 | MsG0280011082.01.T01:three_prime_UTR | 40.0% | |
| ATGGGCCCTAAATGCTTAAA+TGG | - | Chr2:79259164-79259183 | None:intergenic | 40.0% | |
| ATGTCAACAATAGCTGAAGG+TGG | + | Chr2:79257644-79257663 | MsG0280011082.01.T01:CDS | 40.0% | |
| CAACAATATGGGAACTAGCT+AGG | + | Chr2:79259054-79259073 | MsG0280011082.01.T01:three_prime_UTR | 40.0% | |
| CATGGTACCTTATCCATGTT+TGG | - | Chr2:79258518-79258537 | None:intergenic | 40.0% | |
| CGTTGGATTATAACATGGTG+GGG | + | Chr2:79259259-79259278 | MsG0280011082.01.T01:three_prime_UTR | 40.0% | |
| GATTAGAATGAAACAGGAGG+AGG | + | Chr2:79257937-79257956 | MsG0280011082.01.T01:intron | 40.0% | |
| GCGTTGGATTATAACATGGT+GGG | + | Chr2:79259258-79259277 | MsG0280011082.01.T01:three_prime_UTR | 40.0% | |
| GGGCCATTATATGTACATTG+AGG | + | Chr2:79258375-79258394 | MsG0280011082.01.T01:intron | 40.0% | |
| TATGAGGAAGCTACAAGATC+TGG | + | Chr2:79258490-79258509 | MsG0280011082.01.T01:CDS | 40.0% | |
| ! | AACAAAATGTGTCGGTGTCT+CGG | - | Chr2:79259287-79259306 | None:intergenic | 40.0% |
| ! | AAGCATTTAGGGCCCATATT+TGG | + | Chr2:79259167-79259186 | MsG0280011082.01.T01:three_prime_UTR | 40.0% |
| ! | AAGGTACCATGCTTCATGAT+TGG | + | Chr2:79258527-79258546 | MsG0280011082.01.T01:CDS | 40.0% |
| ! | GAAGCTTTTGGTGAAAGTCA+TGG | + | Chr2:79257701-79257720 | MsG0280011082.01.T01:CDS | 40.0% |
| ! | GTTGGCGTTGGATTATAACA+TGG | + | Chr2:79259254-79259273 | MsG0280011082.01.T01:three_prime_UTR | 40.0% |
| ! | TTCATCTGAAATGGCAGCTA+TGG | + | Chr2:79258005-79258024 | MsG0280011082.01.T01:intron | 40.0% |
| !! | AACCAAGTGGTTTGCTCAAA+TGG | - | Chr2:79258244-79258263 | None:intergenic | 40.0% |
| !! | ATACCTGAGCTTGCTTTTGA+AGG | - | Chr2:79258688-79258707 | None:intergenic | 40.0% |
| ACAAGATCTGGTCCCAAACA+TGG | + | Chr2:79258502-79258521 | MsG0280011082.01.T01:CDS | 45.0% | |
| AGACCTTCAAAAGCAAGCTC+AGG | + | Chr2:79258682-79258701 | MsG0280011082.01.T01:CDS | 45.0% | |
| AGATATGTTGGACTTGGCTG+TGG | + | Chr2:79258649-79258668 | MsG0280011082.01.T01:CDS | 45.0% | |
| ATAGCTGAAGGTGGTGACAA+AGG | + | Chr2:79257653-79257672 | MsG0280011082.01.T01:CDS | 45.0% | |
| ATGAAAATTCGTGCCAAGCG+AGG | + | Chr2:79258059-79258078 | MsG0280011082.01.T01:CDS | 45.0% | |
| CACAGCAGATATGTTGGACT+TGG | + | Chr2:79258643-79258662 | MsG0280011082.01.T01:CDS | 45.0% | |
| TCACATTGAATGGTTGGCGT+TGG | + | Chr2:79259242-79259261 | MsG0280011082.01.T01:three_prime_UTR | 45.0% | |
| TCTGGTCCCAAACATGGATA+AGG | + | Chr2:79258508-79258527 | MsG0280011082.01.T01:CDS | 45.0% | |
| ! | CGCTTGGCACGAATTTTCAT+CGG | - | Chr2:79258059-79258078 | None:intergenic | 45.0% |
| ! | GAGACACCGACACATTTTGT+TGG | + | Chr2:79259286-79259305 | MsG0280011082.01.T01:three_prime_UTR | 45.0% |
| ! | GGCGTTGGATTATAACATGG+TGG | + | Chr2:79259257-79259276 | MsG0280011082.01.T01:three_prime_UTR | 45.0% |
| ! | GTTGTTGTTGCTGCTTGTGT+GGG | - | Chr2:79258846-79258865 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGCTGCTTGTG+TGG | - | Chr2:79258847-79258866 | None:intergenic | 45.0% |
| ACCCTTTCGGCAATGCTTCT+TGG | - | Chr2:79258098-79258117 | None:intergenic | 50.0% | |
| CCCTTTCGGCAATGCTTCTT+GGG | - | Chr2:79258097-79258116 | None:intergenic | 50.0% | |
| TTCGGCAATGCTTCTTGGGT+GGG | - | Chr2:79258093-79258112 | None:intergenic | 50.0% | |
| TTTCGGCAATGCTTCTTGGG+TGG | - | Chr2:79258094-79258113 | None:intergenic | 50.0% | |
| !! | ACCCAAGAAGCATTGCCGAA+AGG | + | Chr2:79258093-79258112 | MsG0280011082.01.T01:CDS | 50.0% |
| !! | CCCAAGAAGCATTGCCGAAA+GGG | + | Chr2:79258094-79258113 | MsG0280011082.01.T01:CDS | 50.0% |
| !! | GAAGCATTGCCGAAAGGGTA+TGG | + | Chr2:79258099-79258118 | MsG0280011082.01.T01:intron | 50.0% |
| GGCAATGCTTCTTGGGTGGG+TGG | - | Chr2:79258090-79258109 | None:intergenic | 60.0% | |
| GTGGGTGGCACAACCTCGCT+TGG | - | Chr2:79258075-79258094 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 79257644 | 79259312 | 79257644 | ID=MsG0280011082.01;Name=MsG0280011082.01 |
| Chr2 | mRNA | 79257644 | 79259312 | 79257644 | ID=MsG0280011082.01.T01;Parent=MsG0280011082.01;Name=MsG0280011082.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0.66|0.25|1|0|0|4|442|164 |
| Chr2 | exon | 79257644 | 79257744 | 79257644 | ID=MsG0280011082.01.T01:exon:21358;Parent=MsG0280011082.01.T01 |
| Chr2 | exon | 79258022 | 79258115 | 79258022 | ID=MsG0280011082.01.T01:exon:21359;Parent=MsG0280011082.01.T01 |
| Chr2 | exon | 79258464 | 79258703 | 79258464 | ID=MsG0280011082.01.T01:exon:21360;Parent=MsG0280011082.01.T01 |
| Chr2 | exon | 79258811 | 79259312 | 79258811 | ID=MsG0280011082.01.T01:exon:21361;Parent=MsG0280011082.01.T01 |
| Chr2 | CDS | 79257644 | 79257744 | 79257644 | ID=MsG0280011082.01.T01:cds;Parent=MsG0280011082.01.T01 |
| Chr2 | CDS | 79258022 | 79258115 | 79258022 | ID=MsG0280011082.01.T01:cds;Parent=MsG0280011082.01.T01 |
| Chr2 | CDS | 79258464 | 79258703 | 79258464 | ID=MsG0280011082.01.T01:cds;Parent=MsG0280011082.01.T01 |
| Chr2 | CDS | 79258811 | 79258870 | 79258811 | ID=MsG0280011082.01.T01:cds;Parent=MsG0280011082.01.T01 |
| Chr2 | three_prime_UTR | 79258871 | 79259312 | 79258871 | ID=MsG0280011082.01.T01:three_prime_utr;Parent=MsG0280011082.01.T01 |
| Gene Sequence |
| Protein sequence |
