AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011104.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011104.01.T01 MTR_2g098880 96.032 252 10 0 1 252 1 252 0.0 503
MsG0280011104.01.T01 MTR_2g098880 96.032 252 10 0 1 252 13 264 0.0 502
MsG0280011104.01.T01 MTR_3g006370 36.269 193 103 5 55 243 44 220 3.30e-35 125
MsG0280011104.01.T01 MTR_2g098920 37.634 186 101 5 60 243 79 251 6.02e-34 123
MsG0280011104.01.T01 MTR_4g067290 37.222 180 103 4 60 239 75 244 1.32e-31 117
MsG0280011104.01.T01 MTR_4g067290 37.222 180 103 4 60 239 55 224 1.34e-31 116
MsG0280011104.01.T01 MTR_4g067290 37.222 180 103 4 60 239 115 284 4.85e-31 116
MsG0280011104.01.T01 MTR_4g067290 37.158 183 97 6 60 239 55 222 9.88e-31 114
MsG0280011104.01.T01 MTR_4g067290 37.158 183 97 6 60 239 73 240 1.25e-30 114
MsG0280011104.01.T01 MTR_4g067290 37.158 183 97 6 60 239 75 242 1.29e-30 114
MsG0280011104.01.T01 MTR_7g028855 33.775 151 90 5 24 170 84 228 1.24e-11 64.3
MsG0280011104.01.T01 MTR_1g057920 33.884 121 71 4 32 151 11 123 1.76e-11 60.5
MsG0280011104.01.T01 MTR_1g070355 33.333 102 66 2 65 165 78 178 2.44e-11 63.5
MsG0280011104.01.T01 MTR_2g070590 34.286 105 66 2 61 164 17 119 6.89e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011104.01.T01 AT2G43280 43.077 195 89 6 54 243 15 192 5.41e-42 142
MsG0280011104.01.T01 AT3G07500 39.894 188 106 3 56 243 28 208 1.61e-39 136
MsG0280011104.01.T01 AT2G43280 44.509 173 74 6 76 243 2 157 1.32e-37 130
MsG0280011104.01.T01 AT3G59470 35.586 222 124 7 31 244 32 242 3.01e-35 126
MsG0280011104.01.T01 AT3G59470 35.586 222 124 7 31 244 32 242 3.01e-35 126
MsG0280011104.01.T01 AT3G59470 35.586 222 124 7 31 244 44 254 3.81e-35 126
MsG0280011104.01.T01 AT4G12850 34.783 184 104 4 60 243 10 177 3.95e-33 119
MsG0280011104.01.T01 AT4G38180 44.262 122 67 1 50 170 62 183 1.13e-23 100
MsG0280011104.01.T01 AT4G12850 39.048 105 59 1 60 164 10 109 4.76e-22 89.0
MsG0280011104.01.T01 AT4G12850 39.048 105 59 1 60 164 10 109 5.09e-22 89.0
MsG0280011104.01.T01 AT5G18960 42.453 106 46 1 59 164 41 131 5.16e-21 92.4
MsG0280011104.01.T01 AT5G18960 35.238 105 53 1 60 164 210 299 2.59e-15 75.5
MsG0280011104.01.T01 AT5G18960 42.453 106 46 1 59 164 41 131 5.16e-21 92.4
MsG0280011104.01.T01 AT5G18960 35.238 105 53 1 60 164 210 299 2.59e-15 75.5
MsG0280011104.01.T01 AT3G06250 41.509 106 47 1 59 164 26 116 2.54e-20 90.5
MsG0280011104.01.T01 AT3G06250 36.066 122 59 2 43 164 176 278 1.01e-16 79.7
MsG0280011104.01.T01 AT3G06250 41.509 106 47 1 59 164 26 116 2.54e-20 90.5
MsG0280011104.01.T01 AT3G06250 36.066 122 59 2 43 164 176 278 1.01e-16 79.7
MsG0280011104.01.T01 AT3G06250 41.509 106 47 1 59 164 26 116 2.54e-20 90.5
MsG0280011104.01.T01 AT3G06250 36.066 122 59 2 43 164 176 278 1.01e-16 79.7
MsG0280011104.01.T01 AT2G27110 37.008 127 62 3 41 166 28 137 5.25e-15 74.7
MsG0280011104.01.T01 AT2G27110 37.008 127 62 3 41 166 28 137 5.25e-15 74.7
MsG0280011104.01.T01 AT3G22170 31.707 123 73 1 59 170 68 190 1.31e-14 73.6
MsG0280011104.01.T01 AT3G22170 31.707 123 73 1 59 170 68 190 1.31e-14 73.6
MsG0280011104.01.T01 AT2G32250 34.653 101 61 1 64 164 41 136 1.46e-13 70.5
MsG0280011104.01.T01 AT2G32250 34.653 101 61 1 64 164 41 136 1.48e-13 70.5
MsG0280011104.01.T01 AT2G32250 34.653 101 61 1 64 164 41 136 1.48e-13 70.5
MsG0280011104.01.T01 AT2G32250 34.653 101 61 1 64 164 41 136 1.48e-13 70.5
MsG0280011104.01.T01 AT2G32250 34.653 101 61 1 64 164 41 136 1.51e-13 70.5
MsG0280011104.01.T01 AT2G32250 34.653 101 61 1 64 164 41 136 1.51e-13 70.5
MsG0280011104.01.T01 AT4G19990 31.579 114 67 1 64 166 38 151 7.35e-13 68.2
MsG0280011104.01.T01 AT4G19990 31.579 114 67 1 64 166 24 137 8.18e-13 68.2
MsG0280011104.01.T01 AT4G19990 31.579 114 67 1 64 166 24 137 8.18e-13 68.2
MsG0280011104.01.T01 AT4G19990 31.579 114 67 1 64 166 24 137 8.48e-13 68.2
MsG0280011104.01.T01 AT4G19990 31.579 114 67 1 64 166 24 137 8.48e-13 68.2
MsG0280011104.01.T01 AT4G19990 31.579 114 67 1 64 166 24 137 8.73e-13 68.2
MsG0280011104.01.T01 AT2G32250 34.000 100 61 1 65 164 1 95 1.23e-12 67.8
MsG0280011104.01.T01 AT2G32250 34.000 100 61 1 65 164 1 95 1.24e-12 67.8
MsG0280011104.01.T01 AT1G76320 32.673 101 63 1 65 165 1 96 2.56e-12 66.6
MsG0280011104.01.T01 AT1G76320 30.159 126 82 2 65 190 1 120 2.70e-12 66.6
MsG0280011104.01.T01 AT1G76320 30.159 126 82 2 65 190 1 120 2.70e-12 66.6
MsG0280011104.01.T01 AT1G76320 30.159 126 82 2 65 190 1 120 3.05e-12 66.6
MsG0280011104.01.T01 AT1G80010 33.654 104 63 1 61 164 95 192 4.33e-12 65.9
MsG0280011104.01.T01 AT4G15090 31.776 107 71 1 59 165 49 153 4.93e-12 65.9
MsG0280011104.01.T01 AT4G15090 31.776 107 71 1 59 165 49 153 4.93e-12 65.9
MsG0280011104.01.T01 AT4G15090 31.776 107 71 1 59 165 49 153 4.93e-12 65.9
MsG0280011104.01.T01 AT4G15090 31.776 107 71 1 59 165 49 153 4.93e-12 65.9
MsG0280011104.01.T01 AT4G15090 31.776 107 71 1 59 165 49 153 4.93e-12 65.9
MsG0280011104.01.T01 AT1G52520 32.692 104 64 1 61 164 85 182 7.94e-12 65.1

Find 108 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTGTTGCCAGACATTC+TGG 0.240332 2:+79636865 MsG0280011104.01.T01:three_prime_UTR
CATGATAAGGTTGGCTTTAC+GGG 0.249268 2:+79635716 MsG0280011104.01.T01:CDS
TCAGGCAGCTTATAGTATAT+TGG 0.257458 2:+79636984 MsG0280011104.01.T01:three_prime_UTR
TGTATGTTCCTTCACAAATT+TGG 0.258446 2:-79635760 None:intergenic
CCATGATAAGGTTGGCTTTA+CGG 0.274945 2:+79635715 MsG0280011104.01.T01:CDS
TCTCGGGTGGCTGGTGGAGG+AGG 0.303392 2:-79635681 None:intergenic
CCAATAAGTGGTAGTGTTGC+TGG 0.306921 2:+79633115 None:intergenic
CAGGCAGCTTATAGTATATT+GGG 0.309678 2:+79636985 MsG0280011104.01.T01:three_prime_UTR
TTCTGGTGTGTATCATGTTC+GGG 0.310325 2:+79637017 MsG0280011104.01.T01:three_prime_UTR
TGTTGCTGGGTTTCTCTAGT+TGG 0.311700 2:+79633129 None:intergenic
CCTCAATCTCTCTGATATTT+CGG 0.319830 2:-79636798 None:intergenic
CTATTCGCTTTGCTTAAATC+TGG 0.323238 2:+79633473 MsG0280011104.01.T01:five_prime_UTR
AAATACAATTCTGAACGATT+TGG 0.340360 2:+79636732 MsG0280011104.01.T01:CDS
TTACTCGCGAACGGCGGTTA+TGG 0.347299 2:-79635572 None:intergenic
AATGTAATTCTATCAACATT+TGG 0.351343 2:+79636925 MsG0280011104.01.T01:three_prime_UTR
CGAGTAAATAACAAGCTAAT+TGG 0.351629 2:+79635588 MsG0280011104.01.T01:CDS
TGCTCACTCACTTGCTGTAT+TGG 0.363115 2:-79637171 None:intergenic
CTGGGTTTCTCTAGTTGGTA+TGG 0.364275 2:+79633134 MsG0280011104.01.T01:five_prime_UTR
TTTCTGGTGTGTATCATGTT+CGG 0.364987 2:+79637016 MsG0280011104.01.T01:three_prime_UTR
ATGCAAGGATACAATGGATA+TGG 0.368107 2:-79637105 None:intergenic
TCATGGCTTGACAACCTTCT+CGG 0.378795 2:-79635698 None:intergenic
GAAAACTTCAAATTGCGAAT+AGG 0.381872 2:-79636901 None:intergenic
CCTTCTCGGGTGGCTGGTGG+AGG 0.389419 2:-79635684 None:intergenic
GAAGTTCCATGGCGAGGATC+CGG 0.395395 2:+79635804 MsG0280011104.01.T01:CDS
TTCAACAAGAGCAGCATGTT+AGG 0.401213 2:-79637061 None:intergenic
CTCACTAACCAAGTGCTTCC+CGG 0.404686 2:-79635823 None:intergenic
CATGGCTTGACAACCTTCTC+GGG 0.412731 2:-79635697 None:intergenic
AAGTATCTCACCAGAATGTC+TGG 0.414991 2:-79636875 None:intergenic
AGTGGTCATATTAAAACTTC+AGG 0.420723 2:+79636966 MsG0280011104.01.T01:three_prime_UTR
TGACAACCTTCTCGGGTGGC+TGG 0.424878 2:-79635690 None:intergenic
GACCGTTTGTGCAACTGAAT+GGG 0.430776 2:-79633238 None:intergenic
TCCTCGCCATGGAACTTCAC+TGG 0.443266 2:-79635799 None:intergenic
AGGATGATGGATCACCAATC+TGG 0.443741 2:+79635297 MsG0280011104.01.T01:intron
GACACATTAGAACCATTCAT+AGG 0.454194 2:+79635468 MsG0280011104.01.T01:CDS
TGTCACAGGACGAGAAAGAT+AGG 0.454669 2:+79636629 MsG0280011104.01.T01:intron
AATCAAATCCCTGGCCAGAT+TGG 0.455766 2:-79635311 None:intergenic
CGAACAACCTGTAGCAGATT+CGG 0.459103 2:+79635446 MsG0280011104.01.T01:CDS
CCGAAATATCAGAGAGATTG+AGG 0.462386 2:+79636798 MsG0280011104.01.T01:CDS
CTCGGGTGGCTGGTGGAGGA+GGG 0.466145 2:-79635680 None:intergenic
ATCAACATTTGGCTTGAAGT+TGG 0.469414 2:+79636936 MsG0280011104.01.T01:three_prime_UTR
AAATGGTTTACCTATTATCC+AGG 0.470951 2:-79633521 None:intergenic
CTGGCAACAATGGAATATAC+TGG 0.471446 2:-79636856 None:intergenic
AATAAATCAAAATGTGCAGC+TGG 0.482642 2:-79637147 None:intergenic
GATGGATCACCAATCTGGCC+AGG 0.492007 2:+79635302 MsG0280011104.01.T01:CDS
CTTGAAGTTGGTTGGTGTAG+TGG 0.495027 2:+79636948 MsG0280011104.01.T01:three_prime_UTR
CAACCTTCTCGGGTGGCTGG+TGG 0.497367 2:-79635687 None:intergenic
AGGTTGGCTTTACGGGATGA+AGG 0.498475 2:+79635723 MsG0280011104.01.T01:CDS
AGACATTCTGGTGAGATACT+TGG 0.500017 2:+79636877 MsG0280011104.01.T01:three_prime_UTR
TATTATCCAGGTTGAAAACT+AGG 0.501348 2:-79633509 None:intergenic
TGACCGTTTGTGCAACTGAA+TGG 0.502026 2:-79633239 None:intergenic
AAGTTCCATGGCGAGGATCC+GGG 0.502060 2:+79635805 MsG0280011104.01.T01:CDS
TCAAATTACAACAAAGGTGA+AGG 0.504520 2:-79633209 None:intergenic
AAGGTTGTCAAGCCATGATA+AGG 0.504631 2:+79635703 MsG0280011104.01.T01:CDS
ACGAAAGGCAAAAGTACAAA+AGG 0.509895 2:+79636683 MsG0280011104.01.T01:CDS
CTTTACGGGATGAAGGGAAG+TGG 0.510166 2:+79635730 MsG0280011104.01.T01:CDS
CCTCGCCATGGAACTTCACT+GGG 0.518653 2:-79635798 None:intergenic
AATGTGTCCGAATCTGCTAC+AGG 0.521451 2:-79635453 None:intergenic
AACAATTTAGAATTATGTAC+AGG 0.522470 2:+79635405 MsG0280011104.01.T01:CDS
CGCTCGAGTTGCACAACGAA+AGG 0.523644 2:+79636668 MsG0280011104.01.T01:CDS
AAGATGAAGTGTAGAAGCTC+CGG 0.523959 2:-79633262 None:intergenic
CCGTAAAGCCAACCTTATCA+TGG 0.524530 2:-79635715 None:intergenic
CTTCTGCTATAATAGGATGA+TGG 0.528986 2:+79635284 MsG0280011104.01.T01:intron
CAATAAGTGGTAGTGTTGCT+GGG 0.529326 2:+79633116 None:intergenic
ACCGTTTGTGCAACTGAATG+GGG 0.532948 2:-79633237 None:intergenic
AATGGCCATGGTAGGAGGAT+AGG 0.534923 2:+79635531 MsG0280011104.01.T01:CDS
ACCAGAATGTCTGGCAACAA+TGG 0.538189 2:-79636866 None:intergenic
GGTATGGAGTAGTTCTTCCA+TGG 0.540141 2:+79633150 MsG0280011104.01.T01:five_prime_UTR
GCGAGGATCCGGGAAGCACT+TGG 0.541373 2:+79635815 MsG0280011104.01.T01:CDS
CCTCCACCAGCCACCCGAGA+AGG 0.543028 2:+79635684 MsG0280011104.01.T01:CDS
ACATTTGGCTTGAAGTTGGT+TGG 0.546595 2:+79636940 MsG0280011104.01.T01:three_prime_UTR
AAGGTGAAGGGAATAAGAGA+AGG 0.553305 2:-79633196 None:intergenic
CAATTAATGCAAGGATACAA+TGG 0.556643 2:-79637111 None:intergenic
TGCTTCCCGGATCCTCGCCA+TGG 0.557183 2:-79635810 None:intergenic
TCAGTTGCACAAACGGTCAC+CGG 0.558306 2:+79633243 MsG0280011104.01.T01:five_prime_UTR
TTTACGGGATGAAGGGAAGT+GGG 0.561477 2:+79635731 MsG0280011104.01.T01:CDS
GGCCAGGGATTTGATTCAGA+TGG 0.568231 2:+79635318 MsG0280011104.01.T01:CDS
GGTTGGCTTTACGGGATGAA+GGG 0.571058 2:+79635724 MsG0280011104.01.T01:CDS
TAGGCATGCAGTTCAACTCA+AGG 0.572467 2:+79635487 MsG0280011104.01.T01:CDS
TCTACAATGGCCATGGTAGG+AGG 0.572483 2:+79635526 MsG0280011104.01.T01:CDS
CGGAGTCACTGCACTAACCA+TGG 0.573921 2:-79633167 None:intergenic
GGAATAAGAGAAGGGTTCCT+CGG 0.579433 2:-79633187 None:intergenic
TACCATCTGAATCAAATCCC+TGG 0.581654 2:-79635320 None:intergenic
GCTTGTTATTTACTCGCGAA+CGG 0.583871 2:-79635581 None:intergenic
GGAGGATAGGATTTACAGTA+CGG 0.583900 2:+79635544 MsG0280011104.01.T01:CDS
CAAATTACAACAAAGGTGAA+GGG 0.591945 2:-79633208 None:intergenic
ATTCGATTACAATTAATGCA+AGG 0.594392 2:-79637120 None:intergenic
AGAGAATTCTACAATGGCCA+TGG 0.595180 2:+79635519 MsG0280011104.01.T01:CDS
TTGTCAAGCCATGATAAGGT+TGG 0.599156 2:+79635707 MsG0280011104.01.T01:CDS
CCCAGTGAAGTTCCATGGCG+AGG 0.602502 2:+79635798 MsG0280011104.01.T01:CDS
TAAATCCTATCCTCCTACCA+TGG 0.603101 2:-79635536 None:intergenic
GGTTGTTCAAATTACAACAA+AGG 0.604368 2:-79633215 None:intergenic
TTGAACTGCATGCCTATGAA+TGG 0.604946 2:-79635480 None:intergenic
TGAGTCCCAGTGAAGTTCCA+TGG 0.607822 2:+79635793 MsG0280011104.01.T01:CDS
ATGGATCACCAATCTGGCCA+GGG 0.613451 2:+79635303 MsG0280011104.01.T01:CDS
AATTCTACAATGGCCATGGT+AGG 0.613869 2:+79635523 MsG0280011104.01.T01:CDS
GGCTTGACAACCTTCTCGGG+TGG 0.617601 2:-79635694 None:intergenic
GGTTGTCACCAAATTTGTGA+AGG 0.624088 2:+79635752 MsG0280011104.01.T01:CDS
CGGGAAGCACTTGGTTAGTG+AGG 0.627824 2:+79635824 MsG0280011104.01.T01:CDS
AATGGATATGGTTAGTCACA+AGG 0.628549 2:-79637093 None:intergenic
ATGGATATGGTTAGTCACAA+GGG 0.630431 2:-79637092 None:intergenic
AGGCATGCAGTTCAACTCAA+GGG 0.634792 2:+79635488 MsG0280011104.01.T01:CDS
TGTTATTTACTCGCGAACGG+CGG 0.635708 2:-79635578 None:intergenic
AGGTGAAGGGAATAAGAGAA+GGG 0.642031 2:-79633195 None:intergenic
GCAACTCGAGCGATAGCTCA+CGG 0.642945 2:-79636657 None:intergenic
GAAGCAAGAGAATTCTACAA+TGG 0.657489 2:+79635513 MsG0280011104.01.T01:CDS
CCGTTTGTGCAACTGAATGG+GGG 0.675221 2:-79633236 None:intergenic
TGGTTAGTGCAGTGACTCCG+AGG 0.685287 2:+79633170 MsG0280011104.01.T01:five_prime_UTR
CATGCAGTTCAACTCAAGGG+AGG 0.700261 2:+79635491 MsG0280011104.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATGTTTATGATTATTA+TGG + Chr2:79634959-79634978 MsG0280011104.01.T01:intron 10.0%
!! ATTTAAATATTTATGATCAA+TGG - Chr2:79635083-79635102 None:intergenic 10.0%
!! TTAATGTTTATGATTATTAT+GGG + Chr2:79634960-79634979 MsG0280011104.01.T01:intron 10.0%
!!! TTTAATCATTTATTCTTTTT+TGG + Chr2:79634923-79634942 MsG0280011104.01.T01:intron 10.0%
!! AATATCTAATTACTAACATT+TGG - Chr2:79633723-79633742 None:intergenic 15.0%
!! AATATTTAAATTTCCAAACA+AGG + Chr2:79635092-79635111 MsG0280011104.01.T01:intron 15.0%
!! AAAGTTGGAATATTGAAAAA+TGG - Chr2:79633349-79633368 None:intergenic 20.0%
!! AAGTTGGAATATTGAAAAAT+GGG - Chr2:79633348-79633367 None:intergenic 20.0%
!! AATGTAATTCTATCAACATT+TGG + Chr2:79636925-79636944 MsG0280011104.01.T01:three_prime_UTR 20.0%
!! AATTAGGATAGTATTTATTG+CGG + Chr2:79634076-79634095 MsG0280011104.01.T01:intron 20.0%
!! AGATATTCACATATTCTTAA+TGG - Chr2:79634988-79635007 None:intergenic 20.0%
!! GACTATATTATGTATATTCT+TGG - Chr2:79636385-79636404 None:intergenic 20.0%
!! GATTGTATTTGTAATTGAAT+AGG + Chr2:79634784-79634803 MsG0280011104.01.T01:intron 20.0%
!! TATCAAAATACAGATTCTTA+TGG + Chr2:79636122-79636141 MsG0280011104.01.T01:intron 20.0%
!! TGTAAGTAATAACAAACAAA+GGG + Chr2:79633290-79633309 MsG0280011104.01.T01:intron 20.0%
!!! AACAATTTAGAATTATGTAC+AGG + Chr2:79635405-79635424 MsG0280011104.01.T01:CDS 20.0%
!!! AATAGGAAAGAATTTTTGTT+GGG + Chr2:79634801-79634820 MsG0280011104.01.T01:intron 20.0%
!!! AATCATTTATTCTTTTTTGG+TGG + Chr2:79634926-79634945 MsG0280011104.01.T01:intron 20.0%
!!! AATTAATTTGTTTCTTTGTC+CGG + Chr2:79633569-79633588 MsG0280011104.01.T01:intron 20.0%
!!! GAAACAAATTAATTCTGAAA+TGG - Chr2:79633563-79633582 None:intergenic 20.0%
!!! TTTTAGAATATCTTATCTCT+GGG + Chr2:79636148-79636167 MsG0280011104.01.T01:intron 20.0%
! AAATACAATTCTGAACGATT+TGG + Chr2:79636732-79636751 MsG0280011104.01.T01:CDS 25.0%
! ACATTATGAATAGCACTAAA+TGG - Chr2:79635054-79635073 None:intergenic 25.0%
! ATACATGTCCAAATTACTAA+AGG - Chr2:79634121-79634140 None:intergenic 25.0%
! ATCTTGGACATATTAGATTT+GGG + Chr2:79634896-79634915 MsG0280011104.01.T01:intron 25.0%
! ATTCGATTACAATTAATGCA+AGG - Chr2:79637123-79637142 None:intergenic 25.0%
! GAAACAGGAAAATAAAAAAG+AGG + Chr2:79635127-79635146 MsG0280011104.01.T01:intron 25.0%
! GAAGAAAAATCAGATTTAGA+TGG + Chr2:79636820-79636839 MsG0280011104.01.T01:CDS 25.0%
! GTGTAAGTAATAACAAACAA+AGG + Chr2:79633289-79633308 MsG0280011104.01.T01:intron 25.0%
! TAAACTATAAAGTGCACTAT+TGG - Chr2:79635859-79635878 None:intergenic 25.0%
! TATCTTGGACATATTAGATT+TGG + Chr2:79634895-79634914 MsG0280011104.01.T01:intron 25.0%
! TTTAGTAATTTGGACATGTA+TGG + Chr2:79634120-79634139 MsG0280011104.01.T01:intron 25.0%
! TTTCTGAACTCAATTGAAAT+GGG + Chr2:79633366-79633385 MsG0280011104.01.T01:intron 25.0%
!! AGGATTGTATTAACTCTTTT+AGG + Chr2:79636461-79636480 MsG0280011104.01.T01:intron 25.0%
!! ATATTGGGAAATTCATTTTC+TGG + Chr2:79637000-79637019 MsG0280011104.01.T01:three_prime_UTR 25.0%
!! ATCTTTTTGCTAATAGCTTA+TGG + Chr2:79635004-79635023 MsG0280011104.01.T01:intron 25.0%
!! GAATAGGAAAGAATTTTTGT+TGG + Chr2:79634800-79634819 MsG0280011104.01.T01:intron 25.0%
!! GAGTTCAATTATACATTTTC+CGG - Chr2:79633591-79633610 None:intergenic 25.0%
!! GGATTGTATTAACTCTTTTA+GGG + Chr2:79636462-79636481 MsG0280011104.01.T01:intron 25.0%
!!! CCTGTTTGAGATTTTTTTTA+GGG - Chr2:79636444-79636463 None:intergenic 25.0%
!!! CTGTTTGAGATTTTTTTTAG+GGG - Chr2:79636443-79636462 None:intergenic 25.0%
!!! CTTTTAGAATATCTTATCTC+TGG + Chr2:79636147-79636166 MsG0280011104.01.T01:intron 25.0%
!!! TCCTGTTTGAGATTTTTTTT+AGG - Chr2:79636445-79636464 None:intergenic 25.0%
!!! TGTTTGAGATTTTTTTTAGG+GGG - Chr2:79636442-79636461 None:intergenic 25.0%
!!! TTCTAGAATACCTTATCTAT+GGG + Chr2:79636051-79636070 MsG0280011104.01.T01:intron 25.0%
AAAAAGGAACAAACAGAACA+TGG - Chr2:79636581-79636600 None:intergenic 30.0%
AAAAATCAGATTTAGATGGC+AGG + Chr2:79636824-79636843 MsG0280011104.01.T01:CDS 30.0%
AAAAGACTTGTGATGTTGTA+TGG + Chr2:79633923-79633942 MsG0280011104.01.T01:intron 30.0%
AAATCAACAAGACAAGTTTG+AGG - Chr2:79636608-79636627 None:intergenic 30.0%
AAATGGTTTACCTATTATCC+AGG - Chr2:79633524-79633543 None:intergenic 30.0%
AAATTGATTGCATAACTTGG+AGG - Chr2:79633889-79633908 None:intergenic 30.0%
AATAAATCAAAATGTGCAGC+TGG - Chr2:79637150-79637169 None:intergenic 30.0%
AGGAGATTAACAAAAGAAAC+AGG + Chr2:79635112-79635131 MsG0280011104.01.T01:intron 30.0%
AGGTACATTTAGACCAATAT+TGG + Chr2:79634212-79634231 MsG0280011104.01.T01:intron 30.0%
AGTGGTCATATTAAAACTTC+AGG + Chr2:79636966-79636985 MsG0280011104.01.T01:three_prime_UTR 30.0%
ATTAAAAGTCCCATCTCAAT+CGG + Chr2:79636486-79636505 MsG0280011104.01.T01:intron 30.0%
CAAATTACAACAAAGGTGAA+GGG - Chr2:79633211-79633230 None:intergenic 30.0%
CAATTAATGCAAGGATACAA+TGG - Chr2:79637114-79637133 None:intergenic 30.0%
CATATCATATTCTTGCCTAT+CGG + Chr2:79634608-79634627 MsG0280011104.01.T01:intron 30.0%
CCCTAAAAAAAATCTCAAAC+AGG + Chr2:79636441-79636460 MsG0280011104.01.T01:intron 30.0%
CGAGTAAATAACAAGCTAAT+TGG + Chr2:79635588-79635607 MsG0280011104.01.T01:CDS 30.0%
CTTTCTGAACTCAATTGAAA+TGG + Chr2:79633365-79633384 MsG0280011104.01.T01:intron 30.0%
GAAAACTTCAAATTGCGAAT+AGG - Chr2:79636904-79636923 None:intergenic 30.0%
GAAAATTGTGAGTGAAAGTT+TGG - Chr2:79636176-79636195 None:intergenic 30.0%
GAACCAATATCATAGACTTA+AGG + Chr2:79634744-79634763 MsG0280011104.01.T01:intron 30.0%
GAAGAAGAAGATGAAGAAAA+TGG - Chr2:79633541-79633560 None:intergenic 30.0%
GAATTTCGCCTTTAGTAATT+TGG + Chr2:79634110-79634129 MsG0280011104.01.T01:intron 30.0%
GATGCATTAGCAAGAAAATT+AGG + Chr2:79634060-79634079 MsG0280011104.01.T01:intron 30.0%
GGTAAATTGATTGCATAACT+TGG - Chr2:79633892-79633911 None:intergenic 30.0%
GGTTGTTCAAATTACAACAA+AGG - Chr2:79633218-79633237 None:intergenic 30.0%
GTATAGTTCAGTTCTTTGTT+AGG + Chr2:79636546-79636565 MsG0280011104.01.T01:intron 30.0%
TAAAGTTGAGTAAGATAGCA+TGG - Chr2:79634287-79634306 None:intergenic 30.0%
TACATAACATGGATTTGAGT+GGG + Chr2:79633806-79633825 MsG0280011104.01.T01:intron 30.0%
TAGCAAAATACAGATTCTCA+TGG + Chr2:79636025-79636044 MsG0280011104.01.T01:intron 30.0%
TATGTATACCTGATCAAACT+TGG + Chr2:79635890-79635909 MsG0280011104.01.T01:intron 30.0%
TCAAATTACAACAAAGGTGA+AGG - Chr2:79633212-79633231 None:intergenic 30.0%
TCAACTTTATCTTGAGCTTT+GGG + Chr2:79634298-79634317 MsG0280011104.01.T01:intron 30.0%
TCGAAATAGACAGAAATGTT+TGG - Chr2:79634462-79634481 None:intergenic 30.0%
TGGAATATTGAAAAATGGGA+GGG - Chr2:79633344-79633363 None:intergenic 30.0%
TGTATGTTCCTTCACAAATT+TGG - Chr2:79635763-79635782 None:intergenic 30.0%
TTCAATTGAGTTCAGAAAGT+TGG - Chr2:79633364-79633383 None:intergenic 30.0%
TTCGCCTATCAAAAAACATT+TGG + Chr2:79634855-79634874 MsG0280011104.01.T01:intron 30.0%
TTGGAATATTGAAAAATGGG+AGG - Chr2:79633345-79633364 None:intergenic 30.0%
TTGTGTACTTCTGCTATAAT+AGG + Chr2:79635277-79635296 MsG0280011104.01.T01:intron 30.0%
TTTCAGCTGTTAGTAATTAC+TGG + Chr2:79635187-79635206 MsG0280011104.01.T01:intron 30.0%
TTTGCTAATAGCTTATGGAT+AGG + Chr2:79635009-79635028 MsG0280011104.01.T01:intron 30.0%
! ACAAGTTTGAGGTAGAAAAA+AGG - Chr2:79636597-79636616 None:intergenic 30.0%
! AGACAGAAATGTTTGGAATA+TGG - Chr2:79634455-79634474 None:intergenic 30.0%
! ATTCTTGGTGTAATATCGAT+AGG - Chr2:79636370-79636389 None:intergenic 30.0%
! CTTTTGTTAATCTCCTTGTT+TGG - Chr2:79635108-79635127 None:intergenic 30.0%
! TAGCAAGAGAATTTAAGACA+TGG - Chr2:79636322-79636341 None:intergenic 30.0%
! TAGTTTTCAACCTGGATAAT+AGG + Chr2:79633511-79633530 MsG0280011104.01.T01:five_prime_UTR 30.0%
! TATTATCCAGGTTGAAAACT+AGG - Chr2:79633512-79633531 None:intergenic 30.0%
! TTAGTGCTATTCATAATGTG+AGG + Chr2:79635055-79635074 MsG0280011104.01.T01:intron 30.0%
!! ATTTAGACCAATATTGGCTT+TGG + Chr2:79634218-79634237 MsG0280011104.01.T01:intron 30.0%
!! CTTCTAGAATACCTTATCTA+TGG + Chr2:79636050-79636069 MsG0280011104.01.T01:intron 30.0%
!!! AAATGTTTTTTGATAGGCGA+AGG - Chr2:79634856-79634875 None:intergenic 30.0%
!!! AGCACCAAATGTTTTTTGAT+AGG - Chr2:79634862-79634881 None:intergenic 30.0%
!!! TTGGAATATGGTTTTGACAA+GGG - Chr2:79634443-79634462 None:intergenic 30.0%
!!! TTTGGAATATGGTTTTGACA+AGG - Chr2:79634444-79634463 None:intergenic 30.0%
AATATTGAAAAATGGGAGGG+AGG - Chr2:79633341-79633360 None:intergenic 35.0%
ACAGTTCATCAGAAAACGTA+AGG - Chr2:79635234-79635253 None:intergenic 35.0%
ATATACGTAGAAGCTTCGAT+AGG + Chr2:79634153-79634172 MsG0280011104.01.T01:intron 35.0%
ATATTGAAAAATGGGAGGGA+GGG - Chr2:79633340-79633359 None:intergenic 35.0%
ATGCAAGGATACAATGGATA+TGG - Chr2:79637108-79637127 None:intergenic 35.0%
ATTTGGACATGTATGGAGAT+TGG + Chr2:79634127-79634146 MsG0280011104.01.T01:intron 35.0%
CAAATCCATGTTATGTAGGT+TGG - Chr2:79633803-79633822 None:intergenic 35.0%
CACTCAAATCCATGTTATGT+AGG - Chr2:79633807-79633826 None:intergenic 35.0%
CAGGCAGCTTATAGTATATT+GGG + Chr2:79636985-79637004 MsG0280011104.01.T01:three_prime_UTR 35.0%
CCAATATCATAGACTTAAGG+TGG + Chr2:79634747-79634766 MsG0280011104.01.T01:intron 35.0%
CCACCTTAAGTCTATGATAT+TGG - Chr2:79634750-79634769 None:intergenic 35.0%
CCTCAATCTCTCTGATATTT+CGG - Chr2:79636801-79636820 None:intergenic 35.0%
CTACATAACATGGATTTGAG+TGG + Chr2:79633805-79633824 MsG0280011104.01.T01:intron 35.0%
CTATTCGCTTTGCTTAAATC+TGG + Chr2:79633473-79633492 MsG0280011104.01.T01:five_prime_UTR 35.0%
CTCAACTTTATCTTGAGCTT+TGG + Chr2:79634297-79634316 MsG0280011104.01.T01:intron 35.0%
CTTCTGCTATAATAGGATGA+TGG + Chr2:79635284-79635303 MsG0280011104.01.T01:intron 35.0%
GAAAAATGTGAGTGAAGGTT+TGG - Chr2:79636079-79636098 None:intergenic 35.0%
GAAGCAAGAGAATTCTACAA+TGG + Chr2:79635513-79635532 MsG0280011104.01.T01:CDS 35.0%
GAATGAACCAAAGCCAATAT+TGG - Chr2:79634228-79634247 None:intergenic 35.0%
GACACATTAGAACCATTCAT+AGG + Chr2:79635468-79635487 MsG0280011104.01.T01:CDS 35.0%
GAGAATCTCACAATTGTTAG+AGG + Chr2:79634192-79634211 MsG0280011104.01.T01:intron 35.0%
GGACAGGACAAAATAGTATT+AGG + Chr2:79634033-79634052 MsG0280011104.01.T01:intron 35.0%
GTTGTATGGAAGTGAGTATT+AGG + Chr2:79633937-79633956 MsG0280011104.01.T01:intron 35.0%
TAAAGAGTCATGTCTATCAC+AGG - Chr2:79634555-79634574 None:intergenic 35.0%
TAGCTTATGGATAGGATGAT+TGG + Chr2:79635017-79635036 MsG0280011104.01.T01:intron 35.0%
TATACGTAGAAGCTTCGATA+GGG + Chr2:79634154-79634173 MsG0280011104.01.T01:intron 35.0%
TCAAACCAACCTACATAACA+TGG + Chr2:79633795-79633814 MsG0280011104.01.T01:intron 35.0%
TCAGGCAGCTTATAGTATAT+TGG + Chr2:79636984-79637003 MsG0280011104.01.T01:three_prime_UTR 35.0%
TTAACATACTACATGCTTGC+AGG + Chr2:79633445-79633464 MsG0280011104.01.T01:intron 35.0%
TTACATGCAGATGTTGGATT+AGG + Chr2:79636509-79636528 MsG0280011104.01.T01:intron 35.0%
TTCCACCTAAGATAGAATGA+GGG + Chr2:79636344-79636363 MsG0280011104.01.T01:intron 35.0%
TTTCCACCTAAGATAGAATG+AGG + Chr2:79636343-79636362 MsG0280011104.01.T01:intron 35.0%
! AATGGATATGGTTAGTCACA+AGG - Chr2:79637096-79637115 None:intergenic 35.0%
! ACGAAAGGCAAAAGTACAAA+AGG + Chr2:79636683-79636702 MsG0280011104.01.T01:CDS 35.0%
! ATGGATATGGTTAGTCACAA+GGG - Chr2:79637095-79637114 None:intergenic 35.0%
! GATTTTGTCTGCTCAAAAGA+AGG + Chr2:79635615-79635634 MsG0280011104.01.T01:CDS 35.0%
! TTTCTGGTGTGTATCATGTT+CGG + Chr2:79637016-79637035 MsG0280011104.01.T01:three_prime_UTR 35.0%
! TTTTGATAGGCGAAGGTTAA+GGG - Chr2:79634849-79634868 None:intergenic 35.0%
! TTTTTGATAGGCGAAGGTTA+AGG - Chr2:79634850-79634869 None:intergenic 35.0%
!! ATCAACATTTGGCTTGAAGT+TGG + Chr2:79636936-79636955 MsG0280011104.01.T01:three_prime_UTR 35.0%
!! CAAAAAACATTTGGTGCTGT+TGG + Chr2:79634864-79634883 MsG0280011104.01.T01:intron 35.0%
!! CAAGTCTTTTTAACTACACG+CGG - Chr2:79633913-79633932 None:intergenic 35.0%
!! CTGTTGGTTCTGTATTATCT+TGG + Chr2:79634880-79634899 MsG0280011104.01.T01:intron 35.0%
!! GTCAGTCTCACTTTTAAATC+TGG - Chr2:79635916-79635935 None:intergenic 35.0%
!!! TTGAGATTTTTTTTAGGGGG+TGG - Chr2:79636439-79636458 None:intergenic 35.0%
AAATCTGGCCAAGTTTGATC+AGG - Chr2:79635901-79635920 None:intergenic 40.0%
AAGATGAAGTGTAGAAGCTC+CGG - Chr2:79633265-79633284 None:intergenic 40.0%
AAGGTGAAGGGAATAAGAGA+AGG - Chr2:79633199-79633218 None:intergenic 40.0%
AAGGTTGTCAAGCCATGATA+AGG + Chr2:79635703-79635722 MsG0280011104.01.T01:CDS 40.0%
AAGTATCTCACCAGAATGTC+TGG - Chr2:79636878-79636897 None:intergenic 40.0%
AATCGGTTACATGCAGATGT+TGG + Chr2:79636503-79636522 MsG0280011104.01.T01:intron 40.0%
AATTCTACAATGGCCATGGT+AGG + Chr2:79635523-79635542 MsG0280011104.01.T01:CDS 40.0%
ACAATGAGTCATTGAAAGCG+CGG + Chr2:79634012-79634031 MsG0280011104.01.T01:intron 40.0%
AGACATTCTGGTGAGATACT+TGG + Chr2:79636877-79636896 MsG0280011104.01.T01:three_prime_UTR 40.0%
AGAGAATTCTACAATGGCCA+TGG + Chr2:79635519-79635538 MsG0280011104.01.T01:CDS 40.0%
AGATTGACAACAGTATCAGC+AGG + Chr2:79635971-79635990 MsG0280011104.01.T01:intron 40.0%
AGGTGAAGGGAATAAGAGAA+GGG - Chr2:79633198-79633217 None:intergenic 40.0%
ATAACATGGATTTGAGTGGG+TGG + Chr2:79633809-79633828 MsG0280011104.01.T01:intron 40.0%
ATAGGCCCTCATTCTATCTT+AGG - Chr2:79636352-79636371 None:intergenic 40.0%
ATCAGTGAGGGACTTAGAAA+AGG - Chr2:79636219-79636238 None:intergenic 40.0%
CACTCTCCAACAATGGTATT+CGG + Chr2:79634715-79634734 MsG0280011104.01.T01:intron 40.0%
CCGAAATATCAGAGAGATTG+AGG + Chr2:79636798-79636817 MsG0280011104.01.T01:CDS 40.0%
CGACGCATTCATTGTTGAAA+TGG + Chr2:79633392-79633411 MsG0280011104.01.T01:intron 40.0%
CGTGGTCAGAAAAAGTCAAA+GGG - Chr2:79634499-79634518 None:intergenic 40.0%
CTGGCAACAATGGAATATAC+TGG - Chr2:79636859-79636878 None:intergenic 40.0%
GAAGGAGTTAATTGACCGAT+AGG - Chr2:79634626-79634645 None:intergenic 40.0%
GGAGGATAGGATTTACAGTA+CGG + Chr2:79635544-79635563 MsG0280011104.01.T01:CDS 40.0%
GGATGCACTAGTCAATCAAT+TGG + Chr2:79634822-79634841 MsG0280011104.01.T01:intron 40.0%
GGTTGTCACCAAATTTGTGA+AGG + Chr2:79635752-79635771 MsG0280011104.01.T01:CDS 40.0%
GTCAATCTAATATCAGCAGC+AGG - Chr2:79635959-79635978 None:intergenic 40.0%
GTGGTCAGAAAAAGTCAAAG+GGG - Chr2:79634498-79634517 None:intergenic 40.0%
TAAATCCTATCCTCCTACCA+TGG - Chr2:79635539-79635558 None:intergenic 40.0%
TACCATCTGAATCAAATCCC+TGG - Chr2:79635323-79635342 None:intergenic 40.0%
TCAGTGAGGGACTTAGAAAA+GGG - Chr2:79636218-79636237 None:intergenic 40.0%
TGATGCAAATGGAAGGGAAA+GGG - Chr2:79636252-79636271 None:intergenic 40.0%
TGCATGTAACCGATTGAGAT+GGG - Chr2:79636498-79636517 None:intergenic 40.0%
TTATCTAGAAGCTGTGGTGA+AGG - Chr2:79634644-79634663 None:intergenic 40.0%
TTCAACAAGAGCAGCATGTT+AGG - Chr2:79637064-79637083 None:intergenic 40.0%
TTCTGGTGTGTATCATGTTC+GGG + Chr2:79637017-79637036 MsG0280011104.01.T01:three_prime_UTR 40.0%
TTGAACTGCATGCCTATGAA+TGG - Chr2:79635483-79635502 None:intergenic 40.0%
TTGTCAAGCCATGATAAGGT+TGG + Chr2:79635707-79635726 MsG0280011104.01.T01:CDS 40.0%
! AGGTTTGGAACCCATAGATA+AGG - Chr2:79636064-79636083 None:intergenic 40.0%
! CGTTTTCTGATGAACTGTGA+AGG + Chr2:79635236-79635255 MsG0280011104.01.T01:intron 40.0%
! GGATTTTGTTGGATCAGTGA+GGG - Chr2:79636231-79636250 None:intergenic 40.0%
! TTCGAGTTCATCATGTAGAG+CGG - Chr2:79636102-79636121 None:intergenic 40.0%
!! ACATTTGGCTTGAAGTTGGT+TGG + Chr2:79636940-79636959 MsG0280011104.01.T01:three_prime_UTR 40.0%
!! ATGTAGGTTGGTTTGAGCTA+GGG - Chr2:79633791-79633810 None:intergenic 40.0%
!! CATGATAAGGTTGGCTTTAC+GGG + Chr2:79635716-79635735 MsG0280011104.01.T01:CDS 40.0%
!! CCATGATAAGGTTGGCTTTA+CGG + Chr2:79635715-79635734 MsG0280011104.01.T01:CDS 40.0%
!! GCTTGTTATTTACTCGCGAA+CGG - Chr2:79635584-79635603 None:intergenic 40.0%
!! GTCTTGTTGATTTGTGTCAC+AGG + Chr2:79636615-79636634 MsG0280011104.01.T01:intron 40.0%
!! GTTGAGCTTCTGAGTTTTGA+TGG - Chr2:79634387-79634406 None:intergenic 40.0%
!! TAGGCTGCAAAGAGTTGATA+TGG + Chr2:79633956-79633975 MsG0280011104.01.T01:intron 40.0%
!! TATGTAGGTTGGTTTGAGCT+AGG - Chr2:79633792-79633811 None:intergenic 40.0%
!! TCTTCTCCTAGTTTTCAACC+TGG + Chr2:79633503-79633522 MsG0280011104.01.T01:five_prime_UTR 40.0%
!!! AGATTTTTTTTAGGGGGTGG+AGG - Chr2:79636436-79636455 None:intergenic 40.0%
AACGACGTGATGCAAATGGA+AGG - Chr2:79636259-79636278 None:intergenic 45.0%
AACGTGCCGAATACCATTGT+TGG - Chr2:79634724-79634743 None:intergenic 45.0%
AATATCAGCAGCAGGAGAAG+AGG - Chr2:79635951-79635970 None:intergenic 45.0%
AATCAAATCCCTGGCCAGAT+TGG - Chr2:79635314-79635333 None:intergenic 45.0%
AATGTGTCCGAATCTGCTAC+AGG - Chr2:79635456-79635475 None:intergenic 45.0%
ACACCTCAAAGCCTCTGATT+AGG + Chr2:79634339-79634358 MsG0280011104.01.T01:intron 45.0%
ACCAGAATGTCTGGCAACAA+TGG - Chr2:79636869-79636888 None:intergenic 45.0%
ACCGTTTGTGCAACTGAATG+GGG - Chr2:79633240-79633259 None:intergenic 45.0%
ACGACGTGATGCAAATGGAA+GGG - Chr2:79636258-79636277 None:intergenic 45.0%
AGAGTCATGTCTATCACAGG+TGG - Chr2:79634552-79634571 None:intergenic 45.0%
AGCGGGAAAAATGTGAGTGA+AGG - Chr2:79636084-79636103 None:intergenic 45.0%
AGCTGTCAGAAACACTGTCA+CGG - Chr2:79634680-79634699 None:intergenic 45.0%
AGGCATGCAGTTCAACTCAA+GGG + Chr2:79635488-79635507 MsG0280011104.01.T01:CDS 45.0%
ATGGCAGCATGAGACACATT+GGG - Chr2:79636303-79636322 None:intergenic 45.0%
ATTTGAGTGGGTGGATAGAG+TGG + Chr2:79633818-79633837 MsG0280011104.01.T01:intron 45.0%
CCGTAAAGCCAACCTTATCA+TGG - Chr2:79635718-79635737 None:intergenic 45.0%
CGAACAACCTGTAGCAGATT+CGG + Chr2:79635446-79635465 MsG0280011104.01.T01:CDS 45.0%
CGTGTCTTATCTAGAAGCTG+TGG - Chr2:79634650-79634669 None:intergenic 45.0%
CTGCATGTAACCGATTGAGA+TGG - Chr2:79636499-79636518 None:intergenic 45.0%
GACCGTTTGTGCAACTGAAT+GGG - Chr2:79633241-79633260 None:intergenic 45.0%
GATAGGGAGGGTAGATCAAA+TGG + Chr2:79634170-79634189 MsG0280011104.01.T01:intron 45.0%
GATTAGGAGATCCAACACCT+AGG + Chr2:79634355-79634374 MsG0280011104.01.T01:intron 45.0%
GCGTGGTCAGAAAAAGTCAA+AGG - Chr2:79634500-79634519 None:intergenic 45.0%
GGAATAAGAGAAGGGTTCCT+CGG - Chr2:79633190-79633209 None:intergenic 45.0%
GGTATGGAGTAGTTCTTCCA+TGG + Chr2:79633150-79633169 MsG0280011104.01.T01:five_prime_UTR 45.0%
GTGACACGTTGAACCAATGA+GGG + Chr2:79634259-79634278 MsG0280011104.01.T01:intron 45.0%
GTGATGCAAATGGAAGGGAA+AGG - Chr2:79636253-79636272 None:intergenic 45.0%
GTGTTGGATCTCCTAATCAG+AGG - Chr2:79634353-79634372 None:intergenic 45.0%
TAGGCATGCAGTTCAACTCA+AGG + Chr2:79635487-79635506 MsG0280011104.01.T01:CDS 45.0%
TCATGGCTTGACAACCTTCT+CGG - Chr2:79635701-79635720 None:intergenic 45.0%
TCCATTGTTGCCAGACATTC+TGG + Chr2:79636865-79636884 MsG0280011104.01.T01:three_prime_UTR 45.0%
TCCATTTGCATCACGTCGTT+AGG + Chr2:79636259-79636278 MsG0280011104.01.T01:intron 45.0%
TCCTAACGACGTGATGCAAA+TGG - Chr2:79636263-79636282 None:intergenic 45.0%
TCGAGTTCATCATGTAGAGC+GGG - Chr2:79636101-79636120 None:intergenic 45.0%
TCTCCTAATCAGAGGCTTTG+AGG - Chr2:79634345-79634364 None:intergenic 45.0%
TGACCGTTTGTGCAACTGAA+TGG - Chr2:79633242-79633261 None:intergenic 45.0%
TGATTGCATAACTTGGAGGC+TGG - Chr2:79633885-79633904 None:intergenic 45.0%
TGTCACAGGACGAGAAAGAT+AGG + Chr2:79636629-79636648 MsG0280011104.01.T01:intron 45.0%
TTACTATCCGATTCCGCTAG+CGG - Chr2:79634418-79634437 None:intergenic 45.0%
TTTACGGGATGAAGGGAAGT+GGG + Chr2:79635731-79635750 MsG0280011104.01.T01:CDS 45.0%
! AAAAGGGTGTGTGGAAAGTG+AGG - Chr2:79636202-79636221 None:intergenic 45.0%
! AGGACTAGAGGTAGCTTTTC+AGG - Chr2:79636416-79636435 None:intergenic 45.0%
! CTGGGTTTCTCTAGTTGGTA+TGG + Chr2:79633134-79633153 MsG0280011104.01.T01:five_prime_UTR 45.0%
! CTTGAAGTTGGTTGGTGTAG+TGG + Chr2:79636948-79636967 MsG0280011104.01.T01:three_prime_UTR 45.0%
! CTTTTTCTGACCACGCGAAT+GGG + Chr2:79634504-79634523 MsG0280011104.01.T01:intron 45.0%
! GGAAGGGAAAGGGATTTTGT+TGG - Chr2:79636242-79636261 None:intergenic 45.0%
! GGGATTTTGTTGGATCAGTG+AGG - Chr2:79636232-79636251 None:intergenic 45.0%
! TGTTATTTACTCGCGAACGG+CGG - Chr2:79635581-79635600 None:intergenic 45.0%
! TTGGTTTGAGCTAGGGGATA+AGG - Chr2:79633784-79633803 None:intergenic 45.0%
! TTTTTCTGACCACGCGAATG+GGG + Chr2:79634505-79634524 MsG0280011104.01.T01:intron 45.0%
!! AATCAGAGGCTTTGAGGTGT+AGG - Chr2:79634339-79634358 None:intergenic 45.0%
!! ACTTTTTCTGACCACGCGAA+TGG + Chr2:79634503-79634522 MsG0280011104.01.T01:intron 45.0%
!! AGGATGATGGATCACCAATC+TGG + Chr2:79635297-79635316 MsG0280011104.01.T01:intron 45.0%
!! AGTTTTGATGGCACTCACCT+AGG - Chr2:79634375-79634394 None:intergenic 45.0%
!! GCTTTGAGGTGTAGGAGAAA+TGG - Chr2:79634331-79634350 None:intergenic 45.0%
!! TGCTCACTCACTTGCTGTAT+TGG - Chr2:79637174-79637193 None:intergenic 45.0%
!! TGTAGGTTGGTTTGAGCTAG+GGG - Chr2:79633790-79633809 None:intergenic 45.0%
AATGGCCATGGTAGGAGGAT+AGG + Chr2:79635531-79635550 MsG0280011104.01.T01:CDS 50.0%
ACGTAGAAGCTTCGATAGGG+AGG + Chr2:79634157-79634176 MsG0280011104.01.T01:intron 50.0%
AGATAGCATGGAGCCCTCAT+TGG - Chr2:79634275-79634294 None:intergenic 50.0%
AGGCAGACACTCTCCAACAA+TGG + Chr2:79634708-79634727 MsG0280011104.01.T01:intron 50.0%
ATGGATCACCAATCTGGCCA+GGG + Chr2:79635303-79635322 MsG0280011104.01.T01:CDS 50.0%
CATGCAGTTCAACTCAAGGG+AGG + Chr2:79635491-79635510 MsG0280011104.01.T01:CDS 50.0%
CATGGCAGCATGAGACACAT+TGG - Chr2:79636304-79636323 None:intergenic 50.0%
CATGGCTTGACAACCTTCTC+GGG - Chr2:79635700-79635719 None:intergenic 50.0%
CCCCCATTCAGTTGCACAAA+CGG + Chr2:79633236-79633255 MsG0280011104.01.T01:five_prime_UTR 50.0%
CCGTTTGTGCAACTGAATGG+GGG - Chr2:79633239-79633258 None:intergenic 50.0%
CGTAGAAGCTTCGATAGGGA+GGG + Chr2:79634158-79634177 MsG0280011104.01.T01:intron 50.0%
CGTGACACGTTGAACCAATG+AGG + Chr2:79634258-79634277 MsG0280011104.01.T01:intron 50.0%
CTCACTAACCAAGTGCTTCC+CGG - Chr2:79635826-79635845 None:intergenic 50.0%
CTTTACGGGATGAAGGGAAG+TGG + Chr2:79635730-79635749 MsG0280011104.01.T01:CDS 50.0%
GGCCAGGGATTTGATTCAGA+TGG + Chr2:79635318-79635337 MsG0280011104.01.T01:CDS 50.0%
GGCCCTCATTCTATCTTAGG+TGG - Chr2:79636349-79636368 None:intergenic 50.0%
TCAGTTGCACAAACGGTCAC+CGG + Chr2:79633243-79633262 MsG0280011104.01.T01:five_prime_UTR 50.0%
TCTACAATGGCCATGGTAGG+AGG + Chr2:79635526-79635545 MsG0280011104.01.T01:CDS 50.0%
TGAGCTAGGGGATAAGGAGT+TGG - Chr2:79633778-79633797 None:intergenic 50.0%
TGAGTCCCAGTGAAGTTCCA+TGG + Chr2:79635793-79635812 MsG0280011104.01.T01:CDS 50.0%
TTTCTGACAGCTCCGCACTT+AGG + Chr2:79634688-79634707 MsG0280011104.01.T01:intron 50.0%
! GGGACTTAGAAAAGGGTGTG+TGG - Chr2:79636211-79636230 None:intergenic 50.0%
!! AGGTTGGCTTTACGGGATGA+AGG + Chr2:79635723-79635742 MsG0280011104.01.T01:CDS 50.0%
!! GGTTGGCTTTACGGGATGAA+GGG + Chr2:79635724-79635743 MsG0280011104.01.T01:CDS 50.0%
AAGTTCCATGGCGAGGATCC+GGG + Chr2:79635805-79635824 MsG0280011104.01.T01:CDS 55.0%
CCTCGCCATGGAACTTCACT+GGG - Chr2:79635801-79635820 None:intergenic 55.0%
CGGAGTCACTGCACTAACCA+TGG - Chr2:79633170-79633189 None:intergenic 55.0%
GAAGTTCCATGGCGAGGATC+CGG + Chr2:79635804-79635823 MsG0280011104.01.T01:CDS 55.0%
GATGGATCACCAATCTGGCC+AGG + Chr2:79635302-79635321 MsG0280011104.01.T01:CDS 55.0%
GATGGCACTCACCTAGGTGT+TGG - Chr2:79634369-79634388 None:intergenic 55.0%
GCAACTCGAGCGATAGCTCA+CGG - Chr2:79636660-79636679 None:intergenic 55.0%
GCTAGGGGATAAGGAGTTGG+AGG - Chr2:79633775-79633794 None:intergenic 55.0%
GGAGGTCGTCAGCTCAAACT+TGG - Chr2:79633757-79633776 None:intergenic 55.0%
TCCTCGCCATGGAACTTCAC+TGG - Chr2:79635802-79635821 None:intergenic 55.0%
TGGTTAGTGCAGTGACTCCG+AGG + Chr2:79633170-79633189 MsG0280011104.01.T01:five_prime_UTR 55.0%
TTACTCGCGAACGGCGGTTA+TGG - Chr2:79635575-79635594 None:intergenic 55.0%
TTTAGGGGGTGGAGGACTAG+AGG - Chr2:79636428-79636447 None:intergenic 55.0%
! CGCTCGAGTTGCACAACGAA+AGG + Chr2:79636668-79636687 MsG0280011104.01.T01:CDS 55.0%
! GAGTCATTGAAAGCGCGGAC+AGG + Chr2:79634017-79634036 MsG0280011104.01.T01:intron 55.0%
!! CGGGAAGCACTTGGTTAGTG+AGG + Chr2:79635824-79635843 MsG0280011104.01.T01:CDS 55.0%
!! GGAGAGTGTCTGCCTAAGTG+CGG - Chr2:79634703-79634722 None:intergenic 55.0%
CCCAGTGAAGTTCCATGGCG+AGG + Chr2:79635798-79635817 MsG0280011104.01.T01:CDS 60.0%
CTATCCGATTCCGCTAGCGG+TGG - Chr2:79634415-79634434 None:intergenic 60.0%
GGCTTGACAACCTTCTCGGG+TGG - Chr2:79635697-79635716 None:intergenic 60.0%
GGGTGTGTGGAAAGTGAGGC+TGG - Chr2:79636198-79636217 None:intergenic 60.0%
TCAACCTGCTCCACCGCTAG+CGG + Chr2:79634402-79634421 MsG0280011104.01.T01:intron 60.0%
TGACAACCTTCTCGGGTGGC+TGG - Chr2:79635693-79635712 None:intergenic 60.0%
TGCTCCACCGCTAGCGGAAT+CGG + Chr2:79634408-79634427 MsG0280011104.01.T01:intron 60.0%
TTCTGACCACGCGAATGGGG+TGG + Chr2:79634508-79634527 MsG0280011104.01.T01:intron 60.0%
CAACCTTCTCGGGTGGCTGG+TGG - Chr2:79635690-79635709 None:intergenic 65.0%
CACAGTCCACCCCATTCGCG+TGG - Chr2:79634517-79634536 None:intergenic 65.0%
GATTCCGCTAGCGGTGGAGC+AGG - Chr2:79634409-79634428 None:intergenic 65.0%
TGCTTCCCGGATCCTCGCCA+TGG - Chr2:79635813-79635832 None:intergenic 65.0%
!! CACGCGAATGGGGTGGACTG+TGG + Chr2:79634515-79634534 MsG0280011104.01.T01:intron 65.0%
!! GCGAGGATCCGGGAAGCACT+TGG + Chr2:79635815-79635834 MsG0280011104.01.T01:CDS 65.0%
CCTCCACCAGCCACCCGAGA+AGG + Chr2:79635684-79635703 MsG0280011104.01.T01:CDS 70.0%
CCTTCTCGGGTGGCTGGTGG+AGG - Chr2:79635687-79635706 None:intergenic 70.0%
CTCGGGTGGCTGGTGGAGGA+GGG - Chr2:79635683-79635702 None:intergenic 70.0%
TCTCGGGTGGCTGGTGGAGG+AGG - Chr2:79635684-79635703 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79633130 79637202 79633130 ID=MsG0280011104.01;Name=MsG0280011104.01
Chr2 mRNA 79633130 79637202 79633130 ID=MsG0280011104.01.T01;Parent=MsG0280011104.01;Name=MsG0280011104.01.T01;_AED=0.36;_eAED=0.36;_QI=228|1|1|1|0.33|0.25|4|353|252
Chr2 exon 79633130 79633290 79633130 ID=MsG0280011104.01.T01:exon:17554;Parent=MsG0280011104.01.T01
Chr2 exon 79633467 79633532 79633467 ID=MsG0280011104.01.T01:exon:17555;Parent=MsG0280011104.01.T01
Chr2 exon 79635299 79635845 79635299 ID=MsG0280011104.01.T01:exon:17556;Parent=MsG0280011104.01.T01
Chr2 exon 79636637 79637202 79636637 ID=MsG0280011104.01.T01:exon:17557;Parent=MsG0280011104.01.T01
Chr2 five_prime_UTR 79633130 79633290 79633130 ID=MsG0280011104.01.T01:five_prime_utr;Parent=MsG0280011104.01.T01
Chr2 five_prime_UTR 79633467 79633532 79633467 ID=MsG0280011104.01.T01:five_prime_utr;Parent=MsG0280011104.01.T01
Chr2 five_prime_UTR 79635299 79635299 79635299 ID=MsG0280011104.01.T01:five_prime_utr;Parent=MsG0280011104.01.T01
Chr2 CDS 79635300 79635845 79635300 ID=MsG0280011104.01.T01:cds;Parent=MsG0280011104.01.T01
Chr2 CDS 79636637 79636849 79636637 ID=MsG0280011104.01.T01:cds;Parent=MsG0280011104.01.T01
Chr2 three_prime_UTR 79636850 79637202 79636850 ID=MsG0280011104.01.T01:three_prime_utr;Parent=MsG0280011104.01.T01
Gene Sequence

>MsG0280011104.01.T01

ATGATGGATCACCAATCTGGCCAGGGATTTGATTCAGATGGTAGTGACTTTGATGTGCTAGCAGAAATCAGTGAGAAACATGAGAAAGTAGAAGATGAGTTTACAAACAATTTAGAATTATGTACAGGCGAAGATGAAAAGTTTGTCGAACAACCTGTAGCAGATTCGGACACATTAGAACCATTCATAGGCATGCAGTTCAACTCAAGGGAGGAAGCAAGAGAATTCTACAATGGCCATGGTAGGAGGATAGGATTTACAGTACGGATACACCATAACCGCCGTTCGCGAGTAAATAACAAGCTAATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGTTTTCGTGCAAAAAAGTATGTGCACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAAGCCATGATAAGGTTGGCTTTACGGGATGAAGGGAAGTGGGTTGTCACCAAATTTGTGAAGGAACATACACATAAACTGATGAGTCCCAGTGAAGTTCCATGGCGAGGATCCGGGAAGCACTTGGTTAGTGAGGACGAGAAAGATAGGAGAATCCGTGAGCTATCGCTCGAGTTGCACAACGAAAGGCAAAAGTACAAAAGGCGTTGTGCAGCATATGAAGAACAGTTAAATACAATTCTGAACGATTTGGAAAAGCACACAGAACATATCTCTAAAAAAGTTGCTGATGTAGTCCGAAATATCAGAGAGATTGAGGAAGAAAAATCAGATTTAGATGGCAGGTAA
Protein sequence

>MsG0280011104.01.T01

MMDHQSGQGFDSDGSDFDVLAEISEKHEKVEDEFTNNLELCTGEDEKFVEQPVADSDTLEPFIGMQFNSREEAREFYNGHGRRIGFTVRIHHNRRSRVNNKLIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPSEVPWRGSGKHLVSEDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVRNIREIEEEKSDLDGR*