AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011529.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011529.01.T01 MTR_3g006140 92.661 218 13 1 91 305 10 227 1.05e-147 420
MsG0380011529.01.T01 MTR_3g006010 62.422 322 103 3 2 305 1 322 4.85e-133 386
MsG0380011529.01.T01 MTR_3g006120 76.733 202 47 0 104 305 4 205 1.39e-111 327
MsG0380011529.01.T01 MTR_3g006100 74.257 202 52 0 104 305 4 205 2.58e-107 316
MsG0380011529.01.T01 MTR_3g006180 76.562 192 45 0 114 305 1 192 4.54e-104 308
MsG0380011529.01.T01 MTR_4g133490 75.248 202 50 0 104 305 2 203 5.69e-100 297
MsG0380011529.01.T01 MTR_6g092140 53.287 289 113 5 23 304 25 298 3.94e-92 281
MsG0380011529.01.T01 MTR_6g091830 53.287 289 113 5 23 304 25 298 4.48e-92 281
MsG0380011529.01.T01 MTR_3g068220 69.458 203 59 1 102 304 2 201 1.78e-88 268
MsG0380011529.01.T01 MTR_7g083950 50.859 291 111 6 16 304 24 284 1.83e-80 250
MsG0380011529.01.T01 MTR_4g133320 76.687 163 38 0 143 305 1 163 8.10e-77 237
MsG0380011529.01.T01 MTR_7g070100 57.214 201 85 1 105 305 5 204 1.11e-70 223
MsG0380011529.01.T01 MTR_3g045700 56.098 205 86 3 102 305 2 203 1.29e-65 209
MsG0380011529.01.T01 MTR_6g088340 43.448 290 112 7 23 304 31 276 3.44e-61 201
MsG0380011529.01.T01 MTR_3g085910 65.333 150 50 2 103 252 2 149 1.30e-59 192
MsG0380011529.01.T01 MTR_1g100280 48.611 216 79 4 92 304 1 187 2.06e-51 172
MsG0380011529.01.T01 MTR_1g089085 55.921 152 61 4 94 243 28 175 6.04e-47 156
MsG0380011529.01.T01 MTR_6g011110 64.516 124 41 1 182 305 1 121 2.03e-46 158
MsG0380011529.01.T01 MTR_1g012330 64.463 121 43 0 182 302 1 121 5.13e-43 148
MsG0380011529.01.T01 MTR_1g109340 71.000 100 29 0 205 304 108 207 8.20e-39 140
MsG0380011529.01.T01 MTR_1g109340 34.483 145 48 5 1 138 1 105 8.72e-12 65.5
MsG0380011529.01.T01 MTR_1g106050 63.000 100 37 0 104 203 2 101 1.32e-38 133
MsG0380011529.01.T01 MTR_1g109090 51.908 131 62 1 100 229 12 142 1.78e-36 128
MsG0380011529.01.T01 MTR_3g006065 93.939 66 4 0 2 67 1 66 5.13e-35 125
MsG0380011529.01.T01 MTR_3g086480 60.345 116 42 2 190 305 3 114 3.05e-34 125
MsG0380011529.01.T01 MTR_3g006150 92.424 66 5 0 2 67 1 66 1.05e-33 121
MsG0380011529.01.T01 MTR_0128s0040 46.269 134 70 2 133 266 3 134 1.09e-29 110
MsG0380011529.01.T01 MTR_3g006185 64.286 70 21 1 2 67 1 70 1.72e-19 84.3
MsG0380011529.01.T01 MTR_3g006125 65.714 70 20 1 2 67 82 151 1.94e-19 86.3
MsG0380011529.01.T01 MTR_3g006105 64.286 70 21 1 2 67 1 70 2.75e-19 84.0
MsG0380011529.01.T01 MTR_5g036670 55.882 68 27 1 3 67 37 104 3.32e-13 70.5
MsG0380011529.01.T01 MTR_8g062700 54.412 68 28 1 3 67 36 103 1.07e-12 68.9
MsG0380011529.01.T01 MTR_8g062700 54.412 68 28 1 3 67 36 103 1.11e-12 68.9
MsG0380011529.01.T01 MTR_1g104940 52.381 63 27 1 8 67 13 75 3.13e-11 60.1
MsG0380011529.01.T01 MTR_6g023220 25.773 194 136 3 113 304 22 209 3.72e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011529.01.T01 AT1G70060 52.941 68 29 1 3 67 8 75 4.82e-12 67.0
MsG0380011529.01.T01 AT1G70060 52.941 68 29 1 3 67 8 75 4.82e-12 67.0
MsG0380011529.01.T01 AT1G24190 50.000 68 31 1 3 67 8 75 1.44e-11 65.9
MsG0380011529.01.T01 AT1G24190 50.000 68 31 1 3 67 8 75 1.60e-11 65.5
MsG0380011529.01.T01 AT1G24190 50.000 68 31 1 3 67 8 75 1.63e-11 65.5
MsG0380011529.01.T01 AT1G59890 36.364 121 54 2 9 126 45 145 5.74e-11 63.9
MsG0380011529.01.T01 AT1G59890 36.364 121 54 2 9 126 45 145 6.00e-11 63.9
MsG0380011529.01.T01 AT1G59890 36.364 121 54 2 9 126 45 145 6.16e-11 63.9
MsG0380011529.01.T01 AT1G59890 36.364 121 54 2 9 126 45 145 6.22e-11 63.9
MsG0380011529.01.T01 AT4G12020 47.059 68 34 1 2 67 301 368 8.92e-11 63.2
MsG0380011529.01.T01 AT4G12020 47.059 68 34 1 2 67 301 368 9.62e-11 63.2
MsG0380011529.01.T01 AT4G12020 47.059 68 34 1 2 67 301 368 9.83e-11 63.2
MsG0380011529.01.T01 AT4G12020 47.059 68 34 1 2 67 301 368 9.83e-11 63.2
MsG0380011529.01.T01 AT4G12020 47.059 68 34 1 2 67 234 301 9.84e-11 63.2
MsG0380011529.01.T01 AT4G12020 47.059 68 34 1 2 67 301 368 9.89e-11 63.2

Find 43 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAGAAAACTTTACTTTAA+AGG 0.129713 3:+983802 None:intergenic
GTCTACCAATCTCGAAATTT+TGG 0.131418 3:-983692 MsG0380011529.01.T01:CDS
GGGAATTTCATAAAATTTAT+TGG 0.195974 3:-984063 MsG0380011529.01.T01:CDS
TACCATGTCTTACTTGCTTT+TGG 0.226717 3:-983773 MsG0380011529.01.T01:CDS
AGAGTGTATGAGTTGTTTAA+AGG 0.253520 3:-986151 MsG0380011529.01.T01:CDS
AATTTATTGGAGAAATTTCT+TGG 0.271876 3:-984050 MsG0380011529.01.T01:CDS
ATCTCAAAATTAAATCTTCA+TGG 0.296791 3:+986128 None:intergenic
CTCAGAGGAGTTTGTCTTAG+TGG 0.311907 3:-983744 MsG0380011529.01.T01:CDS
GACGACCTCTTTGAATTTGC+TGG 0.321873 3:-984103 MsG0380011529.01.T01:CDS
TGGATTTCCCTTTGTTGAAT+AGG 0.333411 3:+983661 None:intergenic
CAAAGGTGATCAATCACTTT+TGG 0.340937 3:-983937 MsG0380011529.01.T01:CDS
AGCAGTAAAACAAAAGATTA+TGG 0.348530 3:-986248 MsG0380011529.01.T01:CDS
GTGGCTTTATGTAAAAGTTC+TGG 0.359573 3:-983725 MsG0380011529.01.T01:CDS
CCCAACCAAAATTTCGAGAT+TGG 0.381987 3:+983687 None:intergenic
ACAAATTGTATTGGATTTCA+AGG 0.384142 3:-986206 MsG0380011529.01.T01:CDS
AGGCTGAAAATATTGATACT+AGG 0.410413 3:-986186 MsG0380011529.01.T01:CDS
TTTGGCACTTAGCCTATTGT+GGG 0.419830 3:-983919 MsG0380011529.01.T01:CDS
TTGCTGGTGTGTGCAAGAAT+TGG 0.427087 3:-984087 MsG0380011529.01.T01:CDS
GCCTATTGTGGGTCTTCTAG+TGG 0.450870 3:-983908 MsG0380011529.01.T01:CDS
TCTATTTACAAGAAGAAAGA+TGG 0.476603 3:-983840 MsG0380011529.01.T01:CDS
TACACCTATGTTGACCTTGT+CGG 0.484152 3:+983589 None:intergenic
ATATGAAATCAAACTTCCAT+TGG 0.495726 3:-986084 MsG0380011529.01.T01:CDS
GGCTGAAAATATTGATACTA+GGG 0.509868 3:-986185 MsG0380011529.01.T01:CDS
ACAAAGTCAACAACCTTCCA+TGG 0.521231 3:+983641 None:intergenic
TCCACTAGAAGACCCACAAT+AGG 0.522549 3:+983907 None:intergenic
TCGGTCAGGTAAGCTGATGA+AGG 0.528144 3:+983973 None:intergenic
TGGGCTACCTATTCAACAAA+GGG 0.539431 3:-983668 MsG0380011529.01.T01:CDS
CCGAAAAGTTTATCACTCAA+AGG 0.559386 3:-983954 MsG0380011529.01.T01:CDS
CTGGTGTGTGCAAGAATTGG+AGG 0.583364 3:-984084 MsG0380011529.01.T01:CDS
ATTCAACAAAGGGAAATCCA+TGG 0.594657 3:-983658 MsG0380011529.01.T01:CDS
AACAAAGGGAAATCCATGGA+AGG 0.611683 3:-983654 MsG0380011529.01.T01:CDS
TTGGGCTACCTATTCAACAA+AGG 0.612964 3:-983669 MsG0380011529.01.T01:CDS
TAACGCTAATGCATCACCAC+GGG 0.620032 3:+986276 None:intergenic
TCGTCATTATCATGATCCAA+TGG 0.621838 3:+986068 None:intergenic
TATTTACGTCGTCACCGACA+AGG 0.624444 3:-983603 MsG0380011529.01.T01:CDS
ATGATATCAAGCAAATCCCA+AGG 0.642250 3:+984145 None:intergenic
TGCCAAAAGCAAGTAAGACA+TGG 0.647599 3:+983771 None:intergenic
GTCACCGACAAGGTCAACAT+AGG 0.650684 3:-983593 MsG0380011529.01.T01:CDS
ACACACCAGCAAATTCAAAG+AGG 0.672639 3:+984098 None:intergenic
TTTCATATTCAGTTGCACGA+AGG 0.679265 3:+986099 None:intergenic
ATGATGAAGAAGCGCACCCG+TGG 0.703947 3:-986292 MsG0380011529.01.T01:CDS
TGGTGTGTGCAAGAATTGGA+GGG 0.716460 3:-984083 MsG0380011529.01.T01:CDS
GTAACGCTAATGCATCACCA+CGG 0.738440 3:+986275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCTAATCTTATTAATAAT+AGG - Chr3:984801-984820 MsG0380011529.01.T01:intron 15.0%
!! ATTACATGATAATACTAATA+AGG + Chr3:985269-985288 None:intergenic 15.0%
!! ATTTATTTCCACATTATTTA+CGG + Chr3:985540-985559 None:intergenic 15.0%
!! TTATATTATCATAGAAAACA+AGG + Chr3:985574-985593 None:intergenic 15.0%
!! TTCCTATTATTAATAAGATT+AGG + Chr3:984806-984825 None:intergenic 15.0%
!!! ATCTTTTATACAAATTGTAT+TGG - Chr3:983654-983673 MsG0380011529.01.T01:CDS 15.0%
!!! TAATTTAGAGTTATTCTATT+TGG + Chr3:984830-984849 None:intergenic 15.0%
!! AATTTATTGGAGAAATTTCT+TGG - Chr3:985819-985838 MsG0380011529.01.T01:intron 20.0%
!! AGTAGAAAACTTTACTTTAA+AGG + Chr3:986070-986089 None:intergenic 20.0%
!! AGTGTACTAGTATTAATTTA+GGG - Chr3:984172-984191 MsG0380011529.01.T01:CDS 20.0%
!! ATCTCAAAATTAAATCTTCA+TGG + Chr3:983744-983763 None:intergenic 20.0%
!! GGGAATTTCATAAAATTTAT+TGG - Chr3:985806-985825 MsG0380011529.01.T01:intron 20.0%
!!! AGAGTTTTTAAAACTTATGA+AGG - Chr3:983910-983929 MsG0380011529.01.T01:CDS 20.0%
!!! GTACATAATTGTATTTTATG+TGG - Chr3:985500-985519 MsG0380011529.01.T01:intron 20.0%
!!! TTTCAAACTCTTAGAATTTT+AGG + Chr3:984767-984786 None:intergenic 20.0%
! AAAACTTATGAAGGATTTCA+AGG - Chr3:983919-983938 MsG0380011529.01.T01:CDS 25.0%
! AACAAATGGATAATTGCAAA+AGG - Chr3:984914-984933 MsG0380011529.01.T01:intron 25.0%
! ACAAATGGATAATTGCAAAA+GGG - Chr3:984915-984934 MsG0380011529.01.T01:intron 25.0%
! ACAAATTGTATTGGATTTCA+AGG - Chr3:983663-983682 MsG0380011529.01.T01:CDS 25.0%
! ACATTATTTACGGACAAAAA+TGG + Chr3:985530-985549 None:intergenic 25.0%
! ACTACTGACATTAAAAAAAG+AGG - Chr3:985474-985493 MsG0380011529.01.T01:intron 25.0%
! AGAATGTTAATTTCCATTAG+AGG - Chr3:985345-985364 MsG0380011529.01.T01:intron 25.0%
! AGCAGTAAAACAAAAGATTA+TGG - Chr3:983621-983640 MsG0380011529.01.T01:CDS 25.0%
! AGGAAAAAGATTTCTCATAA+TGG + Chr3:985879-985898 None:intergenic 25.0%
! ATAAGTTTATCGCAGAATAT+AGG + Chr3:984140-984159 None:intergenic 25.0%
! ATATGAAATCAAACTTCCAT+TGG - Chr3:983785-983804 MsG0380011529.01.T01:CDS 25.0%
! GAGTGTACTAGTATTAATTT+AGG - Chr3:984171-984190 MsG0380011529.01.T01:CDS 25.0%
! GGAAAAAGATTTCTCATAAT+GGG + Chr3:985878-985897 None:intergenic 25.0%
! GTCATATTTGAAAATACACT+TGG + Chr3:985073-985092 None:intergenic 25.0%
! GTTATTGCATAATAGTTCAA+TGG - Chr3:985132-985151 MsG0380011529.01.T01:intron 25.0%
! TAATTTAGGGACTAATTTGA+TGG - Chr3:984185-984204 MsG0380011529.01.T01:CDS 25.0%
! TACACTTGGCATAATATAAT+TGG + Chr3:985059-985078 None:intergenic 25.0%
! TCTATTTACAAGAAGAAAGA+TGG - Chr3:986029-986048 MsG0380011529.01.T01:CDS 25.0%
! TTGTTTATTGATAAGCAGAT+AGG - Chr3:984266-984285 MsG0380011529.01.T01:intron 25.0%
!! AAGAGTAAGGATTTGTTTAA+AGG - Chr3:983973-983992 MsG0380011529.01.T01:CDS 25.0%
!! AGACAATTGGATTATTGATT+AGG + Chr3:984868-984887 None:intergenic 25.0%
!! AGAGTAAGGATTTGTTTAAA+GGG - Chr3:983974-983993 MsG0380011529.01.T01:CDS 25.0%
!! ATTTTTGTCCGTAAATAATG+TGG - Chr3:985529-985548 MsG0380011529.01.T01:intron 25.0%
!! TTACAAAACCTGAAAGTTTT+AGG + Chr3:984688-984707 None:intergenic 25.0%
!!! AGATGATTTTTTAGTTCCTT+GGG - Chr3:985708-985727 MsG0380011529.01.T01:intron 25.0%
!!! ATATAATTGGTTTTGGCAAA+TGG + Chr3:985046-985065 None:intergenic 25.0%
!!! CTATTGTTCATTTGCTATAA+GGG - Chr3:985425-985444 MsG0380011529.01.T01:intron 25.0%
!!! TATTGTTCATTTGCTATAAG+GGG - Chr3:985426-985445 MsG0380011529.01.T01:intron 25.0%
!!! TCTATTGTTCATTTGCTATA+AGG - Chr3:985424-985443 MsG0380011529.01.T01:intron 25.0%
!!! TGGCATAATATAATTGGTTT+TGG + Chr3:985053-985072 None:intergenic 25.0%
AAAGTAAAAGATACGTATCG+AGG - Chr3:983866-983885 MsG0380011529.01.T01:CDS 30.0%
AAGATGTTCCTAAAACTTTC+AGG - Chr3:984677-984696 MsG0380011529.01.T01:intron 30.0%
ACAATTGACAATGCAACAAA+TGG - Chr3:984900-984919 MsG0380011529.01.T01:intron 30.0%
ACTAAATTGTGAAAGCAAGA+AGG - Chr3:984598-984617 MsG0380011529.01.T01:intron 30.0%
AGAGTGTATGAGTTGTTTAA+AGG - Chr3:983718-983737 MsG0380011529.01.T01:CDS 30.0%
AGGCTGAAAATATTGATACT+AGG - Chr3:983683-983702 MsG0380011529.01.T01:CDS 30.0%
ATGGTTACAAGCTTATTTGT+AGG - Chr3:985151-985170 MsG0380011529.01.T01:intron 30.0%
GAACAAACAAGATTTGATCA+CGG + Chr3:984433-984452 None:intergenic 30.0%
GGCTGAAAATATTGATACTA+GGG - Chr3:983684-983703 MsG0380011529.01.T01:CDS 30.0%
TTTGTTGCATTGTCAATTGT+GGG + Chr3:984900-984919 None:intergenic 30.0%
! ATTCCAAGCTTACAGATTTT+AGG - Chr3:985004-985023 MsG0380011529.01.T01:intron 30.0%
! ATTTGTTGCATTGTCAATTG+TGG + Chr3:984901-984920 None:intergenic 30.0%
! CCTTTGAGTGATAAACTTTT+CGG + Chr3:985918-985937 None:intergenic 30.0%
! GAAGACTTTTGAACAAGTAA+TGG + Chr3:985856-985875 None:intergenic 30.0%
!! AACCATTTTAATGCCTCTAA+TGG + Chr3:985361-985380 None:intergenic 30.0%
!! AGGGCATACAGATTTAATTT+TGG - Chr3:983993-984012 MsG0380011529.01.T01:CDS 30.0%
!! ATCCATTTTAATGCCTCTAA+TGG + Chr3:985403-985422 None:intergenic 30.0%
!! GGGCATACAGATTTAATTTT+GGG - Chr3:983994-984013 MsG0380011529.01.T01:CDS 30.0%
!! TTCCATTAGAGGCATTAAAA+TGG - Chr3:985356-985375 MsG0380011529.01.T01:intron 30.0%
!!! CAGATGATTTTTTAGTTCCT+TGG - Chr3:985707-985726 MsG0380011529.01.T01:intron 30.0%
AGCTTGGAATGTGCATAAAT+AGG + Chr3:984994-985013 None:intergenic 35.0%
AGTGTGTTTCCATATGTCTT+AGG + Chr3:984036-984055 None:intergenic 35.0%
ATAAGCTAAGCTATGTTGCT+TGG - Chr3:985231-985250 MsG0380011529.01.T01:intron 35.0%
ATCCCAAATCATAACGCTAA+GGG - Chr3:984729-984748 MsG0380011529.01.T01:intron 35.0%
ATCTTCTTGCCTAAGACATA+TGG - Chr3:984024-984043 MsG0380011529.01.T01:CDS 35.0%
ATGATATCAAGCAAATCCCA+AGG + Chr3:985727-985746 None:intergenic 35.0%
ATTCAACAAAGGGAAATCCA+TGG - Chr3:986211-986230 MsG0380011529.01.T01:CDS 35.0%
CCGAAAAGTTTATCACTCAA+AGG - Chr3:985915-985934 MsG0380011529.01.T01:intron 35.0%
GATAATTGCAAAAGGGAAAG+AGG - Chr3:984922-984941 MsG0380011529.01.T01:intron 35.0%
GATCCTAAAATCTGTAAGCT+TGG + Chr3:985010-985029 None:intergenic 35.0%
GCTTGTAGAATTGATACAAG+TGG - Chr3:983941-983960 MsG0380011529.01.T01:CDS 35.0%
GTCAGAGACTAAGGAATAAT+TGG - Chr3:984401-984420 MsG0380011529.01.T01:intron 35.0%
TATCCCAAATCATAACGCTA+AGG - Chr3:984728-984747 MsG0380011529.01.T01:intron 35.0%
TCGTCATTATCATGATCCAA+TGG + Chr3:983804-983823 None:intergenic 35.0%
TGGATTTCCCTTTGTTGAAT+AGG + Chr3:986211-986230 None:intergenic 35.0%
TGTCATTGTTGTGATACGTA+GGG - Chr3:985665-985684 MsG0380011529.01.T01:intron 35.0%
TTATGTTGCTGTCTCATATC+AGG - Chr3:985306-985325 MsG0380011529.01.T01:intron 35.0%
TTGTCATTGTTGTGATACGT+AGG - Chr3:985664-985683 MsG0380011529.01.T01:intron 35.0%
TTTCATATTCAGTTGCACGA+AGG + Chr3:983773-983792 None:intergenic 35.0%
! AATTGATACAAGTGGTGTTG+CGG - Chr3:983949-983968 MsG0380011529.01.T01:CDS 35.0%
! ATCTGCTACCTTCTTCTTTT+TGG + Chr3:985692-985711 None:intergenic 35.0%
! CAAAGGTGATCAATCACTTT+TGG - Chr3:985932-985951 MsG0380011529.01.T01:intron 35.0%
! GTCTACCAATCTCGAAATTT+TGG - Chr3:986177-986196 MsG0380011529.01.T01:CDS 35.0%
! TACCATGTCTTACTTGCTTT+TGG - Chr3:986096-986115 MsG0380011529.01.T01:CDS 35.0%
!! ACCAATCTCGAAATTTTGGT+TGG - Chr3:986181-986200 MsG0380011529.01.T01:CDS 35.0%
!! GTGGCTTTATGTAAAAGTTC+TGG - Chr3:986144-986163 MsG0380011529.01.T01:CDS 35.0%
!!! CCAATCTCGAAATTTTGGTT+GGG - Chr3:986182-986201 MsG0380011529.01.T01:CDS 35.0%
AACAAAGGGAAATCCATGGA+AGG - Chr3:986215-986234 MsG0380011529.01.T01:CDS 40.0%
ACAAAGTCAACAACCTTCCA+TGG + Chr3:986231-986250 None:intergenic 40.0%
ACACACCAGCAAATTCAAAG+AGG + Chr3:985774-985793 None:intergenic 40.0%
ACCCCTTAGCGTTATGATTT+GGG + Chr3:984734-984753 None:intergenic 40.0%
ATAAGCAGATAGGTCACTCA+AGG - Chr3:984276-984295 MsG0380011529.01.T01:intron 40.0%
CATGCACAATAGCTTACAGT+GGG - Chr3:985182-985201 MsG0380011529.01.T01:intron 40.0%
CCCAACCAAAATTTCGAGAT+TGG + Chr3:986185-986204 None:intergenic 40.0%
TACACCTATGTTGACCTTGT+CGG + Chr3:986283-986302 None:intergenic 40.0%
TAGGTCACTCAAGGTTTACA+CGG - Chr3:984285-984304 MsG0380011529.01.T01:intron 40.0%
TCCCAAATCATAACGCTAAG+GGG - Chr3:984730-984749 MsG0380011529.01.T01:intron 40.0%
TGCCAAAAGCAAGTAAGACA+TGG + Chr3:986101-986120 None:intergenic 40.0%
TGGGCTACCTATTCAACAAA+GGG - Chr3:986201-986220 MsG0380011529.01.T01:CDS 40.0%
TTGGGCTACCTATTCAACAA+AGG - Chr3:986200-986219 MsG0380011529.01.T01:CDS 40.0%
TTTGGCACTTAGCCTATTGT+GGG - Chr3:985950-985969 MsG0380011529.01.T01:intron 40.0%
! AAGGGGCATGATCACTTAAA+TGG - Chr3:985443-985462 MsG0380011529.01.T01:intron 40.0%
! GAGTGATAAACTTTTCGGTC+AGG + Chr3:985913-985932 None:intergenic 40.0%
! TTTTGGCACTTAGCCTATTG+TGG - Chr3:985949-985968 MsG0380011529.01.T01:intron 40.0%
!! GTCTTACTTGCTTTTGGCAA+AGG - Chr3:986102-986121 MsG0380011529.01.T01:CDS 40.0%
AGGTCACTCAAGGTTTACAC+GGG - Chr3:984286-984305 MsG0380011529.01.T01:intron 45.0%
CACCCCTTAGCGTTATGATT+TGG + Chr3:984735-984754 None:intergenic 45.0%
CACTATGCAGTCAGAGACTA+AGG - Chr3:984392-984411 MsG0380011529.01.T01:intron 45.0%
CGTAGGGTCCAAAAAGAAGA+AGG - Chr3:985681-985700 MsG0380011529.01.T01:intron 45.0%
CTCAGAGGAGTTTGTCTTAG+TGG - Chr3:986125-986144 MsG0380011529.01.T01:CDS 45.0%
GACGACCTCTTTGAATTTGC+TGG - Chr3:985766-985785 MsG0380011529.01.T01:intron 45.0%
GCATGCACAATAGCTTACAG+TGG - Chr3:985181-985200 MsG0380011529.01.T01:intron 45.0%
GTAACGCTAATGCATCACCA+CGG + Chr3:983597-983616 None:intergenic 45.0%
TAACGCTAATGCATCACCAC+GGG + Chr3:983596-983615 None:intergenic 45.0%
TACTAACCAGTGTCAAGCTG+AGG + Chr3:984063-984082 None:intergenic 45.0%
TATTTACGTCGTCACCGACA+AGG - Chr3:986266-986285 MsG0380011529.01.T01:CDS 45.0%
TCCACTAGAAGACCCACAAT+AGG + Chr3:985965-985984 None:intergenic 45.0%
TGCGACATTTCGCATTTGCT+GGG - Chr3:984234-984253 MsG0380011529.01.T01:intron 45.0%
TGGGAACTCTGACAGACAAT+TGG + Chr3:984881-984900 None:intergenic 45.0%
TGGTGTGTGCAAGAATTGGA+GGG - Chr3:985786-985805 MsG0380011529.01.T01:intron 45.0%
TTGCGACATTTCGCATTTGC+TGG - Chr3:984233-984252 MsG0380011529.01.T01:intron 45.0%
TTGCTGGTGTGTGCAAGAAT+TGG - Chr3:985782-985801 MsG0380011529.01.T01:intron 45.0%
! CATTTCGCATTTGCTGGGTT+TGG - Chr3:984239-984258 MsG0380011529.01.T01:intron 45.0%
!! GGTTTTGGCAAATGGACATG+CGG + Chr3:985038-985057 None:intergenic 45.0%
ACACGGGTACTCTAGTAAGC+TGG - Chr3:984302-984321 MsG0380011529.01.T01:intron 50.0%
CTGGTGTGTGCAAGAATTGG+AGG - Chr3:985785-985804 MsG0380011529.01.T01:intron 50.0%
GCCTATTGTGGGTCTTCTAG+TGG - Chr3:985961-985980 MsG0380011529.01.T01:intron 50.0%
GTCACCGACAAGGTCAACAT+AGG - Chr3:986276-986295 MsG0380011529.01.T01:CDS 50.0%
TCGGTCAGGTAAGCTGATGA+AGG + Chr3:985899-985918 None:intergenic 50.0%
! TGCTTTTGGCAAAGGCTCAG+AGG - Chr3:986110-986129 MsG0380011529.01.T01:CDS 50.0%
!! GTGGTGTTGCGGAAAGAGTA+AGG - Chr3:983960-983979 MsG0380011529.01.T01:CDS 50.0%
CTTCGACCTCAGCTTGACAC+TGG - Chr3:984054-984073 MsG0380011529.01.T01:CDS 55.0%
! ATGATGAAGAAGCGCACCCG+TGG - Chr3:983577-983596 MsG0380011529.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 983577 986314 983577 ID=MsG0380011529.01;Name=MsG0380011529.01
Chr3 mRNA 983577 986314 983577 ID=MsG0380011529.01.T01;Parent=MsG0380011529.01;Name=MsG0380011529.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|306
Chr3 exon 986023 986314 986023 ID=MsG0380011529.01.T01:exon:661;Parent=MsG0380011529.01.T01
Chr3 exon 983577 984205 983577 ID=MsG0380011529.01.T01:exon:660;Parent=MsG0380011529.01.T01
Chr3 CDS 986023 986314 986023 ID=MsG0380011529.01.T01:cds;Parent=MsG0380011529.01.T01
Chr3 CDS 983577 984205 983577 ID=MsG0380011529.01.T01:cds;Parent=MsG0380011529.01.T01
Gene Sequence

>MsG0380011529.01.T01

ATGATGAAGAAGCGCACCCGTGGTGATGCATTAGCGTTACTCGCAGCAGTAAAACAAAAGATTATGGAAAAGTATGAATCTTTTATACAAATTGTATTGGATTTCAAGGCTGAAAATATTGATACTAGGGTTGTCAAATTAAGAGTGTATGAGTTGTTTAAAGGCCATGAAGATTTAATTTTGAGATTCAACACCTTCGTGCAACTGAATATGAAATCAAACTTCCATTGGATCATGATAATGACGATAGTCGTGATTAGAGAAAAAAGATGCATTATCGTTTCTCAAGAAAGGTCCAAAAAGAAGAAGGTAGCAGATGATTTTTTAGTTCCTTGGGATTTGCTTGATATCATTTCTAGAAAACTAGATTTTGACGACCTCTTTGAATTTGCTGGTGTGTGCAAGAATTGGAGGGAATTTCATAAAATTTATTGGAGAAATTTCTTGGCATCTGAAGAACCATTACTTGTTCAAAAGTCTTCCCATTATGAGAAATCTTTTTCCTTCATCAGCTTACCTGACCGAAAAGTTTATCACTCAAAGGTGATCAATCACTTTTGGCACTTAGCCTATTGTGGGTCTTCTAGTGGATATTTGATCATGACAACGCAAAATAATTCATTTATGCTAATGAATCTATTTACAAGAAGAAAGATGGAAATCAATACGTCATCCTTTAAAGTAAAGTTTTCTACTTTTGCTTACCATGTCTTACTTGCTTTTGGCAAAGGCTCAGAGGAGTTTGTCTTAGTGGCTTTATGTAAAAGTTCTGGCAGTTTGCATGTCTACCAATCTCGAAATTTTGGTTGGGCTACCTATTCAACAAAGGGAAATCCATGGAAGGTTGTTGACTTTGTTGTTTTTCATAATACTATTTACGTCGTCACCGACAAGGTCAACATAGGTGTACTCGATCCTTGA
Protein sequence

>MsG0380011529.01.T01

MMKKRTRGDALALLAAVKQKIMEKYESFIQIVLDFKAENIDTRVVKLRVYELFKGHEDLILRFNTFVQLNMKSNFHWIMIMTIVVIREKRCIIVSQERSKKKKVADDFLVPWDLLDIISRKLDFDDLFEFAGVCKNWREFHKIYWRNFLASEEPLLVQKSSHYEKSFSFISLPDRKVYHSKVINHFWHLAYCGSSSGYLIMTTQNNSFMLMNLFTRRKMEINTSSFKVKFSTFAYHVLLAFGKGSEEFVLVALCKSSGSLHVYQSRNFGWATYSTKGNPWKVVDFVVFHNTIYVVTDKVNIGVLDP*