AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011530.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011530.01.T01 MTR_3g006010 73.346 529 81 2 39 567 1 469 0.0 748
MsG0380011530.01.T01 MTR_3g006120 95.170 352 17 0 216 567 1 352 0.0 697
MsG0380011530.01.T01 MTR_3g006100 92.550 349 26 0 216 564 1 349 0.0 676
MsG0380011530.01.T01 MTR_3g006180 92.899 338 24 0 229 566 1 338 0.0 653
MsG0380011530.01.T01 MTR_3g006140 72.934 351 95 0 212 562 19 369 0.0 538
MsG0380011530.01.T01 MTR_4g133490 70.520 346 90 2 224 564 7 345 1.69e-165 474
MsG0380011530.01.T01 MTR_6g091830 51.770 452 190 9 138 567 10 455 1.03e-151 443
MsG0380011530.01.T01 MTR_6g092140 51.549 452 191 9 138 567 10 455 2.22e-150 440
MsG0380011530.01.T01 MTR_4g133320 70.684 307 86 2 259 564 2 305 4.94e-143 416
MsG0380011530.01.T01 MTR_7g083950 53.103 435 180 10 139 567 16 432 2.65e-135 400
MsG0380011530.01.T01 MTR_3g068220 58.611 360 132 4 216 564 1 354 3.82e-135 397
MsG0380011530.01.T01 MTR_7g070100 58.092 346 141 4 223 567 8 350 1.28e-126 375
MsG0380011530.01.T01 MTR_3g045700 56.180 356 146 5 216 567 1 350 4.64e-126 374
MsG0380011530.01.T01 MTR_6g088340 46.405 459 182 9 135 567 13 433 5.26e-123 369
MsG0380011530.01.T01 MTR_3g006185 97.143 175 5 0 39 213 1 175 3.62e-118 347
MsG0380011530.01.T01 MTR_3g006105 89.143 175 18 1 39 212 1 175 6.51e-103 308
MsG0380011530.01.T01 MTR_1g100280 49.859 355 142 6 219 567 13 337 1.50e-102 313
MsG0380011530.01.T01 MTR_3g006125 88.398 181 20 1 34 213 77 257 4.19e-98 299
MsG0380011530.01.T01 MTR_6g011110 56.272 279 110 3 298 567 2 277 8.43e-97 296
MsG0380011530.01.T01 MTR_1g109340 60.079 253 93 3 318 566 106 354 8.77e-93 288
MsG0380011530.01.T01 MTR_3g085910 47.664 321 109 6 221 531 5 276 8.64e-89 275
MsG0380011530.01.T01 MTR_3g086480 56.641 256 105 4 305 559 3 253 7.47e-83 259
MsG0380011530.01.T01 MTR_3g006065 57.812 192 72 3 39 230 1 183 3.07e-61 201
MsG0380011530.01.T01 MTR_3g006150 63.415 164 52 2 39 202 1 156 3.00e-58 192
MsG0380011530.01.T01 MTR_3g006150 46.250 80 39 1 136 215 8 83 7.24e-12 64.3
MsG0380011530.01.T01 MTR_1g109520 59.494 158 60 1 413 566 19 176 2.64e-55 184
MsG0380011530.01.T01 MTR_1g089620 60.448 134 50 1 390 523 30 160 3.29e-45 161
MsG0380011530.01.T01 MTR_1g089085 54.362 149 63 3 211 358 31 175 2.69e-44 155
MsG0380011530.01.T01 MTR_1g012330 63.504 137 50 0 298 434 2 138 7.00e-44 157
MsG0380011530.01.T01 MTR_1g109090 50.000 134 66 1 211 343 8 141 1.39e-35 130
MsG0380011530.01.T01 MTR_1g106050 59.813 107 41 1 219 323 2 108 3.23e-34 126
MsG0380011530.01.T01 MTR_1g104960 45.679 162 83 4 44 205 11 167 2.79e-31 120
MsG0380011530.01.T01 MTR_4g133300 44.444 180 92 4 36 215 79 250 1.01e-29 117
MsG0380011530.01.T01 MTR_4g133300 42.953 149 75 3 63 211 25 163 2.39e-25 105
MsG0380011530.01.T01 MTR_4g133470 44.444 180 92 4 36 215 79 250 1.24e-29 117
MsG0380011530.01.T01 MTR_4g133470 41.611 149 77 3 63 211 25 163 1.59e-23 100
MsG0380011530.01.T01 MTR_1g105955 42.767 159 79 2 47 205 17 163 5.01e-28 111
MsG0380011530.01.T01 MTR_1g105955 38.596 114 48 4 1 114 71 162 9.43e-11 61.6
MsG0380011530.01.T01 MTR_6g023220 27.243 301 211 6 224 522 18 312 1.25e-26 112
MsG0380011530.01.T01 MTR_1g093300 53.398 103 48 0 391 493 1 103 2.45e-26 104
MsG0380011530.01.T01 MTR_8g062700 42.604 169 92 3 31 199 27 190 8.32e-26 113
MsG0380011530.01.T01 MTR_8g062700 38.235 136 65 2 129 264 35 151 1.83e-18 90.1
MsG0380011530.01.T01 MTR_8g062700 42.604 169 92 3 31 199 27 190 8.47e-26 113
MsG0380011530.01.T01 MTR_8g062700 38.235 136 65 2 129 264 35 151 1.79e-18 90.1
MsG0380011530.01.T01 MTR_0128s0040 42.105 133 75 2 248 380 3 133 5.71e-25 100
MsG0380011530.01.T01 MTR_1g104980 38.462 169 81 5 61 229 13 158 1.39e-23 98.2
MsG0380011530.01.T01 MTR_6g091850 43.564 101 51 2 473 567 1 101 1.60e-23 95.5
MsG0380011530.01.T01 MTR_6g008995 38.764 178 96 6 33 209 27 192 1.18e-21 98.6
MsG0380011530.01.T01 MTR_6g008995 34.586 133 66 3 132 264 33 144 9.25e-13 70.9
MsG0380011530.01.T01 MTR_7g013380 35.542 166 100 3 46 209 99 259 2.62e-21 95.1
MsG0380011530.01.T01 MTR_7g013380 35.870 184 107 4 40 217 7 185 5.72e-20 91.3
MsG0380011530.01.T01 MTR_7g013380 36.000 100 63 1 32 130 171 270 1.20e-12 69.3
MsG0380011530.01.T01 MTR_5g036670 34.343 198 117 5 4 200 7 192 3.31e-21 99.0
MsG0380011530.01.T01 MTR_5g036670 54.054 74 33 1 132 205 39 111 7.34e-16 82.0
MsG0380011530.01.T01 MTR_6g008970 39.752 161 90 4 40 199 57 211 1.41e-20 97.1
MsG0380011530.01.T01 MTR_6g008970 48.649 74 37 1 132 205 59 131 1.70e-13 74.3
MsG0380011530.01.T01 MTR_1g104940 47.664 107 43 2 43 136 9 115 1.77e-20 87.8
MsG0380011530.01.T01 MTR_1g104940 43.750 80 44 1 136 215 14 92 1.73e-11 62.0
MsG0380011530.01.T01 MTR_1g104937 50.538 93 41 2 44 136 10 97 6.11e-18 80.1
MsG0380011530.01.T01 MTR_1g109550 37.762 143 74 3 45 187 15 142 1.45e-16 77.0
MsG0380011530.01.T01 MTR_1g109550 41.250 80 45 1 136 215 16 93 5.19e-12 64.3
MsG0380011530.01.T01 MTR_6g008995 37.324 142 80 4 69 209 2 135 5.04e-16 80.9
MsG0380011530.01.T01 MTR_1g105960 40.476 126 44 3 47 172 2 96 5.65e-16 74.3
MsG0380011530.01.T01 MTR_1g105960 50.000 78 38 1 137 214 2 78 2.21e-14 69.7
MsG0380011530.01.T01 MTR_8g062350 33.668 199 88 6 40 199 8 201 6.86e-15 73.9
MsG0380011530.01.T01 MTR_8g062350 42.857 98 53 2 129 226 7 101 3.15e-14 72.0
MsG0380011530.01.T01 MTR_7g013410 33.813 139 83 2 61 199 12 141 1.29e-14 71.6
MsG0380011530.01.T01 MTR_1g105010 36.752 117 73 1 122 238 2 117 3.41e-13 66.6
MsG0380011530.01.T01 MTR_3g006000 51.515 66 31 1 144 208 14 79 7.92e-13 64.7
MsG0380011530.01.T01 MTR_2g097830 38.739 111 55 2 46 156 70 167 1.38e-12 66.6
MsG0380011530.01.T01 MTR_1g104950 41.573 89 44 2 70 158 1 81 1.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011530.01.T01 AT3G01320 41.875 160 87 3 40 199 51 204 1.87e-22 102
MsG0380011530.01.T01 AT3G01320 50.000 74 36 1 132 205 53 125 3.90e-14 76.3
MsG0380011530.01.T01 AT3G01320 41.875 160 87 3 40 199 51 204 1.94e-22 102
MsG0380011530.01.T01 AT3G01320 50.000 74 36 1 132 205 53 125 3.96e-14 76.3
MsG0380011530.01.T01 AT1G70030 38.889 162 88 4 40 199 5 157 9.80e-22 92.4
MsG0380011530.01.T01 AT1G70060 39.375 160 93 3 40 199 8 163 7.66e-21 97.8
MsG0380011530.01.T01 AT1G70060 49.351 77 38 1 129 205 7 82 2.95e-14 76.6
MsG0380011530.01.T01 AT1G70060 39.375 160 93 3 40 199 8 163 7.66e-21 97.8
MsG0380011530.01.T01 AT1G70060 49.351 77 38 1 129 205 7 82 2.95e-14 76.6
MsG0380011530.01.T01 AT5G15020 36.723 177 105 3 40 216 46 215 2.03e-20 96.3
MsG0380011530.01.T01 AT5G15020 36.723 177 105 3 40 216 46 215 2.45e-20 96.3
MsG0380011530.01.T01 AT1G24190 36.875 160 96 3 40 199 8 162 3.52e-20 95.5
MsG0380011530.01.T01 AT1G24190 43.182 88 42 2 129 209 7 93 1.23e-13 74.7
MsG0380011530.01.T01 AT1G24190 36.875 160 96 3 40 199 8 162 3.84e-20 95.5
MsG0380011530.01.T01 AT1G24190 43.182 88 42 2 129 209 7 93 1.32e-13 74.7
MsG0380011530.01.T01 AT1G24190 36.875 160 96 3 40 199 8 162 3.85e-20 95.5
MsG0380011530.01.T01 AT1G24190 43.182 88 42 2 129 209 7 93 1.29e-13 74.7
MsG0380011530.01.T01 AT1G24230 32.065 184 100 4 29 211 1 160 1.68e-19 88.6
MsG0380011530.01.T01 AT1G24230 29.333 150 98 2 46 195 86 227 8.18e-12 65.9
MsG0380011530.01.T01 AT1G10450 37.576 165 94 4 46 209 84 240 1.84e-18 90.1
MsG0380011530.01.T01 AT1G10450 44.444 90 42 2 134 216 82 170 1.32e-13 74.7
MsG0380011530.01.T01 AT1G10450 37.576 165 94 4 46 209 33 189 2.27e-18 89.7
MsG0380011530.01.T01 AT1G10450 44.444 90 42 2 134 216 31 119 1.37e-13 74.7
MsG0380011530.01.T01 AT1G10450 37.576 165 94 4 46 209 33 189 2.27e-18 89.7
MsG0380011530.01.T01 AT1G10450 44.444 90 42 2 134 216 31 119 1.37e-13 74.7
MsG0380011530.01.T01 AT1G24250 29.070 172 105 2 43 198 11 181 1.85e-17 82.8
MsG0380011530.01.T01 AT1G24200 35.220 159 95 3 41 199 9 159 3.53e-17 80.5
MsG0380011530.01.T01 AT1G24200 45.455 99 43 3 129 219 7 102 5.40e-14 71.2
MsG0380011530.01.T01 AT1G59890 37.013 154 90 3 46 199 45 191 7.66e-17 85.1
MsG0380011530.01.T01 AT1G59890 54.286 70 31 1 136 205 45 113 8.06e-15 78.6
MsG0380011530.01.T01 AT1G59890 37.013 154 90 3 46 199 45 191 9.30e-17 84.7
MsG0380011530.01.T01 AT1G59890 54.286 70 31 1 136 205 45 113 8.44e-15 78.6
MsG0380011530.01.T01 AT1G59890 37.013 154 90 3 46 199 45 191 9.32e-17 84.7
MsG0380011530.01.T01 AT1G59890 54.286 70 31 1 136 205 45 113 8.31e-15 78.6
MsG0380011530.01.T01 AT1G59890 37.013 154 90 3 46 199 45 191 9.70e-17 84.7
MsG0380011530.01.T01 AT1G59890 54.286 70 31 1 136 205 45 113 8.43e-15 78.6
MsG0380011530.01.T01 AT5G15025 55.405 74 32 1 132 205 43 115 1.82e-16 76.3
MsG0380011530.01.T01 AT5G15025 47.059 85 39 2 42 126 43 121 1.14e-11 62.8
MsG0380011530.01.T01 AT1G70030 41.322 121 60 4 34 152 10 121 7.72e-15 71.6
MsG0380011530.01.T01 AT1G23810 29.814 161 107 2 43 198 11 170 8.75e-15 74.7
MsG0380011530.01.T01 AT1G70030 35.119 168 66 5 34 199 10 136 1.21e-14 71.6
MsG0380011530.01.T01 AT1G27260 32.680 153 100 3 47 198 4 154 1.15e-13 70.9
MsG0380011530.01.T01 AT1G27220 43.750 80 44 1 136 215 14 92 4.49e-13 68.6
MsG0380011530.01.T01 AT4G12020 45.946 74 38 1 132 205 304 375 3.45e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.50e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.55e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.55e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.55e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.55e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.64e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.65e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.65e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 299 375 3.71e-11 67.0
MsG0380011530.01.T01 AT4G12020 45.570 79 39 2 129 205 232 308 3.98e-11 66.6
MsG0380011530.01.T01 AT1G27250 47.692 65 33 1 136 200 21 84 5.10e-11 61.2

Find 124 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCATACGGATTTAATTT+TGG 0.145300 3:-998107 MsG0380011530.01.T01:CDS
ACCTTCTTTCTTCTTGTAAA+TGG 0.145840 3:+996523 None:intergenic
TGTCTATCAGTCTGGAAATT+TGG 0.158326 3:-996377 MsG0380011530.01.T01:CDS
TTCTGGCACGTTGCTTATTC+TGG 0.158749 3:-996604 MsG0380011530.01.T01:CDS
GGGAATTTCATAAAACTTAT+TGG 0.162427 3:-996747 MsG0380011530.01.T01:CDS
TAGGGGCCTTAAACAAAATT+TGG 0.166029 3:+998774 None:intergenic
ATAAGAAGAATTGACTTTAA+AGG 0.192960 3:+996486 None:intergenic
CTATCATGCTTAATGTATTT+TGG 0.196702 3:+995914 None:intergenic
TTTCAGTCTAGTCAAATTAT+TGG 0.198157 3:+995727 None:intergenic
TTTGAATAAGTAATGGTTCT+TGG 0.234598 3:+996707 None:intergenic
TACCATGTCTTGCTTGCTTT+TGG 0.255664 3:-996457 MsG0380011530.01.T01:CDS
TGGTGTATGGTTTCAACATT+AGG 0.274689 3:-995693 MsG0380011530.01.T01:three_prime_UTR
AAGATGGTTGTAAAATTTCT+TGG 0.292218 3:-996846 MsG0380011530.01.T01:CDS
TTCCATCTTGACAAAATTCA+TGG 0.296900 3:+996090 None:intergenic
ATTTCGAAATTAAATCTTCA+TGG 0.307910 3:+998374 None:intergenic
CTTTCTCCAGTTGAGTAATC+TGG 0.308084 3:-995818 MsG0380011530.01.T01:exon
CGAGCCGGCCCAACAAATCT+AGG 0.309243 3:+998755 None:intergenic
ACAACATGTAAAGTGTGTTT+AGG 0.310726 3:-995953 MsG0380011530.01.T01:CDS
GTCTATCAGTCTGGAAATTT+GGG 0.319305 3:-996376 MsG0380011530.01.T01:CDS
GTTAGTTATGCTAGAATTTG+TGG 0.329775 3:-999158 MsG0380011530.01.T01:CDS
CTTTCAAAACCCCACCTTCT+CGG 0.331626 3:+996007 None:intergenic
CAACATGTAAAGTGTGTTTA+GGG 0.332853 3:-995952 MsG0380011530.01.T01:CDS
GTCGCTTCATGTAAAAGTTC+TGG 0.337852 3:-996409 MsG0380011530.01.T01:CDS
GGTGTGATTCGATATTTCTT+TGG 0.344227 3:+998067 None:intergenic
AAAGGAAAACGCCTACTTGC+TGG 0.351938 3:-995876 MsG0380011530.01.T01:CDS
ATCAGTCTGGAAATTTGGGC+TGG 0.359141 3:-996372 MsG0380011530.01.T01:CDS
CCAAGGCGATCAATCAATTC+TGG 0.360139 3:-996621 MsG0380011530.01.T01:CDS
TTTAAGGCCCCTAGATTTGT+TGG 0.365910 3:-998764 MsG0380011530.01.T01:CDS
ACAAATTATGAAGGATTTCA+AGG 0.367445 3:-998452 MsG0380011530.01.T01:CDS
GTAGGTTTGGATTTGAGAAA+AGG 0.371809 3:-998495 MsG0380011530.01.T01:CDS
ATTAAGAGTGTACGAGTTGT+TGG 0.382597 3:-998401 MsG0380011530.01.T01:CDS
TAACCGGTGTCAAGCTGAAC+TGG 0.385684 3:+998043 None:intergenic
TACACCTATGTTGGCCTTGT+CGG 0.389440 3:+996273 None:intergenic
TCAAATTATTGGAAAACAAA+AGG 0.390496 3:+995738 None:intergenic
TAGCTTGTGATATTTGTGTT+TGG 0.400229 3:-995780 MsG0380011530.01.T01:three_prime_UTR
AGATGGTTGTAAAATTTCTT+GGG 0.404155 3:-996845 MsG0380011530.01.T01:CDS
TGAGAGCTTCTTCATCTTGA+AGG 0.407470 3:+998555 None:intergenic
GCAGCAGTTAAACGTAGGTT+TGG 0.408891 3:-998508 MsG0380011530.01.T01:CDS
TTTCAAAACCCCACCTTCTC+GGG 0.416348 3:+996008 None:intergenic
CAATAACCAGATTACTCAAC+TGG 0.422972 3:+995812 None:intergenic
GATGACCTCTTTCAATTCGC+TGG 0.428564 3:-996787 MsG0380011530.01.T01:CDS
AAAGTAAAAGATGTGTTTCA+TGG 0.431621 3:-998235 MsG0380011530.01.T01:CDS
TAGGTTTGGATTTGAGAAAA+GGG 0.438311 3:-998494 MsG0380011530.01.T01:CDS
TAAACACACTTTACATGTTG+TGG 0.439177 3:+995955 None:intergenic
AGCGGATATTTGATCATGAC+AGG 0.440460 3:-996574 MsG0380011530.01.T01:CDS
CTAGATTTGTTGGGCCGGCT+CGG 0.442856 3:-998754 MsG0380011530.01.T01:intron
GGTGTATGGTTTCAACATTA+GGG 0.449276 3:-995692 MsG0380011530.01.T01:three_prime_UTR
ATTGTTAAGGATTTCAAGGC+TGG 0.451018 3:-998178 MsG0380011530.01.T01:CDS
GTCATCGAAATCTAGATCTC+TGG 0.451722 3:+996804 None:intergenic
TGAGATAAATAGTTGTGAAA+TGG 0.452881 3:-995663 MsG0380011530.01.T01:three_prime_UTR
TCGATATTTCTTTGGCAAGA+AGG 0.460534 3:+998075 None:intergenic
CAAATTATTGGAAAACAAAA+GGG 0.467035 3:+995739 None:intergenic
TCGCTGGTGTGTGCAAGAAT+TGG 0.467150 3:-996771 MsG0380011530.01.T01:CDS
TTAAACAAAATTTGGAAATG+AGG 0.468129 3:+998782 None:intergenic
TTTGTCAAGATGGAAACTTT+GGG 0.468280 3:-996082 MsG0380011530.01.T01:CDS
AGGAAAAGGATTTCTTATCA+TGG 0.468556 3:+996677 None:intergenic
TTAAGGCCCCTAGATTTGTT+GGG 0.472029 3:-998763 MsG0380011530.01.T01:CDS
AGTTTGTATGTCTATCAGTC+TGG 0.474620 3:-996385 MsG0380011530.01.T01:CDS
AAAACGCCTACTTGCTGGAT+TGG 0.477038 3:-995871 MsG0380011530.01.T01:CDS
GAGCCGGCCCAACAAATCTA+GGG 0.488866 3:+998756 None:intergenic
GGAAAAGGATTTCTTATCAT+GGG 0.491468 3:+996678 None:intergenic
CTCAGGATGGTTAGTTGTGA+TGG 0.492017 3:-996178 MsG0380011530.01.T01:CDS
ATATGAAATCAAACTTCCAT+TGG 0.495726 3:-998329 MsG0380011530.01.T01:CDS
TCCATTTACAAGAAGAAAGA+AGG 0.500617 3:-996524 MsG0380011530.01.T01:CDS
TCGGTCAGCTATGCTGATGA+AGG 0.509137 3:+996657 None:intergenic
TCATCGTCGTCACGATCCAA+TGG 0.515446 3:+998313 None:intergenic
AGAGGGAATGATCTGCTTCA+AGG 0.517258 3:-998127 MsG0380011530.01.T01:CDS
TCAGTCTGGAAATTTGGGCT+GGG 0.521625 3:-996371 MsG0380011530.01.T01:CDS
GGCCCCTAGATTTGTTGGGC+CGG 0.521952 3:-998759 MsG0380011530.01.T01:CDS
GAGAGCTTCTTCATCTTGAA+GGG 0.526319 3:+998556 None:intergenic
CCAGAATTGATTGATCGCCT+TGG 0.527310 3:+996621 None:intergenic
GTAAACATTCAATATTTCCT+CGG 0.528220 3:+996129 None:intergenic
AGCTATGCTGATGAAGGAAA+AGG 0.531287 3:+996663 None:intergenic
GGCTGAAAGAATTGATGCTA+GGG 0.533185 3:-998431 MsG0380011530.01.T01:CDS
ACAAAGTCAACAACCTTCCA+TGG 0.536142 3:+996325 None:intergenic
TAACATCTACCTCACTCCTC+AGG 0.540088 3:-996195 MsG0380011530.01.T01:CDS
AGGCTGAAAGAATTGATGCT+AGG 0.540112 3:-998432 MsG0380011530.01.T01:CDS
GAGGGAATGATCTGCTTCAA+GGG 0.542159 3:-998126 MsG0380011530.01.T01:CDS
TGTTGTGGATGAAAGATTGA+TGG 0.544678 3:+995970 None:intergenic
AGTTTGATTTCATATTCAGT+TGG 0.545841 3:+998337 None:intergenic
AGTGATTCATATTGCTTCCG+AGG 0.546777 3:-996146 MsG0380011530.01.T01:CDS
CAAGTCAAGTACACCTATGT+TGG 0.548742 3:+996264 None:intergenic
ATTCAACAATGGAAAGTCCA+TGG 0.553899 3:-996342 MsG0380011530.01.T01:CDS
TGATCTGCTTCAAGGGCATA+CGG 0.554583 3:-998119 MsG0380011530.01.T01:CDS
ATAAGTGTTGCTGCGGCAAG+AGG 0.559399 3:-998145 MsG0380011530.01.T01:CDS
GCTTATTCTGGCTGTTCTAG+CGG 0.565805 3:-996592 MsG0380011530.01.T01:CDS
CATTGAGCAACCCGAGAAGG+TGG 0.569290 3:-996018 MsG0380011530.01.T01:CDS
TGTGTTTCATGGTAAGAATG+AGG 0.572647 3:-998224 MsG0380011530.01.T01:CDS
AACAATGGAAAGTCCATGGA+AGG 0.572932 3:-996338 MsG0380011530.01.T01:CDS
AAGATGAAGAAGCTCTCAGT+TGG 0.573928 3:-998550 MsG0380011530.01.T01:CDS
ACACACCAGCGAATTGAAAG+AGG 0.578254 3:+996782 None:intergenic
AGTGAGGTAGATGTTACATC+GGG 0.579813 3:+996202 None:intergenic
ATGCATTGAGCAACCCGAGA+AGG 0.585187 3:-996021 MsG0380011530.01.T01:CDS
GACGATGATGACGAACTACA+AGG 0.589561 3:-998298 MsG0380011530.01.T01:CDS
GCAATGAATAACATACAAGA+TGG 0.590425 3:-996862 MsG0380011530.01.T01:CDS
CTTTAGACATCTACACTATG+AGG 0.594856 3:-995846 MsG0380011530.01.T01:CDS
CTGGTGTGTGCAAGAATTGG+AGG 0.595567 3:-996768 MsG0380011530.01.T01:CDS
GCTAGAATTTGTGGACCACA+TGG 0.595691 3:-999149 MsG0380011530.01.T01:intron
AGTCGGGTTCATCACCGAGC+CGG 0.598850 3:+998740 None:intergenic
TAAGTGTTGCTGCGGCAAGA+GGG 0.604842 3:-998144 MsG0380011530.01.T01:CDS
TGCCAAAAGCAAGCAAGACA+TGG 0.610086 3:+996455 None:intergenic
GAGTGAGGTAGATGTTACAT+CGG 0.616275 3:+996201 None:intergenic
ATTGAGCAACCCGAGAAGGT+GGG 0.616952 3:-996017 MsG0380011530.01.T01:CDS
CCGAAAAGTTTATCACTCCA+AGG 0.620313 3:-996638 MsG0380011530.01.T01:CDS
AAAGCACCAATCCAGCAAGT+AGG 0.620337 3:+995865 None:intergenic
TTGAGCAACCCGAGAAGGTG+GGG 0.622323 3:-996016 MsG0380011530.01.T01:CDS
CTGGGTTACATATTCAACAA+TGG 0.624667 3:-996353 MsG0380011530.01.T01:CDS
AGAGTGTACGAGTTGTTGGA+CGG 0.625456 3:-998397 MsG0380011530.01.T01:CDS
CCTCCAGTTCAGCTTGACAC+CGG 0.627356 3:-998046 MsG0380011530.01.T01:intron
GTCACCGACAAGGCCAACAT+AGG 0.627828 3:-996277 MsG0380011530.01.T01:CDS
AGCCGGCCCAACAAATCTAG+GGG 0.636030 3:+998757 None:intergenic
ATCTACCTCACTCCTCAGGA+TGG 0.644112 3:-996191 MsG0380011530.01.T01:CDS
AATTGATATAAGTGTTGCTG+CGG 0.644511 3:-998152 MsG0380011530.01.T01:CDS
TAGAACTCGAGTTCCTCCAA+AGG 0.651017 3:-995894 MsG0380011530.01.T01:CDS
TAGACATCTACACTATGAGG+TGG 0.658182 3:-995843 MsG0380011530.01.T01:CDS
TATATACGTTGTCACCGACA+AGG 0.661708 3:-996287 MsG0380011530.01.T01:CDS
CCGGTGTCAAGCTGAACTGG+AGG 0.668666 3:+998046 None:intergenic
TACTCGCAGCAGTTAAACGT+AGG 0.669963 3:-998513 MsG0380011530.01.T01:CDS
ACTAACCATCCTGAGGAGTG+AGG 0.672997 3:+996186 None:intergenic
GCGGATATTTGATCATGACA+GGG 0.678093 3:-996573 MsG0380011530.01.T01:CDS
TGGTGTGTGCAAGAATTGGA+GGG 0.700448 3:-996767 MsG0380011530.01.T01:CDS
AACATGTAAAGTGTGTTTAG+GGG 0.701783 3:-995951 MsG0380011530.01.T01:CDS
CGGATATTTGATCATGACAG+GGG 0.702309 3:-996572 MsG0380011530.01.T01:CDS
CATCACAACTAACCATCCTG+AGG 0.720834 3:+996179 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATATATAAATAA+TGG + Chr3:996807-996826 None:intergenic 0.0%
!! AAAAAAAAAAACATATCTTT+CGG - Chr3:997866-997885 MsG0380011530.01.T01:intron 10.0%
!! ATAAATATATAAATAATGGT+AGG + Chr3:996803-996822 None:intergenic 10.0%
!!! TTTTTTATAAGAAAAAGTTT+AGG + Chr3:995908-995927 None:intergenic 10.0%
!!! TGAGTTTTTAAAAATTGTTA+AGG - Chr3:996625-996644 MsG0380011530.01.T01:CDS 15.0%
!!! TTCTAAAAATTTTATATCTG+TGG + Chr3:998582-998601 None:intergenic 15.0%
!! AAAAATTGTTAAGGATTTCA+AGG - Chr3:996634-996653 MsG0380011530.01.T01:CDS 20.0%
!! ATTTCGAAATTAAATCTTCA+TGG + Chr3:996445-996464 None:intergenic 20.0%
!! CAAATTATTGGAAAACAAAA+GGG + Chr3:999080-999099 None:intergenic 20.0%
!! GCTATAAAGATTCAATAAAT+TGG - Chr3:996843-996862 MsG0380011530.01.T01:CDS 20.0%
!! TCAAATTATTGGAAAACAAA+AGG + Chr3:999081-999100 None:intergenic 20.0%
!! TTAAACAAAATTTGGAAATG+AGG + Chr3:996037-996056 None:intergenic 20.0%
!! TTAGTAAAATTTATACCATG+TGG + Chr3:995685-995704 None:intergenic 20.0%
!!! ATAAGAAGAATTGACTTTAA+AGG + Chr3:998333-998352 None:intergenic 20.0%
!!! ATCTTTTCTACAAATTATGA+AGG - Chr3:996355-996374 MsG0380011530.01.T01:CDS 20.0%
!!! ATTTTGTTGTTGATCTTTAA+AGG - Chr3:996010-996029 MsG0380011530.01.T01:CDS 20.0%
!!! TCATTTCCAAATTTTGTTTA+AGG - Chr3:996036-996055 MsG0380011530.01.T01:CDS 20.0%
!!! TTTTGTTGTTGATCTTTAAA+GGG - Chr3:996011-996030 MsG0380011530.01.T01:CDS 20.0%
! AAAGGGAAACATAAAAAACA+TGG + Chr3:999063-999082 None:intergenic 25.0%
! AAAGTAAAAGATGTGTTTCA+TGG - Chr3:996581-996600 MsG0380011530.01.T01:CDS 25.0%
! AACTTATTGGAAAAAGTTCT+TGG - Chr3:998082-998101 MsG0380011530.01.T01:CDS 25.0%
! AAGATGGTTGTAAAATTTCT+TGG - Chr3:997970-997989 MsG0380011530.01.T01:intron 25.0%
! ACAAATTATGAAGGATTTCA+AGG - Chr3:996364-996383 MsG0380011530.01.T01:CDS 25.0%
! AGATGGTTGTAAAATTTCTT+GGG - Chr3:997971-997990 MsG0380011530.01.T01:intron 25.0%
! ATATGAAATCAAACTTCCAT+TGG - Chr3:996487-996506 MsG0380011530.01.T01:CDS 25.0%
! ATCACAACAATGACAATATT+AGG + Chr3:997923-997942 None:intergenic 25.0%
! ATGAAAACAAGTTATAGTGA+AGG + Chr3:996176-996195 None:intergenic 25.0%
! GATTAAGTTTAACGATAAGT+TGG - Chr3:996908-996927 MsG0380011530.01.T01:intron 25.0%
! GGGAATTTCATAAAACTTAT+TGG - Chr3:998069-998088 MsG0380011530.01.T01:CDS 25.0%
! GTAAACATTCAATATTTCCT+CGG + Chr3:998690-998709 None:intergenic 25.0%
! TGAGATAAATAGTTGTGAAA+TGG - Chr3:999153-999172 MsG0380011530.01.T01:CDS 25.0%
! TTTCAGTCTAGTCAAATTAT+TGG + Chr3:999092-999111 None:intergenic 25.0%
! TTTGAATAAGTAATGGTTCT+TGG + Chr3:998112-998131 None:intergenic 25.0%
! TTTGAGAAAAGGGAAAAATA+TGG - Chr3:996332-996351 MsG0380011530.01.T01:CDS 25.0%
!! AGTTTGATTTCATATTCAGT+TGG + Chr3:996482-996501 None:intergenic 25.0%
!! AGTTTTTACAAGTGAACATT+AGG + Chr3:997084-997103 None:intergenic 25.0%
!! ATCTTTGGAGAATTAAAAGT+AGG - Chr3:997024-997043 MsG0380011530.01.T01:intron 25.0%
!! CTATCATGCTTAATGTATTT+TGG + Chr3:998905-998924 None:intergenic 25.0%
!! GAAGACTTTTGAATAAGTAA+TGG + Chr3:998119-998138 None:intergenic 25.0%
!! TATTTCTTTTCTTCTGAACA+TGG - Chr3:997341-997360 MsG0380011530.01.T01:intron 25.0%
!! TCTTTGGAGAATTAAAAGTA+GGG - Chr3:997025-997044 MsG0380011530.01.T01:intron 25.0%
!! TTCATGCATTTTATGTCTAT+AGG - Chr3:997056-997075 MsG0380011530.01.T01:intron 25.0%
!! TTCATGTATTTTATGTCCAT+GGG - Chr3:997418-997437 MsG0380011530.01.T01:intron 25.0%
!!! ATTGCATTATTTTATGCTTC+GGG - Chr3:998761-998780 MsG0380011530.01.T01:CDS 25.0%
!!! CATTGCATTATTTTATGCTT+CGG - Chr3:998760-998779 MsG0380011530.01.T01:CDS 25.0%
!!! TTTTAATTCCAAAGTTTCAC+AGG + Chr3:997482-997501 None:intergenic 25.0%
AAAAAACATGTCATGGTGTA+TGG - Chr3:999110-999129 MsG0380011530.01.T01:intron 30.0%
AAACTAAAAAACACACAGAG+TGG + Chr3:997312-997331 None:intergenic 30.0%
AACATGTAAAGTGTGTTTAG+GGG - Chr3:998865-998884 MsG0380011530.01.T01:intron 30.0%
AACGCTTTCAATAGCAATAT+TGG + Chr3:997648-997667 None:intergenic 30.0%
AAGTTTAATAGACTTGAGTC+GGG + Chr3:996095-996114 None:intergenic 30.0%
ACAACAATGACAATATTAGG+TGG + Chr3:997920-997939 None:intergenic 30.0%
ACAACATGTAAAGTGTGTTT+AGG - Chr3:998863-998882 MsG0380011530.01.T01:intron 30.0%
ACCGTCATTGACATTATTTA+CGG + Chr3:995750-995769 None:intergenic 30.0%
ACCTTCTTTCTTCTTGTAAA+TGG + Chr3:998296-998315 None:intergenic 30.0%
AGAAGTGAGTGTAAGATTAA+GGG - Chr3:996886-996905 MsG0380011530.01.T01:intron 30.0%
AGAATGTTAATTTCCATGTG+AGG - Chr3:997787-997806 MsG0380011530.01.T01:intron 30.0%
AGACTGAAAAAAACATGTCA+TGG - Chr3:999103-999122 MsG0380011530.01.T01:intron 30.0%
AGGAAAAGGATTTCTTATCA+TGG + Chr3:998142-998161 None:intergenic 30.0%
ATATGACATGTATCAACCTT+AGG - Chr3:997183-997202 MsG0380011530.01.T01:intron 30.0%
ATGATAATTTCTTCGATTGC+AGG + Chr3:997165-997184 None:intergenic 30.0%
CAACATGTAAAGTGTGTTTA+GGG - Chr3:998864-998883 MsG0380011530.01.T01:intron 30.0%
CAGGTTTACAAAATATTGTC+TGG + Chr3:997146-997165 None:intergenic 30.0%
CTCGTATAAATATGAGTTGT+TGG - Chr3:997611-997630 MsG0380011530.01.T01:intron 30.0%
GAAGTTTAATAGACTTGAGT+CGG + Chr3:996096-996115 None:intergenic 30.0%
GAATGTTAATTTCCATGTGA+GGG - Chr3:997788-997807 MsG0380011530.01.T01:intron 30.0%
GAGCTAAATTTACGATAGAA+TGG - Chr3:997389-997408 MsG0380011530.01.T01:intron 30.0%
GAGTTGGAAACAATAAAAGA+GGG + Chr3:997541-997560 None:intergenic 30.0%
GCAATGAATAACATACAAGA+TGG - Chr3:997954-997973 MsG0380011530.01.T01:intron 30.0%
GGAAAAGGATTTCTTATCAT+GGG + Chr3:998141-998160 None:intergenic 30.0%
GTTAGTTATGCTAGAATTTG+TGG - Chr3:995658-995677 MsG0380011530.01.T01:three_prime_UTR 30.0%
TAAACACACTTTACATGTTG+TGG + Chr3:998864-998883 None:intergenic 30.0%
TAAATAATGTCAATGACGGT+TGG - Chr3:995750-995769 MsG0380011530.01.T01:three_prime_UTR 30.0%
TAGGTTTGGATTTGAGAAAA+GGG - Chr3:996322-996341 MsG0380011530.01.T01:CDS 30.0%
TCCATTTACAAGAAGAAAGA+AGG - Chr3:998292-998311 MsG0380011530.01.T01:CDS 30.0%
TTCATGTATCAAACAGATGA+AGG - Chr3:996997-997016 MsG0380011530.01.T01:intron 30.0%
TTCCATCTTGACAAAATTCA+TGG + Chr3:998729-998748 None:intergenic 30.0%
TTCTCTCAATACAATAACGA+TGG + Chr3:996870-996889 None:intergenic 30.0%
TTTGTCAAGATGGAAACTTT+GGG - Chr3:998734-998753 MsG0380011530.01.T01:intron 30.0%
! AACCATGAATTTTGTCAAGA+TGG - Chr3:998724-998743 MsG0380011530.01.T01:intron 30.0%
! AATTGATATAAGTGTTGCTG+CGG - Chr3:996664-996683 MsG0380011530.01.T01:CDS 30.0%
! CTTTGGAGAATTAAAAGTAG+GGG - Chr3:997026-997045 MsG0380011530.01.T01:intron 30.0%
! GTTCATGTATTTTATGTCCA+TGG - Chr3:997417-997436 MsG0380011530.01.T01:intron 30.0%
! TAGCTTGTGATATTTGTGTT+TGG - Chr3:999036-999055 MsG0380011530.01.T01:intron 30.0%
! TGAGTTGGAAACAATAAAAG+AGG + Chr3:997542-997561 None:intergenic 30.0%
! TTTTGTCAAGATGGAAACTT+TGG - Chr3:998733-998752 MsG0380011530.01.T01:intron 30.0%
!! AAGTTTAACGATAAGTTGGT+AGG - Chr3:996912-996931 MsG0380011530.01.T01:intron 30.0%
!! AGTTTAACGATAAGTTGGTA+GGG - Chr3:996913-996932 MsG0380011530.01.T01:intron 30.0%
!! TTGCATTATTTTATGCTTCG+GGG - Chr3:998762-998781 MsG0380011530.01.T01:CDS 30.0%
!! TTTTATTCTAGAGACAGCAA+GGG + Chr3:997239-997258 None:intergenic 30.0%
!! TTTTTATTCTAGAGACAGCA+AGG + Chr3:997240-997259 None:intergenic 30.0%
!!! ATTTTTTCGACCTATTCTGA+AGG - Chr3:997712-997731 MsG0380011530.01.T01:intron 30.0%
!!! TTTTTTCGACCTATTCTGAA+GGG - Chr3:997713-997732 MsG0380011530.01.T01:intron 30.0%
AATAATGGTAGGCTACTAAC+CGG + Chr3:996792-996811 None:intergenic 35.0%
ACAGATGAAGGCTATATCTT+TGG - Chr3:997009-997028 MsG0380011530.01.T01:intron 35.0%
AGTTATAGTGAAGGAAGAGA+AGG + Chr3:996167-996186 None:intergenic 35.0%
AGTTTGTATGTCTATCAGTC+TGG - Chr3:998431-998450 MsG0380011530.01.T01:CDS 35.0%
ATACGAGAAAGAGACAACAA+GGG + Chr3:997598-997617 None:intergenic 35.0%
ATATTTCCCCTAAACCTTGA+AGG + Chr3:996940-996959 None:intergenic 35.0%
ATTCAACAATGGAAAGTCCA+TGG - Chr3:998474-998493 MsG0380011530.01.T01:CDS 35.0%
ATTGTTAAGGATTTCAAGGC+TGG - Chr3:996638-996657 MsG0380011530.01.T01:CDS 35.0%
CAAAATATTGTCTGGATGCA+AGG + Chr3:997138-997157 None:intergenic 35.0%
CAATAAAAGAGGGAATCCTA+AGG + Chr3:997531-997550 None:intergenic 35.0%
CAATAACCAGATTACTCAAC+TGG + Chr3:999007-999026 None:intergenic 35.0%
CTATCAAGACAGTTCTTATC+AGG + Chr3:997456-997475 None:intergenic 35.0%
CTGGGTTACATATTCAACAA+TGG - Chr3:998463-998482 MsG0380011530.01.T01:CDS 35.0%
CTTTAGACATCTACACTATG+AGG - Chr3:998970-998989 MsG0380011530.01.T01:intron 35.0%
GAGAAGTGAGTGTAAGATTA+AGG - Chr3:996885-996904 MsG0380011530.01.T01:intron 35.0%
GATAGTTTCCTGTGAAACTT+TGG - Chr3:997471-997490 MsG0380011530.01.T01:intron 35.0%
GCCGTAAATAATGTCAATGA+CGG - Chr3:995746-995765 MsG0380011530.01.T01:three_prime_UTR 35.0%
GCTTTCAATAGCAATATTGG+TGG + Chr3:997645-997664 None:intergenic 35.0%
GGTGTATGGTTTCAACATTA+GGG - Chr3:999124-999143 MsG0380011530.01.T01:intron 35.0%
GGTGTGATTCGATATTTCTT+TGG + Chr3:996752-996771 None:intergenic 35.0%
GTAGGTTTGGATTTGAGAAA+AGG - Chr3:996321-996340 MsG0380011530.01.T01:CDS 35.0%
GTCTATCAGTCTGGAAATTT+GGG - Chr3:998440-998459 MsG0380011530.01.T01:CDS 35.0%
TAGGGGCCTTAAACAAAATT+TGG + Chr3:996045-996064 None:intergenic 35.0%
TATACGAGAAAGAGACAACA+AGG + Chr3:997599-997618 None:intergenic 35.0%
TCGATATTTCTTTGGCAAGA+AGG + Chr3:996744-996763 None:intergenic 35.0%
TGAGTGTCAAATGAATCCTA+AGG + Chr3:997202-997221 None:intergenic 35.0%
TGGTGTATGGTTTCAACATT+AGG - Chr3:999123-999142 MsG0380011530.01.T01:intron 35.0%
TGTCATTGTTGTGATACACA+GGG - Chr3:997928-997947 MsG0380011530.01.T01:intron 35.0%
TGTCTATCAGTCTGGAAATT+TGG - Chr3:998439-998458 MsG0380011530.01.T01:CDS 35.0%
TGTGTTTCATGGTAAGAATG+AGG - Chr3:996592-996611 MsG0380011530.01.T01:CDS 35.0%
TGTTGTGGATGAAAGATTGA+TGG + Chr3:998849-998868 None:intergenic 35.0%
TTGTCATTGTTGTGATACAC+AGG - Chr3:997927-997946 MsG0380011530.01.T01:intron 35.0%
! ATTAAGAGTGTACGAGTTGT+TGG - Chr3:996415-996434 MsG0380011530.01.T01:CDS 35.0%
! CCTTGGAGTGATAAACTTTT+CGG + Chr3:998181-998200 None:intergenic 35.0%
! TCATAGTTAGTCTCATCCTT+AGG - Chr3:997512-997531 MsG0380011530.01.T01:intron 35.0%
!! AGGGCATACGGATTTAATTT+TGG - Chr3:996709-996728 MsG0380011530.01.T01:CDS 35.0%
!! GGGCATACGGATTTAATTTT+GGG - Chr3:996710-996729 MsG0380011530.01.T01:CDS 35.0%
!! TGCATTATTTTATGCTTCGG+GGG - Chr3:998763-998782 MsG0380011530.01.T01:CDS 35.0%
AACAATGGAAAGTCCATGGA+AGG - Chr3:998478-998497 MsG0380011530.01.T01:CDS 40.0%
AAGATGAAGAAGCTCTCAGT+TGG - Chr3:996266-996285 MsG0380011530.01.T01:CDS 40.0%
ACAAAGTCAACAACCTTCCA+TGG + Chr3:998494-998513 None:intergenic 40.0%
AGCGGATATTTGATCATGAC+AGG - Chr3:998242-998261 MsG0380011530.01.T01:CDS 40.0%
AGCTATGCTGATGAAGGAAA+AGG + Chr3:998156-998175 None:intergenic 40.0%
AGGCTGAAAGAATTGATGCT+AGG - Chr3:996384-996403 MsG0380011530.01.T01:CDS 40.0%
AGTGAGGTAGATGTTACATC+GGG + Chr3:998617-998636 None:intergenic 40.0%
AGTGATTCATATTGCTTCCG+AGG - Chr3:998670-998689 MsG0380011530.01.T01:intron 40.0%
CAAGTCAAGTACACCTATGT+TGG + Chr3:998555-998574 None:intergenic 40.0%
CCGAAAAGTTTATCACTCCA+AGG - Chr3:998178-998197 MsG0380011530.01.T01:CDS 40.0%
CGGATATTTGATCATGACAG+GGG - Chr3:998244-998263 MsG0380011530.01.T01:CDS 40.0%
CTGTTGTGTCATGACATCTT+TGG - Chr3:995810-995829 MsG0380011530.01.T01:exon 40.0%
CTTTCTCCAGTTGAGTAATC+TGG - Chr3:998998-999017 MsG0380011530.01.T01:intron 40.0%
GAGAGCTTCTTCATCTTGAA+GGG + Chr3:996263-996282 None:intergenic 40.0%
GAGTGAGGTAGATGTTACAT+CGG + Chr3:998618-998637 None:intergenic 40.0%
GCGGATATTTGATCATGACA+GGG - Chr3:998243-998262 MsG0380011530.01.T01:CDS 40.0%
GCGTTATGAACACTCACATT+AGG - Chr3:997663-997682 MsG0380011530.01.T01:intron 40.0%
GGCTGAAAGAATTGATGCTA+GGG - Chr3:996385-996404 MsG0380011530.01.T01:CDS 40.0%
GTCATCGAAATCTAGATCTC+TGG + Chr3:998015-998034 None:intergenic 40.0%
GTCATTGTTGTGATACACAG+GGG - Chr3:997929-997948 MsG0380011530.01.T01:intron 40.0%
GTCGCTTCATGTAAAAGTTC+TGG - Chr3:998407-998426 MsG0380011530.01.T01:CDS 40.0%
TAGACATCTACACTATGAGG+TGG - Chr3:998973-998992 MsG0380011530.01.T01:intron 40.0%
TATATACGTTGTCACCGACA+AGG - Chr3:998529-998548 MsG0380011530.01.T01:CDS 40.0%
TGAGAGCTTCTTCATCTTGA+AGG + Chr3:996264-996283 None:intergenic 40.0%
TTTCCATGTGAGGGTGAAAA+TGG - Chr3:997797-997816 MsG0380011530.01.T01:intron 40.0%
! CAGGATACATTAGTTTCCCA+TGG + Chr3:997437-997456 None:intergenic 40.0%
! TACCATGTCTTGCTTGCTTT+TGG - Chr3:998359-998378 MsG0380011530.01.T01:CDS 40.0%
! TAGCAATATTGGTGGATGCT+AGG + Chr3:997637-997656 None:intergenic 40.0%
! TTAAGGCCCCTAGATTTGTT+GGG - Chr3:996053-996072 MsG0380011530.01.T01:CDS 40.0%
! TTTAAGGCCCCTAGATTTGT+TGG - Chr3:996052-996071 MsG0380011530.01.T01:CDS 40.0%
AAAGGAAAACGCCTACTTGC+TGG - Chr3:998940-998959 MsG0380011530.01.T01:intron 45.0%
ACACACCAGCGAATTGAAAG+AGG + Chr3:998037-998056 None:intergenic 45.0%
ACTCGTCTTCCCTTCAGAAT+AGG + Chr3:997725-997744 None:intergenic 45.0%
AGAGACAGCAAGGGAGAAAT+TGG + Chr3:997230-997249 None:intergenic 45.0%
AGAGGGAATGATCTGCTTCA+AGG - Chr3:996689-996708 MsG0380011530.01.T01:CDS 45.0%
AGAGTGTACGAGTTGTTGGA+CGG - Chr3:996419-996438 MsG0380011530.01.T01:CDS 45.0%
ATCAGTCTGGAAATTTGGGC+TGG - Chr3:998444-998463 MsG0380011530.01.T01:CDS 45.0%
CATCACAACTAACCATCCTG+AGG + Chr3:998640-998659 None:intergenic 45.0%
CCAAGGCGATCAATCAATTC+TGG - Chr3:998195-998214 MsG0380011530.01.T01:CDS 45.0%
CCAGAATTGATTGATCGCCT+TGG + Chr3:998198-998217 None:intergenic 45.0%
CTTTCAAAACCCCACCTTCT+CGG + Chr3:998812-998831 None:intergenic 45.0%
GAAGCATACCGTTGTATCTG+CGG + Chr3:996143-996162 None:intergenic 45.0%
GAGGGAATGATCTGCTTCAA+GGG - Chr3:996690-996709 MsG0380011530.01.T01:CDS 45.0%
GATGACCTCTTTCAATTCGC+TGG - Chr3:998029-998048 MsG0380011530.01.T01:intron 45.0%
GCAGCAGTTAAACGTAGGTT+TGG - Chr3:996308-996327 MsG0380011530.01.T01:CDS 45.0%
GCTAGAATTTGTGGACCACA+TGG - Chr3:995667-995686 MsG0380011530.01.T01:three_prime_UTR 45.0%
GGGACATAGTGAGTATGAGT+TGG + Chr3:997578-997597 None:intergenic 45.0%
GTAGGGTCCTTCAAGGTTTA+GGG - Chr3:996930-996949 MsG0380011530.01.T01:intron 45.0%
TAACATCTACCTCACTCCTC+AGG - Chr3:998621-998640 MsG0380011530.01.T01:intron 45.0%
TACTCGCAGCAGTTAAACGT+AGG - Chr3:996303-996322 MsG0380011530.01.T01:CDS 45.0%
TAGAACTCGAGTTCCTCCAA+AGG - Chr3:998922-998941 MsG0380011530.01.T01:intron 45.0%
TAGGGTCCTTCAAGGTTTAG+GGG - Chr3:996931-996950 MsG0380011530.01.T01:intron 45.0%
TCAGTCTGGAAATTTGGGCT+GGG - Chr3:998445-998464 MsG0380011530.01.T01:CDS 45.0%
TGCCAAAAGCAAGCAAGACA+TGG + Chr3:998364-998383 None:intergenic 45.0%
TGGCTAAACCACATTGTCGT+GGG - Chr3:995780-995799 MsG0380011530.01.T01:three_prime_UTR 45.0%
TGGTGTGTGCAAGAATTGGA+GGG - Chr3:998049-998068 MsG0380011530.01.T01:CDS 45.0%
TTCTGGCACGTTGCTTATTC+TGG - Chr3:998212-998231 MsG0380011530.01.T01:CDS 45.0%
TTGGCTAAACCACATTGTCG+TGG - Chr3:995779-995798 MsG0380011530.01.T01:three_prime_UTR 45.0%
TTTCAAAACCCCACCTTCTC+GGG + Chr3:998811-998830 None:intergenic 45.0%
! AAAACGCCTACTTGCTGGAT+TGG - Chr3:998945-998964 MsG0380011530.01.T01:intron 45.0%
! AAAGCACCAATCCAGCAAGT+AGG + Chr3:998954-998973 None:intergenic 45.0%
! AAGTAGGCGTTTTCCTTTGG+AGG + Chr3:998938-998957 None:intergenic 45.0%
! AGCAAGTAGGCGTTTTCCTT+TGG + Chr3:998941-998960 None:intergenic 45.0%
! AGTTTAGGTGAGTTGAGCTC+CGG + Chr3:995893-995912 None:intergenic 45.0%
! CTCAGGATGGTTAGTTGTGA+TGG - Chr3:998638-998657 MsG0380011530.01.T01:intron 45.0%
! GACGATGATGACGAACTACA+AGG - Chr3:996518-996537 MsG0380011530.01.T01:CDS 45.0%
! GCTTATTCTGGCTGTTCTAG+CGG - Chr3:998224-998243 MsG0380011530.01.T01:CDS 45.0%
! GGATGAGAAGTATGCTGAGT+TGG + Chr3:997557-997576 None:intergenic 45.0%
! TGATCTGCTTCAAGGGCATA+CGG - Chr3:996697-996716 MsG0380011530.01.T01:CDS 45.0%
!! GTCTTGCTTGCTTTTGGCAA+AGG - Chr3:998365-998384 MsG0380011530.01.T01:CDS 45.0%
!! TAAGTTGGTAGGGTCCTTCA+AGG - Chr3:996923-996942 MsG0380011530.01.T01:intron 45.0%
!! TACACCTATGTTGGCCTTGT+CGG + Chr3:998546-998565 None:intergenic 45.0%
!! TAGCCATTTTCACCCTCACA+TGG + Chr3:997803-997822 None:intergenic 45.0%
AACTTTGCCCTCATGTGTGC+CGG - Chr3:995871-995890 MsG0380011530.01.T01:CDS 50.0%
ACTAACCATCCTGAGGAGTG+AGG + Chr3:998633-998652 None:intergenic 50.0%
ATCTACCTCACTCCTCAGGA+TGG - Chr3:998625-998644 MsG0380011530.01.T01:intron 50.0%
ATGCATTGAGCAACCCGAGA+AGG - Chr3:998795-998814 MsG0380011530.01.T01:intron 50.0%
ATTGAGCAACCCGAGAAGGT+GGG - Chr3:998799-998818 MsG0380011530.01.T01:intron 50.0%
CTGGTGTGTGCAAGAATTGG+AGG - Chr3:998048-998067 MsG0380011530.01.T01:CDS 50.0%
GAGTTGAACCCACGACAATG+TGG + Chr3:995791-995810 None:intergenic 50.0%
GGTAGGGTCCTTCAAGGTTT+AGG - Chr3:996929-996948 MsG0380011530.01.T01:intron 50.0%
TCATCGTCGTCACGATCCAA+TGG + Chr3:996506-996525 None:intergenic 50.0%
TCGCTGGTGTGTGCAAGAAT+TGG - Chr3:998045-998064 MsG0380011530.01.T01:intron 50.0%
TCGGTCAGCTATGCTGATGA+AGG + Chr3:998162-998181 None:intergenic 50.0%
! ATAAGTGTTGCTGCGGCAAG+AGG - Chr3:996671-996690 MsG0380011530.01.T01:CDS 50.0%
! CAATGACGGTTGGCTGAAGT+TGG - Chr3:995760-995779 MsG0380011530.01.T01:three_prime_UTR 50.0%
! TAACCGGTGTCAAGCTGAAC+TGG + Chr3:996776-996795 None:intergenic 50.0%
! TAAGTGTTGCTGCGGCAAGA+GGG - Chr3:996672-996691 MsG0380011530.01.T01:CDS 50.0%
! TGCTTTTGGCAAAGGCTCAG+AGG - Chr3:998373-998392 MsG0380011530.01.T01:CDS 50.0%
AGCCGGCCCAACAAATCTAG+GGG + Chr3:996062-996081 None:intergenic 55.0%
CATTGAGCAACCCGAGAAGG+TGG - Chr3:998798-998817 MsG0380011530.01.T01:intron 55.0%
CCTCCAGTTCAGCTTGACAC+CGG - Chr3:996770-996789 MsG0380011530.01.T01:CDS 55.0%
CGGCGACAGAGCTGAAATGA+GGG + Chr3:996123-996142 None:intergenic 55.0%
CTCTGTCGCCGCAGATACAA+CGG - Chr3:996132-996151 MsG0380011530.01.T01:CDS 55.0%
GAGCCGGCCCAACAAATCTA+GGG + Chr3:996063-996082 None:intergenic 55.0%
GTCACCGACAAGGCCAACAT+AGG - Chr3:998539-998558 MsG0380011530.01.T01:CDS 55.0%
TTGAGCAACCCGAGAAGGTG+GGG - Chr3:998800-998819 MsG0380011530.01.T01:intron 55.0%
TTGAGCTCCGGCACACATGA+GGG + Chr3:995881-995900 None:intergenic 55.0%
!! CTAGATTTGTTGGGCCGGCT+CGG - Chr3:996062-996081 MsG0380011530.01.T01:CDS 55.0%
AGTCGGGTTCATCACCGAGC+CGG + Chr3:996079-996098 None:intergenic 60.0%
CGAGCCGGCCCAACAAATCT+AGG + Chr3:996064-996083 None:intergenic 60.0%
GCGGCGACAGAGCTGAAATG+AGG + Chr3:996124-996143 None:intergenic 60.0%
GTTGAGCTCCGGCACACATG+AGG + Chr3:995882-995901 None:intergenic 60.0%
! CCGGTGTCAAGCTGAACTGG+AGG + Chr3:996773-996792 None:intergenic 60.0%
!! GGCCCCTAGATTTGTTGGGC+CGG - Chr3:996057-996076 MsG0380011530.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 995640 999198 995640 ID=MsG0380011530.01;Name=MsG0380011530.01
Chr3 mRNA 995640 999198 995640 ID=MsG0380011530.01.T01;Parent=MsG0380011530.01;Name=MsG0380011530.01.T01;_AED=0.45;_eAED=0.47;_QI=0|0.33|0.5|1|0.33|0.5|4|183|567
Chr3 exon 995640 996889 995640 ID=MsG0380011530.01.T01:exon:665;Parent=MsG0380011530.01.T01
Chr3 exon 998047 998582 998047 ID=MsG0380011530.01.T01:exon:664;Parent=MsG0380011530.01.T01
Chr3 exon 998755 998806 998755 ID=MsG0380011530.01.T01:exon:663;Parent=MsG0380011530.01.T01
Chr3 exon 999150 999198 999150 ID=MsG0380011530.01.T01:exon:662;Parent=MsG0380011530.01.T01
Chr3 CDS 999150 999198 999150 ID=MsG0380011530.01.T01:cds;Parent=MsG0380011530.01.T01
Chr3 CDS 998755 998806 998755 ID=MsG0380011530.01.T01:cds;Parent=MsG0380011530.01.T01
Chr3 CDS 998047 998582 998047 ID=MsG0380011530.01.T01:cds;Parent=MsG0380011530.01.T01
Chr3 CDS 995823 996889 995823 ID=MsG0380011530.01.T01:cds;Parent=MsG0380011530.01.T01
Chr3 three_prime_UTR 995640 995822 995640 ID=MsG0380011530.01.T01:three_prime_utr;Parent=MsG0380011530.01.T01
Gene Sequence

>MsG0380011530.01.T01

ATGAATTTCAACATTTTTGTTAGTTATGCTAGAATTTGTGGACCACATGGGCCTCATTTCCAAATTTTGTTTAAGGCCCCTAGATTTGTTGGGCCGGCTCGAACTCCCTTCAAGATGAAGAAGCTCTCAGTTGGTGATGCATTATCGTTACTCGCAGCAGTTAAACGTAGGTTTGGATTTGAGAAAAGGGAAAAATATGGATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAAGAATTGATGCTAGGGATGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTCGAAATTCAACATCTTCTTGCCAACTGAATATGAAATCAAACTTCCATTGGATCGTGACGACGATGATGACGAACTACAAGGTCATATGTTAGAGACAAAAGATGCATTTGCATTTCTCGAGAAAGTAAAAGATGTGTTTCATGGTAAGAATGAGGAAAAGTATAATGAGTTTTTAAAAATTGTTAAGGATTTCAAGGCTGGAAGAATTGATATAAGTGTTGCTGCGGCAAGAGGGAATGATCTGCTTCAAGGGCATACGGATTTAATTTTGGGATTCAACGCCTTCTTGCCAAAGAAATATCGAATCACACCTCCAGTTCAGCTTGACACCGGGGAAGCAATGAATAACATACAAGATGGTTGTAAAATTTCTTGGGATATGCTTGATCTCATTTCCAGAGATCTAGATTTCGATGACCTCTTTCAATTCGCTGGTGTGTGCAAGAATTGGAGGGAATTTCATAAAACTTATTGGAAAAAGTTCTTGGCATTCCAAGAACCATTACTTATTCAAAAGTCTTCCCATGATAAGAAATCCTTTTCCTTCATCAGCATAGCTGACCGAAAAGTTTATCACTCCAAGGCGATCAATCAATTCTGGCACGTTGCTTATTCTGGCTGTTCTAGCGGATATTTGATCATGACAGGGGACAATAATTCTTTTCTTCTATTGAATCCATTTACAAGAAGAAAGAAGGTAATCAATACATCAACCTTTAAAGTCAATTCTTCTTATTTTGCTTACCATGTCTTGCTTGCTTTTGGCAAAGGCTCAGAGGAATTTGTCTTAGTCGCTTCATGTAAAAGTTCTGGTAGTTTGTATGTCTATCAGTCTGGAAATTTGGGCTGGGTTACATATTCAACAATGGAAAGTCCATGGAAGGTTGTTGACTTTGTTGTTTTGCATCATACTATATACGTTGTCACCGACAAGGCCAACATAGGTGTACTTGACTTGAATTCCACAGATATAAAATTTTTAGAACTGAAGAGTACACCCGATGTAACATCTACCTCACTCCTCAGGATGGTTAGTTGTGATGGACAACTTTTAGTGATTCATATTGCTTCCGAGGAAATATTGAATGTTTACAAGATAGACTTCTCAACCATGAATTTTGTCAAGATGGAAACTTTGGGTGACATTGCATTATTTTATGCTTCGGGGGAATACTTCTATGCATTGAGCAACCCGAGAAGGTGGGGTTTTGAAAGCAACTCTTTGTATGCCATCAATCTTTCATCCACAACATGTAAAGTGTGTTTAGGGGATGATAACGAACTGCCAAAATACATTAAGCATGATAGAACTCGAGTTCCTCCAAAGGAAAACGCCTACTTGCTGGATTGGTGCTTTAGACATCTACACTATGAGGTGGATCTTTCTCCAGTTGAGTAA
Protein sequence

>MsG0380011530.01.T01

MNFNIFVSYARICGPHGPHFQILFKAPRFVGPARTPFKMKKLSVGDALSLLAAVKRRFGFEKREKYGSFLQIMKDFKAERIDARDVKLRVYELLDGHEDLISKFNIFLPTEYEIKLPLDRDDDDDELQGHMLETKDAFAFLEKVKDVFHGKNEEKYNEFLKIVKDFKAGRIDISVAAARGNDLLQGHTDLILGFNAFLPKKYRITPPVQLDTGEAMNNIQDGCKISWDMLDLISRDLDFDDLFQFAGVCKNWREFHKTYWKKFLAFQEPLLIQKSSHDKKSFSFISIADRKVYHSKAINQFWHVAYSGCSSGYLIMTGDNNSFLLLNPFTRRKKVINTSTFKVNSSYFAYHVLLAFGKGSEEFVLVASCKSSGSLYVYQSGNLGWVTYSTMESPWKVVDFVVLHHTIYVVTDKANIGVLDLNSTDIKFLELKSTPDVTSTSLLRMVSCDGQLLVIHIASEEILNVYKIDFSTMNFVKMETLGDIALFYASGEYFYALSNPRRWGFESNSLYAINLSSTTCKVCLGDDNELPKYIKHDRTRVPPKENAYLLDWCFRHLHYEVDLSPVE*