Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013125.01.T01 | RHN66541.1 | 85.33 | 409 | 36 | 3 | 29 | 419 | 1 | 403 | 0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013125.01.T01 | P93755 | 49.711 | 346 | 119 | 11 | 40 | 338 | 96 | 433 | 4.87E-88 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013125.01.T01 | A0A396IP67 | 85.330 | 409 | 36 | 3 | 29 | 419 | 1 | 403 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380013125.01.T01 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013125.01.T01 | MTR_3g435680 | 85.075 | 402 | 36 | 3 | 36 | 419 | 1 | 396 | 0.0 | 687 |
| MsG0380013125.01.T01 | MTR_3g435590 | 62.590 | 417 | 92 | 8 | 40 | 419 | 80 | 469 | 5.72e-172 | 489 |
| MsG0380013125.01.T01 | MTR_3g029590 | 59.113 | 406 | 84 | 12 | 40 | 367 | 93 | 494 | 2.60e-136 | 407 |
| MsG0380013125.01.T01 | MTR_3g029590 | 41.791 | 134 | 49 | 4 | 314 | 418 | 548 | 681 | 5.85e-19 | 89.7 |
| MsG0380013125.01.T01 | MTR_7g092070 | 47.044 | 406 | 131 | 13 | 40 | 367 | 95 | 494 | 2.71e-97 | 306 |
| MsG0380013125.01.T01 | MTR_7g092070 | 65.306 | 49 | 17 | 0 | 370 | 418 | 627 | 675 | 3.46e-14 | 75.1 |
| MsG0380013125.01.T01 | MTR_1g050438 | 41.237 | 388 | 162 | 10 | 40 | 362 | 64 | 450 | 3.14e-86 | 274 |
| MsG0380013125.01.T01 | MTR_0728s0020 | 41.237 | 388 | 162 | 10 | 40 | 362 | 80 | 466 | 7.55e-86 | 274 |
| MsG0380013125.01.T01 | MTR_5g082830 | 41.813 | 342 | 135 | 12 | 33 | 338 | 85 | 398 | 3.26e-70 | 234 |
| MsG0380013125.01.T01 | MTR_5g071070 | 45.098 | 255 | 107 | 6 | 137 | 358 | 115 | 369 | 5.09e-68 | 227 |
| MsG0380013125.01.T01 | MTR_5g071070 | 44.706 | 255 | 108 | 6 | 137 | 358 | 197 | 451 | 3.17e-67 | 227 |
| MsG0380013125.01.T01 | MTR_1g075890 | 66.187 | 139 | 45 | 1 | 147 | 283 | 206 | 344 | 5.87e-64 | 217 |
| MsG0380013125.01.T01 | MTR_3g070880 | 39.384 | 292 | 143 | 5 | 70 | 353 | 75 | 340 | 1.51e-62 | 210 |
| MsG0380013125.01.T01 | MTR_8g102100 | 63.559 | 118 | 43 | 0 | 164 | 281 | 77 | 194 | 1.15e-49 | 172 |
| MsG0380013125.01.T01 | MTR_6g090380 | 68.224 | 107 | 34 | 0 | 164 | 270 | 99 | 205 | 2.05e-48 | 169 |
| MsG0380013125.01.T01 | MTR_3g464260 | 34.615 | 338 | 123 | 11 | 147 | 418 | 183 | 488 | 9.94e-48 | 171 |
| MsG0380013125.01.T01 | MTR_3g103960 | 52.817 | 142 | 59 | 4 | 163 | 302 | 48 | 183 | 5.24e-46 | 160 |
| MsG0380013125.01.T01 | MTR_2g090605 | 60.360 | 111 | 44 | 0 | 168 | 278 | 77 | 187 | 1.08e-43 | 157 |
| MsG0380013125.01.T01 | MTR_4g078660 | 58.879 | 107 | 44 | 0 | 164 | 270 | 56 | 162 | 1.88e-42 | 152 |
| MsG0380013125.01.T01 | MTR_3g464270 | 44.828 | 174 | 85 | 3 | 167 | 339 | 8 | 171 | 1.44e-41 | 150 |
| MsG0380013125.01.T01 | MTR_3g464290 | 55.208 | 96 | 40 | 2 | 149 | 241 | 79 | 174 | 3.22e-30 | 122 |
| MsG0380013125.01.T01 | MTR_3g464280 | 34.874 | 238 | 89 | 6 | 51 | 279 | 85 | 265 | 6.99e-29 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013125.01.T01 | AT2G41900 | 49.711 | 346 | 119 | 11 | 40 | 338 | 96 | 433 | 4.97e-89 | 285 |
| MsG0380013125.01.T01 | AT5G12850 | 45.584 | 351 | 137 | 10 | 40 | 338 | 89 | 437 | 1.82e-79 | 259 |
| MsG0380013125.01.T01 | AT5G58620 | 54.167 | 216 | 78 | 6 | 147 | 346 | 186 | 396 | 1.20e-70 | 234 |
| MsG0380013125.01.T01 | AT2G40140 | 56.000 | 175 | 72 | 3 | 151 | 321 | 195 | 368 | 7.32e-63 | 213 |
| MsG0380013125.01.T01 | AT2G40140 | 56.000 | 175 | 72 | 3 | 151 | 321 | 195 | 368 | 7.32e-63 | 213 |
| MsG0380013125.01.T01 | AT3G55980 | 41.772 | 316 | 155 | 10 | 40 | 335 | 78 | 384 | 1.01e-62 | 212 |
| MsG0380013125.01.T01 | AT3G55980 | 41.772 | 316 | 155 | 10 | 40 | 335 | 145 | 451 | 4.53e-62 | 212 |
| MsG0380013125.01.T01 | AT2G25900 | 66.355 | 107 | 36 | 0 | 164 | 270 | 86 | 192 | 1.16e-49 | 171 |
| MsG0380013125.01.T01 | AT2G25900 | 66.355 | 107 | 36 | 0 | 164 | 270 | 86 | 192 | 1.16e-49 | 171 |
| MsG0380013125.01.T01 | AT1G03790 | 52.174 | 161 | 71 | 3 | 127 | 283 | 43 | 201 | 1.03e-46 | 165 |
| MsG0380013125.01.T01 | AT4G29190 | 56.061 | 132 | 57 | 1 | 150 | 280 | 60 | 191 | 1.13e-46 | 164 |
| MsG0380013125.01.T01 | AT2G19810 | 63.551 | 107 | 39 | 0 | 164 | 270 | 74 | 180 | 1.82e-45 | 161 |
| MsG0380013125.01.T01 | AT5G07500 | 56.897 | 116 | 50 | 0 | 155 | 270 | 39 | 154 | 2.36e-44 | 155 |
| MsG0380013125.01.T01 | AT5G44260 | 58.871 | 124 | 48 | 2 | 148 | 270 | 42 | 163 | 7.11e-43 | 155 |
Find 100 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTAACTCCTGGTCTAAA+TGG | 0.200828 | 3:-30872556 | MsG0380013125.01.T01:CDS |
| CCTTTATCATCTGCTGAAAA+TGG | 0.235234 | 3:-30873298 | MsG0380013125.01.T01:CDS |
| TGGCCAGCTCTTCACTTTCC+AGG | 0.289536 | 3:-30872677 | MsG0380013125.01.T01:CDS |
| TTCTCATAAGGATGGTAAAA+AGG | 0.298159 | 3:+30873088 | None:intergenic |
| TCTAAATGGGGTTCCAATAC+TGG | 0.304870 | 3:-30872542 | MsG0380013125.01.T01:CDS |
| TCTTGGAACATATTTCTTCC+TGG | 0.335210 | 3:+30872659 | None:intergenic |
| CATTTAGACCAGGAGTTAAC+AGG | 0.344738 | 3:+30872557 | None:intergenic |
| TTATCACCTGGGGCTGATAT+CGG | 0.348736 | 3:-30873340 | MsG0380013125.01.T01:CDS |
| GCAGCATTTACACCAGCTTC+TGG | 0.350362 | 3:+30873487 | None:intergenic |
| CACTGAAATGGCACCAGGAC+GGG | 0.356573 | 3:+30872586 | None:intergenic |
| ACCAAAGTCATTTCCGTTAA+CGG | 0.357126 | 3:+30872505 | None:intergenic |
| GATCCAGTGGACACATATAT+TGG | 0.363755 | 3:+30872848 | None:intergenic |
| TATCTTAGTTGAGAATAGAT+TGG | 0.376314 | 3:+30872417 | None:intergenic |
| CCGTTTGCATATGGAGATAA+AGG | 0.378114 | 3:+30872722 | None:intergenic |
| GTTAAGGCTGCTGATGCTGC+TGG | 0.383409 | 3:-30873442 | MsG0380013125.01.T01:CDS |
| GTGAAGAGCCTGATCTATCT+TGG | 0.390741 | 3:-30872442 | MsG0380013125.01.T01:CDS |
| CCAATACTGGAAAACTTGAT+TGG | 0.395651 | 3:-30872529 | MsG0380013125.01.T01:CDS |
| AGCTGTAGGCGAACTTTCTA+AGG | 0.397207 | 3:+30873050 | None:intergenic |
| TGTTAACTCCTGGTCTAAAT+GGG | 0.401435 | 3:-30872555 | MsG0380013125.01.T01:CDS |
| AGGAGCAGATGCAGCTGATC+GGG | 0.402058 | 3:+30872811 | None:intergenic |
| TGATGCTGATTCAAGTGGTT+TGG | 0.404621 | 3:-30873464 | MsG0380013125.01.T01:CDS |
| TCATCTTCATCTGCGGTAGA+AGG | 0.405205 | 3:-30873616 | MsG0380013125.01.T01:CDS |
| ACTTTAAATGTTTCACCGTC+AGG | 0.408929 | 3:-30873511 | MsG0380013125.01.T01:CDS |
| TTCACAATTTCGAGCTTATG+AGG | 0.414701 | 3:+30873385 | None:intergenic |
| AGAATGGTGCGATACCGATC+TGG | 0.414981 | 3:+30872938 | None:intergenic |
| GGAGAGATGCCGTTTGCATA+TGG | 0.429891 | 3:+30872713 | None:intergenic |
| AAACTTGATTGGTCCGTTAA+CGG | 0.434602 | 3:-30872518 | MsG0380013125.01.T01:CDS |
| ATTGTGAAAACAAGTCTTGA+AGG | 0.440368 | 3:-30873370 | MsG0380013125.01.T01:CDS |
| GCAGCCATGTCCATGACATT+AGG | 0.442851 | 3:+30872791 | None:intergenic |
| TCTACACTAGGAAGTGCAAT+TGG | 0.451987 | 3:+30873202 | None:intergenic |
| CTCCTTCGAGCATTCTCATA+AGG | 0.454231 | 3:+30873076 | None:intergenic |
| TGATTCAAGTGGTTTGGTTA+AGG | 0.456096 | 3:-30873458 | MsG0380013125.01.T01:CDS |
| TCAATCGTGGATGCTTCCTA+TGG | 0.460445 | 3:-30873544 | MsG0380013125.01.T01:CDS |
| GGAGATAAAGGCAGTGCAAA+AGG | 0.462149 | 3:+30872734 | None:intergenic |
| ACAGCTGTGTCGGTAAACTT+TGG | 0.463128 | 3:+30873253 | None:intergenic |
| AACAGGTCGGCTCACTGAAA+TGG | 0.465830 | 3:+30872574 | None:intergenic |
| ATCGTGCATACTCTCATGAT+TGG | 0.468172 | 3:-30873120 | MsG0380013125.01.T01:CDS |
| TGTTTCTCACAGCCCCGTCC+TGG | 0.471928 | 3:-30872599 | MsG0380013125.01.T01:CDS |
| GAAAACAAGTCTTGAAGGAC+TGG | 0.473587 | 3:-30873365 | MsG0380013125.01.T01:CDS |
| GCTGGCCAAGCATTATTTGA+AGG | 0.478194 | 3:+30872692 | None:intergenic |
| AGTACCATCTTTGCAGAGAA+TGG | 0.480755 | 3:+30872922 | None:intergenic |
| GATGAAGATGACGAAATTGA+AGG | 0.481890 | 3:+30873628 | None:intergenic |
| AATATGTTCCAAGACATTCA+TGG | 0.483668 | 3:-30872650 | MsG0380013125.01.T01:CDS |
| CGCACCATTCTCTGCAAAGA+TGG | 0.486710 | 3:-30872926 | MsG0380013125.01.T01:CDS |
| ATTGTTTCCATGCTCAAAAG+AGG | 0.495896 | 3:+30872466 | None:intergenic |
| CTTCCTGGAAAGTGAAGAGC+TGG | 0.497956 | 3:+30872674 | None:intergenic |
| TTGGTAGCAAACCACGATAA+AGG | 0.498466 | 3:+30872759 | None:intergenic |
| TCCGTTAACGGAAATGACTT+TGG | 0.499356 | 3:-30872506 | MsG0380013125.01.T01:CDS |
| ACTGAAATGGCACCAGGACG+GGG | 0.501239 | 3:+30872587 | None:intergenic |
| CTCATGGACTATTCGAGACC+TGG | 0.504397 | 3:-30872967 | MsG0380013125.01.T01:CDS |
| GATGCAGCTGATCGGGGTAA+AGG | 0.505671 | 3:+30872818 | None:intergenic |
| TGAAGAGCCTGATCTATCTT+GGG | 0.506674 | 3:-30872441 | MsG0380013125.01.T01:CDS |
| ATACCGATCTGGGTGTAGCC+AGG | 0.517913 | 3:+30872949 | None:intergenic |
| GATAATTGTGAATTTGCTCA+TGG | 0.522724 | 3:-30872983 | MsG0380013125.01.T01:CDS |
| GATTGGACCCAAGATAGATC+AGG | 0.523337 | 3:+30872434 | None:intergenic |
| TTTGGAGCCACAGGAGAGGA+TGG | 0.530352 | 3:+30873271 | None:intergenic |
| CCTTTATCTCCATATGCAAA+CGG | 0.530866 | 3:-30872722 | MsG0380013125.01.T01:CDS |
| TCACCGTCAGGTCCAGAAGC+TGG | 0.531366 | 3:-30873499 | MsG0380013125.01.T01:CDS |
| TAAAGTATCAATACTCCCAT+AGG | 0.532097 | 3:+30873528 | None:intergenic |
| CGGCTCACTGAAATGGCACC+AGG | 0.533049 | 3:+30872581 | None:intergenic |
| AAAGGCAGTGCAAAAGGAGT+TGG | 0.533658 | 3:+30872740 | None:intergenic |
| CGTCCAATATATGTGTCCAC+TGG | 0.540039 | 3:-30872851 | MsG0380013125.01.T01:CDS |
| GCTGCTGACCATGAATGTCT+TGG | 0.541101 | 3:+30872642 | None:intergenic |
| TCGGTAAACTTTGGAGCCAC+AGG | 0.542025 | 3:+30873262 | None:intergenic |
| TCAGTTAATTGAAAGATGTA+CGG | 0.542243 | 3:-30873673 | None:intergenic |
| TAGGAGCAGATGCAGCTGAT+CGG | 0.547990 | 3:+30872810 | None:intergenic |
| TCTCTCCTTCAAATAATGCT+TGG | 0.548783 | 3:-30872697 | MsG0380013125.01.T01:CDS |
| GAATGGTGCGATACCGATCT+GGG | 0.555264 | 3:+30872939 | None:intergenic |
| GATAAAGGGGCAGCTGAATG+AGG | 0.558379 | 3:+30873313 | None:intergenic |
| CAATCGTGGATGCTTCCTAT+GGG | 0.569230 | 3:-30873543 | MsG0380013125.01.T01:CDS |
| TGAGCCGACCTGTTAACTCC+TGG | 0.570712 | 3:-30872565 | MsG0380013125.01.T01:CDS |
| TCACTGAAATGGCACCAGGA+CGG | 0.575540 | 3:+30872585 | None:intergenic |
| AGGGCATGGCACACAGCTGT+AGG | 0.579245 | 3:+30873036 | None:intergenic |
| TTCGAGCATTCTCATAAGGA+TGG | 0.587046 | 3:+30873080 | None:intergenic |
| TGCATCTGCTCCTAATGTCA+TGG | 0.589356 | 3:-30872801 | MsG0380013125.01.T01:CDS |
| TGGTACTAGTTGTGACCGAA+AGG | 0.594642 | 3:-30872906 | MsG0380013125.01.T01:CDS |
| TGTAGAATTAACAGCTGTGT+CGG | 0.595082 | 3:+30873243 | None:intergenic |
| CCACGATTGAATCCGCCATA+CGG | 0.597617 | 3:+30873557 | None:intergenic |
| TGCTCCTAATGTCATGGACA+TGG | 0.600640 | 3:-30872795 | MsG0380013125.01.T01:CDS |
| GCTGCTGATGCTGATTCAAG+TGG | 0.611062 | 3:-30873469 | MsG0380013125.01.T01:CDS |
| ATTGGAACCCCATTTAGACC+AGG | 0.611618 | 3:+30872547 | None:intergenic |
| AGACCTGGCTACACCCAGAT+CGG | 0.613127 | 3:-30872952 | MsG0380013125.01.T01:CDS |
| TACATGCTGCTTTCTACACT+AGG | 0.613651 | 3:+30873190 | None:intergenic |
| CCGTATGGCGGATTCAATCG+TGG | 0.626745 | 3:-30873557 | MsG0380013125.01.T01:CDS |
| ACACCAGCTTCTGGACCTGA+CGG | 0.627616 | 3:+30873496 | None:intergenic |
| TGGATCTCCATCCTCTCCTG+TGG | 0.628993 | 3:-30873278 | MsG0380013125.01.T01:CDS |
| AATTTCGTCATCTTCATCTG+CGG | 0.629046 | 3:-30873623 | MsG0380013125.01.T01:CDS |
| TAAAGGAACAGCAGATCCAG+TGG | 0.630564 | 3:+30872835 | None:intergenic |
| AGTATGCACGATGACAAAGA+AGG | 0.634741 | 3:+30873131 | None:intergenic |
| AAATCTAACTGTCCGTATGG+CGG | 0.639120 | 3:-30873569 | MsG0380013125.01.T01:CDS |
| ATCCTTATGAGAATGCTCGA+AGG | 0.652618 | 3:-30873078 | MsG0380013125.01.T01:CDS |
| GGACAACCGATATCAGCCCC+AGG | 0.654655 | 3:+30873334 | None:intergenic |
| GTTAATTGAAAGATGTACGG+TGG | 0.654833 | 3:-30873670 | None:intergenic |
| GGAGCAGATGCAGCTGATCG+GGG | 0.658028 | 3:+30872812 | None:intergenic |
| GCTGCTACGAGCCTTTATCG+TGG | 0.663368 | 3:-30872770 | MsG0380013125.01.T01:CDS |
| AAACTTTGGAGCCACAGGAG+AGG | 0.663839 | 3:+30873267 | None:intergenic |
| GTTAACTCCTGGTCTAAATG+GGG | 0.665213 | 3:-30872554 | MsG0380013125.01.T01:CDS |
| TGGCGCTGATATCAATTGTG+TGG | 0.679251 | 3:-30873422 | MsG0380013125.01.T01:CDS |
| ATACATGCGAAATTCATCTG+TGG | 0.700612 | 3:+30873165 | None:intergenic |
| TAGACCAGGAGTTAACAGGT+CGG | 0.724329 | 3:+30872561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCCCCTTTTTTAAAATCA+GGG | + | Chr3:30873065-30873084 | None:intergenic | 25.0% |
| AATATGTTCCAAGACATTCA+TGG | - | Chr3:30873429-30873448 | MsG0380013125.01.T01:CDS | 30.0% | |
| ATTGTGAAAACAAGTCTTGA+AGG | - | Chr3:30872709-30872728 | MsG0380013125.01.T01:CDS | 30.0% | |
| TTCTCATAAGGATGGTAAAA+AGG | + | Chr3:30872994-30873013 | None:intergenic | 30.0% | |
| ! | ATTTTCAGCAGATGATAAAG+GGG | + | Chr3:30872782-30872801 | None:intergenic | 30.0% |
| ! | CATTTTCAGCAGATGATAAA+GGG | + | Chr3:30872783-30872802 | None:intergenic | 30.0% |
| ! | GATAATTGTGAATTTGCTCA+TGG | - | Chr3:30873096-30873115 | MsG0380013125.01.T01:CDS | 30.0% |
| ! | TAAAGTATCAATACTCCCAT+AGG | + | Chr3:30872554-30872573 | None:intergenic | 30.0% |
| !! | ATGCCCTGATTTTAAAAAAG+GGG | - | Chr3:30873059-30873078 | MsG0380013125.01.T01:CDS | 30.0% |
| !! | CATGCCCTGATTTTAAAAAA+GGG | - | Chr3:30873058-30873077 | MsG0380013125.01.T01:CDS | 30.0% |
| !!! | CAATCCCCTTTTTTAAAATC+AGG | + | Chr3:30873066-30873085 | None:intergenic | 30.0% |
| !!! | GAAGGAGATTTTGATTTGTT+AGG | + | Chr3:30872436-30872455 | None:intergenic | 30.0% |
| AATTTCGTCATCTTCATCTG+CGG | - | Chr3:30872456-30872475 | MsG0380013125.01.T01:CDS | 35.0% | |
| ACCAAAGTCATTTCCGTTAA+CGG | + | Chr3:30873577-30873596 | None:intergenic | 35.0% | |
| ACTTTAAATGTTTCACCGTC+AGG | - | Chr3:30872568-30872587 | MsG0380013125.01.T01:CDS | 35.0% | |
| ATACATGCGAAATTCATCTG+TGG | + | Chr3:30872917-30872936 | None:intergenic | 35.0% | |
| ATTGTTTCCATGCTCAAAAG+AGG | + | Chr3:30873616-30873635 | None:intergenic | 35.0% | |
| CCAATACTGGAAAACTTGAT+TGG | - | Chr3:30873550-30873569 | MsG0380013125.01.T01:CDS | 35.0% | |
| CCTTTATCATCTGCTGAAAA+TGG | - | Chr3:30872781-30872800 | MsG0380013125.01.T01:CDS | 35.0% | |
| CCTTTATCTCCATATGCAAA+CGG | - | Chr3:30873357-30873376 | MsG0380013125.01.T01:CDS | 35.0% | |
| GAAAAATCTAACTGTCCGTA+TGG | - | Chr3:30872507-30872526 | MsG0380013125.01.T01:CDS | 35.0% | |
| GATGAAGATGACGAAATTGA+AGG | + | Chr3:30872454-30872473 | None:intergenic | 35.0% | |
| TCTCTCCTTCAAATAATGCT+TGG | - | Chr3:30873382-30873401 | MsG0380013125.01.T01:CDS | 35.0% | |
| TCTTGGAACATATTTCTTCC+TGG | + | Chr3:30873423-30873442 | None:intergenic | 35.0% | |
| TGTAGAATTAACAGCTGTGT+CGG | + | Chr3:30872839-30872858 | None:intergenic | 35.0% | |
| TGTTAACTCCTGGTCTAAAT+GGG | - | Chr3:30873524-30873543 | MsG0380013125.01.T01:CDS | 35.0% | |
| TTCACAATTTCGAGCTTATG+AGG | + | Chr3:30872697-30872716 | None:intergenic | 35.0% | |
| ! | AAACTTGATTGGTCCGTTAA+CGG | - | Chr3:30873561-30873580 | MsG0380013125.01.T01:CDS | 35.0% |
| ! | AGATATACCTCTTTTGAGCA+TGG | - | Chr3:30873606-30873625 | MsG0380013125.01.T01:CDS | 35.0% |
| ! | CCAATCAAGTTTTCCAGTAT+TGG | + | Chr3:30873553-30873572 | None:intergenic | 35.0% |
| ! | CCATTTTCAGCAGATGATAA+AGG | + | Chr3:30872784-30872803 | None:intergenic | 35.0% |
| ! | TCTTTTGAGCATGGAAACAA+TGG | - | Chr3:30873615-30873634 | MsG0380013125.01.T01:CDS | 35.0% |
| !! | CCATGCCCTGATTTTAAAAA+AGG | - | Chr3:30873057-30873076 | MsG0380013125.01.T01:CDS | 35.0% |
| !! | TGATTCAAGTGGTTTGGTTA+AGG | - | Chr3:30872621-30872640 | MsG0380013125.01.T01:CDS | 35.0% |
| !!! | CCTTTTTTAAAATCAGGGCA+TGG | + | Chr3:30873060-30873079 | None:intergenic | 35.0% |
| AAATCTAACTGTCCGTATGG+CGG | - | Chr3:30872510-30872529 | MsG0380013125.01.T01:CDS | 40.0% | |
| AGGATGGTAAAAAGGACACT+CGG | + | Chr3:30872986-30873005 | None:intergenic | 40.0% | |
| AGTACCATCTTTGCAGAGAA+TGG | + | Chr3:30873160-30873179 | None:intergenic | 40.0% | |
| AGTATGCACGATGACAAAGA+AGG | + | Chr3:30872951-30872970 | None:intergenic | 40.0% | |
| ATCCTTATGAGAATGCTCGA+AGG | - | Chr3:30873001-30873020 | MsG0380013125.01.T01:CDS | 40.0% | |
| ATCGTGCATACTCTCATGAT+TGG | - | Chr3:30872959-30872978 | MsG0380013125.01.T01:CDS | 40.0% | |
| CATTTAGACCAGGAGTTAAC+AGG | + | Chr3:30873525-30873544 | None:intergenic | 40.0% | |
| CCGTTTGCATATGGAGATAA+AGG | + | Chr3:30873360-30873379 | None:intergenic | 40.0% | |
| CTGTTAACTCCTGGTCTAAA+TGG | - | Chr3:30873523-30873542 | MsG0380013125.01.T01:CDS | 40.0% | |
| GAAAACAAGTCTTGAAGGAC+TGG | - | Chr3:30872714-30872733 | MsG0380013125.01.T01:CDS | 40.0% | |
| GATCCAGTGGACACATATAT+TGG | + | Chr3:30873234-30873253 | None:intergenic | 40.0% | |
| GTTAACTCCTGGTCTAAATG+GGG | - | Chr3:30873525-30873544 | MsG0380013125.01.T01:CDS | 40.0% | |
| TCCGTTAACGGAAATGACTT+TGG | - | Chr3:30873573-30873592 | MsG0380013125.01.T01:CDS | 40.0% | |
| TCTAAATGGGGTTCCAATAC+TGG | - | Chr3:30873537-30873556 | MsG0380013125.01.T01:CDS | 40.0% | |
| TGAAGAGCCTGATCTATCTT+GGG | - | Chr3:30873638-30873657 | MsG0380013125.01.T01:CDS | 40.0% | |
| TTCGAGCATTCTCATAAGGA+TGG | + | Chr3:30873002-30873021 | None:intergenic | 40.0% | |
| ! | GTGCAAAAAAGCACACCTTT+CGG | + | Chr3:30873191-30873210 | None:intergenic | 40.0% |
| ! | TCTACACTAGGAAGTGCAAT+TGG | + | Chr3:30872880-30872899 | None:intergenic | 40.0% |
| ! | TTGGTAGCAAACCACGATAA+AGG | + | Chr3:30873323-30873342 | None:intergenic | 40.0% |
| !! | TACATGCTGCTTTCTACACT+AGG | + | Chr3:30872892-30872911 | None:intergenic | 40.0% |
| !! | TGATGCTGATTCAAGTGGTT+TGG | - | Chr3:30872615-30872634 | MsG0380013125.01.T01:CDS | 40.0% |
| !!! | AAGGACTGGTTTTATCACCT+GGG | - | Chr3:30872728-30872747 | MsG0380013125.01.T01:CDS | 40.0% |
| AAAGGCAGTGCAAAAGGAGT+TGG | + | Chr3:30873342-30873361 | None:intergenic | 45.0% | |
| AGCTGTAGGCGAACTTTCTA+AGG | + | Chr3:30873032-30873051 | None:intergenic | 45.0% | |
| ATTGGAACCCCATTTAGACC+AGG | + | Chr3:30873535-30873554 | None:intergenic | 45.0% | |
| CAATCGTGGATGCTTCCTAT+GGG | - | Chr3:30872536-30872555 | MsG0380013125.01.T01:CDS | 45.0% | |
| CGTCCAATATATGTGTCCAC+TGG | - | Chr3:30873228-30873247 | MsG0380013125.01.T01:CDS | 45.0% | |
| CTCCTTCGAGCATTCTCATA+AGG | + | Chr3:30873006-30873025 | None:intergenic | 45.0% | |
| GATTGGACCCAAGATAGATC+AGG | + | Chr3:30873648-30873667 | None:intergenic | 45.0% | |
| GCTGGCCAAGCATTATTTGA+AGG | + | Chr3:30873390-30873409 | None:intergenic | 45.0% | |
| GGAGATAAAGGCAGTGCAAA+AGG | + | Chr3:30873348-30873367 | None:intergenic | 45.0% | |
| GTGAAGAGCCTGATCTATCT+TGG | - | Chr3:30873637-30873656 | MsG0380013125.01.T01:CDS | 45.0% | |
| TAAAGGAACAGCAGATCCAG+TGG | + | Chr3:30873247-30873266 | None:intergenic | 45.0% | |
| TAGACCAGGAGTTAACAGGT+CGG | + | Chr3:30873521-30873540 | None:intergenic | 45.0% | |
| TCAATCGTGGATGCTTCCTA+TGG | - | Chr3:30872535-30872554 | MsG0380013125.01.T01:CDS | 45.0% | |
| TCATCTTCATCTGCGGTAGA+AGG | - | Chr3:30872463-30872482 | MsG0380013125.01.T01:CDS | 45.0% | |
| TGCATCTGCTCCTAATGTCA+TGG | - | Chr3:30873278-30873297 | MsG0380013125.01.T01:CDS | 45.0% | |
| TGCTCCTAATGTCATGGACA+TGG | - | Chr3:30873284-30873303 | MsG0380013125.01.T01:CDS | 45.0% | |
| TGGTACTAGTTGTGACCGAA+AGG | - | Chr3:30873173-30873192 | MsG0380013125.01.T01:CDS | 45.0% | |
| TTATCACCTGGGGCTGATAT+CGG | - | Chr3:30872739-30872758 | MsG0380013125.01.T01:CDS | 45.0% | |
| ! | ACAGCTGTGTCGGTAAACTT+TGG | + | Chr3:30872829-30872848 | None:intergenic | 45.0% |
| !! | TGGCGCTGATATCAATTGTG+TGG | - | Chr3:30872657-30872676 | MsG0380013125.01.T01:CDS | 45.0% |
| !!! | AGGACTGGTTTTATCACCTG+GGG | - | Chr3:30872729-30872748 | MsG0380013125.01.T01:CDS | 45.0% |
| !!! | GAAGGACTGGTTTTATCACC+TGG | - | Chr3:30872727-30872746 | MsG0380013125.01.T01:CDS | 45.0% |
| AGAATGGTGCGATACCGATC+TGG | + | Chr3:30873144-30873163 | None:intergenic | 50.0% | |
| CCACGATTGAATCCGCCATA+CGG | + | Chr3:30872525-30872544 | None:intergenic | 50.0% | |
| CGCACCATTCTCTGCAAAGA+TGG | - | Chr3:30873153-30873172 | MsG0380013125.01.T01:CDS | 50.0% | |
| CTTCCTGGAAAGTGAAGAGC+TGG | + | Chr3:30873408-30873427 | None:intergenic | 50.0% | |
| GAATGGTGCGATACCGATCT+GGG | + | Chr3:30873143-30873162 | None:intergenic | 50.0% | |
| GATAAAGGGGCAGCTGAATG+AGG | + | Chr3:30872769-30872788 | None:intergenic | 50.0% | |
| GCAGCATTTACACCAGCTTC+TGG | + | Chr3:30872595-30872614 | None:intergenic | 50.0% | |
| GCAGCCATGTCCATGACATT+AGG | + | Chr3:30873291-30873310 | None:intergenic | 50.0% | |
| GCTGCTGACCATGAATGTCT+TGG | + | Chr3:30873440-30873459 | None:intergenic | 50.0% | |
| TAGGAGCAGATGCAGCTGAT+CGG | + | Chr3:30873272-30873291 | None:intergenic | 50.0% | |
| TCACTGAAATGGCACCAGGA+CGG | + | Chr3:30873497-30873516 | None:intergenic | 50.0% | |
| ! | AACAGGTCGGCTCACTGAAA+TGG | + | Chr3:30873508-30873527 | None:intergenic | 50.0% |
| ! | CTCATGGACTATTCGAGACC+TGG | - | Chr3:30873112-30873131 | MsG0380013125.01.T01:CDS | 50.0% |
| ! | GGAGAGATGCCGTTTGCATA+TGG | + | Chr3:30873369-30873388 | None:intergenic | 50.0% |
| !! | AAACTTTGGAGCCACAGGAG+AGG | + | Chr3:30872815-30872834 | None:intergenic | 50.0% |
| !! | GCTGCTGATGCTGATTCAAG+TGG | - | Chr3:30872610-30872629 | MsG0380013125.01.T01:CDS | 50.0% |
| !! | TCGGTAAACTTTGGAGCCAC+AGG | + | Chr3:30872820-30872839 | None:intergenic | 50.0% |
| ACACCAGCTTCTGGACCTGA+CGG | + | Chr3:30872586-30872605 | None:intergenic | 55.0% | |
| ACTGAAATGGCACCAGGACG+GGG | + | Chr3:30873495-30873514 | None:intergenic | 55.0% | |
| AGACCTGGCTACACCCAGAT+CGG | - | Chr3:30873127-30873146 | MsG0380013125.01.T01:CDS | 55.0% | |
| AGGAGCAGATGCAGCTGATC+GGG | + | Chr3:30873271-30873290 | None:intergenic | 55.0% | |
| ATACCGATCTGGGTGTAGCC+AGG | + | Chr3:30873133-30873152 | None:intergenic | 55.0% | |
| CACTGAAATGGCACCAGGAC+GGG | + | Chr3:30873496-30873515 | None:intergenic | 55.0% | |
| GATGCAGCTGATCGGGGTAA+AGG | + | Chr3:30873264-30873283 | None:intergenic | 55.0% | |
| GCTGCTACGAGCCTTTATCG+TGG | - | Chr3:30873309-30873328 | MsG0380013125.01.T01:CDS | 55.0% | |
| GTTAAGGCTGCTGATGCTGC+TGG | - | Chr3:30872637-30872656 | MsG0380013125.01.T01:CDS | 55.0% | |
| TGAGCCGACCTGTTAACTCC+TGG | - | Chr3:30873514-30873533 | MsG0380013125.01.T01:CDS | 55.0% | |
| TGGATCTCCATCCTCTCCTG+TGG | - | Chr3:30872801-30872820 | MsG0380013125.01.T01:CDS | 55.0% | |
| TGGCCAGCTCTTCACTTTCC+AGG | - | Chr3:30873402-30873421 | MsG0380013125.01.T01:CDS | 55.0% | |
| ! | TTTGGAGCCACAGGAGAGGA+TGG | + | Chr3:30872811-30872830 | None:intergenic | 55.0% |
| !! | CCGTATGGCGGATTCAATCG+TGG | - | Chr3:30872522-30872541 | MsG0380013125.01.T01:CDS | 55.0% |
| AGGGCATGGCACACAGCTGT+AGG | + | Chr3:30873046-30873065 | None:intergenic | 60.0% | |
| CGGCTCACTGAAATGGCACC+AGG | + | Chr3:30873501-30873520 | None:intergenic | 60.0% | |
| GGACAACCGATATCAGCCCC+AGG | + | Chr3:30872748-30872767 | None:intergenic | 60.0% | |
| GGAGCAGATGCAGCTGATCG+GGG | + | Chr3:30873270-30873289 | None:intergenic | 60.0% | |
| TCACCGTCAGGTCCAGAAGC+TGG | - | Chr3:30872580-30872599 | MsG0380013125.01.T01:CDS | 60.0% | |
| TGTTTCTCACAGCCCCGTCC+TGG | - | Chr3:30873480-30873499 | MsG0380013125.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 30872421 | 30873680 | 30872421 | ID=MsG0380013125.01;Name=MsG0380013125.01 |
| Chr3 | mRNA | 30872421 | 30873680 | 30872421 | ID=MsG0380013125.01.T01;Parent=MsG0380013125.01;Name=MsG0380013125.01.T01;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|419 |
| Chr3 | exon | 30872421 | 30873680 | 30872421 | ID=MsG0380013125.01.T01:exon:6435;Parent=MsG0380013125.01.T01 |
| Chr3 | CDS | 30872421 | 30873680 | 30872421 | ID=MsG0380013125.01.T01:cds;Parent=MsG0380013125.01.T01 |
| Gene Sequence |
| Protein sequence |
