AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013429.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013429.01.T01 MTR_3g030055 67.742 155 31 2 1 155 8 143 2.25e-66 199
MsG0380013429.01.T01 MTR_3g030055 74.074 135 29 2 1 131 1 133 1.43e-62 189
MsG0380013429.01.T01 MTR_3g034200 39.855 138 55 4 6 132 2 122 4.87e-17 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013429.01.T01 AT5G13780 37.681 138 58 4 6 132 2 122 2.53e-15 70.1

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCACAATGTGCCAATATT+CGG 0.287513 3:+37712742 None:intergenic
CATGCATGCTTCAAATATTA+AGG 0.292410 3:+37710368 None:intergenic
AGGATGTCTTATGAACAATT+TGG 0.318747 3:-37710401 MsG0380013429.01.T01:three_prime_UTR
GGATTAGGTTTGTCACTTGT+GGG 0.332333 3:-37712493 MsG0380013429.01.T01:intron
CTCGTTACTCGCCCGAATAT+TGG 0.335099 3:-37712754 MsG0380013429.01.T01:CDS
AATTGAGTTCAATAGTTTGA+TGG 0.336133 3:-37710263 MsG0380013429.01.T01:three_prime_UTR
TGCATAAGAGTTGCAACATT+TGG 0.337938 3:-37712808 MsG0380013429.01.T01:CDS
CTGAGTAGTGAGAGGAAATA+TGG 0.344451 3:-37710332 MsG0380013429.01.T01:three_prime_UTR
GAGCTGCAGAGTTGCTCTTC+CGG 0.347682 3:+37711856 None:intergenic
TCCACAATGTGCCAATATTC+GGG 0.349965 3:+37712743 None:intergenic
TCTTGGTTTGTTTCAAAAGA+TGG 0.377755 3:-37711835 MsG0380013429.01.T01:CDS
AAATCCTTAACACCTAATCT+AGG 0.382048 3:+37710502 None:intergenic
TGCAACATTTGGAGACGTAT+TGG 0.394327 3:-37712797 MsG0380013429.01.T01:CDS
TGGATTAGGTTTGTCACTTG+TGG 0.409367 3:-37712494 MsG0380013429.01.T01:CDS
ATAACCTAGATTAGGTGTTA+AGG 0.417654 3:-37710506 MsG0380013429.01.T01:three_prime_UTR
GATAGGTATGGTGAACGAAT+AGG 0.421395 3:+37712614 None:intergenic
TTCTTCAGCCAGTCAAGATT+AGG 0.429891 3:-37710644 MsG0380013429.01.T01:CDS
ATAGGTATGGTGAACGAATA+GGG 0.433258 3:+37712615 None:intergenic
CTCTGAAGGTGAAGAGGAAG+AGG 0.447607 3:-37712665 MsG0380013429.01.T01:CDS
CTTGGTTTGTTTCAAAAGAT+GGG 0.449922 3:-37711834 MsG0380013429.01.T01:CDS
CGCCCAAAACACCATGGAAA+AGG 0.453353 3:-37712557 MsG0380013429.01.T01:CDS
AAAACACCATGGAAAAGGTT+AGG 0.456430 3:-37712552 MsG0380013429.01.T01:CDS
AAGAGCAACTCTGCAGCTCT+TGG 0.462439 3:-37711852 MsG0380013429.01.T01:CDS
AATTTGATATAACCTAGATT+AGG 0.475792 3:-37710514 MsG0380013429.01.T01:three_prime_UTR
CCAGTCAAGATTAGGTGTTA+AGG 0.481885 3:-37710636 MsG0380013429.01.T01:exon
AAGACGTTTCAGTGCATGTC+CGG 0.496711 3:-37711875 MsG0380013429.01.T01:intron
CATTTGGAGACGTATTGGAT+TGG 0.499964 3:-37712792 MsG0380013429.01.T01:CDS
GAAGGTCTTCCTCCTCCTGC+GGG 0.507846 3:+37710664 None:intergenic
GTTGCTTACCTCCTCTCTGA+AGG 0.508220 3:-37712679 MsG0380013429.01.T01:CDS
GATTTAACATGTAGTACTGC+AGG 0.520464 3:-37710484 MsG0380013429.01.T01:three_prime_UTR
ATGGATTCTCCCGCAGGAGG+AGG 0.526333 3:-37710673 MsG0380013429.01.T01:CDS
AAGGTGAAGAGGAAGAGGAA+GGG 0.530803 3:-37712660 MsG0380013429.01.T01:CDS
CCTTAACACCTAATCTTGAC+TGG 0.533110 3:+37710636 None:intergenic
AGGAACAATGTCGTCAAAGA+AGG 0.539052 3:-37712833 None:intergenic
TAATCTTGACTGGCTGAAGA+AGG 0.548995 3:+37710646 None:intergenic
TCAAACATGGATTCTCCCGC+AGG 0.555440 3:-37710679 MsG0380013429.01.T01:CDS
GAAGGTGAAGAGGAAGAGGA+AGG 0.556577 3:-37712661 MsG0380013429.01.T01:CDS
CCTCCTCTCTGAAGGTGAAG+AGG 0.564442 3:-37712671 MsG0380013429.01.T01:CDS
GCCCGAATATTGGCACATTG+TGG 0.568169 3:-37712744 MsG0380013429.01.T01:CDS
AGAAGGTCTTCCTCCTCCTG+CGG 0.599858 3:+37710663 None:intergenic
CCTCTTCACCTTCAGAGAGG+AGG 0.614706 3:+37712671 None:intergenic
CACCGCCGCCCAAAACACCA+TGG 0.620119 3:-37712563 MsG0380013429.01.T01:CDS
ATAGGGAGGCGATACTAAAG+TGG 0.620673 3:+37712632 None:intergenic
CACCATACCTATCGTAAACG+TGG 0.631082 3:-37712604 MsG0380013429.01.T01:CDS
TGAATCTGTGATAATTGAGA+AGG 0.632046 3:-37710291 MsG0380013429.01.T01:three_prime_UTR
CTTCCTCTTCACCTTCAGAG+AGG 0.638002 3:+37712668 None:intergenic
AACATGGATTCTCCCGCAGG+AGG 0.639259 3:-37710676 MsG0380013429.01.T01:CDS
GAAGAAGCTTATTCATGTCG+CGG 0.645766 3:-37712722 MsG0380013429.01.T01:CDS
AGTGAGTGCTGAGTAGTGAG+AGG 0.650520 3:-37710340 MsG0380013429.01.T01:three_prime_UTR
TACCACGTTTACGATAGGTA+TGG 0.651983 3:+37712602 None:intergenic
AGCGATACCACGTTTACGAT+AGG 0.681782 3:+37712597 None:intergenic
CATGTCGCGGACAATTGCAG+CGG 0.697708 3:-37712709 MsG0380013429.01.T01:CDS
AGATGGGTACACACTTCACG+AGG 0.701875 3:-37711818 MsG0380013429.01.T01:intron
GGTATGGTGAACGAATAGGG+AGG 0.789435 3:+37712618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAATTAAAACTTTGA+TGG - Chr3:37711423-37711442 MsG0380013429.01.T01:intron 15.0%
!!! ATAATTTTGTTTTTTGGATT+AGG - Chr3:37710581-37710600 MsG0380013429.01.T01:three_prime_UTR 15.0%
!!! TCTGTTATAATTTTGTTTTT+TGG - Chr3:37710575-37710594 MsG0380013429.01.T01:three_prime_UTR 15.0%
!! AAGAAATAAAGGATTAAAGT+TGG + Chr3:37712072-37712091 None:intergenic 20.0%
!! AATTTGATATAACCTAGATT+AGG - Chr3:37712575-37712594 MsG0380013429.01.T01:CDS 20.0%
!!! ACTTTGTATATTTTGTAGTA+TGG - Chr3:37712490-37712509 MsG0380013429.01.T01:intron 20.0%
!!! AGACTTTTAATGGAAAAAAT+AGG + Chr3:37711160-37711179 None:intergenic 20.0%
!!! TTGATAGTCACTAATATTTA+GGG - Chr3:37711522-37711541 MsG0380013429.01.T01:intron 20.0%
! AAATATACTGTTTGAGTATG+TGG + Chr3:37711952-37711971 None:intergenic 25.0%
! AATTGAGTTCAATAGTTTGA+TGG - Chr3:37712826-37712845 MsG0380013429.01.T01:CDS 25.0%
! ATGGAGGTAAAAAAAATGAA+TGG - Chr3:37711840-37711859 MsG0380013429.01.T01:CDS 25.0%
! ATGTTAACTACAACCTTATA+AGG - Chr3:37711880-37711899 MsG0380013429.01.T01:intron 25.0%
! CAATCAATTAAGAGAACAAA+TGG + Chr3:37712146-37712165 None:intergenic 25.0%
! CATTTGTTCTCTTAATTGAT+TGG - Chr3:37712144-37712163 MsG0380013429.01.T01:intron 25.0%
! CTGGTTTAATATTTACATGA+TGG - Chr3:37711446-37711465 MsG0380013429.01.T01:intron 25.0%
! GAAAACCAAAAGAAAAATCT+CGG + Chr3:37711039-37711058 None:intergenic 25.0%
! GAAAATATGCAAGTAGTAAA+AGG + Chr3:37712284-37712303 None:intergenic 25.0%
! GACAACAAAAACATCAAAAA+AGG + Chr3:37711133-37711152 None:intergenic 25.0%
! TAACATCATGTAAAGTAACA+CGG + Chr3:37711866-37711885 None:intergenic 25.0%
! TAATCGCAATTCATTAAACA+AGG + Chr3:37712309-37712328 None:intergenic 25.0%
! TCTAGAAAATGGAAAAAGAT+GGG + Chr3:37711394-37711413 None:intergenic 25.0%
!! ACATTGTAACAGACTTTTAA+TGG + Chr3:37711170-37711189 None:intergenic 25.0%
!! ATAATTAAAACTTTGATGGC+TGG - Chr3:37711427-37711446 MsG0380013429.01.T01:intron 25.0%
!! ATGGAGTTTGTTTAATGTTT+AGG - Chr3:37710661-37710680 MsG0380013429.01.T01:CDS 25.0%
!! CTTGATAGTCACTAATATTT+AGG - Chr3:37711521-37711540 MsG0380013429.01.T01:intron 25.0%
!! TCACAATACATTCTAGAAAA+TGG + Chr3:37711405-37711424 None:intergenic 25.0%
!! TCTTCTTCTTGTAATGATTT+TGG - Chr3:37710953-37710972 MsG0380013429.01.T01:intron 25.0%
!! TTCTAGAAAATGGAAAAAGA+TGG + Chr3:37711395-37711414 None:intergenic 25.0%
!!! AGTATGGTATCTTTTAAAGT+AGG - Chr3:37712506-37712525 MsG0380013429.01.T01:CDS 25.0%
!!! GTATGGTATCTTTTAAAGTA+GGG - Chr3:37712507-37712526 MsG0380013429.01.T01:CDS 25.0%
!!! TATGGTATCTTTTAAAGTAG+GGG - Chr3:37712508-37712527 MsG0380013429.01.T01:CDS 25.0%
!!! TGTTGCTTATTGATTTCAAA+TGG - Chr3:37711821-37711840 MsG0380013429.01.T01:CDS 25.0%
!!! TTTGTCTTTTTCAAAGATCT+AGG - Chr3:37712001-37712020 MsG0380013429.01.T01:intron 25.0%
!!! TTTTCTTGTTTCCTAATCTT+GGG - Chr3:37711054-37711073 MsG0380013429.01.T01:intron 25.0%
AAATCCTTAACACCTAATCT+AGG + Chr3:37712460-37712479 None:intergenic 30.0%
AATTAAATCATGGTGCTTTC+TGG - Chr3:37712372-37712391 MsG0380013429.01.T01:intron 30.0%
ACAATGTGTAATTTGACTGA+AGG - Chr3:37711183-37711202 MsG0380013429.01.T01:intron 30.0%
AGAAAACAGAAAATCATCAC+GGG + Chr3:37710781-37710800 None:intergenic 30.0%
AGGATGTCTTATGAACAATT+TGG - Chr3:37712688-37712707 MsG0380013429.01.T01:CDS 30.0%
ATAACCTAGATTAGGTGTTA+AGG - Chr3:37712583-37712602 MsG0380013429.01.T01:CDS 30.0%
CAAACGAAGAGAAGAAATAA+AGG + Chr3:37712083-37712102 None:intergenic 30.0%
CAGAAAACAGAAAATCATCA+CGG + Chr3:37710782-37710801 None:intergenic 30.0%
CATGCATGCTTCAAATATTA+AGG + Chr3:37712724-37712743 None:intergenic 30.0%
CTAGAAAATGGAAAAAGATG+GGG + Chr3:37711393-37711412 None:intergenic 30.0%
CTTATTGAGGATTCAGATTA+GGG - Chr3:37712191-37712210 MsG0380013429.01.T01:intron 30.0%
TAATGTTTAGGTATGAAGCT+TGG - Chr3:37710673-37710692 MsG0380013429.01.T01:CDS 30.0%
TAGAAAATGGAAAAAGATGG+GGG + Chr3:37711392-37711411 None:intergenic 30.0%
TATTCCAAGGATGAAAAAGT+CGG + Chr3:37711607-37711626 None:intergenic 30.0%
TCCATACATAACCAGTTAAA+AGG + Chr3:37710646-37710665 None:intergenic 30.0%
TCTAAAAAGTCGTCCTTATA+AGG + Chr3:37711896-37711915 None:intergenic 30.0%
TGAATCTGTGATAATTGAGA+AGG - Chr3:37712798-37712817 MsG0380013429.01.T01:CDS 30.0%
TGCTGAAGTCAATTAAATCA+TGG - Chr3:37712362-37712381 MsG0380013429.01.T01:intron 30.0%
TGGAATATATGCTCTTTACA+TGG - Chr3:37711620-37711639 MsG0380013429.01.T01:intron 30.0%
! AGTACTTCAGTATCTTTTGA+AGG - Chr3:37712668-37712687 MsG0380013429.01.T01:CDS 30.0%
! ATTTGATCGCTATCTTTTTG+TGG - Chr3:37711559-37711578 MsG0380013429.01.T01:intron 30.0%
! CTTTATTTCTTCTCTTCGTT+TGG - Chr3:37712081-37712100 MsG0380013429.01.T01:intron 30.0%
! TCTTCTTGTAATGATTTTGG+TGG - Chr3:37710956-37710975 MsG0380013429.01.T01:intron 30.0%
! TGTAAAGAGCATATATTCCA+AGG + Chr3:37711620-37711639 None:intergenic 30.0%
! TTTCTTGTTTCCTAATCTTG+GGG - Chr3:37711055-37711074 MsG0380013429.01.T01:intron 30.0%
!! AGTTGGTATCTTTTAACGTA+GGG - Chr3:37712637-37712656 MsG0380013429.01.T01:CDS 30.0%
!! CTTGGTTTGTTTCAAAAGAT+GGG - Chr3:37711255-37711274 MsG0380013429.01.T01:intron 30.0%
!! GTTTTCTTGTTTCCTAATCT+TGG - Chr3:37711053-37711072 MsG0380013429.01.T01:intron 30.0%
!! TCTTGGTTTGTTTCAAAAGA+TGG - Chr3:37711254-37711273 MsG0380013429.01.T01:intron 30.0%
!! TGCTTATTGATTTCAAATGG+AGG - Chr3:37711824-37711843 MsG0380013429.01.T01:CDS 30.0%
!! TGCTTTCTGGATTTATTTTC+AGG - Chr3:37712385-37712404 MsG0380013429.01.T01:intron 30.0%
!! TTCTTGAGTGTAGTTCTAAT+GGG - Chr3:37711732-37711751 MsG0380013429.01.T01:intron 30.0%
!! TTTCTTGAGTGTAGTTCTAA+TGG - Chr3:37711731-37711750 MsG0380013429.01.T01:intron 30.0%
!!! AAGTTGGTATCTTTTAACGT+AGG - Chr3:37712636-37712655 MsG0380013429.01.T01:CDS 30.0%
!!! TTATTTTCAGGTCTCAAACA+TGG - Chr3:37712397-37712416 MsG0380013429.01.T01:intron 30.0%
AAAACACCATGGAAAAGGTT+AGG - Chr3:37710537-37710556 MsG0380013429.01.T01:three_prime_UTR 35.0%
AACCAAAAGAAAAATCTCGG+AGG + Chr3:37711036-37711055 None:intergenic 35.0%
AATCTGAGTTTCACTATGCT+AGG - Chr3:37710806-37710825 MsG0380013429.01.T01:intron 35.0%
AGAAAATGGAAAAAGATGGG+GGG + Chr3:37711391-37711410 None:intergenic 35.0%
AGTCGGTTAAATACTTGCAT+TGG + Chr3:37711590-37711609 None:intergenic 35.0%
AGTCTTGAGGATCATAGATA+TGG - Chr3:37712254-37712273 MsG0380013429.01.T01:intron 35.0%
ATAGGTATGGTGAACGAATA+GGG + Chr3:37710477-37710496 None:intergenic 35.0%
ATGTGCAATTTAGCTGTGTA+GGG - Chr3:37711661-37711680 MsG0380013429.01.T01:intron 35.0%
ATGTGTAATTTGACTGAAGG+TGG - Chr3:37711186-37711205 MsG0380013429.01.T01:intron 35.0%
ATGTTGCTCATTGCTTATTG+AGG - Chr3:37712178-37712197 MsG0380013429.01.T01:intron 35.0%
CTAGGATTATCTTCTATTCC+TGG - Chr3:37710824-37710843 MsG0380013429.01.T01:intron 35.0%
CTCCTCATCATCAAAATACT+TGG + Chr3:37711303-37711322 None:intergenic 35.0%
GATTTAACATGTAGTACTGC+AGG - Chr3:37712605-37712624 MsG0380013429.01.T01:CDS 35.0%
GCTTATTGAGGATTCAGATT+AGG - Chr3:37712190-37712209 MsG0380013429.01.T01:intron 35.0%
TATGTGCAATTTAGCTGTGT+AGG - Chr3:37711660-37711679 MsG0380013429.01.T01:intron 35.0%
TGCATAAGAGTTGCAACATT+TGG - Chr3:37710281-37710300 MsG0380013429.01.T01:three_prime_UTR 35.0%
TTATCTTCTATTCCTGGAAG+TGG - Chr3:37710830-37710849 MsG0380013429.01.T01:intron 35.0%
TTCCACAATGTGCCAATATT+CGG + Chr3:37710350-37710369 None:intergenic 35.0%
TTGGACTTAGACTAACACTT+GGG - Chr3:37712224-37712243 MsG0380013429.01.T01:intron 35.0%
! AACAAACCTAACCTTTTCCA+TGG + Chr3:37710546-37710565 None:intergenic 35.0%
! AACCTTTTCCATGGTGTTTT+GGG + Chr3:37710537-37710556 None:intergenic 35.0%
! AAGGACGACTTTTTAGATAG+TGG - Chr3:37711899-37711918 MsG0380013429.01.T01:intron 35.0%
! AGTGCTTTTCTATTTCAGTG+TGG - Chr3:37711785-37711804 MsG0380013429.01.T01:intron 35.0%
! CGTGATGATTTTCTGTTTTC+TGG - Chr3:37710780-37710799 MsG0380013429.01.T01:intron 35.0%
! TAACCTTTTCCATGGTGTTT+TGG + Chr3:37710538-37710557 None:intergenic 35.0%
! TTGGTTGAGTTGTTTCGTTA+GGG - Chr3:37710692-37710711 MsG0380013429.01.T01:intron 35.0%
! TTTTCAGATAGATCACACAG+TGG + Chr3:37710758-37710777 None:intergenic 35.0%
!! ACTGCAGGATTTTTCAAAGT+TGG - Chr3:37712620-37712639 MsG0380013429.01.T01:CDS 35.0%
!! CTTGTAATGATTTTGGTGGT+TGG - Chr3:37710960-37710979 MsG0380013429.01.T01:intron 35.0%
!! GCCTTTTAACTGGTTATGTA+TGG - Chr3:37710642-37710661 MsG0380013429.01.T01:CDS 35.0%
!! TTCTGTAGTTAGTCTTGTCT+GGG - Chr3:37710998-37711017 MsG0380013429.01.T01:intron 35.0%
!! TTTCTGTAGTTAGTCTTGTC+TGG - Chr3:37710997-37711016 MsG0380013429.01.T01:intron 35.0%
!!! CAAGTATTTTGATGATGAGG+AGG - Chr3:37711301-37711320 MsG0380013429.01.T01:intron 35.0%
!!! TTAACCGACTTTTTCATCCT+TGG - Chr3:37711600-37711619 MsG0380013429.01.T01:intron 35.0%
AAACACTTCCCACAGAGAAT+TGG + Chr3:37710909-37710928 None:intergenic 40.0%
AAAGGGAGTGGCAATGATTA+GGG + Chr3:37710870-37710889 None:intergenic 40.0%
ATTGAGGATTCAGATTAGGG+TGG - Chr3:37712194-37712213 MsG0380013429.01.T01:intron 40.0%
CAGACAGAGCACAATATACA+GGG + Chr3:37712047-37712066 None:intergenic 40.0%
CATTTGGAGACGTATTGGAT+TGG - Chr3:37710297-37710316 MsG0380013429.01.T01:three_prime_UTR 40.0%
CCAGTCAAGATTAGGTGTTA+AGG - Chr3:37712453-37712472 MsG0380013429.01.T01:intron 40.0%
CCTTAACACCTAATCTTGAC+TGG + Chr3:37712456-37712475 None:intergenic 40.0%
CTGAGTAGTGAGAGGAAATA+TGG - Chr3:37712757-37712776 MsG0380013429.01.T01:CDS 40.0%
CTTGGGACTAAAAAGTCTTG+AGG - Chr3:37712241-37712260 MsG0380013429.01.T01:intron 40.0%
GAAGAAGCTTATTCATGTCG+CGG - Chr3:37710367-37710386 MsG0380013429.01.T01:three_prime_UTR 40.0%
GATAGGTATGGTGAACGAAT+AGG + Chr3:37710478-37710497 None:intergenic 40.0%
GTCTTGAGGAAGATACTCAA+GGG - Chr3:37711332-37711351 MsG0380013429.01.T01:intron 40.0%
GTTGGACTTAGACTAACACT+TGG - Chr3:37712223-37712242 MsG0380013429.01.T01:intron 40.0%
TAAAGGGAGTGGCAATGATT+AGG + Chr3:37710871-37710890 None:intergenic 40.0%
TACCACGTTTACGATAGGTA+TGG + Chr3:37710490-37710509 None:intergenic 40.0%
TATTCCTGGAAGTGGTTCTT+CGG - Chr3:37710838-37710857 MsG0380013429.01.T01:intron 40.0%
TCCACAATGTGCCAATATTC+GGG + Chr3:37710349-37710368 None:intergenic 40.0%
TCTTGAGGAAGATACTCAAG+GGG - Chr3:37711333-37711352 MsG0380013429.01.T01:intron 40.0%
TGCAACATTTGGAGACGTAT+TGG - Chr3:37710292-37710311 MsG0380013429.01.T01:three_prime_UTR 40.0%
TGTCTTGAGGAAGATACTCA+AGG - Chr3:37711331-37711350 MsG0380013429.01.T01:intron 40.0%
TTCTTCAGCCAGTCAAGATT+AGG - Chr3:37712445-37712464 MsG0380013429.01.T01:intron 40.0%
TTGAGGATTCAGATTAGGGT+GGG - Chr3:37712195-37712214 MsG0380013429.01.T01:intron 40.0%
! CTTGGTTGAGTTGTTTCGTT+AGG - Chr3:37710691-37710710 MsG0380013429.01.T01:intron 40.0%
! GGATTAGGTTTGTCACTTGT+GGG - Chr3:37710596-37710615 MsG0380013429.01.T01:three_prime_UTR 40.0%
! GTCCTCCGAGATTTTTCTTT+TGG - Chr3:37711031-37711050 MsG0380013429.01.T01:intron 40.0%
! TAATCTTGACTGGCTGAAGA+AGG + Chr3:37712446-37712465 None:intergenic 40.0%
! TGGATTAGGTTTGTCACTTG+TGG - Chr3:37710595-37710614 MsG0380013429.01.T01:three_prime_UTR 40.0%
! TGGTATCTTTTAACGTAGGG+TGG - Chr3:37712640-37712659 MsG0380013429.01.T01:CDS 40.0%
! TGTGGTATAGGCCTTTTAAC+TGG - Chr3:37710632-37710651 MsG0380013429.01.T01:exon 40.0%
! TTGAGTTGTTTCGTTAGGGT+GGG - Chr3:37710696-37710715 MsG0380013429.01.T01:intron 40.0%
!! TCTGTAGTTAGTCTTGTCTG+GGG - Chr3:37710999-37711018 MsG0380013429.01.T01:intron 40.0%
!!! GGCCAAGTATTTTGATGATG+AGG - Chr3:37711298-37711317 MsG0380013429.01.T01:intron 40.0%
!!! GGTATCTTTTAAAGTAGGGG+TGG - Chr3:37712511-37712530 MsG0380013429.01.T01:CDS 40.0%
!!! TTCTCTGTGGGAAGTGTTTT+TGG - Chr3:37710910-37710929 MsG0380013429.01.T01:intron 40.0%
AAAATCCGCACCCCAAGATT+AGG + Chr3:37711068-37711087 None:intergenic 45.0%
AAAGGTCTGTACAACAGCTG+CGG + Chr3:37711115-37711134 None:intergenic 45.0%
AAGACGTTTCAGTGCATGTC+CGG - Chr3:37711214-37711233 MsG0380013429.01.T01:intron 45.0%
AAGGTGAAGAGGAAGAGGAA+GGG - Chr3:37710429-37710448 MsG0380013429.01.T01:three_prime_UTR 45.0%
AGCGATACCACGTTTACGAT+AGG + Chr3:37710495-37710514 None:intergenic 45.0%
ATAGGGAGGCGATACTAAAG+TGG + Chr3:37710460-37710479 None:intergenic 45.0%
ATTGCCACTCCCTTTATGAG+TGG - Chr3:37710875-37710894 MsG0380013429.01.T01:intron 45.0%
CACCATACCTATCGTAAACG+TGG - Chr3:37710485-37710504 MsG0380013429.01.T01:three_prime_UTR 45.0%
CCAGACAGAGCACAATATAC+AGG + Chr3:37712048-37712067 None:intergenic 45.0%
CCTGTATATTGTGCTCTGTC+TGG - Chr3:37712045-37712064 MsG0380013429.01.T01:intron 45.0%
GCAATTTAGCTGTGTAGGGT+GGG - Chr3:37711665-37711684 MsG0380013429.01.T01:intron 45.0%
TAGCGTATAGGGTGTGGTAT+AGG - Chr3:37710620-37710639 MsG0380013429.01.T01:exon 45.0%
TGAGGATTCAGATTAGGGTG+GGG - Chr3:37712196-37712215 MsG0380013429.01.T01:intron 45.0%
TGCAATTTAGCTGTGTAGGG+TGG - Chr3:37711664-37711683 MsG0380013429.01.T01:intron 45.0%
TGTTTCCTAATCTTGGGGTG+CGG - Chr3:37711060-37711079 MsG0380013429.01.T01:intron 45.0%
TTGCCACTCCCTTTATGAGT+GGG - Chr3:37710876-37710895 MsG0380013429.01.T01:intron 45.0%
! GTTGAGTTGTTTCGTTAGGG+TGG - Chr3:37710695-37710714 MsG0380013429.01.T01:intron 45.0%
!! AGATTAGGGTGGGGTTTTGT+TGG - Chr3:37712205-37712224 MsG0380013429.01.T01:intron 45.0%
!! CACTTGTGGGTTAGCGTATA+GGG - Chr3:37710609-37710628 MsG0380013429.01.T01:three_prime_UTR 45.0%
!! CTTTTCCATGGTGTTTTGGG+CGG + Chr3:37710534-37710553 None:intergenic 45.0%
!! TCACTTGTGGGTTAGCGTAT+AGG - Chr3:37710608-37710627 MsG0380013429.01.T01:three_prime_UTR 45.0%
AAGAGCAACTCTGCAGCTCT+TGG - Chr3:37711237-37711256 MsG0380013429.01.T01:intron 50.0%
AGATGGGTACACACTTCACG+AGG - Chr3:37711271-37711290 MsG0380013429.01.T01:intron 50.0%
AGGAGGACGCTATTGTCTTG+AGG - Chr3:37711318-37711337 MsG0380013429.01.T01:intron 50.0%
ATGGAAAAAGATGGGGGGAG+TGG + Chr3:37711386-37711405 None:intergenic 50.0%
CGCCCAAAACACCATGGAAA+AGG - Chr3:37710532-37710551 MsG0380013429.01.T01:three_prime_UTR 50.0%
CTCGTTACTCGCCCGAATAT+TGG - Chr3:37710335-37710354 MsG0380013429.01.T01:three_prime_UTR 50.0%
CTTCCTCTTCACCTTCAGAG+AGG + Chr3:37710424-37710443 None:intergenic 50.0%
GAAGGTGAAGAGGAAGAGGA+AGG - Chr3:37710428-37710447 MsG0380013429.01.T01:three_prime_UTR 50.0%
GAGGCGAACCAATTCTCTGT+GGG - Chr3:37710898-37710917 MsG0380013429.01.T01:intron 50.0%
GCCCGAATATTGGCACATTG+TGG - Chr3:37710345-37710364 MsG0380013429.01.T01:three_prime_UTR 50.0%
GGTATGGTGAACGAATAGGG+AGG + Chr3:37710474-37710493 None:intergenic 50.0%
GTACACACTTCACGAGGTGA+AGG - Chr3:37711277-37711296 MsG0380013429.01.T01:intron 50.0%
GTTCGCCTCCCACTCATAAA+GGG + Chr3:37710887-37710906 None:intergenic 50.0%
GTTGCTTACCTCCTCTCTGA+AGG - Chr3:37710410-37710429 MsG0380013429.01.T01:three_prime_UTR 50.0%
TCAAACATGGATTCTCCCGC+AGG - Chr3:37712410-37712429 MsG0380013429.01.T01:intron 50.0%
TGGAAAAAGATGGGGGGAGT+GGG + Chr3:37711385-37711404 None:intergenic 50.0%
TTCACCGAAGAACCACTTCC+AGG + Chr3:37710845-37710864 None:intergenic 50.0%
! CTCTGAAGGTGAAGAGGAAG+AGG - Chr3:37710424-37710443 MsG0380013429.01.T01:three_prime_UTR 50.0%
! GTTGTTTCGTTAGGGTGGGA+AGG - Chr3:37710700-37710719 MsG0380013429.01.T01:intron 50.0%
! TTGGGGTGCGGATTTTCTCT+AGG - Chr3:37711072-37711091 MsG0380013429.01.T01:intron 50.0%
!! AGTGAGTGCTGAGTAGTGAG+AGG - Chr3:37712749-37712768 MsG0380013429.01.T01:CDS 50.0%
AACATGGATTCTCCCGCAGG+AGG - Chr3:37712413-37712432 MsG0380013429.01.T01:intron 55.0%
AGAAGGTCTTCCTCCTCCTG+CGG + Chr3:37712429-37712448 None:intergenic 55.0%
CATGTCGCGGACAATTGCAG+CGG - Chr3:37710380-37710399 MsG0380013429.01.T01:three_prime_UTR 55.0%
CCACTCCCTTTATGAGTGGG+AGG - Chr3:37710879-37710898 MsG0380013429.01.T01:intron 55.0%
CCTCCCACTCATAAAGGGAG+TGG + Chr3:37710882-37710901 None:intergenic 55.0%
CCTCTTCACCTTCAGAGAGG+AGG + Chr3:37710421-37710440 None:intergenic 55.0%
GAGCTGCAGAGTTGCTCTTC+CGG + Chr3:37711236-37711255 None:intergenic 55.0%
GAGTGGGTCTCACAGTTAGG+TGG + Chr3:37711369-37711388 None:intergenic 55.0%
GGAGGCGAACCAATTCTCTG+TGG - Chr3:37710897-37710916 MsG0380013429.01.T01:intron 55.0%
GGTTCGCCTCCCACTCATAA+AGG + Chr3:37710888-37710907 None:intergenic 55.0%
GTACAACAGCTGCGGTCTCA+AGG + Chr3:37711107-37711126 None:intergenic 55.0%
! CCTCCTCTCTGAAGGTGAAG+AGG - Chr3:37710418-37710437 MsG0380013429.01.T01:three_prime_UTR 55.0%
!! GTCTTGTCTGGGGAGTGTTC+TGG - Chr3:37711009-37711028 MsG0380013429.01.T01:intron 55.0%
!! GTGGGTTAGCGTATAGGGTG+TGG - Chr3:37710614-37710633 MsG0380013429.01.T01:three_prime_UTR 55.0%
!! TTCCATGGTGTTTTGGGCGG+CGG + Chr3:37710531-37710550 None:intergenic 55.0%
ATGGATTCTCCCGCAGGAGG+AGG - Chr3:37712416-37712435 MsG0380013429.01.T01:intron 60.0%
GAAGGTCTTCCTCCTCCTGC+GGG + Chr3:37712428-37712447 None:intergenic 60.0%
GGGGAGTGGGTCTCACAGTT+AGG + Chr3:37711372-37711391 None:intergenic 60.0%
GTGGGCGTGAGGTCAGACTT+TGG - Chr3:37711683-37711702 MsG0380013429.01.T01:intron 60.0%
AGCTGTGTAGGGTGGGCGTG+AGG - Chr3:37711672-37711691 MsG0380013429.01.T01:intron 65.0%
CACCGCCGCCCAAAACACCA+TGG - Chr3:37710526-37710545 MsG0380013429.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 37710263 37712848 37710263 ID=MsG0380013429.01;Name=MsG0380013429.01
Chr3 mRNA 37710263 37712848 37710263 ID=MsG0380013429.01.T01;Parent=MsG0380013429.01;Name=MsG0380013429.01.T01;_AED=0.35;_eAED=0.43;_QI=0|0|0.33|1|0|0|3|375|162
Chr3 exon 37710263 37710704 37710263 ID=MsG0380013429.01.T01:exon:8387;Parent=MsG0380013429.01.T01
Chr3 exon 37711819 37711885 37711819 ID=MsG0380013429.01.T01:exon:8386;Parent=MsG0380013429.01.T01
Chr3 exon 37712494 37712848 37712494 ID=MsG0380013429.01.T01:exon:8385;Parent=MsG0380013429.01.T01
Chr3 CDS 37712494 37712848 37712494 ID=MsG0380013429.01.T01:cds;Parent=MsG0380013429.01.T01
Chr3 CDS 37711819 37711885 37711819 ID=MsG0380013429.01.T01:cds;Parent=MsG0380013429.01.T01
Chr3 CDS 37710638 37710704 37710638 ID=MsG0380013429.01.T01:cds;Parent=MsG0380013429.01.T01
Chr3 three_prime_UTR 37710263 37710637 37710263 ID=MsG0380013429.01.T01:three_prime_utr;Parent=MsG0380013429.01.T01
Gene Sequence

>MsG0380013429.01.T01

ATGTCGTCAAAGAAGGTGTGCATAAGAGTTGCAACATTTGGAGACGTATTGGATTGGAACAGTAACAACAATCTCGTTACTCGCCCGAATATTGGCACATTGTGGAAGAAGCTTATTCATGTCGCGGACAATTGCAGCGGCTGTATTGTTGCTTACCTCCTCTCTGAAGGTGAAGAGGAAGAGGAAGGGAATGACCACTTTAGTATCGCCTCCCTATTCGTTCACCATACCTATCGTAAACGTGGTATCGCTACTGATCTTATCACCGCCGCCCAAAACACCATGGAAAAGGTTAGGTTTGTTTCTTTATATTCTGTTATAATTTTGTTTTTTGGATTAGGTTTGTCACTTGTGGTGCATGTCCGGAAGAGCAACTCTGCAGCTCTTGGTTTGTTTCAAAAGATGGGTACACACTTCACGAGGTCTCAAACATGGATTCTCCCGCAGGAGGAGGAAGACCTTCTTCAGCCAGTCAAGATTAGGTGTTAA
Protein sequence

>MsG0380013429.01.T01

MSSKKVCIRVATFGDVLDWNSNNNLVTRPNIGTLWKKLIHVADNCSGCIVAYLLSEGEEEEEGNDHFSIASLFVHHTYRKRGIATDLITAAQNTMEKVRFVSLYSVIILFFGLGLSLVVHVRKSNSAALGLFQKMGTHFTRSQTWILPQEEEDLLQPVKIRC*