Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013522.01.T01 | QJU69413.1 | 98.571 | 70 | 1 | 0 | 1 | 70 | 1 | 70 | 1.12E-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013522.01.T01 | A0A0P0X0C0 | 60.938 | 64 | 25 | 0 | 7 | 70 | 5 | 68 | 1.46E-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013522.01.T01 | A0A6M5K8M6 | 98.571 | 70 | 1 | 0 | 1 | 70 | 1 | 70 | 5.36e-42 | 145 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380013522.01.T01 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013522.01.T01 | MTR_3g450310 | 97.143 | 70 | 2 | 0 | 1 | 70 | 1 | 70 | 3.55e-45 | 144 |
| MsG0380013522.01.T01 | MTR_8g086410 | 54.054 | 74 | 34 | 0 | 4 | 77 | 94 | 167 | 5.88e-23 | 90.9 |
| MsG0380013522.01.T01 | MTR_8g086410 | 54.054 | 74 | 34 | 0 | 4 | 77 | 96 | 169 | 5.95e-23 | 90.9 |
| MsG0380013522.01.T01 | MTR_8g086410 | 58.209 | 67 | 28 | 0 | 4 | 70 | 96 | 162 | 8.84e-23 | 90.5 |
| MsG0380013522.01.T01 | MTR_2g084230 | 57.971 | 69 | 29 | 0 | 9 | 77 | 87 | 155 | 1.01e-22 | 89.4 |
| MsG0380013522.01.T01 | MTR_2g016220 | 53.947 | 76 | 35 | 0 | 2 | 77 | 72 | 147 | 1.21e-22 | 89.7 |
| MsG0380013522.01.T01 | MTR_2g016220 | 53.947 | 76 | 35 | 0 | 2 | 77 | 72 | 147 | 1.37e-22 | 89.7 |
| MsG0380013522.01.T01 | MTR_2g084230 | 57.971 | 69 | 29 | 0 | 9 | 77 | 87 | 155 | 1.96e-22 | 89.4 |
| MsG0380013522.01.T01 | MTR_2g023580 | 63.333 | 60 | 22 | 0 | 11 | 70 | 47 | 106 | 2.22e-22 | 87.0 |
| MsG0380013522.01.T01 | MTR_0223s0040 | 60.294 | 68 | 26 | 1 | 4 | 70 | 2 | 69 | 4.60e-22 | 87.0 |
| MsG0380013522.01.T01 | MTR_2g016220 | 57.353 | 68 | 29 | 0 | 2 | 69 | 72 | 139 | 1.48e-21 | 87.0 |
| MsG0380013522.01.T01 | MTR_1g112370 | 60.656 | 61 | 24 | 0 | 10 | 70 | 13 | 73 | 5.64e-21 | 84.7 |
| MsG0380013522.01.T01 | MTR_7g069660 | 52.857 | 70 | 33 | 0 | 1 | 70 | 53 | 122 | 5.93e-21 | 85.1 |
| MsG0380013522.01.T01 | MTR_1g080330 | 56.061 | 66 | 28 | 1 | 4 | 69 | 161 | 225 | 1.49e-19 | 80.5 |
| MsG0380013522.01.T01 | MTR_1g080330 | 56.061 | 66 | 28 | 1 | 4 | 69 | 161 | 225 | 2.61e-19 | 80.9 |
| MsG0380013522.01.T01 | MTR_7g115530 | 61.538 | 52 | 20 | 0 | 19 | 70 | 218 | 269 | 9.20e-19 | 78.6 |
| MsG0380013522.01.T01 | MTR_7g115530 | 60.377 | 53 | 21 | 0 | 19 | 71 | 218 | 270 | 1.64e-18 | 77.4 |
| MsG0380013522.01.T01 | MTR_7g115530 | 60.784 | 51 | 20 | 0 | 19 | 69 | 218 | 268 | 3.14e-18 | 77.0 |
| MsG0380013522.01.T01 | MTR_7g115530 | 60.784 | 51 | 20 | 0 | 19 | 69 | 218 | 268 | 4.58e-18 | 77.0 |
| MsG0380013522.01.T01 | MTR_7g115530 | 60.784 | 51 | 20 | 0 | 19 | 69 | 218 | 268 | 5.23e-18 | 77.0 |
| MsG0380013522.01.T01 | MTR_7g115530 | 60.784 | 51 | 20 | 0 | 19 | 69 | 218 | 268 | 5.75e-18 | 77.0 |
| MsG0380013522.01.T01 | MTR_7g098250 | 56.604 | 53 | 23 | 0 | 17 | 69 | 260 | 312 | 2.34e-17 | 75.5 |
| MsG0380013522.01.T01 | MTR_5g041350 | 56.863 | 51 | 22 | 0 | 19 | 69 | 15 | 65 | 9.06e-17 | 73.6 |
| MsG0380013522.01.T01 | MTR_6g032990 | 54.902 | 51 | 23 | 0 | 19 | 69 | 42 | 92 | 7.67e-16 | 71.2 |
| MsG0380013522.01.T01 | MTR_6g444980 | 62.745 | 51 | 19 | 0 | 19 | 69 | 35 | 85 | 1.14e-15 | 70.5 |
| MsG0380013522.01.T01 | MTR_6g444980 | 62.745 | 51 | 19 | 0 | 19 | 69 | 35 | 85 | 1.31e-15 | 70.5 |
| MsG0380013522.01.T01 | MTR_5g027440 | 47.826 | 69 | 29 | 1 | 8 | 69 | 7 | 75 | 1.43e-15 | 69.7 |
| MsG0380013522.01.T01 | MTR_7g093030 | 56.604 | 53 | 23 | 0 | 17 | 69 | 210 | 262 | 3.25e-15 | 68.9 |
| MsG0380013522.01.T01 | MTR_2g086450 | 48.485 | 66 | 33 | 1 | 4 | 69 | 31 | 95 | 3.55e-15 | 69.3 |
| MsG0380013522.01.T01 | MTR_7g093030 | 56.604 | 53 | 23 | 0 | 17 | 69 | 210 | 262 | 4.30e-15 | 68.9 |
| MsG0380013522.01.T01 | MTR_1g090670 | 60.784 | 51 | 20 | 0 | 19 | 69 | 44 | 94 | 4.44e-15 | 68.6 |
| MsG0380013522.01.T01 | MTR_8g066310 | 54.717 | 53 | 24 | 0 | 18 | 70 | 172 | 224 | 9.47e-15 | 67.8 |
| MsG0380013522.01.T01 | MTR_6g071625 | 52.830 | 53 | 25 | 0 | 18 | 70 | 201 | 253 | 1.03e-14 | 67.8 |
| MsG0380013522.01.T01 | MTR_1g021520 | 44.286 | 70 | 37 | 1 | 1 | 70 | 110 | 177 | 1.33e-14 | 67.0 |
| MsG0380013522.01.T01 | MTR_2g027800 | 58.824 | 51 | 21 | 0 | 19 | 69 | 39 | 89 | 1.46e-14 | 67.4 |
| MsG0380013522.01.T01 | MTR_2g027800 | 58.824 | 51 | 21 | 0 | 19 | 69 | 39 | 89 | 1.67e-14 | 67.0 |
| MsG0380013522.01.T01 | MTR_2g027860 | 61.224 | 49 | 19 | 0 | 21 | 69 | 51 | 99 | 1.88e-14 | 67.0 |
| MsG0380013522.01.T01 | MTR_1g053835 | 47.692 | 65 | 34 | 0 | 5 | 69 | 244 | 308 | 2.79e-14 | 66.6 |
| MsG0380013522.01.T01 | MTR_5g029470 | 52.830 | 53 | 25 | 0 | 18 | 70 | 218 | 270 | 3.31e-14 | 66.6 |
| MsG0380013522.01.T01 | MTR_1g053830 | 52.830 | 53 | 25 | 0 | 17 | 69 | 16 | 68 | 3.46e-14 | 62.8 |
| MsG0380013522.01.T01 | MTR_3g064840 | 52.830 | 53 | 25 | 0 | 18 | 70 | 273 | 325 | 3.49e-14 | 66.6 |
| MsG0380013522.01.T01 | MTR_7g088070 | 46.970 | 66 | 35 | 0 | 4 | 69 | 35 | 100 | 6.68e-14 | 65.1 |
| MsG0380013522.01.T01 | MTR_7g088070 | 46.970 | 66 | 35 | 0 | 4 | 69 | 35 | 100 | 6.88e-14 | 65.1 |
| MsG0380013522.01.T01 | MTR_4g081710 | 50.980 | 51 | 25 | 0 | 19 | 69 | 17 | 67 | 3.25e-13 | 63.5 |
| MsG0380013522.01.T01 | MTR_1g053800 | 61.224 | 49 | 19 | 0 | 21 | 69 | 179 | 227 | 4.11e-13 | 63.2 |
| MsG0380013522.01.T01 | MTR_7g068600 | 50.000 | 68 | 28 | 2 | 5 | 69 | 2 | 66 | 1.00e-12 | 61.6 |
| MsG0380013522.01.T01 | MTR_4g021790 | 50.847 | 59 | 28 | 1 | 11 | 69 | 160 | 217 | 2.87e-12 | 60.5 |
| MsG0380013522.01.T01 | MTR_4g021855 | 54.717 | 53 | 23 | 1 | 17 | 69 | 166 | 217 | 3.83e-12 | 60.5 |
| MsG0380013522.01.T01 | MTR_7g093010 | 57.143 | 49 | 21 | 0 | 21 | 69 | 215 | 263 | 4.68e-12 | 60.5 |
| MsG0380013522.01.T01 | MTR_1g093080 | 39.024 | 82 | 49 | 1 | 3 | 84 | 196 | 276 | 7.56e-12 | 59.7 |
| MsG0380013522.01.T01 | MTR_1g032570 | 56.604 | 53 | 22 | 1 | 17 | 69 | 198 | 249 | 2.48e-11 | 58.5 |
| MsG0380013522.01.T01 | MTR_4g086835 | 49.057 | 53 | 27 | 0 | 17 | 69 | 272 | 324 | 2.63e-11 | 58.2 |
| MsG0380013522.01.T01 | MTR_1g032570 | 56.604 | 53 | 22 | 1 | 17 | 69 | 129 | 180 | 2.71e-11 | 58.2 |
| MsG0380013522.01.T01 | MTR_4g064730 | 49.180 | 61 | 30 | 1 | 9 | 69 | 121 | 180 | 7.25e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013522.01.T01 | AT2G40260 | 55.422 | 83 | 31 | 2 | 5 | 81 | 67 | 149 | 1.28e-22 | 90.1 |
| MsG0380013522.01.T01 | AT2G02060 | 61.194 | 67 | 26 | 0 | 4 | 70 | 14 | 80 | 5.17e-22 | 86.7 |
| MsG0380013522.01.T01 | AT2G02060 | 61.194 | 67 | 26 | 0 | 4 | 70 | 14 | 80 | 5.17e-22 | 86.7 |
| MsG0380013522.01.T01 | AT2G38300 | 53.425 | 73 | 34 | 0 | 7 | 79 | 42 | 114 | 2.75e-21 | 85.9 |
| MsG0380013522.01.T01 | AT2G42660 | 55.224 | 67 | 30 | 0 | 11 | 77 | 42 | 108 | 5.20e-21 | 84.0 |
| MsG0380013522.01.T01 | AT4G04605 | 60.000 | 60 | 24 | 0 | 11 | 70 | 6 | 65 | 6.92e-21 | 82.8 |
| MsG0380013522.01.T01 | AT1G14600 | 57.971 | 69 | 29 | 0 | 2 | 70 | 6 | 74 | 7.93e-21 | 83.2 |
| MsG0380013522.01.T01 | AT4G04555 | 56.667 | 60 | 26 | 0 | 11 | 70 | 6 | 65 | 3.80e-17 | 70.5 |
| MsG0380013522.01.T01 | AT4G04580 | 51.667 | 60 | 29 | 0 | 11 | 70 | 6 | 65 | 7.19e-17 | 71.2 |
| MsG0380013522.01.T01 | AT4G13640 | 62.745 | 51 | 19 | 0 | 19 | 69 | 37 | 87 | 8.70e-17 | 73.2 |
| MsG0380013522.01.T01 | AT4G13640 | 62.745 | 51 | 19 | 0 | 19 | 69 | 37 | 87 | 9.22e-17 | 73.2 |
| MsG0380013522.01.T01 | AT4G28610 | 61.224 | 49 | 19 | 0 | 21 | 69 | 227 | 275 | 9.49e-17 | 73.9 |
| MsG0380013522.01.T01 | AT3G24120 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 1.95e-16 | 72.4 |
| MsG0380013522.01.T01 | AT3G24120 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 2.12e-16 | 72.0 |
| MsG0380013522.01.T01 | AT2G01060 | 53.623 | 69 | 28 | 2 | 1 | 69 | 1 | 65 | 4.21e-16 | 71.2 |
| MsG0380013522.01.T01 | AT5G45580 | 58.824 | 51 | 21 | 0 | 19 | 69 | 7 | 57 | 7.48e-16 | 70.5 |
| MsG0380013522.01.T01 | AT5G45580 | 58.824 | 51 | 21 | 0 | 19 | 69 | 23 | 73 | 8.09e-16 | 70.5 |
| MsG0380013522.01.T01 | AT3G12730 | 60.784 | 51 | 20 | 0 | 19 | 69 | 23 | 73 | 8.27e-16 | 69.7 |
| MsG0380013522.01.T01 | AT1G79430 | 62.745 | 51 | 19 | 0 | 19 | 69 | 34 | 84 | 1.07e-15 | 70.5 |
| MsG0380013522.01.T01 | AT5G18240 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.44e-15 | 70.5 |
| MsG0380013522.01.T01 | AT5G18240 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.44e-15 | 70.5 |
| MsG0380013522.01.T01 | AT5G18240 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.46e-15 | 70.5 |
| MsG0380013522.01.T01 | AT5G18240 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.46e-15 | 70.5 |
| MsG0380013522.01.T01 | AT5G18240 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 1.47e-15 | 70.5 |
| MsG0380013522.01.T01 | AT3G04030 | 54.902 | 51 | 23 | 0 | 19 | 69 | 45 | 95 | 1.99e-15 | 70.1 |
| MsG0380013522.01.T01 | AT3G04030 | 54.902 | 51 | 23 | 0 | 19 | 69 | 45 | 95 | 2.34e-15 | 69.7 |
| MsG0380013522.01.T01 | AT5G29000 | 50.000 | 64 | 31 | 1 | 6 | 69 | 219 | 281 | 3.60e-15 | 68.9 |
| MsG0380013522.01.T01 | AT2G20400 | 59.184 | 49 | 20 | 0 | 21 | 69 | 233 | 281 | 4.79e-15 | 68.9 |
| MsG0380013522.01.T01 | AT2G20400 | 59.184 | 49 | 20 | 0 | 21 | 69 | 233 | 281 | 4.92e-15 | 68.9 |
| MsG0380013522.01.T01 | AT5G29000 | 50.000 | 64 | 31 | 1 | 6 | 69 | 176 | 238 | 5.55e-15 | 68.6 |
| MsG0380013522.01.T01 | AT5G29000 | 50.000 | 64 | 31 | 1 | 6 | 69 | 176 | 238 | 5.55e-15 | 68.6 |
| MsG0380013522.01.T01 | AT5G29000 | 50.000 | 64 | 31 | 1 | 6 | 69 | 219 | 281 | 5.95e-15 | 68.6 |
| MsG0380013522.01.T01 | AT5G42630 | 50.943 | 53 | 26 | 0 | 18 | 70 | 104 | 156 | 7.18e-15 | 67.0 |
| MsG0380013522.01.T01 | AT1G32240 | 52.830 | 53 | 25 | 0 | 18 | 70 | 212 | 264 | 1.54e-14 | 67.4 |
| MsG0380013522.01.T01 | AT5G42630 | 50.943 | 53 | 26 | 0 | 18 | 70 | 104 | 156 | 1.67e-14 | 66.6 |
| MsG0380013522.01.T01 | AT1G32240 | 52.830 | 53 | 25 | 0 | 18 | 70 | 212 | 264 | 1.92e-14 | 67.4 |
| MsG0380013522.01.T01 | AT3G04450 | 52.830 | 53 | 24 | 1 | 17 | 69 | 237 | 288 | 1.95e-14 | 67.0 |
| MsG0380013522.01.T01 | AT5G16560 | 52.830 | 53 | 25 | 0 | 18 | 70 | 218 | 270 | 2.51e-14 | 67.0 |
| MsG0380013522.01.T01 | AT3G04450 | 52.830 | 53 | 24 | 1 | 17 | 69 | 237 | 288 | 2.86e-14 | 66.6 |
| MsG0380013522.01.T01 | AT3G04450 | 52.830 | 53 | 24 | 1 | 17 | 69 | 197 | 248 | 3.17e-14 | 66.6 |
| MsG0380013522.01.T01 | AT3G04450 | 52.830 | 53 | 24 | 1 | 17 | 69 | 197 | 248 | 3.17e-14 | 66.6 |
| MsG0380013522.01.T01 | AT2G06020 | 48.214 | 56 | 29 | 0 | 14 | 69 | 81 | 136 | 3.39e-14 | 66.2 |
| MsG0380013522.01.T01 | AT4G17695 | 49.057 | 53 | 27 | 0 | 18 | 70 | 163 | 215 | 6.64e-14 | 65.5 |
| MsG0380013522.01.T01 | AT5G06800 | 59.184 | 49 | 20 | 0 | 21 | 69 | 194 | 242 | 9.27e-14 | 64.7 |
| MsG0380013522.01.T01 | AT3G13040 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.14e-13 | 65.1 |
| MsG0380013522.01.T01 | AT3G13040 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.14e-13 | 65.1 |
| MsG0380013522.01.T01 | AT3G13040 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.14e-13 | 65.1 |
| MsG0380013522.01.T01 | AT5G06800 | 59.184 | 49 | 20 | 0 | 21 | 69 | 194 | 242 | 1.56e-13 | 64.7 |
| MsG0380013522.01.T01 | AT5G06800 | 59.184 | 49 | 20 | 0 | 21 | 69 | 194 | 242 | 1.62e-13 | 64.7 |
| MsG0380013522.01.T01 | AT1G69580 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.59e-13 | 63.9 |
| MsG0380013522.01.T01 | AT1G69580 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.61e-13 | 63.9 |
| MsG0380013522.01.T01 | AT3G04030 | 50.980 | 51 | 24 | 1 | 19 | 69 | 45 | 94 | 1.71e-12 | 61.6 |
| MsG0380013522.01.T01 | AT4G37180 | 45.070 | 71 | 33 | 1 | 18 | 88 | 209 | 273 | 1.12e-11 | 58.9 |
| MsG0380013522.01.T01 | AT1G49190 | 44.828 | 58 | 29 | 1 | 16 | 70 | 417 | 474 | 2.50e-11 | 58.5 |
| MsG0380013522.01.T01 | AT1G49560 | 46.875 | 64 | 33 | 1 | 21 | 84 | 194 | 256 | 2.97e-11 | 57.8 |
| MsG0380013522.01.T01 | AT5G44190 | 55.769 | 52 | 22 | 1 | 18 | 69 | 146 | 196 | 3.90e-11 | 57.8 |
| MsG0380013522.01.T01 | AT5G44190 | 55.769 | 52 | 22 | 1 | 18 | 69 | 146 | 196 | 4.26e-11 | 57.8 |
| MsG0380013522.01.T01 | AT1G25550 | 42.373 | 59 | 34 | 0 | 12 | 70 | 202 | 260 | 4.28e-11 | 57.4 |
| MsG0380013522.01.T01 | AT3G62670 | 47.143 | 70 | 31 | 2 | 6 | 69 | 196 | 265 | 8.41e-11 | 57.0 |
Find 15 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATATTCAAAATGTGTTT+AGG | 0.358434 | 3:-39903792 | None:intergenic |
| ACAAAGTATTGATGAAGTTC+CGG | 0.415452 | 3:-39903452 | None:intergenic |
| GTTCAAACTGTTGAAAGTCT+TGG | 0.422209 | 3:+39903473 | MsG0380013522.01.T01:CDS |
| AACAATAACTCTAAGAGAAG+TGG | 0.520690 | 3:+39903383 | MsG0380013522.01.T01:CDS |
| TTGAATATGATGCAAGTGAA+GGG | 0.529830 | 3:+39903804 | MsG0380013522.01.T01:CDS |
| CAAAACAGCCACGCCTTCGA+TGG | 0.531209 | 3:+39903426 | MsG0380013522.01.T01:CDS |
| TTTGAATATGATGCAAGTGA+AGG | 0.533245 | 3:+39903803 | MsG0380013522.01.T01:CDS |
| TCCGGTGTCCATCGAAGGCG+TGG | 0.541150 | 3:-39903434 | None:intergenic |
| CCATATTAAAAGTCATCTCC+AGG | 0.551481 | 3:+39903839 | MsG0380013522.01.T01:CDS |
| GAAGTTCCGGTGTCCATCGA+AGG | 0.585063 | 3:-39903439 | None:intergenic |
| CAAACTGTTGAAAGTCTTGG+TGG | 0.585108 | 3:+39903476 | MsG0380013522.01.T01:CDS |
| AAAATCTGTATATCTAACTG+AGG | 0.600401 | 3:-39904510 | None:intergenic |
| GCCACGCCTTCGATGGACAC+CGG | 0.606915 | 3:+39903433 | MsG0380013522.01.T01:CDS |
| AAATCTGTATATCTAACTGA+GGG | 0.627262 | 3:-39904509 | None:intergenic |
| TGAATATGATGCAAGTGAAG+GGG | 0.650743 | 3:+39903805 | MsG0380013522.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGTATAAGTATTAAGA+CGG | + | Chr3:39903704-39903723 | MsG0380013522.01.T01:intron | 15.0% |
| !! | TTGTATATATTCTAATAATG+AGG | - | Chr3:39903922-39903941 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTCTTTTAATCA+TGG | + | Chr3:39903652-39903671 | MsG0380013522.01.T01:intron | 15.0% |
| !!! | TTTTCATAATATGTGAATAT+TGG | + | Chr3:39904060-39904079 | MsG0380013522.01.T01:intron | 15.0% |
| !! | AATGAGGATTAAATTAATTG+AGG | - | Chr3:39903906-39903925 | None:intergenic | 20.0% |
| !! | ATCATATTCAAAATGTGTTT+AGG | - | Chr3:39903795-39903814 | None:intergenic | 20.0% |
| !! | ATGATTAACAAAGCATATTA+TGG | - | Chr3:39903603-39903622 | None:intergenic | 20.0% |
| !! | CAATACCTTAATTACATTAA+GGG | - | Chr3:39904484-39904503 | None:intergenic | 20.0% |
| !! | TTAAAAGTAAAAATTAGACC+TGG | + | Chr3:39903996-39904015 | MsG0380013522.01.T01:intron | 20.0% |
| !!! | ATGATCATCATGTTTTATAT+AGG | + | Chr3:39903521-39903540 | MsG0380013522.01.T01:intron | 20.0% |
| !!! | ATTTTGTCATCAAAAGTAAA+AGG | - | Chr3:39904288-39904307 | None:intergenic | 20.0% |
| !!! | TCTTTTGATAATGAAATCAT+GGG | + | Chr3:39904131-39904150 | MsG0380013522.01.T01:intron | 20.0% |
| !!! | TGATCATCATGTTTTATATA+GGG | + | Chr3:39903522-39903541 | MsG0380013522.01.T01:intron | 20.0% |
| !!! | TTAATCATGGTTTTAAATTG+CGG | + | Chr3:39903665-39903684 | MsG0380013522.01.T01:intron | 20.0% |
| !!! | TTCTTATTTTTGATAGACTA+TGG | + | Chr3:39904022-39904041 | MsG0380013522.01.T01:intron | 20.0% |
| !!! | TTCTTTTGATAATGAAATCA+TGG | + | Chr3:39904130-39904149 | MsG0380013522.01.T01:intron | 20.0% |
| ! | AAAATCTGTATATCTAACTG+AGG | - | Chr3:39904513-39904532 | None:intergenic | 25.0% |
| ! | AAATCTGTATATCTAACTGA+GGG | - | Chr3:39904512-39904531 | None:intergenic | 25.0% |
| ! | AGGATTAAATTAATTGAGGT+TGG | - | Chr3:39903902-39903921 | None:intergenic | 25.0% |
| ! | AGGTTGGATCAAATATATAT+GGG | - | Chr3:39903886-39903905 | None:intergenic | 25.0% |
| ! | ATATGAGATCTCTTAATTGA+AGG | - | Chr3:39903573-39903592 | None:intergenic | 25.0% |
| ! | CCAATACCTTAATTACATTA+AGG | - | Chr3:39904485-39904504 | None:intergenic | 25.0% |
| ! | CCTTAATGTAATTAAGGTAT+TGG | + | Chr3:39904482-39904501 | MsG0380013522.01.T01:intron | 25.0% |
| ! | CTAATCCCTTAATGTAATTA+AGG | + | Chr3:39904476-39904495 | MsG0380013522.01.T01:intron | 25.0% |
| ! | GGAATATATAGAACTAAAGT+AGG | - | Chr3:39904093-39904112 | None:intergenic | 25.0% |
| ! | TATCAAAAATAAGAAGATCC+AGG | - | Chr3:39904017-39904036 | None:intergenic | 25.0% |
| ! | TATGAGATCTCTTAATTGAA+GGG | - | Chr3:39903572-39903591 | None:intergenic | 25.0% |
| !! | AAGAAAGAGAATTTTCCATA+AGG | - | Chr3:39904115-39904134 | None:intergenic | 25.0% |
| !! | AGAAAGAGAATTTTCCATAA+GGG | - | Chr3:39904114-39904133 | None:intergenic | 25.0% |
| !! | TAGTTCTATATATTCCCTTA+TGG | + | Chr3:39904097-39904116 | MsG0380013522.01.T01:intron | 25.0% |
| !! | TTTGCAAATTAATTTTGCAG+AGG | + | Chr3:39903764-39903783 | MsG0380013522.01.T01:intron | 25.0% |
| AACGTTTGTGAGATATACAT+GGG | - | Chr3:39904253-39904272 | None:intergenic | 30.0% | |
| AAGAAACAAAATCCAGTCTA+GGG | + | Chr3:39904158-39904177 | MsG0380013522.01.T01:intron | 30.0% | |
| ACAATTACTACAGTAGTATG+TGG | + | Chr3:39904198-39904217 | MsG0380013522.01.T01:intron | 30.0% | |
| ACATGAACTATATATGTACC+TGG | - | Chr3:39903860-39903879 | None:intergenic | 30.0% | |
| GAGGTTGGATCAAATATATA+TGG | - | Chr3:39903887-39903906 | None:intergenic | 30.0% | |
| TATAGAACTAAAGTAGGAAC+AGG | - | Chr3:39904087-39904106 | None:intergenic | 30.0% | |
| TTGAATATGATGCAAGTGAA+GGG | + | Chr3:39903804-39903823 | MsG0380013522.01.T01:CDS | 30.0% | |
| TTTGAATATGATGCAAGTGA+AGG | + | Chr3:39903803-39903822 | MsG0380013522.01.T01:CDS | 30.0% | |
| ! | AACAATAACTCTAAGAGAAG+TGG | + | Chr3:39903383-39903402 | MsG0380013522.01.T01:CDS | 30.0% |
| ! | CTGGAGATGACTTTTAATAT+GGG | - | Chr3:39903841-39903860 | None:intergenic | 30.0% |
| !! | ACAAAGTATTGATGAAGTTC+CGG | - | Chr3:39903455-39903474 | None:intergenic | 30.0% |
| AAAGTAACAACGTAGAGAAG+TGG | - | Chr3:39904346-39904365 | None:intergenic | 35.0% | |
| AAGTAACAACGTAGAGAAGT+GGG | - | Chr3:39904345-39904364 | None:intergenic | 35.0% | |
| AGAGAAGTGGGGTTTATAAT+GGG | - | Chr3:39904333-39904352 | None:intergenic | 35.0% | |
| CAACGTTTGTGAGATATACA+TGG | - | Chr3:39904254-39904273 | None:intergenic | 35.0% | |
| CCATATTAAAAGTCATCTCC+AGG | + | Chr3:39903839-39903858 | MsG0380013522.01.T01:CDS | 35.0% | |
| GAAGAAACAAAATCCAGTCT+AGG | + | Chr3:39904157-39904176 | MsG0380013522.01.T01:intron | 35.0% | |
| GTTCAAACTGTTGAAAGTCT+TGG | + | Chr3:39903473-39903492 | MsG0380013522.01.T01:CDS | 35.0% | |
| TAGAGAAGTGGGGTTTATAA+TGG | - | Chr3:39904334-39904353 | None:intergenic | 35.0% | |
| TGAATATGATGCAAGTGAAG+GGG | + | Chr3:39903805-39903824 | MsG0380013522.01.T01:CDS | 35.0% | |
| ! | CCTGGAGATGACTTTTAATA+TGG | - | Chr3:39903842-39903861 | None:intergenic | 35.0% |
| AGTAACAACGTAGAGAAGTG+GGG | - | Chr3:39904344-39904363 | None:intergenic | 40.0% | |
| CAAACTGTTGAAAGTCTTGG+TGG | + | Chr3:39903476-39903495 | MsG0380013522.01.T01:CDS | 40.0% | |
| CTGCAAAAAATACCCTAGAC+TGG | - | Chr3:39904173-39904192 | None:intergenic | 40.0% | |
| !!! | GACGGTGAATTTTTTCGCTA+TGG | + | Chr3:39903722-39903741 | MsG0380013522.01.T01:intron | 40.0% |
| !!! | GGCGTGGCTGTTTTGATTTG+TGG | - | Chr3:39903421-39903440 | None:intergenic | 50.0% |
| CAAAACAGCCACGCCTTCGA+TGG | + | Chr3:39903426-39903445 | MsG0380013522.01.T01:CDS | 55.0% | |
| GAAGTTCCGGTGTCCATCGA+AGG | - | Chr3:39903442-39903461 | None:intergenic | 55.0% | |
| GCCACGCCTTCGATGGACAC+CGG | + | Chr3:39903433-39903452 | MsG0380013522.01.T01:CDS | 65.0% | |
| TCCGGTGTCCATCGAAGGCG+TGG | - | Chr3:39903437-39903456 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 39903377 | 39904569 | 39903377 | ID=MsG0380013522.01;Name=MsG0380013522.01 |
| Chr3 | mRNA | 39903377 | 39904569 | 39903377 | ID=MsG0380013522.01.T01;Parent=MsG0380013522.01;Name=MsG0380013522.01.T01;_AED=0.47;_eAED=0.63;_QI=0|0|0|1|0|0|3|0|92 |
| Chr3 | exon | 39903377 | 39903506 | 39903377 | ID=MsG0380013522.01.T01:exon:2835;Parent=MsG0380013522.01.T01 |
| Chr3 | exon | 39903784 | 39903860 | 39903784 | ID=MsG0380013522.01.T01:exon:2836;Parent=MsG0380013522.01.T01 |
| Chr3 | exon | 39904498 | 39904569 | 39904498 | ID=MsG0380013522.01.T01:exon:2837;Parent=MsG0380013522.01.T01 |
| Chr3 | CDS | 39903377 | 39903506 | 39903377 | ID=MsG0380013522.01.T01:cds;Parent=MsG0380013522.01.T01 |
| Chr3 | CDS | 39903784 | 39903860 | 39903784 | ID=MsG0380013522.01.T01:cds;Parent=MsG0380013522.01.T01 |
| Chr3 | CDS | 39904498 | 39904569 | 39904498 | ID=MsG0380013522.01.T01:cds;Parent=MsG0380013522.01.T01 |
| Gene Sequence |
| Protein sequence |
