Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013527.01.T01 | XP_004516317.1 | 72.509 | 291 | 75 | 1 | 27 | 312 | 94 | 384 | 1.06E-145 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013527.01.T01 | A0A1S2Z7B1 | 72.509 | 291 | 75 | 1 | 27 | 312 | 94 | 384 | 5.05e-146 | 425 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380013527.01.T01 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013527.01.T01 | MTR_3g450500 | 73.540 | 291 | 72 | 1 | 27 | 312 | 85 | 375 | 4.77e-147 | 418 |
| MsG0380013527.01.T01 | MTR_4g007490 | 66.438 | 292 | 90 | 3 | 27 | 312 | 84 | 373 | 4.72e-131 | 378 |
| MsG0380013527.01.T01 | MTR_2g019810 | 36.755 | 302 | 179 | 5 | 8 | 307 | 66 | 357 | 1.75e-53 | 179 |
| MsG0380013527.01.T01 | MTR_4g119550 | 35.192 | 287 | 182 | 3 | 27 | 311 | 98 | 382 | 4.61e-53 | 179 |
| MsG0380013527.01.T01 | MTR_2g019840 | 38.246 | 285 | 171 | 4 | 27 | 309 | 90 | 371 | 8.30e-53 | 178 |
| MsG0380013527.01.T01 | MTR_2g436400 | 35.664 | 286 | 181 | 2 | 27 | 311 | 96 | 379 | 6.37e-49 | 167 |
| MsG0380013527.01.T01 | MTR_2g437160 | 34.138 | 290 | 186 | 3 | 24 | 310 | 109 | 396 | 1.27e-47 | 165 |
| MsG0380013527.01.T01 | MTR_2g437030 | 36.237 | 287 | 178 | 4 | 27 | 311 | 175 | 458 | 4.37e-47 | 165 |
| MsG0380013527.01.T01 | MTR_2g437260 | 32.982 | 285 | 190 | 1 | 27 | 310 | 83 | 367 | 6.14e-47 | 162 |
| MsG0380013527.01.T01 | MTR_4g119580 | 32.624 | 282 | 187 | 2 | 29 | 309 | 93 | 372 | 2.08e-46 | 161 |
| MsG0380013527.01.T01 | MTR_2g437040 | 33.217 | 286 | 188 | 2 | 27 | 311 | 89 | 372 | 2.48e-46 | 160 |
| MsG0380013527.01.T01 | MTR_2g436460 | 30.820 | 305 | 200 | 4 | 8 | 310 | 82 | 377 | 1.22e-44 | 156 |
| MsG0380013527.01.T01 | MTR_2g437100 | 33.101 | 287 | 184 | 4 | 27 | 307 | 109 | 393 | 1.72e-43 | 154 |
| MsG0380013527.01.T01 | MTR_2g437150 | 32.414 | 290 | 188 | 4 | 27 | 310 | 104 | 391 | 7.80e-43 | 152 |
| MsG0380013527.01.T01 | MTR_2g437020 | 35.484 | 279 | 175 | 4 | 27 | 302 | 88 | 364 | 7.95e-43 | 151 |
| MsG0380013527.01.T01 | MTR_2g437080 | 33.219 | 292 | 180 | 3 | 27 | 311 | 89 | 372 | 8.47e-43 | 151 |
| MsG0380013527.01.T01 | MTR_2g437180 | 31.597 | 288 | 189 | 3 | 27 | 310 | 98 | 381 | 9.33e-43 | 152 |
| MsG0380013527.01.T01 | MTR_4g120380 | 30.035 | 283 | 195 | 2 | 27 | 308 | 91 | 371 | 2.36e-41 | 147 |
| MsG0380013527.01.T01 | MTR_2g437060 | 33.333 | 285 | 187 | 3 | 27 | 310 | 104 | 386 | 2.71e-41 | 148 |
| MsG0380013527.01.T01 | MTR_2g437170 | 31.379 | 290 | 191 | 4 | 27 | 310 | 104 | 391 | 6.38e-41 | 147 |
| MsG0380013527.01.T01 | MTR_2g437960 | 30.634 | 284 | 191 | 3 | 27 | 306 | 102 | 383 | 1.63e-40 | 146 |
| MsG0380013527.01.T01 | MTR_2g437960 | 30.634 | 284 | 191 | 3 | 27 | 306 | 102 | 383 | 2.99e-40 | 145 |
| MsG0380013527.01.T01 | MTR_2g437240 | 28.746 | 327 | 190 | 5 | 27 | 312 | 79 | 403 | 3.54e-40 | 145 |
| MsG0380013527.01.T01 | MTR_2g436440 | 31.119 | 286 | 194 | 2 | 27 | 311 | 95 | 378 | 5.77e-40 | 144 |
| MsG0380013527.01.T01 | MTR_2g437120 | 31.597 | 288 | 190 | 4 | 27 | 310 | 100 | 384 | 4.54e-39 | 142 |
| MsG0380013527.01.T01 | MTR_2g437200 | 30.312 | 320 | 182 | 4 | 27 | 307 | 79 | 396 | 1.21e-38 | 140 |
| MsG0380013527.01.T01 | MTR_8g081000 | 28.621 | 290 | 203 | 2 | 23 | 309 | 99 | 387 | 1.34e-38 | 140 |
| MsG0380013527.01.T01 | MTR_2g438020 | 28.834 | 326 | 191 | 3 | 24 | 310 | 115 | 438 | 1.50e-38 | 142 |
| MsG0380013527.01.T01 | MTR_8g081000 | 28.621 | 290 | 203 | 2 | 23 | 309 | 99 | 387 | 1.72e-38 | 140 |
| MsG0380013527.01.T01 | MTR_8g081000 | 28.621 | 290 | 203 | 2 | 23 | 309 | 99 | 387 | 2.03e-38 | 140 |
| MsG0380013527.01.T01 | MTR_2g076320 | 31.250 | 288 | 192 | 3 | 27 | 310 | 99 | 384 | 3.16e-37 | 137 |
| MsG0380013527.01.T01 | MTR_2g437990 | 30.662 | 287 | 194 | 2 | 27 | 310 | 99 | 383 | 2.41e-36 | 135 |
| MsG0380013527.01.T01 | MTR_4g120380 | 29.389 | 262 | 182 | 2 | 27 | 287 | 91 | 350 | 3.45e-36 | 135 |
| MsG0380013527.01.T01 | MTR_8g080990 | 28.669 | 293 | 205 | 2 | 23 | 312 | 86 | 377 | 9.44e-36 | 132 |
| MsG0380013527.01.T01 | MTR_2g438010 | 29.861 | 288 | 196 | 4 | 27 | 310 | 119 | 404 | 2.14e-35 | 132 |
| MsG0380013527.01.T01 | MTR_2g437130 | 29.310 | 290 | 202 | 2 | 23 | 311 | 86 | 373 | 3.56e-35 | 131 |
| MsG0380013527.01.T01 | MTR_2g437090 | 35.220 | 159 | 103 | 0 | 153 | 311 | 2 | 160 | 1.91e-27 | 105 |
| MsG0380013527.01.T01 | MTR_4g119570 | 27.309 | 249 | 145 | 3 | 62 | 309 | 18 | 231 | 4.65e-27 | 106 |
| MsG0380013527.01.T01 | MTR_2g437160 | 31.905 | 210 | 129 | 3 | 115 | 310 | 96 | 305 | 2.51e-26 | 106 |
| MsG0380013527.01.T01 | MTR_2g437940 | 28.014 | 282 | 177 | 4 | 29 | 310 | 100 | 355 | 1.75e-25 | 105 |
| MsG0380013527.01.T01 | MTR_8g012210 | 23.755 | 261 | 192 | 5 | 52 | 307 | 90 | 348 | 7.28e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013527.01.T01 | AT5G07900 | 37.631 | 287 | 172 | 3 | 28 | 308 | 116 | 401 | 1.97e-64 | 208 |
| MsG0380013527.01.T01 | AT1G21150 | 36.101 | 277 | 172 | 3 | 27 | 298 | 66 | 342 | 2.96e-53 | 178 |
| MsG0380013527.01.T01 | AT1G21150 | 36.101 | 277 | 172 | 3 | 27 | 298 | 102 | 378 | 6.75e-53 | 178 |
| MsG0380013527.01.T01 | AT1G21150 | 36.101 | 277 | 172 | 3 | 27 | 298 | 166 | 442 | 3.33e-52 | 178 |
| MsG0380013527.01.T01 | AT5G64950 | 26.370 | 292 | 204 | 3 | 27 | 307 | 85 | 376 | 1.96e-28 | 113 |
| MsG0380013527.01.T01 | AT1G62010 | 26.688 | 311 | 190 | 4 | 27 | 301 | 84 | 392 | 3.32e-28 | 113 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61970 | 27.215 | 316 | 182 | 9 | 28 | 301 | 99 | 408 | 5.97e-28 | 112 |
| MsG0380013527.01.T01 | AT1G61990 | 25.890 | 309 | 184 | 5 | 27 | 297 | 98 | 399 | 1.57e-26 | 108 |
| MsG0380013527.01.T01 | AT1G61990 | 25.890 | 309 | 184 | 5 | 27 | 297 | 98 | 399 | 1.57e-26 | 108 |
| MsG0380013527.01.T01 | AT1G61980 | 27.010 | 311 | 189 | 6 | 27 | 300 | 98 | 407 | 4.35e-26 | 107 |
| MsG0380013527.01.T01 | AT1G61980 | 27.010 | 311 | 189 | 6 | 27 | 300 | 98 | 407 | 4.35e-26 | 107 |
| MsG0380013527.01.T01 | AT1G61980 | 27.010 | 311 | 189 | 6 | 27 | 300 | 98 | 407 | 4.35e-26 | 107 |
| MsG0380013527.01.T01 | AT1G62120 | 26.183 | 317 | 188 | 6 | 27 | 301 | 102 | 414 | 8.42e-26 | 106 |
| MsG0380013527.01.T01 | AT1G62110 | 30.252 | 238 | 151 | 6 | 27 | 254 | 98 | 330 | 5.32e-25 | 104 |
| MsG0380013527.01.T01 | AT1G62085 | 29.832 | 238 | 152 | 6 | 27 | 254 | 101 | 333 | 1.36e-24 | 103 |
| MsG0380013527.01.T01 | AT1G62085 | 29.832 | 238 | 152 | 6 | 27 | 254 | 101 | 333 | 1.36e-24 | 103 |
| MsG0380013527.01.T01 | AT3G46950 | 31.308 | 214 | 140 | 4 | 27 | 239 | 98 | 305 | 1.60e-24 | 103 |
| MsG0380013527.01.T01 | AT1G62150 | 28.163 | 245 | 161 | 6 | 27 | 266 | 104 | 338 | 2.24e-23 | 100 |
| MsG0380013527.01.T01 | AT1G61960 | 31.884 | 207 | 130 | 4 | 28 | 228 | 99 | 300 | 2.53e-19 | 88.6 |
| MsG0380013527.01.T01 | AT5G23930 | 25.575 | 348 | 170 | 7 | 27 | 297 | 101 | 436 | 2.01e-18 | 85.9 |
| MsG0380013527.01.T01 | AT1G56380 | 23.344 | 317 | 200 | 9 | 27 | 301 | 62 | 377 | 1.06e-14 | 74.3 |
| MsG0380013527.01.T01 | AT1G56380 | 23.344 | 317 | 200 | 9 | 27 | 301 | 73 | 388 | 1.15e-14 | 74.3 |
Find 65 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGACGCACTTCTGTTAT+TGG | 0.151097 | 3:-39953718 | MsG0380013527.01.T01:CDS |
| TAGATACGTAATTGGGAATT+AGG | 0.180153 | 3:+39954530 | None:intergenic |
| TCTTTACATAGATACGTAAT+TGG | 0.208101 | 3:+39954522 | None:intergenic |
| GTTGAGAGATTTATGTCTTT+TGG | 0.216068 | 3:-39954012 | MsG0380013527.01.T01:CDS |
| AGTGTTACTGATTAGTATTT+TGG | 0.239192 | 3:+39954406 | None:intergenic |
| TCAAGGTTCCATTTCCCTTT+TGG | 0.244439 | 3:-39954216 | MsG0380013527.01.T01:CDS |
| TATGAAAACAATGAACTTCT+TGG | 0.276128 | 3:-39953943 | MsG0380013527.01.T01:CDS |
| TCTCTGAGATCATCACATAC+TGG | 0.308471 | 3:+39953973 | None:intergenic |
| TGCGGGTACCCATCTGGCCT+GGG | 0.343629 | 3:-39954566 | MsG0380013527.01.T01:CDS |
| GACATCATAGCGAGGAATAA+TGG | 0.350264 | 3:+39954355 | None:intergenic |
| CTGTTATTGGATGCATATAA+AGG | 0.351180 | 3:-39953705 | MsG0380013527.01.T01:CDS |
| GTTAATTCAGTCAAAGAAAT+GGG | 0.353526 | 3:-39954140 | MsG0380013527.01.T01:CDS |
| TTGCGGGTACCCATCTGGCC+TGG | 0.362521 | 3:-39954567 | MsG0380013527.01.T01:CDS |
| CAAGCATTCTAGATTTGTTA+AGG | 0.370113 | 3:-39954165 | MsG0380013527.01.T01:CDS |
| AGGGTAAAACCCCTCTTTCA+TGG | 0.375484 | 3:+39954607 | None:intergenic |
| ATTGTATACCAAAAGGGAAA+TGG | 0.395580 | 3:+39954208 | None:intergenic |
| AGAAGACACTTATCCCTAGA+TGG | 0.395958 | 3:-39953854 | MsG0380013527.01.T01:CDS |
| GTTCAGAATCCCGGGCCATC+TGG | 0.397586 | 3:+39953887 | None:intergenic |
| TGTTAATTCAGTCAAAGAAA+TGG | 0.398595 | 3:-39954141 | MsG0380013527.01.T01:CDS |
| ATCTTAACAACTGCCCATCT+AGG | 0.399292 | 3:+39953840 | None:intergenic |
| AGATACGTAATTGGGAATTA+GGG | 0.411706 | 3:+39954531 | None:intergenic |
| CTTTGAAGCGTGGAACTAGC+TGG | 0.412874 | 3:-39954292 | MsG0380013527.01.T01:CDS |
| CTTTACATAGATACGTAATT+GGG | 0.430873 | 3:+39954523 | None:intergenic |
| CTCTGAGATCATCACATACT+GGG | 0.431338 | 3:+39953974 | None:intergenic |
| TGGGAAAATTGTATACCAAA+AGG | 0.432816 | 3:+39954201 | None:intergenic |
| GAAGACATTGCCAGATGGCC+CGG | 0.434278 | 3:-39953897 | MsG0380013527.01.T01:CDS |
| TGGGAATTAGGGATGGCAAT+TGG | 0.434708 | 3:+39954542 | None:intergenic |
| CAAGTTGCGGTTCAGAATCC+CGG | 0.446814 | 3:+39953878 | None:intergenic |
| CGGGATTCTGAACCGCAACT+TGG | 0.464726 | 3:-39953877 | MsG0380013527.01.T01:CDS |
| AAAATTGAGTTTAGGCAAAA+GGG | 0.475271 | 3:+39954463 | None:intergenic |
| CTTAACAAATCTAGAATGCT+TGG | 0.481915 | 3:+39954166 | None:intergenic |
| GGGAAAATTGTATACCAAAA+GGG | 0.484648 | 3:+39954202 | None:intergenic |
| GGGTAAAACCCCTCTTTCAT+GGG | 0.499037 | 3:+39954608 | None:intergenic |
| AGGAATCTTGGTGTGCCTCA+AGG | 0.500306 | 3:-39954233 | MsG0380013527.01.T01:CDS |
| TCTTAACAACTGCCCATCTA+GGG | 0.515531 | 3:+39953841 | None:intergenic |
| GCAATTGGACCCAGGCCAGA+TGG | 0.516779 | 3:+39954557 | None:intergenic |
| CTAGCATGAACAAAGAGACT+TGG | 0.517246 | 3:-39954070 | MsG0380013527.01.T01:CDS |
| TGATGCAGTTCAGAATATTG+AGG | 0.524450 | 3:-39954261 | MsG0380013527.01.T01:CDS |
| TTTGAAGCGTGGAACTAGCT+GGG | 0.535128 | 3:-39954291 | MsG0380013527.01.T01:CDS |
| TGCCAAAATAAAATAAGACT+TGG | 0.548121 | 3:+39954106 | None:intergenic |
| AAGTTGCGGTTCAGAATCCC+GGG | 0.557152 | 3:+39953879 | None:intergenic |
| AAGACATTGCCAGATGGCCC+GGG | 0.562060 | 3:-39953896 | MsG0380013527.01.T01:CDS |
| CGTGTCCAAACCCATGAAAG+AGG | 0.563113 | 3:-39954618 | None:intergenic |
| CAATTGGACCCAGGCCAGAT+GGG | 0.572120 | 3:+39954558 | None:intergenic |
| GAAGACACTTATCCCTAGAT+GGG | 0.579858 | 3:-39953853 | MsG0380013527.01.T01:CDS |
| GTGTCCAAACCCATGAAAGA+GGG | 0.580360 | 3:-39954617 | None:intergenic |
| AAAATAAAATAAGACTTGGA+AGG | 0.583696 | 3:+39954110 | None:intergenic |
| TGCTTGGCGAATGCTACAGT+GGG | 0.584692 | 3:+39954182 | None:intergenic |
| AACTTCTTGGTGAATGATGT+GGG | 0.587875 | 3:-39953930 | MsG0380013527.01.T01:CDS |
| TAGCATGAACAAAGAGACTT+GGG | 0.602698 | 3:-39954069 | MsG0380013527.01.T01:CDS |
| GAACTTCTTGGTGAATGATG+TGG | 0.604661 | 3:-39953931 | MsG0380013527.01.T01:CDS |
| TTAATTCAGTCAAAGAAATG+GGG | 0.606609 | 3:-39954139 | MsG0380013527.01.T01:CDS |
| TATAGTTCGCAATGACAAAG+AGG | 0.608309 | 3:-39954324 | MsG0380013527.01.T01:CDS |
| ACGTAATTGGGAATTAGGGA+TGG | 0.617753 | 3:+39954535 | None:intergenic |
| ATCAGTGGTTGAAATCCCAA+TGG | 0.623807 | 3:+39954433 | None:intergenic |
| TAGGGATGGCAATTGGACCC+AGG | 0.627415 | 3:+39954549 | None:intergenic |
| TGCAAGAAGACATTGCCAGA+TGG | 0.629843 | 3:-39953902 | MsG0380013527.01.T01:CDS |
| GTAGTTTCAACTTTGAAGCG+TGG | 0.635683 | 3:-39954302 | MsG0380013527.01.T01:CDS |
| ATGCTTGGCGAATGCTACAG+TGG | 0.637179 | 3:+39954181 | None:intergenic |
| TTTCTCACTAATCGAAATAG+CGG | 0.657745 | 3:+39953773 | None:intergenic |
| TAAGTGTCTTCTCCAAGTTG+CGG | 0.658300 | 3:+39953865 | None:intergenic |
| TGTCCAAACCCATGAAAGAG+GGG | 0.692479 | 3:-39954616 | None:intergenic |
| CTTCTAATGACATCATAGCG+AGG | 0.701323 | 3:+39954347 | None:intergenic |
| TCTGAGATCATCACATACTG+GGG | 0.718514 | 3:+39953975 | None:intergenic |
| AAAAGGGAAATGGAACCTTG+AGG | 0.747491 | 3:+39954218 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAAGACTTGGA+AGG | + | Chr3:39954187-39954206 | None:intergenic | 20.0% |
| !!! | GTTAAGATTTTGAATTCAAA+AGG | - | Chr3:39954469-39954488 | MsG0380013527.01.T01:CDS | 20.0% |
| !!! | GTTTTGAAAAAAGTACAAAA+GGG | + | Chr3:39953802-39953821 | None:intergenic | 20.0% |
| !!! | TAATCAGTAACACTAATTTT+TGG | - | Chr3:39953897-39953916 | MsG0380013527.01.T01:CDS | 20.0% |
| !!! | TTCCAAGTCTTATTTTATTT+TGG | - | Chr3:39954186-39954205 | MsG0380013527.01.T01:CDS | 20.0% |
| ! | AAAAATTGAGTTTAGGCAAA+AGG | + | Chr3:39953835-39953854 | None:intergenic | 25.0% |
| ! | AAAATTGAGTTTAGGCAAAA+GGG | + | Chr3:39953834-39953853 | None:intergenic | 25.0% |
| ! | CTTTACATAGATACGTAATT+GGG | + | Chr3:39953774-39953793 | None:intergenic | 25.0% |
| ! | GATTGCAAAAAATTGAGTTT+AGG | + | Chr3:39953842-39953861 | None:intergenic | 25.0% |
| ! | GTTAATTCAGTCAAAGAAAT+GGG | - | Chr3:39954154-39954173 | MsG0380013527.01.T01:CDS | 25.0% |
| ! | TATGAAAACAATGAACTTCT+TGG | - | Chr3:39954351-39954370 | MsG0380013527.01.T01:CDS | 25.0% |
| ! | TCTTTACATAGATACGTAAT+TGG | + | Chr3:39953775-39953794 | None:intergenic | 25.0% |
| ! | TGCCAAAATAAAATAAGACT+TGG | + | Chr3:39954191-39954210 | None:intergenic | 25.0% |
| ! | TGTTAATTCAGTCAAAGAAA+TGG | - | Chr3:39954153-39954172 | MsG0380013527.01.T01:CDS | 25.0% |
| ! | TTAATTCAGTCAAAGAAATG+GGG | - | Chr3:39954155-39954174 | MsG0380013527.01.T01:CDS | 25.0% |
| !! | ATCAAGATTCAAGATTTTTC+AGG | - | Chr3:39954249-39954268 | MsG0380013527.01.T01:CDS | 25.0% |
| !! | TCAAGATTCAAGATTTTTCA+GGG | - | Chr3:39954250-39954269 | MsG0380013527.01.T01:CDS | 25.0% |
| !!! | AGTGTTACTGATTAGTATTT+TGG | + | Chr3:39953891-39953910 | None:intergenic | 25.0% |
| !!! | GGTTTTGAAAAAAGTACAAA+AGG | + | Chr3:39953803-39953822 | None:intergenic | 25.0% |
| !!! | GTGTTACTGATTAGTATTTT+GGG | + | Chr3:39953890-39953909 | None:intergenic | 25.0% |
| !!! | TAATTTTTGGAGATTAAGCT+TGG | - | Chr3:39953910-39953929 | MsG0380013527.01.T01:CDS | 25.0% |
| !!! | TCAATTTTTTGCAATCCATT+GGG | - | Chr3:39953846-39953865 | MsG0380013527.01.T01:CDS | 25.0% |
| !!! | TGTTACTGATTAGTATTTTG+GGG | + | Chr3:39953889-39953908 | None:intergenic | 25.0% |
| AAAAAATACCCACAATGGTA+GGG | + | Chr3:39953709-39953728 | None:intergenic | 30.0% | |
| AGATACGTAATTGGGAATTA+GGG | + | Chr3:39953766-39953785 | None:intergenic | 30.0% | |
| ATTGTATACCAAAAGGGAAA+TGG | + | Chr3:39954089-39954108 | None:intergenic | 30.0% | |
| CTGTTATTGGATGCATATAA+AGG | - | Chr3:39954589-39954608 | MsG0380013527.01.T01:CDS | 30.0% | |
| GGGAAAATTGTATACCAAAA+GGG | + | Chr3:39954095-39954114 | None:intergenic | 30.0% | |
| TAGATACGTAATTGGGAATT+AGG | + | Chr3:39953767-39953786 | None:intergenic | 30.0% | |
| TGGGAAAATTGTATACCAAA+AGG | + | Chr3:39954096-39954115 | None:intergenic | 30.0% | |
| TTTCTCACTAATCGAAATAG+CGG | + | Chr3:39954524-39954543 | None:intergenic | 30.0% | |
| ! | CTTAACAAATCTAGAATGCT+TGG | + | Chr3:39954131-39954150 | None:intergenic | 30.0% |
| ! | GATTAGTGAGAAAACGTTTT+TGG | - | Chr3:39954531-39954550 | MsG0380013527.01.T01:CDS | 30.0% |
| ! | GTTGAGAGATTTATGTCTTT+TGG | - | Chr3:39954282-39954301 | MsG0380013527.01.T01:CDS | 30.0% |
| ! | TTCAGAATATTGAGGTTTTG+AGG | - | Chr3:39954041-39954060 | MsG0380013527.01.T01:CDS | 30.0% |
| !! | CAAGATTCAAGATTTTTCAG+GGG | - | Chr3:39954251-39954270 | MsG0380013527.01.T01:CDS | 30.0% |
| !! | CAAGCATTCTAGATTTGTTA+AGG | - | Chr3:39954129-39954148 | MsG0380013527.01.T01:CDS | 30.0% |
| !!! | CTCAATTTTTTGCAATCCAT+TGG | - | Chr3:39953845-39953864 | MsG0380013527.01.T01:CDS | 30.0% |
| AACTTCTTGGTGAATGATGT+GGG | - | Chr3:39954364-39954383 | MsG0380013527.01.T01:CDS | 35.0% | |
| CAAAAAATACCCACAATGGT+AGG | + | Chr3:39953710-39953729 | None:intergenic | 35.0% | |
| TAGCATGAACAAAGAGACTT+GGG | - | Chr3:39954225-39954244 | MsG0380013527.01.T01:CDS | 35.0% | |
| TATAGTTCGCAATGACAAAG+AGG | - | Chr3:39953970-39953989 | MsG0380013527.01.T01:CDS | 35.0% | |
| TGATGCAGTTCAGAATATTG+AGG | - | Chr3:39954033-39954052 | MsG0380013527.01.T01:CDS | 35.0% | |
| !!! | ACCATTGTGGGTATTTTTTG+CGG | - | Chr3:39953710-39953729 | MsG0380013527.01.T01:CDS | 35.0% |
| !!! | ATTCAAGATTTTTCAGGGGT+GGG | - | Chr3:39954255-39954274 | MsG0380013527.01.T01:CDS | 35.0% |
| !!! | ATTGAGGTTTTGAGGAATCT+TGG | - | Chr3:39954049-39954068 | MsG0380013527.01.T01:CDS | 35.0% |
| AAAAGGGAAATGGAACCTTG+AGG | + | Chr3:39954079-39954098 | None:intergenic | 40.0% | |
| ACGTAATTGGGAATTAGGGA+TGG | + | Chr3:39953762-39953781 | None:intergenic | 40.0% | |
| AGAAGACACTTATCCCTAGA+TGG | - | Chr3:39954440-39954459 | MsG0380013527.01.T01:CDS | 40.0% | |
| AGAAGACGCACTTCTGTTAT+TGG | - | Chr3:39954576-39954595 | MsG0380013527.01.T01:CDS | 40.0% | |
| ATCAGTGGTTGAAATCCCAA+TGG | + | Chr3:39953864-39953883 | None:intergenic | 40.0% | |
| ATCTTAACAACTGCCCATCT+AGG | + | Chr3:39954457-39954476 | None:intergenic | 40.0% | |
| CTAGCATGAACAAAGAGACT+TGG | - | Chr3:39954224-39954243 | MsG0380013527.01.T01:CDS | 40.0% | |
| CTTCTAATGACATCATAGCG+AGG | + | Chr3:39953950-39953969 | None:intergenic | 40.0% | |
| GAACTTCTTGGTGAATGATG+TGG | - | Chr3:39954363-39954382 | MsG0380013527.01.T01:CDS | 40.0% | |
| GAAGACACTTATCCCTAGAT+GGG | - | Chr3:39954441-39954460 | MsG0380013527.01.T01:CDS | 40.0% | |
| GACATCATAGCGAGGAATAA+TGG | + | Chr3:39953942-39953961 | None:intergenic | 40.0% | |
| TAAGTGTCTTCTCCAAGTTG+CGG | + | Chr3:39954432-39954451 | None:intergenic | 40.0% | |
| TCTTAACAACTGCCCATCTA+GGG | + | Chr3:39954456-39954475 | None:intergenic | 40.0% | |
| ! | TCAAGGTTCCATTTCCCTTT+TGG | - | Chr3:39954078-39954097 | MsG0380013527.01.T01:CDS | 40.0% |
| ! | TCACATACTGGGGACATTTT+TGG | + | Chr3:39954312-39954331 | None:intergenic | 40.0% |
| ! | TCTGAGATCATCACATACTG+GGG | + | Chr3:39954322-39954341 | None:intergenic | 40.0% |
| ! | TTAGGCAAAAGGGTCTTTTC+AGG | + | Chr3:39953824-39953843 | None:intergenic | 40.0% |
| !! | CTCTGAGATCATCACATACT+GGG | + | Chr3:39954323-39954342 | None:intergenic | 40.0% |
| !! | GTAGTTTCAACTTTGAAGCG+TGG | - | Chr3:39953992-39954011 | MsG0380013527.01.T01:CDS | 40.0% |
| !! | TAGTATTTTGGGGAGATCAG+TGG | + | Chr3:39953879-39953898 | None:intergenic | 40.0% |
| !! | TCTCTGAGATCATCACATAC+TGG | + | Chr3:39954324-39954343 | None:intergenic | 40.0% |
| !!! | CCATTGTGGGTATTTTTTGC+GGG | - | Chr3:39953711-39953730 | MsG0380013527.01.T01:CDS | 40.0% |
| !!! | GATTCAAGATTTTTCAGGGG+TGG | - | Chr3:39954254-39954273 | MsG0380013527.01.T01:CDS | 40.0% |
| !!! | TTCAAGATTTTTCAGGGGTG+GGG | - | Chr3:39954256-39954275 | MsG0380013527.01.T01:CDS | 40.0% |
| CCCGCAAAAAATACCCACAA+TGG | + | Chr3:39953714-39953733 | None:intergenic | 45.0% | |
| TGCAAGAAGACATTGCCAGA+TGG | - | Chr3:39954392-39954411 | MsG0380013527.01.T01:CDS | 45.0% | |
| TGGGAATTAGGGATGGCAAT+TGG | + | Chr3:39953755-39953774 | None:intergenic | 45.0% | |
| ! | GGGTTTTACCCTACCATTGT+GGG | - | Chr3:39953698-39953717 | MsG0380013527.01.T01:CDS | 45.0% |
| ! | TTTGAAGCGTGGAACTAGCT+GGG | - | Chr3:39954003-39954022 | MsG0380013527.01.T01:CDS | 45.0% |
| !!! | ATTTTTTGCGGGTACCCATC+TGG | - | Chr3:39953722-39953741 | MsG0380013527.01.T01:CDS | 45.0% |
| AAGTTGCGGTTCAGAATCCC+GGG | + | Chr3:39954418-39954437 | None:intergenic | 50.0% | |
| ATGCTTGGCGAATGCTACAG+TGG | + | Chr3:39954116-39954135 | None:intergenic | 50.0% | |
| CAAGTTGCGGTTCAGAATCC+CGG | + | Chr3:39954419-39954438 | None:intergenic | 50.0% | |
| TGCTTGGCGAATGCTACAGT+GGG | + | Chr3:39954115-39954134 | None:intergenic | 50.0% | |
| ! | AGGAATCTTGGTGTGCCTCA+AGG | - | Chr3:39954061-39954080 | MsG0380013527.01.T01:CDS | 50.0% |
| ! | GGGGTTTTACCCTACCATTG+TGG | - | Chr3:39953697-39953716 | MsG0380013527.01.T01:CDS | 50.0% |
| !! | CTTTGAAGCGTGGAACTAGC+TGG | - | Chr3:39954002-39954021 | MsG0380013527.01.T01:CDS | 50.0% |
| !!! | AGATTTTTCAGGGGTGGGGA+TGG | - | Chr3:39954260-39954279 | MsG0380013527.01.T01:CDS | 50.0% |
| AAGACATTGCCAGATGGCCC+GGG | - | Chr3:39954398-39954417 | MsG0380013527.01.T01:CDS | 55.0% | |
| CAATTGGACCCAGGCCAGAT+GGG | + | Chr3:39953739-39953758 | None:intergenic | 55.0% | |
| CGGGATTCTGAACCGCAACT+TGG | - | Chr3:39954417-39954436 | MsG0380013527.01.T01:CDS | 55.0% | |
| GAAGACATTGCCAGATGGCC+CGG | - | Chr3:39954397-39954416 | MsG0380013527.01.T01:CDS | 55.0% | |
| TAGGGATGGCAATTGGACCC+AGG | + | Chr3:39953748-39953767 | None:intergenic | 55.0% | |
| GCAATTGGACCCAGGCCAGA+TGG | + | Chr3:39953740-39953759 | None:intergenic | 60.0% | |
| GTTCAGAATCCCGGGCCATC+TGG | + | Chr3:39954410-39954429 | None:intergenic | 60.0% | |
| TGCGGGTACCCATCTGGCCT+GGG | - | Chr3:39953728-39953747 | MsG0380013527.01.T01:CDS | 65.0% | |
| TTGCGGGTACCCATCTGGCC+TGG | - | Chr3:39953727-39953746 | MsG0380013527.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 39953689 | 39954627 | 39953689 | ID=MsG0380013527.01;Name=MsG0380013527.01 |
| Chr3 | mRNA | 39953689 | 39954627 | 39953689 | ID=MsG0380013527.01.T01;Parent=MsG0380013527.01;Name=MsG0380013527.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|312 |
| Chr3 | exon | 39953689 | 39954627 | 39953689 | ID=MsG0380013527.01.T01:exon:22373;Parent=MsG0380013527.01.T01 |
| Chr3 | CDS | 39953689 | 39954627 | 39953689 | ID=MsG0380013527.01.T01:cds;Parent=MsG0380013527.01.T01 |
| Gene Sequence |
| Protein sequence |
