AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014069.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014069.01.T01 MTR_3g115490 58.667 75 31 0 42 116 96 170 9.89e-26 100
MsG0380014069.01.T01 MTR_8g073560 50.667 75 37 0 42 116 106 180 4.73e-23 91.7
MsG0380014069.01.T01 MTR_8g073560 50.667 75 37 0 42 116 92 166 1.27e-22 91.7
MsG0380014069.01.T01 MTR_5g023980 37.931 116 67 2 2 116 68 179 1.39e-21 87.4
MsG0380014069.01.T01 MTR_5g023980 37.931 116 67 2 2 116 54 165 4.14e-21 87.4
MsG0380014069.01.T01 MTR_5g038870 48.000 75 39 0 42 116 90 164 1.27e-19 83.6
MsG0380014069.01.T01 MTR_4g115120 48.000 75 39 0 42 116 125 199 5.87e-19 81.6
MsG0380014069.01.T01 MTR_5g099130 50.667 75 32 1 42 116 108 177 1.04e-18 80.9
MsG0380014069.01.T01 MTR_5g099130 50.667 75 32 1 42 116 119 188 1.34e-18 80.5
MsG0380014069.01.T01 MTR_5g099130 50.667 75 32 1 42 116 115 184 1.36e-18 80.5
MsG0380014069.01.T01 MTR_4g108270 38.596 114 65 2 2 114 62 171 5.47e-18 79.0
MsG0380014069.01.T01 MTR_2g096950 43.836 73 41 0 42 114 88 160 8.49e-18 78.6
MsG0380014069.01.T01 MTR_3g067795 42.667 75 43 0 42 116 10 84 1.20e-17 77.4
MsG0380014069.01.T01 MTR_3g067795 42.667 75 43 0 42 116 10 84 1.26e-17 77.4
MsG0380014069.01.T01 MTR_5g088400 45.333 75 41 0 42 116 84 158 1.27e-17 77.0
MsG0380014069.01.T01 MTR_5g088400 45.333 75 41 0 42 116 84 158 1.31e-17 77.8
MsG0380014069.01.T01 MTR_7g061660 45.333 75 41 0 42 116 87 161 1.36e-17 77.8
MsG0380014069.01.T01 MTR_3g067770 42.667 75 43 0 42 116 83 157 1.44e-17 76.6
MsG0380014069.01.T01 MTR_3g067770 42.667 75 43 0 42 116 10 84 1.83e-17 76.3
MsG0380014069.01.T01 MTR_3g067795 42.667 75 43 0 42 116 90 164 2.06e-17 77.4
MsG0380014069.01.T01 MTR_3g067795 42.667 75 43 0 42 116 90 164 2.22e-17 77.0
MsG0380014069.01.T01 MTR_5g079840 42.105 76 44 0 41 116 88 163 2.64e-17 77.0
MsG0380014069.01.T01 MTR_3g067770 42.667 75 43 0 42 116 83 157 2.95e-17 76.6
MsG0380014069.01.T01 MTR_2g096970 38.158 76 47 0 41 116 74 149 3.66e-16 73.6
MsG0380014069.01.T01 MTR_2g096960 38.356 73 45 0 42 114 85 157 4.39e-16 73.6
MsG0380014069.01.T01 MTR_3g462840 45.333 75 41 0 42 116 78 152 8.98e-16 72.8
MsG0380014069.01.T01 MTR_3g040800 40.000 75 45 0 42 116 122 196 2.68e-15 71.2
MsG0380014069.01.T01 MTR_4g123490 55.556 54 24 0 63 116 13 66 2.86e-15 66.2
MsG0380014069.01.T01 MTR_7g074610 47.945 73 35 1 42 114 105 174 9.63e-15 69.7
MsG0380014069.01.T01 MTR_4g126970 41.333 75 42 1 42 116 137 209 1.16e-14 69.7
MsG0380014069.01.T01 MTR_5g038450 45.205 73 40 0 42 114 150 222 1.60e-14 69.3
MsG0380014069.01.T01 MTR_6g011570 42.667 75 43 0 42 116 81 155 2.14e-14 68.9
MsG0380014069.01.T01 MTR_6g011330 42.466 73 42 0 42 114 147 219 2.44e-14 68.6
MsG0380014069.01.T01 MTR_4g063940 41.096 73 43 0 42 114 109 181 4.47e-14 67.8
MsG0380014069.01.T01 MTR_8g469230 43.836 73 41 0 42 114 146 218 5.78e-14 67.8
MsG0380014069.01.T01 MTR_7g009320 41.096 73 43 0 42 114 137 209 1.50e-13 66.6
MsG0380014069.01.T01 MTR_4g063945 39.744 78 47 0 37 114 99 176 2.35e-13 65.9
MsG0380014069.01.T01 MTR_4g063945 39.744 78 47 0 37 114 101 178 2.35e-13 65.9
MsG0380014069.01.T01 MTR_4g063930 39.726 73 44 0 42 114 188 260 2.50e-13 65.9
MsG0380014069.01.T01 MTR_4g063935 42.466 73 42 0 42 114 127 199 2.75e-13 65.9
MsG0380014069.01.T01 MTR_4g063935 42.466 73 42 0 42 114 107 179 2.75e-13 65.5
MsG0380014069.01.T01 MTR_5g026370 45.205 73 37 1 42 114 106 175 2.79e-13 65.5
MsG0380014069.01.T01 MTR_8g100155 44.737 76 39 1 42 117 85 157 2.86e-13 65.5
MsG0380014069.01.T01 MTR_3g067775 37.333 75 47 0 42 116 75 149 7.88e-13 63.9
MsG0380014069.01.T01 MTR_3g105320 41.333 75 41 1 42 116 96 167 1.15e-12 63.9
MsG0380014069.01.T01 MTR_3g067765 39.726 73 44 0 44 116 43 115 1.17e-12 63.5
MsG0380014069.01.T01 MTR_5g013610 44.737 76 35 2 42 114 78 149 1.21e-12 63.5
MsG0380014069.01.T01 MTR_2g096160 42.424 66 37 1 63 128 528 592 1.53e-12 63.5
MsG0380014069.01.T01 MTR_7g101800 52.542 59 24 1 60 114 134 192 2.10e-12 63.2
MsG0380014069.01.T01 MTR_7g101800 52.542 59 24 1 60 114 122 180 2.25e-12 63.2
MsG0380014069.01.T01 MTR_4g099130 44.872 78 35 2 41 114 82 155 2.37e-12 62.8
MsG0380014069.01.T01 MTR_7g101800 52.542 59 24 1 60 114 114 172 2.42e-12 63.2
MsG0380014069.01.T01 MTR_5g047120 38.596 114 50 6 2 114 496 590 2.70e-12 62.8
MsG0380014069.01.T01 MTR_8g041880 53.968 63 28 1 52 114 357 418 4.45e-12 62.4
MsG0380014069.01.T01 MTR_1g015020 42.667 75 40 1 42 116 96 167 4.87e-12 62.0
MsG0380014069.01.T01 MTR_7g115300 39.726 73 34 1 42 114 541 603 4.91e-12 62.4
MsG0380014069.01.T01 MTR_1g063910 41.111 90 39 3 35 114 99 184 5.18e-12 62.0
MsG0380014069.01.T01 MTR_1g063910 41.111 90 39 3 35 114 90 175 5.30e-12 62.0
MsG0380014069.01.T01 MTR_8g067720 35.714 98 51 2 17 114 332 417 5.88e-12 62.0
MsG0380014069.01.T01 MTR_8g068050 46.575 73 31 1 42 114 259 323 6.12e-12 62.0
MsG0380014069.01.T01 MTR_8g068050 46.575 73 31 1 42 114 369 433 6.33e-12 62.0
MsG0380014069.01.T01 MTR_5g047070 38.596 114 50 6 2 114 255 349 6.48e-12 62.0
MsG0380014069.01.T01 MTR_2g030310 41.270 63 36 1 52 114 536 597 8.18e-12 61.6
MsG0380014069.01.T01 MTR_2g030310 41.270 63 36 1 52 114 536 597 9.39e-12 61.2
MsG0380014069.01.T01 MTR_8g020920 45.333 75 38 2 42 116 93 164 1.30e-11 60.8
MsG0380014069.01.T01 MTR_1g080740 39.726 73 34 1 42 114 536 598 1.30e-11 60.8
MsG0380014069.01.T01 MTR_2g080220 44.828 58 32 0 57 114 521 578 1.67e-11 60.8
MsG0380014069.01.T01 MTR_8g037700 38.356 73 42 1 57 129 550 619 1.71e-11 60.8
MsG0380014069.01.T01 MTR_4g131900 34.746 118 60 3 5 114 70 178 2.06e-11 60.5
MsG0380014069.01.T01 MTR_7g015670 37.333 75 37 1 42 116 550 614 2.70e-11 60.1
MsG0380014069.01.T01 MTR_4g133920 36.111 108 59 3 18 116 5 111 2.86e-11 59.7
MsG0380014069.01.T01 MTR_6g015805 37.805 82 38 2 37 114 540 612 2.97e-11 60.1
MsG0380014069.01.T01 MTR_7g062950 46.032 63 34 0 52 114 356 418 3.02e-11 60.1
MsG0380014069.01.T01 MTR_0015s0090 42.466 73 33 1 42 114 344 407 3.11e-11 60.1
MsG0380014069.01.T01 MTR_8g008820 44.156 77 35 2 42 114 90 162 4.03e-11 59.3
MsG0380014069.01.T01 MTR_4g061833 39.683 63 37 1 52 114 364 425 4.22e-11 59.7
MsG0380014069.01.T01 MTR_7g062660 44.444 63 35 0 52 114 349 411 4.27e-11 59.3
MsG0380014069.01.T01 MTR_4g061833 39.683 63 37 1 52 114 515 576 4.31e-11 59.7
MsG0380014069.01.T01 MTR_4g061930 39.683 63 37 1 52 114 515 576 4.31e-11 59.7
MsG0380014069.01.T01 MTR_1g100110 39.326 89 43 3 28 116 501 578 5.79e-11 59.3
MsG0380014069.01.T01 MTR_8g059615 45.455 55 30 0 63 117 664 718 6.43e-11 58.9
MsG0380014069.01.T01 MTR_7g062750 44.444 63 35 0 52 114 358 420 6.67e-11 58.9
MsG0380014069.01.T01 MTR_8g057660 44.643 56 31 0 59 114 77 132 7.71e-11 58.5
MsG0380014069.01.T01 MTR_8g467150 41.026 78 42 2 52 129 464 537 8.22e-11 58.5
MsG0380014069.01.T01 MTR_8g059605 45.455 55 30 0 63 117 681 735 8.60e-11 58.5
MsG0380014069.01.T01 MTR_1g040077 39.744 78 43 2 52 129 448 521 8.69e-11 58.5
MsG0380014069.01.T01 MTR_8g059615 45.455 55 30 0 63 117 664 718 8.76e-11 58.5
MsG0380014069.01.T01 MTR_1g040073 39.744 78 43 2 52 129 448 521 8.96e-11 58.5
MsG0380014069.01.T01 MTR_8g041710 47.619 63 32 1 52 114 349 410 9.07e-11 58.5
MsG0380014069.01.T01 MTR_1g052275 44.444 63 35 0 52 114 358 420 9.69e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014069.01.T01 AT4G35600 53.333 75 35 0 42 116 100 174 2.74e-22 90.9
MsG0380014069.01.T01 AT4G35600 53.333 75 35 0 42 116 101 175 2.75e-22 90.9
MsG0380014069.01.T01 AT1G76360 52.000 75 36 0 42 116 177 251 5.65e-22 90.5
MsG0380014069.01.T01 AT2G17220 52.000 75 34 2 42 116 100 172 1.30e-19 83.6
MsG0380014069.01.T01 AT2G17220 52.000 75 34 2 42 116 101 173 1.30e-19 83.6
MsG0380014069.01.T01 AT3G55450 41.333 75 44 0 42 116 112 186 1.60e-18 80.5
MsG0380014069.01.T01 AT3G55450 41.333 75 44 0 42 116 75 149 1.69e-18 80.5
MsG0380014069.01.T01 AT5G02290 44.000 75 42 0 42 116 82 156 3.36e-18 79.3
MsG0380014069.01.T01 AT5G02290 44.000 75 42 0 42 116 82 156 3.36e-18 79.3
MsG0380014069.01.T01 AT1G14370 46.667 75 40 0 42 116 100 174 4.41e-18 79.3
MsG0380014069.01.T01 AT2G28930 43.836 73 41 0 42 114 83 155 5.15e-18 79.0
MsG0380014069.01.T01 AT2G28930 43.836 73 41 0 42 114 86 158 5.20e-18 79.0
MsG0380014069.01.T01 AT2G28930 43.836 73 41 0 42 114 94 166 6.42e-18 79.0
MsG0380014069.01.T01 AT2G02800 45.333 75 41 0 42 116 97 171 2.66e-17 77.0
MsG0380014069.01.T01 AT2G02800 45.333 75 41 0 42 116 97 171 2.66e-17 77.0
MsG0380014069.01.T01 AT2G39660 40.000 75 45 0 42 116 81 155 6.47e-17 75.9
MsG0380014069.01.T01 AT5G15080 46.575 73 39 0 42 114 156 228 7.10e-17 75.9
MsG0380014069.01.T01 AT3G01300 43.836 73 41 0 42 114 150 222 2.36e-16 74.7
MsG0380014069.01.T01 AT3G28690 42.667 75 43 0 42 116 40 114 2.77e-16 73.9
MsG0380014069.01.T01 AT1G07570 42.466 73 42 0 42 114 93 165 3.21e-16 73.9
MsG0380014069.01.T01 AT1G07570 42.466 73 42 0 42 114 82 154 3.53e-16 73.9
MsG0380014069.01.T01 AT1G07570 42.466 73 42 0 42 114 82 154 3.53e-16 73.9
MsG0380014069.01.T01 AT1G07570 42.466 73 42 0 42 114 82 154 3.53e-16 73.9
MsG0380014069.01.T01 AT3G28690 43.836 73 41 0 42 114 89 161 6.05e-16 73.2
MsG0380014069.01.T01 AT3G28690 43.836 73 41 0 42 114 140 212 6.42e-16 73.2
MsG0380014069.01.T01 AT1G69790 45.333 75 41 0 42 116 87 161 1.03e-15 72.4
MsG0380014069.01.T01 AT1G69790 45.333 75 41 0 42 116 98 172 1.17e-15 72.4
MsG0380014069.01.T01 AT5G01020 47.945 73 35 1 42 114 83 152 9.36e-15 69.7
MsG0380014069.01.T01 AT4G17660 47.297 74 38 1 41 114 104 176 1.19e-14 69.7
MsG0380014069.01.T01 AT2G07180 47.368 76 31 2 42 114 104 173 1.28e-14 69.7
MsG0380014069.01.T01 AT2G07180 47.368 76 31 2 42 114 104 173 1.28e-14 69.7
MsG0380014069.01.T01 AT1G26970 44.737 76 41 1 42 116 97 172 3.27e-14 68.2
MsG0380014069.01.T01 AT5G11410 44.595 74 39 1 43 116 67 138 5.83e-14 67.4
MsG0380014069.01.T01 AT5G59700 37.755 98 46 3 18 114 475 558 8.55e-14 67.4
MsG0380014069.01.T01 AT3G46290 38.710 93 42 3 23 114 483 561 9.23e-14 67.4
MsG0380014069.01.T01 AT2G39360 46.154 65 34 1 52 116 502 565 9.58e-14 67.0
MsG0380014069.01.T01 AT5G24010 50.769 65 31 1 52 116 504 567 4.56e-13 65.1
MsG0380014069.01.T01 AT3G09830 48.052 77 32 3 42 114 98 170 7.40e-13 64.3
MsG0380014069.01.T01 AT3G09830 48.052 77 32 3 42 114 98 170 7.40e-13 64.3
MsG0380014069.01.T01 AT3G09830 48.052 77 32 3 42 114 98 170 7.40e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 8.32e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 8.85e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 8.85e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 9.44e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 9.44e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 9.52e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 9.52e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 454 544 9.63e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 523 613 9.93e-13 64.3
MsG0380014069.01.T01 AT4G11900 39.286 112 46 4 4 114 454 544 1.21e-12 63.9
MsG0380014069.01.T01 AT1G72540 46.667 75 37 3 42 116 98 169 2.26e-12 63.2
MsG0380014069.01.T01 AT2G28940 41.935 93 45 3 42 130 116 203 2.51e-12 63.2
MsG0380014069.01.T01 AT2G39110 50.000 60 26 1 60 115 103 162 2.69e-12 62.8
MsG0380014069.01.T01 AT2G39110 50.000 60 26 1 60 115 118 177 2.70e-12 62.8
MsG0380014069.01.T01 AT5G47070 40.000 95 47 3 42 132 100 188 3.41e-12 62.8
MsG0380014069.01.T01 AT5G56460 45.455 77 40 2 41 116 89 164 4.05e-12 62.4
MsG0380014069.01.T01 AT1G61590 42.466 73 39 1 42 114 113 182 4.10e-12 62.4
MsG0380014069.01.T01 AT5G03320 52.542 59 24 1 60 114 109 167 8.38e-12 61.6
MsG0380014069.01.T01 AT5G03320 52.542 59 24 1 60 114 109 167 8.38e-12 61.6
MsG0380014069.01.T01 AT5G54380 44.444 63 34 1 52 114 525 586 1.21e-11 61.2
MsG0380014069.01.T01 AT2G21480 44.828 58 32 0 57 114 544 601 1.66e-11 60.8
MsG0380014069.01.T01 AT2G04300 44.000 75 39 1 57 131 601 672 2.07e-11 60.5
MsG0380014069.01.T01 AT3G59700 41.270 63 37 0 52 114 353 415 2.09e-11 60.5
MsG0380014069.01.T01 AT4G39110 44.828 58 32 0 57 114 545 602 2.19e-11 60.5
MsG0380014069.01.T01 AT4G29990 37.500 88 41 2 42 129 588 661 2.30e-11 60.5
MsG0380014069.01.T01 AT1G49100 44.000 75 39 1 57 131 600 671 2.42e-11 60.5
MsG0380014069.01.T01 AT2G04300 44.000 75 39 1 57 131 560 631 2.58e-11 60.1
MsG0380014069.01.T01 AT5G25440 32.203 118 75 2 1 113 1 118 2.67e-11 59.7
MsG0380014069.01.T01 AT4G29990 37.500 88 41 2 42 129 588 661 2.74e-11 60.1
MsG0380014069.01.T01 AT5G06740 53.846 52 24 0 63 114 354 405 3.25e-11 60.1
MsG0380014069.01.T01 AT5G06740 53.846 52 24 0 63 114 366 417 3.26e-11 60.1
MsG0380014069.01.T01 AT3G59730 41.270 63 37 0 52 114 350 412 3.37e-11 59.7
MsG0380014069.01.T01 AT4G02410 50.000 52 26 0 63 114 381 432 6.48e-11 58.9
MsG0380014069.01.T01 AT3G59740 46.154 52 28 0 63 114 359 410 7.84e-11 58.9
MsG0380014069.01.T01 AT3G02810 44.444 63 35 0 52 114 79 141 8.94e-11 58.5

Find 31 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAAGTCATGTCGGCTTT+TGG 0.228042 3:-48903210 None:intergenic
CCAAGTAGTTTAAGCAGATT+TGG 0.250047 3:-48903368 None:intergenic
ATGACAATTTCAAAGGATCT+AGG 0.309696 3:+48903147 MsG0380014069.01.T01:CDS
GTAATCGGTGAAGGTGGCTC+TGG 0.340183 3:+48903100 MsG0380014069.01.T01:intron
AACGCAAAGTTGTCCGACTT+TGG 0.357753 3:+48903862 MsG0380014069.01.T01:CDS
GACTTTGGGTTGGGAAGACT+TGG 0.369235 3:+48903877 MsG0380014069.01.T01:CDS
ACGCAAAGTTGTCCGACTTT+GGG 0.377997 3:+48903863 MsG0380014069.01.T01:CDS
CACTTTAAGATTCAGAGAAA+TGG 0.381470 3:+48902948 MsG0380014069.01.T01:CDS
TCAGAATATGGGAAACTGTT+TGG 0.383111 3:+48902917 None:intergenic
TAATCGGTGAAGGTGGCTCT+GGG 0.433520 3:+48903101 MsG0380014069.01.T01:intron
CCAAATCTGCTTAAACTACT+TGG 0.444536 3:+48903368 MsG0380014069.01.T01:CDS
AAGTTGTCCGACTTTGGGTT+GGG 0.470191 3:+48903868 MsG0380014069.01.T01:CDS
TGACAATTTCAAAGGATCTA+GGG 0.520669 3:+48903148 MsG0380014069.01.T01:CDS
AAAGTTGTCCGACTTTGGGT+TGG 0.528541 3:+48903867 MsG0380014069.01.T01:CDS
GCATGTATTCATAAACCAGC+AGG 0.531644 3:-48903415 None:intergenic
ATCGGTGAAGGTGGCTCTGG+GGG 0.543178 3:+48903103 MsG0380014069.01.T01:intron
ATCAACAATGACAATTTCAA+AGG 0.566059 3:+48903140 MsG0380014069.01.T01:CDS
ACATGACTTTACAGAATGGA+AGG 0.570217 3:+48903220 MsG0380014069.01.T01:CDS
GTATTTGTGTTGCTGTGAAG+AGG 0.578870 3:+48903180 MsG0380014069.01.T01:CDS
ACTACTTGGCTATTGCAAAG+AGG 0.583924 3:+48903382 MsG0380014069.01.T01:CDS
TCCATTCTGTAAAGTCATGT+CGG 0.585474 3:-48903217 None:intergenic
ATGGTGATGTAGAAGTTGAG+AGG 0.586922 3:+48902967 MsG0380014069.01.T01:CDS
GCCGACATGACTTTACAGAA+TGG 0.597484 3:+48903216 MsG0380014069.01.T01:CDS
AGAGGATGACGAATACCTGC+TGG 0.598426 3:+48903400 MsG0380014069.01.T01:CDS
AATCGGTGAAGGTGGCTCTG+GGG 0.603023 3:+48903102 MsG0380014069.01.T01:intron
ACTTTGGGTTGGGAAGACTT+GGG 0.613886 3:+48903878 MsG0380014069.01.T01:CDS
AAGTCTTCCCAACCCAAAGT+CGG 0.642979 3:-48903875 None:intergenic
GATAGAAGCATAGCATGTGG+TGG 0.643256 3:+48903005 MsG0380014069.01.T01:CDS
GGTTTATGAATACATGCGAA+AGG 0.644265 3:+48903421 MsG0380014069.01.T01:CDS
GATGATAGAAGCATAGCATG+TGG 0.687839 3:+48903002 MsG0380014069.01.T01:CDS
TGTTTGGGTGCAGAGTGAAG+TGG 0.714939 3:+48903322 MsG0380014069.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAGTCCTATTATAAAAA+AGG - Chr3:48903844-48903863 None:intergenic 15.0%
!!! ACATTTTCCTTTTTTATAAT+AGG + Chr3:48903834-48903853 MsG0380014069.01.T01:intron 15.0%
!! ACACATAATCATAATATGTT+TGG + Chr3:48903306-48903325 MsG0380014069.01.T01:intron 20.0%
!! CACATAATCATAATATGTTT+GGG + Chr3:48903307-48903326 MsG0380014069.01.T01:intron 20.0%
!!! TTTTGATGATTTTTGAAATG+TGG + Chr3:48903716-48903735 MsG0380014069.01.T01:intron 20.0%
! ATCAACAATGACAATTTCAA+AGG + Chr3:48903140-48903159 MsG0380014069.01.T01:CDS 25.0%
! GTTCTTTATAAATAGTAGTC+TGG + Chr3:48903269-48903288 MsG0380014069.01.T01:intron 25.0%
! TTTAGTACAGATATGGTAAT+CGG + Chr3:48903085-48903104 MsG0380014069.01.T01:intron 25.0%
!!! TGATATGCAACTTATTTTGA+GGG + Chr3:48903802-48903821 MsG0380014069.01.T01:intron 25.0%
!!! TTGATATGCAACTTATTTTG+AGG + Chr3:48903801-48903820 MsG0380014069.01.T01:intron 25.0%
AAGGAACTTTAGTACAGATA+TGG + Chr3:48903078-48903097 MsG0380014069.01.T01:intron 30.0%
ATAAGGCTGAAGATAATGAT+AGG + Chr3:48903581-48903600 MsG0380014069.01.T01:intron 30.0%
ATGACAATTTCAAAGGATCT+AGG + Chr3:48903147-48903166 MsG0380014069.01.T01:CDS 30.0%
TAAGGCTGAAGATAATGATA+GGG + Chr3:48903582-48903601 MsG0380014069.01.T01:intron 30.0%
TGACAATTTCAAAGGATCTA+GGG + Chr3:48903148-48903167 MsG0380014069.01.T01:CDS 30.0%
TGAGTCCAAAAATTTCACAT+TGG + Chr3:48903036-48903055 MsG0380014069.01.T01:intron 30.0%
! CTCTTCCAATGTGAAATTTT+TGG - Chr3:48903044-48903063 None:intergenic 30.0%
!! CACTTTAAGATTCAGAGAAA+TGG + Chr3:48902948-48902967 MsG0380014069.01.T01:CDS 30.0%
AAGGCTGAAGATAATGATAG+GGG + Chr3:48903583-48903602 MsG0380014069.01.T01:intron 35.0%
ACATGACTTTACAGAATGGA+AGG + Chr3:48903220-48903239 MsG0380014069.01.T01:CDS 35.0%
CCAAATCTGCTTAAACTACT+TGG + Chr3:48903368-48903387 MsG0380014069.01.T01:CDS 35.0%
CCAAGTAGTTTAAGCAGATT+TGG - Chr3:48903371-48903390 None:intergenic 35.0%
GGTTTATGAATACATGCGAA+AGG + Chr3:48903421-48903440 MsG0380014069.01.T01:CDS 35.0%
TAAAGAACACTCCTACATTG+TGG - Chr3:48903257-48903276 None:intergenic 35.0%
TACTTCATCCAGCAAAATGT+TGG - Chr3:48903675-48903694 None:intergenic 35.0%
TCCATTCTGTAAAGTCATGT+CGG - Chr3:48903220-48903239 None:intergenic 35.0%
TTTGTATTCCTCCACAATGT+AGG + Chr3:48903243-48903262 MsG0380014069.01.T01:intron 35.0%
ACAGATATGGTAATCGGTGA+AGG + Chr3:48903091-48903110 MsG0380014069.01.T01:intron 40.0%
ACTACTTGGCTATTGCAAAG+AGG + Chr3:48903382-48903401 MsG0380014069.01.T01:CDS 40.0%
CACATTGGAAGAGTTGAGAT+CGG + Chr3:48903051-48903070 MsG0380014069.01.T01:intron 40.0%
GCATGTATTCATAAACCAGC+AGG - Chr3:48903418-48903437 None:intergenic 40.0%
TTCATCCAGCAAAATGTTGG+AGG - Chr3:48903672-48903691 None:intergenic 40.0%
! ATGGTGATGTAGAAGTTGAG+AGG + Chr3:48902967-48902986 MsG0380014069.01.T01:CDS 40.0%
! GATGATAGAAGCATAGCATG+TGG + Chr3:48903002-48903021 MsG0380014069.01.T01:CDS 40.0%
! GTATTTGTGTTGCTGTGAAG+AGG + Chr3:48903180-48903199 MsG0380014069.01.T01:CDS 40.0%
!! AGAGTGAAGTGGACTTTTTG+GGG + Chr3:48903333-48903352 MsG0380014069.01.T01:intron 40.0%
!! ATCTTCAGCCTTATTTCCCA+AGG - Chr3:48903575-48903594 None:intergenic 40.0%
!! CAGAGTGAAGTGGACTTTTT+GGG + Chr3:48903332-48903351 MsG0380014069.01.T01:intron 40.0%
!!! GTAAAGTCATGTCGGCTTTT+GGG - Chr3:48903212-48903231 None:intergenic 40.0%
!!! TAAAGTCATGTCGGCTTTTG+GGG - Chr3:48903211-48903230 None:intergenic 40.0%
!!! TGTAAAGTCATGTCGGCTTT+TGG - Chr3:48903213-48903232 None:intergenic 40.0%
!!! TTGTGTGTGTGTTGTTTTCC+AGG + Chr3:48903536-48903555 MsG0380014069.01.T01:intron 40.0%
AAAGTTGTCCGACTTTGGGT+TGG + Chr3:48903867-48903886 MsG0380014069.01.T01:CDS 45.0%
AACCACTGCCTTGGGAAATA+AGG + Chr3:48903564-48903583 MsG0380014069.01.T01:intron 45.0%
AACGCAAAGTTGTCCGACTT+TGG + Chr3:48903862-48903881 MsG0380014069.01.T01:CDS 45.0%
AAGAGTTGAGATCGGTCACA+AGG + Chr3:48903059-48903078 MsG0380014069.01.T01:intron 45.0%
AAGTCTTCCCAACCCAAAGT+CGG - Chr3:48903878-48903897 None:intergenic 45.0%
ACGCAAAGTTGTCCGACTTT+GGG + Chr3:48903863-48903882 MsG0380014069.01.T01:CDS 45.0%
AGAACACTCCTACATTGTGG+AGG - Chr3:48903254-48903273 None:intergenic 45.0%
ATAATGATAGGGGCTGCTAG+AGG + Chr3:48903593-48903612 MsG0380014069.01.T01:intron 45.0%
GATATGGTAATCGGTGAAGG+TGG + Chr3:48903094-48903113 MsG0380014069.01.T01:intron 45.0%
GCCGACATGACTTTACAGAA+TGG + Chr3:48903216-48903235 MsG0380014069.01.T01:CDS 45.0%
! AAGTTGTCCGACTTTGGGTT+GGG + Chr3:48903868-48903887 MsG0380014069.01.T01:CDS 45.0%
! CAACTCCTCCAACATTTTGC+TGG + Chr3:48903664-48903683 MsG0380014069.01.T01:intron 45.0%
! GATAGAAGCATAGCATGTGG+TGG + Chr3:48903005-48903024 MsG0380014069.01.T01:CDS 45.0%
!! ACTTTGGGTTGGGAAGACTT+GGG + Chr3:48903878-48903897 MsG0380014069.01.T01:CDS 45.0%
!! GCAGAGTGAAGTGGACTTTT+TGG + Chr3:48903331-48903350 MsG0380014069.01.T01:intron 45.0%
AGAGGATGACGAATACCTGC+TGG + Chr3:48903400-48903419 MsG0380014069.01.T01:CDS 50.0%
ATTTCCCAAGGCAGTGGTTG+CGG - Chr3:48903563-48903582 None:intergenic 50.0%
TAATCGGTGAAGGTGGCTCT+GGG + Chr3:48903101-48903120 MsG0380014069.01.T01:intron 50.0%
TGTTTGGGTGCAGAGTGAAG+TGG + Chr3:48903322-48903341 MsG0380014069.01.T01:intron 50.0%
! GTCGCGTACTTCTGAAGAGA+TGG - Chr3:48903459-48903478 None:intergenic 50.0%
!! AGCCTTATTTCCCAAGGCAG+TGG - Chr3:48903569-48903588 None:intergenic 50.0%
!! GACTTTGGGTTGGGAAGACT+TGG + Chr3:48903877-48903896 MsG0380014069.01.T01:CDS 50.0%
GTAATCGGTGAAGGTGGCTC+TGG + Chr3:48903100-48903119 MsG0380014069.01.T01:intron 55.0%
TTTCCCAAGGCAGTGGTTGC+GGG - Chr3:48903562-48903581 None:intergenic 55.0%
! AATCGGTGAAGGTGGCTCTG+GGG + Chr3:48903102-48903121 MsG0380014069.01.T01:intron 55.0%
! CTCTGGGGGTCTACAAAGGA+TGG + Chr3:48903117-48903136 MsG0380014069.01.T01:CDS 55.0%
!! ATCGGTGAAGGTGGCTCTGG+GGG + Chr3:48903103-48903122 MsG0380014069.01.T01:intron 60.0%
!! GTGGCTCTGGGGGTCTACAA+AGG + Chr3:48903113-48903132 MsG0380014069.01.T01:CDS 60.0%
AGGCCCGCAACCACTGCCTT+GGG + Chr3:48903556-48903575 MsG0380014069.01.T01:intron 65.0%
CAAGGCAGTGGTTGCGGGCC+TGG - Chr3:48903557-48903576 None:intergenic 70.0%
CAGGCCCGCAACCACTGCCT+TGG + Chr3:48903555-48903574 MsG0380014069.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48902924 48903909 48902924 ID=MsG0380014069.01;Name=MsG0380014069.01
Chr3 mRNA 48902924 48903909 48902924 ID=MsG0380014069.01.T01;Parent=MsG0380014069.01;Name=MsG0380014069.01.T01;_AED=0.55;_eAED=0.57;_QI=0|0|0|1|1|1|4|0|133
Chr3 exon 48902924 48903034 48902924 ID=MsG0380014069.01.T01:exon:8602;Parent=MsG0380014069.01.T01
Chr3 exon 48903113 48903241 48903113 ID=MsG0380014069.01.T01:exon:8603;Parent=MsG0380014069.01.T01
Chr3 exon 48903335 48903442 48903335 ID=MsG0380014069.01.T01:exon:8604;Parent=MsG0380014069.01.T01
Chr3 exon 48903856 48903909 48903856 ID=MsG0380014069.01.T01:exon:8605;Parent=MsG0380014069.01.T01
Chr3 CDS 48902924 48903034 48902924 ID=MsG0380014069.01.T01:cds;Parent=MsG0380014069.01.T01
Chr3 CDS 48903113 48903241 48903113 ID=MsG0380014069.01.T01:cds;Parent=MsG0380014069.01.T01
Chr3 CDS 48903335 48903442 48903335 ID=MsG0380014069.01.T01:cds;Parent=MsG0380014069.01.T01
Chr3 CDS 48903856 48903909 48903856 ID=MsG0380014069.01.T01:cds;Parent=MsG0380014069.01.T01
Gene Sequence

>MsG0380014069.01.T01

ATGGGAAACTGTTTGGTAAATTATCACTTTAAGATTCAGAGAAATGGTGATGTAGAAGTTGAGAGGAATGAAGCAGTAGATGATAGAAGCATAGCATGTGGTGGACAAATTGTGGCTCTGGGGGTCTACAAAGGATGGATCAACAATGACAATTTCAAAGGATCTAGGGTTAATGATCGTATTTGTGTTGCTGTGAAGAGGTGTAGCCCCAAAAGCCGACATGACTTTACAGAATGGAAGAGTGAAGTGGACTTTTTGGGGAAATACGATCATCCAAATCTGCTTAAACTACTTGGCTATTGCAAAGAGGATGACGAATACCTGCTGGTTTATGAATACATGCGAAAGGACTATAACGCAAAGTTGTCCGACTTTGGGTTGGGAAGACTTGGGCACCCATAG
Protein sequence

>MsG0380014069.01.T01

MGNCLVNYHFKIQRNGDVEVERNEAVDDRSIACGGQIVALGVYKGWINNDNFKGSRVNDRICVAVKRCSPKSRHDFTEWKSEVDFLGKYDHPNLLKLLGYCKEDDEYLLVYEYMRKDYNAKLSDFGLGRLGHP*