Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014394.01.T01 | XP_003600252.3 | 78.261 | 230 | 7 | 1 | 1 | 187 | 68 | 297 | 2.79E-121 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014394.01.T01 | Q6ICW6 | 62.273 | 220 | 40 | 1 | 1 | 177 | 73 | 292 | 1.89E-95 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014394.01.T01 | A0A396INP8 | 78.261 | 230 | 7 | 1 | 1 | 187 | 68 | 297 | 1.33e-121 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014394.01.T01 | MTR_3g056010 | 78.261 | 230 | 7 | 1 | 1 | 187 | 68 | 297 | 3.77e-125 | 354 |
| MsG0380014394.01.T01 | MTR_3g056025 | 78.166 | 229 | 7 | 1 | 1 | 186 | 68 | 296 | 1.08e-124 | 353 |
| MsG0380014394.01.T01 | MTR_7g029020 | 72.926 | 229 | 19 | 1 | 1 | 186 | 68 | 296 | 4.35e-115 | 329 |
| MsG0380014394.01.T01 | MTR_3g099940 | 71.806 | 227 | 21 | 1 | 1 | 184 | 69 | 295 | 5.85e-112 | 321 |
| MsG0380014394.01.T01 | MTR_5g094390 | 67.281 | 217 | 28 | 1 | 1 | 174 | 69 | 285 | 1.18e-101 | 295 |
| MsG0380014394.01.T01 | MTR_5g097530 | 58.929 | 224 | 49 | 1 | 1 | 181 | 65 | 288 | 4.49e-92 | 270 |
| MsG0380014394.01.T01 | MTR_0283s0050 | 58.416 | 202 | 41 | 1 | 1 | 159 | 65 | 266 | 3.34e-81 | 242 |
| MsG0380014394.01.T01 | MTR_3g076650 | 50.926 | 216 | 63 | 1 | 2 | 174 | 69 | 284 | 1.63e-68 | 219 |
| MsG0380014394.01.T01 | MTR_8g027265 | 49.767 | 215 | 66 | 1 | 2 | 174 | 81 | 295 | 1.46e-66 | 215 |
| MsG0380014394.01.T01 | MTR_3g080960 | 48.372 | 215 | 69 | 1 | 2 | 174 | 63 | 277 | 9.55e-64 | 207 |
| MsG0380014394.01.T01 | MTR_7g114680 | 48.430 | 223 | 71 | 2 | 2 | 180 | 53 | 275 | 1.42e-63 | 208 |
| MsG0380014394.01.T01 | MTR_1g103850 | 49.550 | 222 | 69 | 2 | 2 | 180 | 67 | 288 | 1.48e-63 | 208 |
| MsG0380014394.01.T01 | MTR_7g114680 | 48.430 | 223 | 71 | 2 | 2 | 180 | 67 | 289 | 1.88e-63 | 208 |
| MsG0380014394.01.T01 | MTR_8g093090 | 46.262 | 214 | 73 | 1 | 2 | 173 | 76 | 289 | 1.16e-62 | 204 |
| MsG0380014394.01.T01 | MTR_8g093090 | 46.262 | 214 | 73 | 1 | 2 | 173 | 94 | 307 | 1.51e-62 | 204 |
| MsG0380014394.01.T01 | MTR_3g095680 | 47.685 | 216 | 71 | 1 | 2 | 175 | 76 | 291 | 1.54e-62 | 204 |
| MsG0380014394.01.T01 | MTR_6g016260 | 48.611 | 216 | 68 | 1 | 2 | 174 | 49 | 264 | 1.70e-62 | 202 |
| MsG0380014394.01.T01 | MTR_3g095680 | 47.685 | 216 | 71 | 1 | 2 | 175 | 108 | 323 | 3.11e-62 | 204 |
| MsG0380014394.01.T01 | MTR_1g081330 | 47.534 | 223 | 73 | 2 | 2 | 180 | 67 | 289 | 9.96e-61 | 201 |
| MsG0380014394.01.T01 | MTR_5g075220 | 46.296 | 216 | 73 | 1 | 2 | 174 | 70 | 285 | 2.46e-60 | 197 |
| MsG0380014394.01.T01 | MTR_5g094390 | 83.333 | 102 | 17 | 0 | 1 | 102 | 69 | 170 | 8.71e-60 | 186 |
| MsG0380014394.01.T01 | MTR_4g028830 | 45.495 | 222 | 78 | 1 | 2 | 180 | 67 | 288 | 1.24e-59 | 196 |
| MsG0380014394.01.T01 | MTR_7g072860 | 44.144 | 222 | 81 | 1 | 2 | 180 | 71 | 292 | 1.35e-59 | 196 |
| MsG0380014394.01.T01 | MTR_7g072640 | 44.144 | 222 | 81 | 1 | 2 | 180 | 71 | 292 | 1.35e-59 | 196 |
| MsG0380014394.01.T01 | MTR_8g093090 | 45.411 | 207 | 71 | 1 | 9 | 173 | 1 | 207 | 3.92e-59 | 193 |
| MsG0380014394.01.T01 | MTR_1g081330 | 47.059 | 204 | 64 | 2 | 21 | 180 | 1 | 204 | 4.10e-53 | 179 |
| MsG0380014394.01.T01 | MTR_3g056013 | 90.541 | 74 | 7 | 0 | 114 | 187 | 8 | 81 | 3.68e-43 | 139 |
| MsG0380014394.01.T01 | MTR_8g093090 | 44.444 | 144 | 38 | 1 | 72 | 173 | 2 | 145 | 6.53e-35 | 128 |
| MsG0380014394.01.T01 | MTR_5g049520 | 66.250 | 80 | 27 | 0 | 1 | 80 | 84 | 163 | 4.58e-32 | 114 |
| MsG0380014394.01.T01 | MTR_3g095680 | 43.151 | 146 | 41 | 1 | 72 | 175 | 2 | 147 | 7.09e-32 | 120 |
| MsG0380014394.01.T01 | MTR_0068s0070 | 72.727 | 55 | 15 | 0 | 26 | 80 | 65 | 119 | 2.23e-23 | 90.1 |
| MsG0380014394.01.T01 | MTR_5g049560 | 46.154 | 104 | 27 | 2 | 1 | 104 | 188 | 262 | 3.35e-22 | 90.9 |
| MsG0380014394.01.T01 | MTR_4g094415 | 27.397 | 219 | 105 | 8 | 2 | 174 | 207 | 417 | 6.09e-17 | 78.2 |
| MsG0380014394.01.T01 | MTR_3g073260 | 30.000 | 150 | 81 | 6 | 31 | 179 | 24 | 150 | 5.77e-16 | 72.0 |
| MsG0380014394.01.T01 | MTR_5g059880 | 26.126 | 222 | 102 | 9 | 2 | 173 | 235 | 444 | 7.44e-14 | 69.3 |
| MsG0380014394.01.T01 | MTR_5g059940 | 25.463 | 216 | 107 | 8 | 4 | 173 | 170 | 377 | 1.13e-13 | 68.6 |
| MsG0380014394.01.T01 | MTR_5g059910 | 26.389 | 216 | 105 | 8 | 4 | 173 | 176 | 383 | 1.28e-13 | 68.6 |
| MsG0380014394.01.T01 | MTR_5g097540 | 44.444 | 81 | 21 | 2 | 1 | 81 | 242 | 298 | 2.81e-13 | 67.0 |
| MsG0380014394.01.T01 | MTR_1g105290 | 26.126 | 222 | 108 | 7 | 2 | 173 | 102 | 317 | 3.49e-13 | 67.4 |
| MsG0380014394.01.T01 | MTR_5g060350 | 26.364 | 220 | 100 | 9 | 4 | 173 | 366 | 573 | 3.78e-13 | 67.4 |
| MsG0380014394.01.T01 | MTR_4g094415 | 34.821 | 112 | 67 | 4 | 2 | 113 | 207 | 312 | 7.21e-13 | 66.2 |
| MsG0380014394.01.T01 | MTR_1g105290 | 27.149 | 221 | 107 | 8 | 2 | 173 | 102 | 317 | 1.04e-12 | 65.9 |
| MsG0380014394.01.T01 | MTR_1g105290 | 27.149 | 221 | 107 | 8 | 2 | 173 | 102 | 317 | 1.38e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014394.01.T01 | AT5G55560 | 62.273 | 220 | 40 | 1 | 1 | 177 | 73 | 292 | 1.93e-96 | 282 |
| MsG0380014394.01.T01 | AT3G48260 | 50.000 | 216 | 65 | 1 | 2 | 174 | 65 | 280 | 1.32e-67 | 215 |
| MsG0380014394.01.T01 | AT1G49160 | 49.537 | 216 | 67 | 1 | 2 | 175 | 53 | 268 | 8.13e-65 | 208 |
| MsG0380014394.01.T01 | AT1G49160 | 49.537 | 216 | 67 | 1 | 2 | 175 | 71 | 286 | 1.37e-64 | 208 |
| MsG0380014394.01.T01 | AT1G49160 | 49.537 | 216 | 67 | 1 | 2 | 175 | 118 | 333 | 2.03e-64 | 206 |
| MsG0380014394.01.T01 | AT5G41990 | 48.837 | 215 | 68 | 1 | 2 | 174 | 72 | 286 | 4.54e-64 | 207 |
| MsG0380014394.01.T01 | AT1G49160 | 49.537 | 216 | 67 | 1 | 2 | 175 | 118 | 333 | 6.31e-64 | 207 |
| MsG0380014394.01.T01 | AT3G18750 | 48.837 | 215 | 68 | 1 | 2 | 174 | 53 | 267 | 6.52e-64 | 206 |
| MsG0380014394.01.T01 | AT3G18750 | 48.837 | 215 | 68 | 1 | 2 | 174 | 71 | 285 | 9.26e-64 | 206 |
| MsG0380014394.01.T01 | AT3G18750 | 48.837 | 215 | 68 | 1 | 2 | 174 | 71 | 285 | 9.26e-64 | 206 |
| MsG0380014394.01.T01 | AT3G18750 | 48.837 | 215 | 68 | 1 | 2 | 174 | 71 | 285 | 9.26e-64 | 206 |
| MsG0380014394.01.T01 | AT3G04910 | 47.982 | 223 | 72 | 2 | 2 | 180 | 44 | 266 | 4.97e-62 | 203 |
| MsG0380014394.01.T01 | AT3G04910 | 47.982 | 223 | 72 | 2 | 2 | 180 | 67 | 289 | 6.06e-62 | 204 |
| MsG0380014394.01.T01 | AT5G28080 | 47.442 | 215 | 71 | 1 | 2 | 174 | 31 | 245 | 1.83e-61 | 197 |
| MsG0380014394.01.T01 | AT5G28080 | 47.442 | 215 | 71 | 1 | 2 | 174 | 68 | 282 | 3.20e-61 | 197 |
| MsG0380014394.01.T01 | AT1G64630 | 46.977 | 215 | 72 | 1 | 2 | 174 | 59 | 273 | 1.92e-59 | 194 |
| MsG0380014394.01.T01 | AT5G58350 | 44.907 | 216 | 76 | 1 | 2 | 174 | 62 | 277 | 4.09e-58 | 191 |
| MsG0380014394.01.T01 | AT3G51630 | 45.778 | 225 | 77 | 2 | 2 | 183 | 68 | 290 | 2.85e-57 | 189 |
| MsG0380014394.01.T01 | AT3G51630 | 45.778 | 225 | 77 | 2 | 2 | 183 | 68 | 290 | 2.85e-57 | 189 |
| MsG0380014394.01.T01 | AT3G22420 | 43.779 | 217 | 80 | 1 | 2 | 176 | 67 | 283 | 3.12e-57 | 189 |
| MsG0380014394.01.T01 | AT3G22420 | 43.779 | 217 | 80 | 1 | 2 | 176 | 67 | 283 | 3.70e-57 | 189 |
| MsG0380014394.01.T01 | AT3G22420 | 43.779 | 217 | 80 | 1 | 2 | 176 | 138 | 354 | 8.20e-57 | 189 |
| MsG0380014394.01.T01 | AT3G22420 | 43.779 | 217 | 80 | 1 | 2 | 176 | 138 | 354 | 1.16e-56 | 189 |
| MsG0380014394.01.T01 | AT3G48260 | 50.543 | 184 | 48 | 1 | 34 | 174 | 2 | 185 | 2.21e-56 | 183 |
| MsG0380014394.01.T01 | AT5G28080 | 47.449 | 196 | 61 | 1 | 21 | 174 | 1 | 196 | 2.33e-54 | 177 |
| MsG0380014394.01.T01 | AT5G28080 | 47.449 | 196 | 61 | 1 | 21 | 174 | 1 | 196 | 2.33e-54 | 177 |
| MsG0380014394.01.T01 | AT5G28080 | 47.449 | 196 | 61 | 1 | 21 | 174 | 1 | 196 | 2.33e-54 | 177 |
| MsG0380014394.01.T01 | AT5G28080 | 47.449 | 196 | 61 | 1 | 21 | 174 | 1 | 196 | 2.33e-54 | 177 |
| MsG0380014394.01.T01 | AT5G28080 | 47.449 | 196 | 61 | 1 | 21 | 174 | 1 | 196 | 2.33e-54 | 177 |
| MsG0380014394.01.T01 | AT3G18750 | 49.133 | 173 | 63 | 2 | 2 | 174 | 71 | 218 | 2.05e-47 | 162 |
| MsG0380014394.01.T01 | AT3G18750 | 49.133 | 173 | 63 | 2 | 2 | 174 | 71 | 218 | 2.05e-47 | 162 |
| MsG0380014394.01.T01 | AT3G04910 | 47.853 | 163 | 41 | 2 | 62 | 180 | 1 | 163 | 1.75e-39 | 141 |
| MsG0380014394.01.T01 | AT1G49160 | 45.912 | 159 | 44 | 1 | 59 | 175 | 1 | 159 | 5.23e-39 | 138 |
| MsG0380014394.01.T01 | AT1G49160 | 45.912 | 159 | 44 | 1 | 59 | 175 | 1 | 159 | 5.23e-39 | 138 |
| MsG0380014394.01.T01 | AT1G49160 | 45.912 | 159 | 44 | 1 | 59 | 175 | 1 | 159 | 5.23e-39 | 138 |
| MsG0380014394.01.T01 | AT3G22420 | 46.400 | 125 | 67 | 0 | 2 | 126 | 67 | 191 | 1.07e-35 | 131 |
| MsG0380014394.01.T01 | AT3G22420 | 56.164 | 73 | 32 | 0 | 104 | 176 | 243 | 315 | 2.37e-19 | 85.1 |
| MsG0380014394.01.T01 | AT3G22420 | 46.400 | 125 | 67 | 0 | 2 | 126 | 67 | 191 | 1.09e-35 | 131 |
| MsG0380014394.01.T01 | AT3G22420 | 56.164 | 73 | 32 | 0 | 104 | 176 | 243 | 315 | 2.14e-19 | 85.5 |
| MsG0380014394.01.T01 | AT4G08500 | 29.091 | 220 | 99 | 9 | 2 | 173 | 376 | 586 | 3.71e-19 | 84.7 |
| MsG0380014394.01.T01 | AT4G12020 | 31.343 | 201 | 100 | 9 | 2 | 173 | 1661 | 1852 | 8.59e-19 | 84.0 |
| MsG0380014394.01.T01 | AT4G12020 | 31.343 | 201 | 100 | 9 | 2 | 173 | 1669 | 1860 | 8.84e-19 | 84.0 |
| MsG0380014394.01.T01 | AT5G28080 | 56.944 | 72 | 31 | 0 | 103 | 174 | 18 | 89 | 2.81e-18 | 80.9 |
| MsG0380014394.01.T01 | AT4G08480 | 30.000 | 220 | 97 | 9 | 2 | 173 | 544 | 754 | 3.39e-18 | 82.0 |
| MsG0380014394.01.T01 | AT4G08470 | 27.397 | 219 | 104 | 8 | 2 | 173 | 264 | 474 | 2.78e-17 | 79.3 |
| MsG0380014394.01.T01 | AT4G08470 | 27.397 | 219 | 104 | 8 | 2 | 173 | 346 | 556 | 3.20e-17 | 79.0 |
| MsG0380014394.01.T01 | AT1G53570 | 28.646 | 192 | 113 | 6 | 2 | 174 | 258 | 444 | 9.22e-17 | 77.8 |
| MsG0380014394.01.T01 | AT1G09000 | 28.054 | 221 | 104 | 7 | 2 | 173 | 116 | 330 | 2.04e-16 | 76.6 |
| MsG0380014394.01.T01 | AT1G09000 | 28.054 | 221 | 104 | 7 | 2 | 173 | 116 | 330 | 3.41e-16 | 76.3 |
| MsG0380014394.01.T01 | AT1G54960 | 27.602 | 221 | 105 | 7 | 2 | 173 | 115 | 329 | 2.11e-15 | 73.9 |
| MsG0380014394.01.T01 | AT1G54960 | 27.602 | 221 | 105 | 7 | 2 | 173 | 115 | 329 | 2.11e-15 | 73.9 |
| MsG0380014394.01.T01 | AT4G08470 | 33.333 | 108 | 66 | 4 | 2 | 109 | 346 | 447 | 5.28e-12 | 63.9 |
Find 28 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTGGTCTAAGCAAATTT+TGG | 0.283616 | 3:-54103973 | MsG0380014394.01.T01:CDS |
| TCATTGCACTTTACAATGTT+TGG | 0.285058 | 3:-54104103 | MsG0380014394.01.T01:CDS |
| ACATTGTCACATTCACTATA+TGG | 0.341582 | 3:+54103593 | None:intergenic |
| AATGTATATTAGGTTAAGAT+TGG | 0.380565 | 3:-54103780 | MsG0380014394.01.T01:intron |
| GTGGGAATTTGAGGGAGTAT+AGG | 0.417911 | 3:-54104031 | MsG0380014394.01.T01:CDS |
| TTACAATGTTTGGAGGGATA+AGG | 0.426660 | 3:-54104093 | MsG0380014394.01.T01:CDS |
| ATATACAAGAAGGTGACTTC+AGG | 0.446476 | 3:-54103563 | MsG0380014394.01.T01:CDS |
| TAGGTTAAGATTGGTGACTT+AGG | 0.448927 | 3:-54103771 | MsG0380014394.01.T01:intron |
| CTATTAACGCTTTGAAGAAG+TGG | 0.458497 | 3:-54103989 | MsG0380014394.01.T01:CDS |
| TCAGCAGAAGGTCTATCCCT+TGG | 0.484549 | 3:+54103467 | None:intergenic |
| TTGTACAAGTGGGAATTTGA+GGG | 0.489551 | 3:-54104039 | MsG0380014394.01.T01:CDS |
| TTTGTACAAGTGGGAATTTG+AGG | 0.501885 | 3:-54104040 | MsG0380014394.01.T01:CDS |
| ATCACCGAGGTTTGTACAAG+TGG | 0.519419 | 3:-54104050 | MsG0380014394.01.T01:CDS |
| TTTATCTTGTTCAAGGATTG+CGG | 0.530284 | 3:+54103533 | None:intergenic |
| TTCTGCTGAGGAATTGCTAA+AGG | 0.536575 | 3:-54103453 | MsG0380014394.01.T01:CDS |
| TTGCACTTTACAATGTTTGG+AGG | 0.543593 | 3:-54104100 | MsG0380014394.01.T01:CDS |
| TGCACTTTACAATGTTTGGA+GGG | 0.546438 | 3:-54104099 | MsG0380014394.01.T01:CDS |
| TGGAATGTTAGTATTAGAGA+TGG | 0.547641 | 3:-54103630 | MsG0380014394.01.T01:intron |
| TGTCAATGGAAATACTGGCC+AGG | 0.553529 | 3:-54103880 | MsG0380014394.01.T01:intron |
| TTTAGCAATTCCTCAGCAGA+AGG | 0.580675 | 3:+54103455 | None:intergenic |
| AAAAGTGTCTCGCTCAACCA+AGG | 0.600241 | 3:-54103484 | MsG0380014394.01.T01:CDS |
| TGTTGCAAAGATATACAAGA+AGG | 0.609288 | 3:-54103573 | MsG0380014394.01.T01:CDS |
| AGGTCTCTATGAATGATACA+AGG | 0.636667 | 3:+54103921 | None:intergenic |
| AAAGTGTCTCGCTCAACCAA+GGG | 0.643106 | 3:-54103483 | MsG0380014394.01.T01:CDS |
| TCACCGAGGTTTGTACAAGT+GGG | 0.644778 | 3:-54104049 | MsG0380014394.01.T01:CDS |
| ATTCCCACTTGTACAAACCT+CGG | 0.651475 | 3:+54104046 | None:intergenic |
| CACACTTAATTTCATCACCG+AGG | 0.662122 | 3:-54104063 | MsG0380014394.01.T01:CDS |
| AAGGGATAGACCTTCTGCTG+AGG | 0.674374 | 3:-54103465 | MsG0380014394.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGTTTTAATGTATATT+AGG | - | Chr3:54103771-54103790 | MsG0380014394.01.T01:intron | 10.0% |
| !! | AATGTATATTAGGTTAAGAT+TGG | - | Chr3:54103781-54103800 | MsG0380014394.01.T01:intron | 20.0% |
| ! | TAATACTAACATTCCAAATG+AGG | + | Chr3:54103927-54103946 | None:intergenic | 25.0% |
| ! | TACTCTACATCATCAAAAAA+AGG | + | Chr3:54104136-54104155 | None:intergenic | 25.0% |
| !! | TACATCTTTTATCTTGTTCA+AGG | + | Chr3:54104038-54104057 | None:intergenic | 25.0% |
| ACATCTTGAGATAAACAACA+TGG | + | Chr3:54103737-54103756 | None:intergenic | 30.0% | |
| ACATTGTCACATTCACTATA+TGG | + | Chr3:54103971-54103990 | None:intergenic | 30.0% | |
| TCATTGCACTTTACAATGTT+TGG | - | Chr3:54103458-54103477 | MsG0380014394.01.T01:CDS | 30.0% | |
| TGAAACAGAAATAATGTACC+TGG | + | Chr3:54103702-54103721 | None:intergenic | 30.0% | |
| TGGAATGTTAGTATTAGAGA+TGG | - | Chr3:54103931-54103950 | MsG0380014394.01.T01:CDS | 30.0% | |
| TGTTGCAAAGATATACAAGA+AGG | - | Chr3:54103988-54104007 | MsG0380014394.01.T01:CDS | 30.0% | |
| TTTATCTTGTTCAAGGATTG+CGG | + | Chr3:54104031-54104050 | None:intergenic | 30.0% | |
| ! | GTTTTTGTCAATGGAAATAC+TGG | - | Chr3:54103676-54103695 | MsG0380014394.01.T01:intron | 30.0% |
| !! | TGCAGTAATGTTTTTGTCAA+TGG | - | Chr3:54103667-54103686 | MsG0380014394.01.T01:intron | 30.0% |
| AGGTCTCTATGAATGATACA+AGG | + | Chr3:54103643-54103662 | None:intergenic | 35.0% | |
| ATATACAAGAAGGTGACTTC+AGG | - | Chr3:54103998-54104017 | MsG0380014394.01.T01:CDS | 35.0% | |
| CAAAAACATTACTGCAGTTG+AGG | + | Chr3:54103663-54103682 | None:intergenic | 35.0% | |
| TAATCCTCTTCATATAGCTC+TGG | + | Chr3:54103883-54103902 | None:intergenic | 35.0% | |
| TGAAGAGGATTACACAGAAA+TGG | - | Chr3:54103891-54103910 | MsG0380014394.01.T01:CDS | 35.0% | |
| TGCACTTTACAATGTTTGGA+GGG | - | Chr3:54103462-54103481 | MsG0380014394.01.T01:CDS | 35.0% | |
| TGGTAGACATATACCTCATT+TGG | - | Chr3:54103911-54103930 | MsG0380014394.01.T01:CDS | 35.0% | |
| TTACAATGTTTGGAGGGATA+AGG | - | Chr3:54103468-54103487 | MsG0380014394.01.T01:CDS | 35.0% | |
| TTGCACTTTACAATGTTTGG+AGG | - | Chr3:54103461-54103480 | MsG0380014394.01.T01:CDS | 35.0% | |
| TTGTACAAGTGGGAATTTGA+GGG | - | Chr3:54103522-54103541 | MsG0380014394.01.T01:CDS | 35.0% | |
| TTTGTACAAGTGGGAATTTG+AGG | - | Chr3:54103521-54103540 | MsG0380014394.01.T01:CDS | 35.0% | |
| ! | GAAGTGGTCTAAGCAAATTT+TGG | - | Chr3:54103588-54103607 | MsG0380014394.01.T01:CDS | 35.0% |
| ! | TAAGATTGGTGACTTAGGTT+TGG | - | Chr3:54103795-54103814 | MsG0380014394.01.T01:intron | 35.0% |
| ! | TAGGTTAAGATTGGTGACTT+AGG | - | Chr3:54103790-54103809 | MsG0380014394.01.T01:intron | 35.0% |
| ! | TGGTCTAAGCAAATTTTGGA+AGG | - | Chr3:54103592-54103611 | MsG0380014394.01.T01:CDS | 35.0% |
| !! | CTATTAACGCTTTGAAGAAG+TGG | - | Chr3:54103572-54103591 | MsG0380014394.01.T01:CDS | 35.0% |
| !! | GGTCTAAGCAAATTTTGGAA+GGG | - | Chr3:54103593-54103612 | MsG0380014394.01.T01:CDS | 35.0% |
| ATTCCCACTTGTACAAACCT+CGG | + | Chr3:54103518-54103537 | None:intergenic | 40.0% | |
| CACACTTAATTTCATCACCG+AGG | - | Chr3:54103498-54103517 | MsG0380014394.01.T01:CDS | 40.0% | |
| TTAGGTTTGGCAGCAATTGT+GGG | - | Chr3:54103808-54103827 | MsG0380014394.01.T01:intron | 40.0% | |
| TTCTGCTGAGGAATTGCTAA+AGG | - | Chr3:54104108-54104127 | MsG0380014394.01.T01:CDS | 40.0% | |
| TTTAGCAATTCCTCAGCAGA+AGG | + | Chr3:54104109-54104128 | None:intergenic | 40.0% | |
| ATCACCGAGGTTTGTACAAG+TGG | - | Chr3:54103511-54103530 | MsG0380014394.01.T01:CDS | 45.0% | |
| CATTCAGCGCATTCAGTTCT+AGG | - | Chr3:54103838-54103857 | MsG0380014394.01.T01:intron | 45.0% | |
| CTTAGGTTTGGCAGCAATTG+TGG | - | Chr3:54103807-54103826 | MsG0380014394.01.T01:intron | 45.0% | |
| TCACCGAGGTTTGTACAAGT+GGG | - | Chr3:54103512-54103531 | MsG0380014394.01.T01:CDS | 45.0% | |
| TCTAGGCACACCGGAATTTA+TGG | - | Chr3:54103855-54103874 | MsG0380014394.01.T01:intron | 45.0% | |
| TGTCAATGGAAATACTGGCC+AGG | - | Chr3:54103681-54103700 | MsG0380014394.01.T01:intron | 45.0% | |
| ! | AAAGTGTCTCGCTCAACCAA+GGG | - | Chr3:54104078-54104097 | MsG0380014394.01.T01:CDS | 45.0% |
| ! | GTGGGAATTTGAGGGAGTAT+AGG | - | Chr3:54103530-54103549 | MsG0380014394.01.T01:CDS | 45.0% |
| !! | AAAAGTGTCTCGCTCAACCA+AGG | - | Chr3:54104077-54104096 | MsG0380014394.01.T01:CDS | 45.0% |
| !! | AGCTCTGGTGCCATAAATTC+CGG | + | Chr3:54103868-54103887 | None:intergenic | 45.0% |
| AAGGGATAGACCTTCTGCTG+AGG | - | Chr3:54104096-54104115 | MsG0380014394.01.T01:CDS | 50.0% | |
| GGCACCAGAGCTATATGAAG+AGG | - | Chr3:54103876-54103895 | MsG0380014394.01.T01:intron | 50.0% | |
| TCAGCAGAAGGTCTATCCCT+TGG | + | Chr3:54104097-54104116 | None:intergenic | 50.0% | |
| !! | GCATTCAGTTCTAGGCACAC+CGG | - | Chr3:54103846-54103865 | MsG0380014394.01.T01:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 54103400 | 54104183 | 54103400 | ID=MsG0380014394.01;Name=MsG0380014394.01 |
| Chr3 | mRNA | 54103400 | 54104183 | 54103400 | ID=MsG0380014394.01.T01;Parent=MsG0380014394.01;Name=MsG0380014394.01.T01;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|187 |
| Chr3 | exon | 54103881 | 54104183 | 54103881 | ID=MsG0380014394.01.T01:exon:10048;Parent=MsG0380014394.01.T01 |
| Chr3 | exon | 54103772 | 54103790 | 54103772 | ID=MsG0380014394.01.T01:exon:10047;Parent=MsG0380014394.01.T01 |
| Chr3 | exon | 54103400 | 54103641 | 54103400 | ID=MsG0380014394.01.T01:exon:10046;Parent=MsG0380014394.01.T01 |
| Chr3 | CDS | 54103881 | 54104183 | 54103881 | ID=MsG0380014394.01.T01:cds;Parent=MsG0380014394.01.T01 |
| Chr3 | CDS | 54103772 | 54103790 | 54103772 | ID=MsG0380014394.01.T01:cds;Parent=MsG0380014394.01.T01 |
| Chr3 | CDS | 54103400 | 54103641 | 54103400 | ID=MsG0380014394.01.T01:cds;Parent=MsG0380014394.01.T01 |
| Gene Sequence |
| Protein sequence |
