AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014518.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014518.01.T01 MTR_7g098910 92.063 63 5 0 70 132 21 83 2.42e-36 124
MsG0380014518.01.T01 MTR_0022s0450 73.214 56 15 0 77 132 40 95 6.80e-22 85.9
MsG0380014518.01.T01 MTR_7g099500 61.905 63 24 0 70 132 10 72 1.44e-21 85.9
MsG0380014518.01.T01 MTR_8g063580 58.730 63 26 0 70 132 11 73 1.42e-18 78.6
MsG0380014518.01.T01 MTR_3g075390 69.811 53 15 1 129 180 225 277 1.87e-16 76.6
MsG0380014518.01.T01 MTR_4g104370 64.000 50 17 1 132 180 227 276 3.14e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014518.01.T01 AT5G26594 55.556 63 28 0 70 132 17 79 2.48e-19 80.5
MsG0380014518.01.T01 AT5G50260 66.000 50 16 1 132 180 226 275 1.97e-13 67.8
MsG0380014518.01.T01 AT3G48340 70.455 44 12 1 138 180 234 277 1.63e-11 62.4

Find 43 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTTCGATCCCTTTA+AGG 0.088942 3:+55958527 None:intergenic
ACATCTATGGCTACGGAAAC+AGG 0.259636 3:+55957073 None:intergenic
GGCTGGATCCAACACCTTAA+AGG 0.285594 3:-55958541 MsG0380014518.01.T01:CDS
ATCAGATCCTCCGACATCTA+TGG 0.391207 3:+55957060 None:intergenic
TTTCGATCCCTTTAAGGTGT+TGG 0.418051 3:+55958533 None:intergenic
TGATTACCTCATAGTAGAAC+TGG 0.423082 3:+55957035 None:intergenic
AAGGTTTATGCCAGTGGAAC+GGG 0.429771 3:-55960924 None:intergenic
GCTGGATCCAACACCTTAAA+GGG 0.429902 3:-55958540 MsG0380014518.01.T01:CDS
TGAATCTCATCCACCGCAAA+AGG 0.440950 3:+55956863 None:intergenic
AAGGAAATGCCTGTCATGAA+TGG 0.455995 3:-55958291 MsG0380014518.01.T01:CDS
AATGCATCTTGATCGTTAGT+TGG 0.482539 3:+55957115 None:intergenic
TAGACACCAGCATTTGATGA+TGG 0.483375 3:-55958505 MsG0380014518.01.T01:CDS
GGCGATCAATTGACACAGTT+GGG 0.486500 3:+55957149 None:intergenic
TTGTTTGTTCAGGGATTGGG+TGG 0.491231 3:-55956900 MsG0380014518.01.T01:intron
CAGAAAGTGTCCCGTTCCAC+TGG 0.492128 3:+55960914 None:intergenic
GATCCAGCCTCTTCATCAAA+AGG 0.496221 3:+55958555 None:intergenic
TGATTTCCAGTTCTACTATG+AGG 0.502533 3:-55957041 MsG0380014518.01.T01:intron
TGGCGATCAATTGACACAGT+TGG 0.502936 3:+55957148 None:intergenic
AGGAAATGCCTGTCATGAAT+GGG 0.510485 3:-55958290 MsG0380014518.01.T01:CDS
GGGATTGGGTGGATTTAGAC+CGG 0.524287 3:-55956889 MsG0380014518.01.T01:CDS
CGGGACACTTTCTGTAAGGA+TGG 0.532538 3:-55960905 MsG0380014518.01.T01:CDS
ATGGACCGCACAATGATAAG+AGG 0.536801 3:-55960886 MsG0380014518.01.T01:CDS
TCCTCCGACATCTATGGCTA+CGG 0.542667 3:+55957066 None:intergenic
CGAGGTCTATTGAAAAGAGC+TGG 0.553107 3:-55958399 MsG0380014518.01.T01:CDS
GCATTTGATGATGGTCAAAA+CGG 0.553431 3:-55958496 MsG0380014518.01.T01:CDS
ACCTCAATCCCATTCATGAC+AGG 0.555433 3:+55958282 None:intergenic
GGAACGGGACACTTTCTGTA+AGG 0.564660 3:-55960909 MsG0380014518.01.T01:CDS
GTCCGGTGTTAGCCTCAGAT+AGG 0.566996 3:-55960862 MsG0380014518.01.T01:CDS
CATCCACCGCAAAAGGTCAC+CGG 0.580322 3:+55956870 None:intergenic
GCCTGTCATGAATGGGATTG+AGG 0.582215 3:-55958283 MsG0380014518.01.T01:intron
GCACAATGATAAGAGGAGTC+CGG 0.584058 3:-55960879 MsG0380014518.01.T01:CDS
GAAGGTTTATGCCAGTGGAA+CGG 0.591286 3:-55960925 None:intergenic
ATACGGAAGGTTTATGCCAG+TGG 0.601594 3:-55960930 None:intergenic
CGTTAGTTGGAACAATCTCA+TGG 0.602898 3:+55957128 None:intergenic
TATGGCTACGGAAACAGGGT+TGG 0.603682 3:+55957078 None:intergenic
CATCTATGGCTACGGAAACA+GGG 0.614019 3:+55957074 None:intergenic
TTCCTATCTGAGGCTAACAC+CGG 0.635539 3:+55960860 None:intergenic
GCTGTAGATATTCATTGCAG+TGG 0.642650 3:-55958342 MsG0380014518.01.T01:CDS
GGACTCCTCTTATCATTGTG+CGG 0.642761 3:+55960881 None:intergenic
GTTTCCGTAGCCATAGATGT+CGG 0.644554 3:-55957070 MsG0380014518.01.T01:CDS
CCGGTGAAAATTCCTATCTG+AGG 0.649459 3:+55960850 None:intergenic
TCCGTAGCCATAGATGTCGG+AGG 0.692693 3:-55957067 MsG0380014518.01.T01:CDS
CTTGTTCGAATGATTCATCG+AGG 0.717669 3:-55958417 MsG0380014518.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAATAAAATTACAAT+CGG - Chr3:55958567-55958586 MsG0380014518.01.T01:CDS 10.0%
!!! AATATAATTTTTACCATTTA+TGG + Chr3:55959056-55959075 None:intergenic 10.0%
!! AAATAAAAATAAAAGGGATT+GGG + Chr3:55957265-55957284 None:intergenic 15.0%
!! AATTAACAAACAAAATTAAC+AGG + Chr3:55959599-55959618 None:intergenic 15.0%
!! AATTCTAGATAAATTAAGTA+TGG - Chr3:55957561-55957580 MsG0380014518.01.T01:intron 15.0%
!! ATTCTAGATAAATTAAGTAT+GGG - Chr3:55957562-55957581 MsG0380014518.01.T01:intron 15.0%
!!! AAGATTTGATATTATTTTCA+TGG - Chr3:55959470-55959489 MsG0380014518.01.T01:intron 15.0%
!!! CATCTGAAATAAAAATAAAA+GGG + Chr3:55957271-55957290 None:intergenic 15.0%
!!! TAATTTTGTTCTGTATAATA+TGG - Chr3:55959614-55959633 MsG0380014518.01.T01:intron 15.0%
!!! TAATTTTGTTTGATCAAAAT+TGG + Chr3:55960166-55960185 None:intergenic 15.0%
!!! TATTATTTGAGTTCATTTTA+CGG + Chr3:55957004-55957023 None:intergenic 15.0%
!! AAACAAAATTAACAGGAAAA+AGG + Chr3:55959592-55959611 None:intergenic 20.0%
!! GAAATAAAAATAAAAGGGAT+TGG + Chr3:55957266-55957285 None:intergenic 20.0%
!!! AATAATATGTTTTAAGCATC+AGG - Chr3:55958668-55958687 MsG0380014518.01.T01:intron 20.0%
!!! ATAATATGTTTTAAGCATCA+GGG - Chr3:55958669-55958688 MsG0380014518.01.T01:intron 20.0%
!!! CTTTTTTATCTGTGTTATTT+TGG + Chr3:55958534-55958553 None:intergenic 20.0%
!!! GCATCTGAAATAAAAATAAA+AGG + Chr3:55957272-55957291 None:intergenic 20.0%
!!! GGTTCATTTTTATTTATTTC+AGG + Chr3:55959817-55959836 None:intergenic 20.0%
!!! GTTTTCATATAAATGTTTGA+TGG + Chr3:55957044-55957063 None:intergenic 20.0%
!!! TATTTTTATTTCAGATGCAT+GGG - Chr3:55957274-55957293 MsG0380014518.01.T01:intron 20.0%
!!! TTATTTTTATTTCAGATGCA+TGG - Chr3:55957273-55957292 MsG0380014518.01.T01:intron 20.0%
! AAAAGTGAAGCTGTAAAAAA+TGG - Chr3:55959414-55959433 MsG0380014518.01.T01:intron 25.0%
! ACTACCTAATTAAGTCTATT+AGG + Chr3:55958812-55958831 None:intergenic 25.0%
! AGAAGAAAGATTATTGTAGT+AGG + Chr3:55958617-55958636 None:intergenic 25.0%
! ATAAAATTACAATCGGTAAG+TGG - Chr3:55958574-55958593 MsG0380014518.01.T01:intron 25.0%
! ATAGCCTAATAGACTTAATT+AGG - Chr3:55958805-55958824 MsG0380014518.01.T01:intron 25.0%
! ATGTACGTTAAACTTAGTAT+TGG + Chr3:55957536-55957555 None:intergenic 25.0%
! CCAAGTTTGATTATCAAATT+CGG + Chr3:55957837-55957856 None:intergenic 25.0%
! GTTGGAAAAAGACAATTATT+TGG + Chr3:55957920-55957939 None:intergenic 25.0%
! TAAATAATCACTTCATCAAG+TGG - Chr3:55958163-55958182 MsG0380014518.01.T01:intron 25.0%
! TAAGATCCAACATATTGATA+AGG + Chr3:55957631-55957650 None:intergenic 25.0%
! TAGACATTTATCGACAATTA+TGG - Chr3:55959723-55959742 MsG0380014518.01.T01:intron 25.0%
! TATGACAATCAAGAAAATCA+AGG - Chr3:55960388-55960407 MsG0380014518.01.T01:intron 25.0%
! TCTAATTGACAAGTTTGTAT+TGG + Chr3:55959023-55959042 None:intergenic 25.0%
! TGAAAAACAAATTGATGAGT+TGG - Chr3:55958953-55958972 MsG0380014518.01.T01:intron 25.0%
! TGATAAAGAAAAGATTGAGT+AGG - Chr3:55958446-55958465 MsG0380014518.01.T01:CDS 25.0%
! TGATTATCAAATTCGGAAAA+TGG + Chr3:55957830-55957849 None:intergenic 25.0%
! TTGACAATATGATAGATACT+AGG - Chr3:55957075-55957094 MsG0380014518.01.T01:CDS 25.0%
! TTGATTGTCATAATCTACAA+GGG + Chr3:55960380-55960399 None:intergenic 25.0%
!! CTTATGTTTTCCTAATATGA+TGG - Chr3:55958043-55958062 MsG0380014518.01.T01:intron 25.0%
!! TGATATTATTTTCATGGACA+AGG - Chr3:55959476-55959495 MsG0380014518.01.T01:intron 25.0%
!!! ATTGTTGTTTTTGTTTGTTC+AGG - Chr3:55960876-55960895 MsG0380014518.01.T01:CDS 25.0%
!!! TTGTTGTTTTTGTTTGTTCA+GGG - Chr3:55960877-55960896 MsG0380014518.01.T01:CDS 25.0%
AAATTCTTTCGATCCCTTTA+AGG + Chr3:55959262-55959281 None:intergenic 30.0%
ACATGTTGCAAACTACAAAT+TGG - Chr3:55958320-55958339 MsG0380014518.01.T01:CDS 30.0%
AGATATGTTGCGATAAACTA+AGG + Chr3:55959147-55959166 None:intergenic 30.0%
ATCAAAAGATACATCCTGAT+AGG + Chr3:55959184-55959203 None:intergenic 30.0%
CAACATATTGATAAGGTTTG+AGG + Chr3:55957624-55957643 None:intergenic 30.0%
CCTTATACTTGACATGAAAA+CGG - Chr3:55957877-55957896 MsG0380014518.01.T01:intron 30.0%
CTCAAACCTTATCAATATGT+TGG - Chr3:55957622-55957641 MsG0380014518.01.T01:intron 30.0%
CTGAATAGTAATCCTGAAAT+AGG - Chr3:55957151-55957170 MsG0380014518.01.T01:CDS 30.0%
CTTGATTGTCATAATCTACA+AGG + Chr3:55960381-55960400 None:intergenic 30.0%
GAAAAAGTAAATTGTGTGCT+AGG - Chr3:55958260-55958279 MsG0380014518.01.T01:intron 30.0%
GAAAACTATGCTCCTTAAAA+AGG - Chr3:55960307-55960326 MsG0380014518.01.T01:intron 30.0%
GAAATGTGAGAGTTTCTAAA+AGG - Chr3:55958209-55958228 MsG0380014518.01.T01:intron 30.0%
GAAGAATTCAGTATGTATCA+TGG + Chr3:55958868-55958887 None:intergenic 30.0%
GAGTACATAAAGCAAAAAGA+TGG - Chr3:55960442-55960461 MsG0380014518.01.T01:intron 30.0%
GAGTAGGAAATTAAAGACAA+AGG - Chr3:55958462-55958481 MsG0380014518.01.T01:CDS 30.0%
GATATGTTGCGATAAACTAA+GGG + Chr3:55959146-55959165 None:intergenic 30.0%
GTCGATAAATGTCTAAATCT+GGG + Chr3:55959718-55959737 None:intergenic 30.0%
TAAAGACAAAGGAAAACCTA+TGG - Chr3:55958473-55958492 MsG0380014518.01.T01:CDS 30.0%
TCGATAAATGTCTAAATCTG+GGG + Chr3:55959717-55959736 None:intergenic 30.0%
TGAAGCTGTAAAAAATGGAA+AGG - Chr3:55959419-55959438 MsG0380014518.01.T01:intron 30.0%
TGTCGATAAATGTCTAAATC+TGG + Chr3:55959719-55959738 None:intergenic 30.0%
TTATCAAATCACCATGAAGT+TGG + Chr3:55957938-55957957 None:intergenic 30.0%
! AAGATTTCCTCTCCTTTTTA+AGG + Chr3:55960322-55960341 None:intergenic 30.0%
! AAGTTTTCATAACCTGACTT+AGG - Chr3:55960056-55960075 MsG0380014518.01.T01:intron 30.0%
! ACTAGTTTATACTACCTGAA+AGG + Chr3:55960127-55960146 None:intergenic 30.0%
! ATCAGGATGTATCTTTTGAT+CGG - Chr3:55959184-55959203 MsG0380014518.01.T01:intron 30.0%
! ATTGTCTTTTTCCAACTTCA+TGG - Chr3:55957924-55957943 MsG0380014518.01.T01:intron 30.0%
! CCGAATTTGATAATCAAACT+TGG - Chr3:55957834-55957853 MsG0380014518.01.T01:intron 30.0%
! CGTTTTCATGTCAAGTATAA+GGG + Chr3:55957879-55957898 None:intergenic 30.0%
! TAAATGTTTGATGGTTAGAG+TGG + Chr3:55957035-55957054 None:intergenic 30.0%
!! TTTTTGTTTGTTCAGGGATT+GGG - Chr3:55960883-55960902 MsG0380014518.01.T01:CDS 30.0%
!!! GATTTTAGTCTTGTTATTGC+CGG + Chr3:55960001-55960020 None:intergenic 30.0%
AAAATCAAGGATGCAATGGT+GGG - Chr3:55960401-55960420 MsG0380014518.01.T01:intron 35.0%
AAATTTATGTGCTGCACCAT+AGG + Chr3:55958492-55958511 None:intergenic 35.0%
AATGCATCTTGATCGTTAGT+TGG + Chr3:55960674-55960693 None:intergenic 35.0%
ACAAAACTCATTCATGATGC+AGG - Chr3:55960607-55960626 MsG0380014518.01.T01:intron 35.0%
ACAGATTGGATGCAAATCTA+AGG - Chr3:55957589-55957608 MsG0380014518.01.T01:intron 35.0%
AGAAGATGAGTTTGATGTTC+TGG + Chr3:55957657-55957676 None:intergenic 35.0%
AGACACATGACAACCATAAA+TGG - Chr3:55959040-55959059 MsG0380014518.01.T01:intron 35.0%
AGCAATGATACAAGACTTTC+CGG - Chr3:55959979-55959998 MsG0380014518.01.T01:intron 35.0%
AGGAAAAAGAGTTGAAGAGA+AGG - Chr3:55958229-55958248 MsG0380014518.01.T01:intron 35.0%
ATCCATCATTTGCAGTGTAA+GGG + Chr3:55960489-55960508 None:intergenic 35.0%
ATTCTTCTCATGTTGCCATT+CGG - Chr3:55958881-55958900 MsG0380014518.01.T01:intron 35.0%
ATTTGTCTCCATGAGTTAGA+GGG + Chr3:55958359-55958378 None:intergenic 35.0%
CAAGAAAATCAAGGATGCAA+TGG - Chr3:55960397-55960416 MsG0380014518.01.T01:intron 35.0%
CATTGAGTAGCAAAAGAAGT+TGG - Chr3:55957320-55957339 MsG0380014518.01.T01:intron 35.0%
CTCAGACAACAAGAACTAAA+AGG + Chr3:55959905-55959924 None:intergenic 35.0%
TATCCATGTGCCATCATATT+AGG + Chr3:55958056-55958075 None:intergenic 35.0%
TATCGCAACATATCTTCAGA+TGG - Chr3:55959152-55959171 MsG0380014518.01.T01:intron 35.0%
TATGATTATGTACACGTCAG+TGG - Chr3:55957390-55957409 MsG0380014518.01.T01:intron 35.0%
TATGCACATACACCTATTTC+AGG + Chr3:55957166-55957185 None:intergenic 35.0%
TCAAGCGAATTAGATGACTA+TGG + Chr3:55958301-55958320 None:intergenic 35.0%
TCGACAAGCATAGATTTGAA+TGG - Chr3:55959689-55959708 MsG0380014518.01.T01:intron 35.0%
TCTGTATAATATGGAAGACC+TGG - Chr3:55959623-55959642 MsG0380014518.01.T01:intron 35.0%
TGATTACCTCATAGTAGAAC+TGG + Chr3:55960754-55960773 None:intergenic 35.0%
TGATTTCCAGTTCTACTATG+AGG - Chr3:55960745-55960764 MsG0380014518.01.T01:intron 35.0%
TGTATCATGGTATGATGCTT+CGG + Chr3:55958855-55958874 None:intergenic 35.0%
TTCGACTAGACTGAAATTTG+TGG + Chr3:55957749-55957768 None:intergenic 35.0%
TTTCCTAATATGATGGCACA+TGG - Chr3:55958050-55958069 MsG0380014518.01.T01:intron 35.0%
! ACCACGTCATCTCTAATTTT+GGG - Chr3:55957991-55958010 MsG0380014518.01.T01:intron 35.0%
! CACAAAACGATTGACTCATA+AGG + Chr3:55957716-55957735 None:intergenic 35.0%
! CCGTTTTCATGTCAAGTATA+AGG + Chr3:55957880-55957899 None:intergenic 35.0%
! TAAGTATGGGTGTTACAGAT+TGG - Chr3:55957575-55957594 MsG0380014518.01.T01:intron 35.0%
! TGACAACAGTTTAGAATCCA+TGG + Chr3:55960551-55960570 None:intergenic 35.0%
! TTTTGACCATCATCAAATGC+TGG + Chr3:55959290-55959309 None:intergenic 35.0%
!! AAGAGAAATCCAGTGGATTT+TGG + Chr3:55960271-55960290 None:intergenic 35.0%
!! ATATGTTTTAAGCATCAGGG+TGG - Chr3:55958672-55958691 MsG0380014518.01.T01:intron 35.0%
!! CTTGTCGATACTTTAAAGCA+GGG + Chr3:55959677-55959696 None:intergenic 35.0%
!! GCATTTGATGATGGTCAAAA+CGG - Chr3:55959290-55959309 MsG0380014518.01.T01:intron 35.0%
!! GTTTTTGTTTGTTCAGGGAT+TGG - Chr3:55960882-55960901 MsG0380014518.01.T01:CDS 35.0%
!! TATGTTTTAAGCATCAGGGT+GGG - Chr3:55958673-55958692 MsG0380014518.01.T01:intron 35.0%
!! TGAGTTGGTTACAAATGATC+TGG - Chr3:55958968-55958987 MsG0380014518.01.T01:intron 35.0%
!! TGTGTTTTTGTGTTTTTCGC+CGG - Chr3:55960785-55960804 MsG0380014518.01.T01:intron 35.0%
!! TTTGTTGTTACTTGCTTTGC+AGG + Chr3:55959753-55959772 None:intergenic 35.0%
!!! CGGTGTTACATTATGTTTTG+AGG - Chr3:55959310-55959329 MsG0380014518.01.T01:intron 35.0%
!!! TTTTGATCGGTCGTTTTTCA+GGG - Chr3:55959197-55959216 MsG0380014518.01.T01:intron 35.0%
AAAGGATGCTACACTCACAA+AGG + Chr3:55960109-55960128 None:intergenic 40.0%
AAATCACACACCCAAGAGAA+TGG - Chr3:55959082-55959101 MsG0380014518.01.T01:intron 40.0%
AAGGAAATGCCTGTCATGAA+TGG - Chr3:55959495-55959514 MsG0380014518.01.T01:intron 40.0%
AATCACACACCCAAGAGAAT+GGG - Chr3:55959083-55959102 MsG0380014518.01.T01:intron 40.0%
ACATTATTCGCGATTCGCAT+TGG + Chr3:55958923-55958942 None:intergenic 40.0%
ACTTCATCAAGTGGATGAAG+AGG - Chr3:55958172-55958191 MsG0380014518.01.T01:intron 40.0%
AGGAAATGCCTGTCATGAAT+GGG - Chr3:55959496-55959515 MsG0380014518.01.T01:intron 40.0%
ATCGAAGAAAGAGGAAGAAG+AGG - Chr3:55958409-55958428 MsG0380014518.01.T01:CDS 40.0%
ATCGATGAACCGAGACAATT+CGG - Chr3:55958381-55958400 MsG0380014518.01.T01:CDS 40.0%
CATTTGTCTCCATGAGTTAG+AGG + Chr3:55958360-55958379 None:intergenic 40.0%
CGTAATGTTCCCATTCTCTT+GGG + Chr3:55959095-55959114 None:intergenic 40.0%
CGTTAGTTGGAACAATCTCA+TGG + Chr3:55960661-55960680 None:intergenic 40.0%
CTATGCTCCTTAAAAAGGAG+AGG - Chr3:55960312-55960331 MsG0380014518.01.T01:intron 40.0%
CTTGTTCGAATGATTCATCG+AGG - Chr3:55959369-55959388 MsG0380014518.01.T01:intron 40.0%
GAAAATCAAGGATGCAATGG+TGG - Chr3:55960400-55960419 MsG0380014518.01.T01:intron 40.0%
GAAAATTCCCCTCTAACTCA+TGG - Chr3:55958348-55958367 MsG0380014518.01.T01:CDS 40.0%
GATCCATCATTTGCAGTGTA+AGG + Chr3:55960490-55960509 None:intergenic 40.0%
GCTGTAGATATTCATTGCAG+TGG - Chr3:55959444-55959463 MsG0380014518.01.T01:intron 40.0%
GGTGTGAGTATAAGAAGAGT+AGG - Chr3:55959858-55959877 MsG0380014518.01.T01:intron 40.0%
TAATATGGAAGACCTGGTTC+AGG - Chr3:55959629-55959648 MsG0380014518.01.T01:intron 40.0%
TACCCTTACACTGCAAATGA+TGG - Chr3:55960484-55960503 MsG0380014518.01.T01:intron 40.0%
TAGAATCCATGGTATCACCT+TGG + Chr3:55960540-55960559 None:intergenic 40.0%
TAGACACCAGCATTTGATGA+TGG - Chr3:55959281-55959300 MsG0380014518.01.T01:intron 40.0%
TAGGTGTATGTGCATACAGA+TGG - Chr3:55957170-55957189 MsG0380014518.01.T01:intron 40.0%
TCTAGCAAAGAGAAATCCAG+TGG + Chr3:55960278-55960297 None:intergenic 40.0%
TCTTCATCATGTGCAGTCTA+AGG - Chr3:55957674-55957693 MsG0380014518.01.T01:intron 40.0%
TTAATAGCTACACCTGAACC+AGG + Chr3:55959644-55959663 None:intergenic 40.0%
TTAGCGATCAGAGGAAATCT+AGG + Chr3:55957120-55957139 None:intergenic 40.0%
TTCTTCTCATGTTGCCATTC+GGG - Chr3:55958882-55958901 MsG0380014518.01.T01:intron 40.0%
TTTGTCTCCATGAGTTAGAG+GGG + Chr3:55958358-55958377 None:intergenic 40.0%
! CACCACGTCATCTCTAATTT+TGG - Chr3:55957990-55958009 MsG0380014518.01.T01:intron 40.0%
! CCTCAGATAGGAATTTTCAC+CGG - Chr3:55956936-55956955 MsG0380014518.01.T01:intron 40.0%
! CGATTGACTCATAAGGTTTG+AGG + Chr3:55957709-55957728 None:intergenic 40.0%
! GCAACTTCCTTTTGATGAAG+AGG - Chr3:55959224-55959243 MsG0380014518.01.T01:intron 40.0%
! TGTCTGAGACGTTGAAAGAT+TGG - Chr3:55959917-55959936 MsG0380014518.01.T01:intron 40.0%
! TTCATTTTACGGCATGCATC+AGG + Chr3:55956993-55957012 None:intergenic 40.0%
!! ACCTTGGATGGGTTAAAATC+CGG + Chr3:55960524-55960543 None:intergenic 40.0%
!! ATGTTTTAAGCATCAGGGTG+GGG - Chr3:55958674-55958693 MsG0380014518.01.T01:intron 40.0%
!! GCTTGTCGATACTTTAAAGC+AGG + Chr3:55959678-55959697 None:intergenic 40.0%
!! TTTCGATCCCTTTAAGGTGT+TGG + Chr3:55959256-55959275 None:intergenic 40.0%
!!! CTTTTGATCGGTCGTTTTTC+AGG - Chr3:55959196-55959215 MsG0380014518.01.T01:intron 40.0%
AAATTGTGTGCTAGGCACAG+AGG - Chr3:55958268-55958287 MsG0380014518.01.T01:intron 45.0%
ACATCTATGGCTACGGAAAC+AGG + Chr3:55960716-55960735 None:intergenic 45.0%
ACCTCAATCCCATTCATGAC+AGG + Chr3:55959507-55959526 None:intergenic 45.0%
ACGTGGTAAAAGTTCCCGAA+TGG + Chr3:55958899-55958918 None:intergenic 45.0%
ATCAGATCCTCCGACATCTA+TGG + Chr3:55960729-55960748 None:intergenic 45.0%
ATCCATGGTATCACCTTGGA+TGG + Chr3:55960536-55960555 None:intergenic 45.0%
ATGGACCGCACAATGATAAG+AGG - Chr3:55956900-55956919 MsG0380014518.01.T01:intron 45.0%
CATCTATGGCTACGGAAACA+GGG + Chr3:55960715-55960734 None:intergenic 45.0%
CCACTGACGTGTACATACAT+AGG + Chr3:55957436-55957455 None:intergenic 45.0%
CCGACGAAATGAAACACAAC+CGG + Chr3:55960807-55960826 None:intergenic 45.0%
CCGGTGAAAATTCCTATCTG+AGG + Chr3:55956939-55956958 None:intergenic 45.0%
CCGGTTGTGTTTCATTTCGT+CGG - Chr3:55960804-55960823 MsG0380014518.01.T01:intron 45.0%
CCTATGTATGTACACGTCAG+TGG - Chr3:55957433-55957452 MsG0380014518.01.T01:intron 45.0%
CCTTGAACACCAAAATCCAC+TGG - Chr3:55960259-55960278 MsG0380014518.01.T01:intron 45.0%
CGAGGTCTATTGAAAAGAGC+TGG - Chr3:55959387-55959406 MsG0380014518.01.T01:intron 45.0%
CGATCTTCACCGAATTGTCT+CGG + Chr3:55958393-55958412 None:intergenic 45.0%
CTGCAAAAACAAAAGCCCGT+CGG + Chr3:55960847-55960866 None:intergenic 45.0%
GATAACTCGATGCCTAAGTC+AGG + Chr3:55960071-55960090 None:intergenic 45.0%
GATCCAGCCTCTTCATCAAA+AGG + Chr3:55959234-55959253 None:intergenic 45.0%
GATGGATCATGTGATGCATC+CGG - Chr3:55960502-55960521 MsG0380014518.01.T01:intron 45.0%
GCACAATGATAAGAGGAGTC+CGG - Chr3:55956907-55956926 MsG0380014518.01.T01:intron 45.0%
GCCCAAAATTAGAGATGACG+TGG + Chr3:55957995-55958014 None:intergenic 45.0%
GCGTAATGTTCCCATTCTCT+TGG + Chr3:55959096-55959115 None:intergenic 45.0%
GCTGGATCCAACACCTTAAA+GGG - Chr3:55959246-55959265 MsG0380014518.01.T01:intron 45.0%
GGACTCCTCTTATCATTGTG+CGG + Chr3:55956908-55956927 None:intergenic 45.0%
GGCGATCAATTGACACAGTT+GGG + Chr3:55960640-55960659 None:intergenic 45.0%
GTTTCCGTAGCCATAGATGT+CGG - Chr3:55960716-55960735 MsG0380014518.01.T01:intron 45.0%
TAAGAAGAGTAGGAGCGAAG+AGG - Chr3:55959868-55959887 MsG0380014518.01.T01:intron 45.0%
TAGTTCAGTGCCAACAGACT+GGG - Chr3:55957790-55957809 MsG0380014518.01.T01:intron 45.0%
TCAGATGGCACAAACCTATC+AGG - Chr3:55959167-55959186 MsG0380014518.01.T01:intron 45.0%
TCCATGGTATCACCTTGGAT+GGG + Chr3:55960535-55960554 None:intergenic 45.0%
TCGGTGAAGATCGAAGAAAG+AGG - Chr3:55958400-55958419 MsG0380014518.01.T01:CDS 45.0%
TGAGAAGCTAACTCTGCTGT+TGG - Chr3:55959837-55959856 MsG0380014518.01.T01:intron 45.0%
TGCATACAGATGGCGATCAT+AGG - Chr3:55957180-55957199 MsG0380014518.01.T01:intron 45.0%
TGGCGATCAATTGACACAGT+TGG + Chr3:55960641-55960660 None:intergenic 45.0%
TGTGAGTGTAGCATCCTTTC+AGG - Chr3:55960110-55960129 MsG0380014518.01.T01:intron 45.0%
TTAGTTCAGTGCCAACAGAC+TGG - Chr3:55957789-55957808 MsG0380014518.01.T01:intron 45.0%
TTGTTTGTTCAGGGATTGGG+TGG - Chr3:55960886-55960905 MsG0380014518.01.T01:CDS 45.0%
! AACAGCAGAGTTAGCTTCTC+AGG + Chr3:55959838-55959857 None:intergenic 45.0%
! ATTTTACGGCATGCATCAGG+TGG + Chr3:55956990-55957009 None:intergenic 45.0%
! CTTCCTTTTGATGAAGAGGC+TGG - Chr3:55959228-55959247 MsG0380014518.01.T01:intron 45.0%
! GAATTTTCACCGGTCAGTAG+TGG - Chr3:55956946-55956965 MsG0380014518.01.T01:intron 45.0%
! TTCCTATCTGAGGCTAACAC+CGG + Chr3:55956929-55956948 None:intergenic 45.0%
! TTTAGACCGGTGACCTTTTG+CGG - Chr3:55960910-55960929 MsG0380014518.01.T01:CDS 45.0%
!! TCCGGATTTTAACCCATCCA+AGG - Chr3:55960520-55960539 MsG0380014518.01.T01:intron 45.0%
!!! CCAGTGGATTTTGGTGTTCA+AGG + Chr3:55960262-55960281 None:intergenic 45.0%
AATTGCCTGCAGCCTAGGAT+AGG - Chr3:55957211-55957230 MsG0380014518.01.T01:intron 50.0%
ACCCATCCAAGGTGATACCA+TGG - Chr3:55960531-55960550 MsG0380014518.01.T01:intron 50.0%
AGCCACATACCACTACTGAC+CGG + Chr3:55956958-55956977 None:intergenic 50.0%
AGTTCAGTGCCAACAGACTG+GGG - Chr3:55957791-55957810 MsG0380014518.01.T01:intron 50.0%
CAGTGAGTTCCACCTATCCT+AGG + Chr3:55957226-55957245 None:intergenic 50.0%
CGGGACACTTTCTGTAAGGA+TGG - Chr3:55956881-55956900 MsG0380014518.01.T01:CDS 50.0%
CTGCATAGCTTAGCGATCAG+AGG + Chr3:55957129-55957148 None:intergenic 50.0%
GCCTGTCATGAATGGGATTG+AGG - Chr3:55959503-55959522 MsG0380014518.01.T01:intron 50.0%
GGAACGGGACACTTTCTGTA+AGG - Chr3:55956877-55956896 MsG0380014518.01.T01:CDS 50.0%
GGCTGGATCCAACACCTTAA+AGG - Chr3:55959245-55959264 MsG0380014518.01.T01:intron 50.0%
GTCAGTAGTGGTATGTGGCT+GGG - Chr3:55956958-55956977 MsG0380014518.01.T01:intron 50.0%
TATGGCTACGGAAACAGGGT+TGG + Chr3:55960711-55960730 None:intergenic 50.0%
TCAGTAGTGGTATGTGGCTG+GGG - Chr3:55956959-55956978 MsG0380014518.01.T01:intron 50.0%
TCCTCCGACATCTATGGCTA+CGG + Chr3:55960723-55960742 None:intergenic 50.0%
! GGGATTGGGTGGATTTAGAC+CGG - Chr3:55960897-55960916 MsG0380014518.01.T01:CDS 50.0%
!! AGGATGCAATGGTGGGCTAA+TGG - Chr3:55960408-55960427 MsG0380014518.01.T01:intron 50.0%
!! CGATACTTTAAAGCAGGGCG+TGG + Chr3:55959672-55959691 None:intergenic 50.0%
!!! CGACGGGCTTTTGTTTTTGC+AGG - Chr3:55960845-55960864 MsG0380014518.01.T01:intron 50.0%
CACCGGTCAGTAGTGGTATG+TGG - Chr3:55956953-55956972 MsG0380014518.01.T01:intron 55.0%
CATCCACCGCAAAAGGTCAC+CGG + Chr3:55960919-55960938 None:intergenic 55.0%
CTCGAAATTGCCTGCAGCCT+AGG - Chr3:55957206-55957225 MsG0380014518.01.T01:intron 55.0%
GCATCAGGGTGGGGATAATG+TGG - Chr3:55958683-55958702 MsG0380014518.01.T01:intron 55.0%
GGTCAGTAGTGGTATGTGGC+TGG - Chr3:55956957-55956976 MsG0380014518.01.T01:intron 55.0%
TCCGTAGCCATAGATGTCGG+AGG - Chr3:55960719-55960738 MsG0380014518.01.T01:intron 55.0%
TTCCACCTATCCTAGGCTGC+AGG + Chr3:55957219-55957238 None:intergenic 55.0%
! GTCCGGTGTTAGCCTCAGAT+AGG - Chr3:55956924-55956943 MsG0380014518.01.T01:intron 55.0%
! TGCATGGGTTGCTCGCAAGT+AGG - Chr3:55957289-55957308 MsG0380014518.01.T01:intron 55.0%
!! CAGAAAGTGTCCCGTTCCAC+TGG + Chr3:55956875-55956894 None:intergenic 55.0%
CAGTGCCAACAGACTGGGGA+GGG - Chr3:55957795-55957814 MsG0380014518.01.T01:intron 60.0%
TCAGTGCCAACAGACTGGGG+AGG - Chr3:55957794-55957813 MsG0380014518.01.T01:intron 60.0%
TGCCTGCAGCCTAGGATAGG+TGG - Chr3:55957214-55957233 MsG0380014518.01.T01:intron 60.0%
TGCTACCCTCCCCAGTCTGT+TGG + Chr3:55957803-55957822 None:intergenic 60.0%
! AGACCGGTGACCTTTTGCGG+TGG - Chr3:55960913-55960932 MsG0380014518.01.T01:CDS 60.0%
! TCGCGATTCGCATTGGCACG+TGG + Chr3:55958916-55958935 None:intergenic 60.0%
! TGCCGTCTGTTTGCTGCCGA+CGG - Chr3:55960828-55960847 MsG0380014518.01.T01:intron 60.0%
GCCCGTCGGCAGCAAACAGA+CGG + Chr3:55960833-55960852 None:intergenic 65.0%
! GCCGTCTGTTTGCTGCCGAC+GGG - Chr3:55960829-55960848 MsG0380014518.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55956869 55960939 55956869 ID=MsG0380014518.01;Name=MsG0380014518.01
Chr3 mRNA 55956869 55960939 55956869 ID=MsG0380014518.01.T01;Parent=MsG0380014518.01;Name=MsG0380014518.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.5|1|1|4|0|191
Chr3 exon 55960851 55960939 55960851 ID=MsG0380014518.01.T01:exon:28822;Parent=MsG0380014518.01.T01
Chr3 exon 55958284 55958590 55958284 ID=MsG0380014518.01.T01:exon:28821;Parent=MsG0380014518.01.T01
Chr3 exon 55957042 55957179 55957042 ID=MsG0380014518.01.T01:exon:28820;Parent=MsG0380014518.01.T01
Chr3 exon 55956869 55956910 55956869 ID=MsG0380014518.01.T01:exon:28819;Parent=MsG0380014518.01.T01
Chr3 CDS 55960851 55960939 55960851 ID=MsG0380014518.01.T01:cds;Parent=MsG0380014518.01.T01
Chr3 CDS 55958284 55958590 55958284 ID=MsG0380014518.01.T01:cds;Parent=MsG0380014518.01.T01
Chr3 CDS 55957042 55957179 55957042 ID=MsG0380014518.01.T01:cds;Parent=MsG0380014518.01.T01
Chr3 CDS 55956869 55956910 55956869 ID=MsG0380014518.01.T01:cds;Parent=MsG0380014518.01.T01
Gene Sequence

>MsG0380014518.01.T01

ATGCCAGTGGAACGGGACACTTTCTGTAAGGATGGACCGCACAATGATAAGAGGAGTCCGGTGTTAGCCTCAGATAGGAATTTTCACCGGGTTAAGCAACTTCCTTTTGATGAAGAGGCTGGATCCAACACCTTAAAGGGATCGAAAGAATTTAGACACCAGCATTTGATGATGGTCAAAACGGTGTTACATTATGTTTTGAGGCACGAATTAACAGCACTTACTGTAGATGATGATAAGCTTGTTCGAATGATTCATCGAGGTCTATTGAAAAGAGCTGGTGTGAAAAGTGAAGCTGTAAAAAATGGAAAGGAAGCTGTAGATATTCATTGCAGTGGTCAAAGATTTGATATTATTTTCATGGACAAGGAAATGCCTGTCATGAATGGGATTGAGGAAGATGTCCCAACTGTGTCAATTGATCGCCATGAGATTGTTCCAACTAACGATCAAGATGCATTGCTTAATGTTGTTGCCAACCCTGTTTCCGTAGCCATAGATGTCGGAGGATCTGATTTCCAGTTCTACTATGAGGGATTGGGTGGATTTAGACCGGTGACCTTTTGCGGTGGATGA
Protein sequence

>MsG0380014518.01.T01

MPVERDTFCKDGPHNDKRSPVLASDRNFHRVKQLPFDEEAGSNTLKGSKEFRHQHLMMVKTVLHYVLRHELTALTVDDDKLVRMIHRGLLKRAGVKSEAVKNGKEAVDIHCSGQRFDIIFMDKEMPVMNGIEEDVPTVSIDRHEIVPTNDQDALLNVVANPVSVAIDVGGSDFQFYYEGLGGFRPVTFCGG*