Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014611.01.T01 | XP_024634637.2 | 81.882 | 287 | 51 | 1 | 1 | 286 | 1 | 287 | 2.76E-172 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014611.01.T01 | Q8L3W1 | 36.364 | 110 | 68 | 1 | 12 | 119 | 6 | 115 | 7.50E-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014611.01.T01 | A0A1S2Y6J0 | 71.329 | 286 | 80 | 2 | 1 | 286 | 1 | 284 | 7.65e-146 | 420 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380014611.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014611.01.T01 | MTR_3g061350 | 72.535 | 284 | 76 | 2 | 1 | 282 | 1 | 284 | 2.04e-148 | 417 |
| MsG0380014611.01.T01 | MTR_3g061310 | 72.982 | 285 | 74 | 2 | 1 | 282 | 1 | 285 | 6.83e-148 | 416 |
| MsG0380014611.01.T01 | MTR_3g061340 | 75.177 | 282 | 60 | 3 | 1 | 281 | 1 | 273 | 1.68e-147 | 414 |
| MsG0380014611.01.T01 | MTR_3g061370 | 72.183 | 284 | 74 | 3 | 1 | 282 | 1 | 281 | 4.57e-145 | 409 |
| MsG0380014611.01.T01 | MTR_3g061320 | 72.085 | 283 | 74 | 3 | 1 | 282 | 1 | 279 | 2.65e-144 | 407 |
| MsG0380014611.01.T01 | MTR_3g061330 | 71.315 | 251 | 70 | 2 | 1 | 249 | 1 | 251 | 1.79e-127 | 363 |
| MsG0380014611.01.T01 | MTR_3g061290 | 77.778 | 162 | 35 | 1 | 1 | 161 | 1 | 162 | 2.93e-89 | 264 |
| MsG0380014611.01.T01 | MTR_3g061300 | 88.889 | 126 | 14 | 0 | 161 | 286 | 2 | 127 | 4.58e-77 | 230 |
| MsG0380014611.01.T01 | MTR_3g061220 | 83.077 | 130 | 9 | 1 | 1 | 130 | 1 | 117 | 3.18e-71 | 215 |
| MsG0380014611.01.T01 | MTR_1g035460 | 35.836 | 293 | 146 | 9 | 26 | 283 | 2 | 287 | 1.45e-48 | 166 |
| MsG0380014611.01.T01 | MTR_8g103940 | 33.861 | 316 | 158 | 8 | 4 | 283 | 31 | 331 | 1.49e-48 | 168 |
| MsG0380014611.01.T01 | MTR_8g103940 | 36.752 | 117 | 64 | 4 | 173 | 283 | 383 | 495 | 1.35e-15 | 77.0 |
| MsG0380014611.01.T01 | MTR_1g108780 | 34.333 | 300 | 145 | 10 | 21 | 285 | 10 | 292 | 4.23e-45 | 158 |
| MsG0380014611.01.T01 | MTR_1g108780 | 34.711 | 121 | 68 | 4 | 173 | 286 | 345 | 461 | 6.26e-12 | 65.9 |
| MsG0380014611.01.T01 | MTR_7g050710 | 33.110 | 299 | 175 | 10 | 9 | 283 | 10 | 307 | 8.15e-41 | 144 |
| MsG0380014611.01.T01 | MTR_7g050560 | 34.589 | 292 | 163 | 8 | 9 | 283 | 10 | 290 | 2.72e-38 | 137 |
| MsG0380014611.01.T01 | MTR_5g044670 | 29.470 | 302 | 173 | 11 | 12 | 285 | 16 | 305 | 3.20e-37 | 135 |
| MsG0380014611.01.T01 | MTR_3g098790 | 31.615 | 291 | 182 | 9 | 9 | 283 | 10 | 299 | 5.63e-34 | 126 |
| MsG0380014611.01.T01 | MTR_1g035640 | 30.142 | 282 | 179 | 6 | 12 | 284 | 9 | 281 | 1.59e-33 | 127 |
| MsG0380014611.01.T01 | MTR_7g050720 | 30.351 | 313 | 176 | 10 | 9 | 283 | 7 | 315 | 7.30e-31 | 117 |
| MsG0380014611.01.T01 | MTR_7g050580 | 31.930 | 285 | 180 | 7 | 9 | 283 | 10 | 290 | 8.52e-31 | 117 |
| MsG0380014611.01.T01 | MTR_4g119990 | 29.967 | 307 | 173 | 11 | 10 | 282 | 13 | 311 | 1.60e-28 | 112 |
| MsG0380014611.01.T01 | MTR_7g050590 | 29.617 | 287 | 165 | 10 | 26 | 283 | 2 | 280 | 4.04e-26 | 104 |
| MsG0380014611.01.T01 | MTR_1g035570 | 27.113 | 284 | 192 | 5 | 12 | 284 | 9 | 288 | 3.77e-25 | 103 |
| MsG0380014611.01.T01 | MTR_3g005480 | 29.391 | 279 | 153 | 9 | 11 | 283 | 20 | 260 | 4.18e-25 | 101 |
| MsG0380014611.01.T01 | MTR_6g043890 | 26.596 | 282 | 182 | 8 | 10 | 269 | 13 | 291 | 2.48e-23 | 97.8 |
| MsG0380014611.01.T01 | MTR_3g005490 | 27.682 | 289 | 144 | 9 | 12 | 284 | 21 | 260 | 2.52e-23 | 96.7 |
| MsG0380014611.01.T01 | MTR_3g005420 | 26.871 | 294 | 171 | 7 | 1 | 284 | 278 | 537 | 3.23e-23 | 99.4 |
| MsG0380014611.01.T01 | MTR_3g005420 | 26.909 | 275 | 136 | 8 | 12 | 276 | 40 | 259 | 2.09e-16 | 79.3 |
| MsG0380014611.01.T01 | MTR_5g070440 | 27.240 | 279 | 167 | 8 | 12 | 284 | 21 | 269 | 1.23e-22 | 94.7 |
| MsG0380014611.01.T01 | MTR_1g035510 | 30.357 | 224 | 138 | 7 | 26 | 234 | 2 | 222 | 3.37e-21 | 89.7 |
| MsG0380014611.01.T01 | MTR_6g061070 | 27.419 | 310 | 180 | 11 | 8 | 281 | 20 | 320 | 5.52e-21 | 92.8 |
| MsG0380014611.01.T01 | MTR_3g005495 | 29.617 | 287 | 138 | 9 | 4 | 276 | 231 | 467 | 2.16e-20 | 90.9 |
| MsG0380014611.01.T01 | MTR_3g005495 | 41.667 | 84 | 49 | 0 | 25 | 108 | 28 | 111 | 8.51e-16 | 77.4 |
| MsG0380014611.01.T01 | MTR_3g005460 | 25.763 | 295 | 177 | 7 | 1 | 282 | 251 | 516 | 5.73e-20 | 89.7 |
| MsG0380014611.01.T01 | MTR_3g005460 | 40.404 | 99 | 57 | 1 | 12 | 108 | 25 | 123 | 1.42e-16 | 79.7 |
| MsG0380014611.01.T01 | MTR_1g035440 | 44.231 | 104 | 55 | 2 | 8 | 108 | 11 | 114 | 4.01e-19 | 84.7 |
| MsG0380014611.01.T01 | MTR_1g035650 | 40.385 | 104 | 58 | 2 | 9 | 110 | 6 | 107 | 1.08e-18 | 82.8 |
| MsG0380014611.01.T01 | MTR_1g050845 | 25.952 | 289 | 175 | 8 | 9 | 284 | 6 | 268 | 1.12e-18 | 86.3 |
| MsG0380014611.01.T01 | MTR_1g034240 | 33.577 | 137 | 78 | 3 | 12 | 136 | 7 | 142 | 2.02e-18 | 85.1 |
| MsG0380014611.01.T01 | MTR_4g068320 | 32.117 | 137 | 82 | 2 | 12 | 137 | 6 | 142 | 2.06e-18 | 85.1 |
| MsG0380014611.01.T01 | MTR_1g035620 | 24.483 | 290 | 190 | 7 | 9 | 284 | 6 | 280 | 6.60e-18 | 83.6 |
| MsG0380014611.01.T01 | MTR_7g050640 | 40.625 | 96 | 55 | 1 | 10 | 103 | 11 | 106 | 2.07e-17 | 76.6 |
| MsG0380014611.01.T01 | MTR_1g021360 | 24.407 | 295 | 203 | 8 | 10 | 286 | 182 | 474 | 6.45e-17 | 80.9 |
| MsG0380014611.01.T01 | MTR_3g005420 | 26.909 | 275 | 136 | 8 | 12 | 276 | 21 | 240 | 1.52e-16 | 79.7 |
| MsG0380014611.01.T01 | MTR_1g033740 | 28.947 | 190 | 112 | 6 | 10 | 195 | 20 | 190 | 1.70e-16 | 76.3 |
| MsG0380014611.01.T01 | MTR_3g005440 | 37.500 | 96 | 60 | 0 | 13 | 108 | 23 | 118 | 4.01e-16 | 78.2 |
| MsG0380014611.01.T01 | MTR_3g005440 | 40.230 | 87 | 52 | 0 | 22 | 108 | 254 | 340 | 2.08e-14 | 73.2 |
| MsG0380014611.01.T01 | MTR_1g035520 | 39.831 | 118 | 65 | 4 | 4 | 120 | 67 | 179 | 1.24e-15 | 76.6 |
| MsG0380014611.01.T01 | MTR_1g035480 | 32.624 | 141 | 83 | 5 | 2 | 133 | 7 | 144 | 1.44e-15 | 73.6 |
| MsG0380014611.01.T01 | MTR_1g035470 | 33.333 | 138 | 83 | 3 | 26 | 157 | 2 | 136 | 5.57e-15 | 70.9 |
| MsG0380014611.01.T01 | MTR_1g034210 | 32.353 | 136 | 79 | 4 | 12 | 136 | 7 | 140 | 1.03e-13 | 70.5 |
| MsG0380014611.01.T01 | MTR_1g034210 | 32.353 | 136 | 79 | 4 | 12 | 136 | 7 | 140 | 1.25e-13 | 70.9 |
| MsG0380014611.01.T01 | MTR_1g035500 | 32.624 | 141 | 83 | 5 | 2 | 133 | 15 | 152 | 1.49e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014611.01.T01 | AT3G18990 | 36.364 | 110 | 68 | 1 | 12 | 119 | 6 | 115 | 7.65e-18 | 82.8 |
| MsG0380014611.01.T01 | AT3G18990 | 30.303 | 132 | 76 | 5 | 160 | 283 | 213 | 336 | 1.99e-11 | 63.9 |
| MsG0380014611.01.T01 | AT3G18990 | 36.364 | 110 | 68 | 1 | 12 | 119 | 6 | 115 | 1.30e-17 | 82.4 |
| MsG0380014611.01.T01 | AT3G18990 | 30.303 | 132 | 76 | 5 | 160 | 283 | 213 | 336 | 2.53e-11 | 63.9 |
| MsG0380014611.01.T01 | AT1G49475 | 35.833 | 120 | 74 | 2 | 11 | 128 | 33 | 151 | 2.27e-17 | 78.6 |
| MsG0380014611.01.T01 | AT4G01580 | 32.117 | 137 | 86 | 3 | 11 | 145 | 29 | 160 | 1.22e-16 | 76.6 |
| MsG0380014611.01.T01 | AT4G33280 | 23.762 | 303 | 200 | 10 | 10 | 285 | 23 | 321 | 2.15e-15 | 75.5 |
| MsG0380014611.01.T01 | AT3G18960 | 36.000 | 100 | 62 | 1 | 11 | 108 | 29 | 128 | 5.31e-15 | 72.4 |
| MsG0380014611.01.T01 | AT3G18960 | 36.000 | 100 | 62 | 1 | 11 | 108 | 29 | 128 | 6.49e-15 | 72.4 |
| MsG0380014611.01.T01 | AT3G18960 | 38.095 | 84 | 52 | 0 | 25 | 108 | 8 | 91 | 1.59e-12 | 65.1 |
| MsG0380014611.01.T01 | AT1G49480 | 30.769 | 130 | 74 | 5 | 162 | 283 | 100 | 221 | 2.47e-12 | 65.5 |
| MsG0380014611.01.T01 | AT1G49480 | 30.769 | 130 | 74 | 5 | 162 | 283 | 100 | 221 | 2.47e-12 | 65.5 |
| MsG0380014611.01.T01 | AT1G49480 | 30.769 | 130 | 74 | 5 | 162 | 283 | 100 | 221 | 2.47e-12 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTCCTTGTAAACTTATT+TGG | 0.150133 | 3:-57185665 | None:intergenic |
| TAATGAATCACTTGAGATTT+TGG | 0.173823 | 3:+57185958 | MsG0380014611.01.T01:CDS |
| TCCACTTTCACTTGCAAATA+AGG | 0.174829 | 3:-57186624 | None:intergenic |
| GCACTAAATGGAAAGTTTAT+TGG | 0.240506 | 3:+57185732 | MsG0380014611.01.T01:CDS |
| CAGTATGTACCAGCTTTAAA+TGG | 0.241111 | 3:+57186485 | MsG0380014611.01.T01:intron |
| CGACCACATAAGAAAGTTAA+AGG | 0.255678 | 3:+57186034 | MsG0380014611.01.T01:CDS |
| AGGCTCCTGATGGCACTAAA+TGG | 0.303104 | 3:+57185720 | MsG0380014611.01.T01:CDS |
| AGAAAATCAATGGTGAGATT+TGG | 0.311173 | 3:+57185756 | MsG0380014611.01.T01:CDS |
| AATCTATTTCTAGTGCATTC+TGG | 0.312600 | 3:-57185886 | None:intergenic |
| TGTGACCCTTATGATGATAA+AGG | 0.328005 | 3:+57185917 | MsG0380014611.01.T01:CDS |
| CTCTCTAGGACATGGGTGTT+TGG | 0.346409 | 3:+57185814 | MsG0380014611.01.T01:CDS |
| TTTCGAGTACTCTTCTGATT+TGG | 0.361974 | 3:-57185989 | None:intergenic |
| ACATTCCCTTTATCATCATA+AGG | 0.367605 | 3:-57185923 | None:intergenic |
| ACTTATAAACAAGAAAGATT+TGG | 0.379481 | 3:+57186676 | MsG0380014611.01.T01:CDS |
| CCACTTTCACTTGCAAATAA+GGG | 0.393272 | 3:-57186623 | None:intergenic |
| AAGTGAAAGTGGACTGCAAC+CGG | 0.397253 | 3:+57186634 | MsG0380014611.01.T01:CDS |
| TTGGTAATGTTCAAATATAA+AGG | 0.407584 | 3:+57185833 | MsG0380014611.01.T01:CDS |
| TCCTGAGCTCTAGCTCCCTT+TGG | 0.408256 | 3:-57186274 | None:intergenic |
| AGTATGTCATGTTGCAGATT+GGG | 0.410102 | 3:+57186528 | MsG0380014611.01.T01:CDS |
| CTACTCATCTAGTAGAAAAT+CGG | 0.415404 | 3:+57186350 | MsG0380014611.01.T01:CDS |
| AGTATGTACCAGCTTTAAAT+GGG | 0.425891 | 3:+57186486 | MsG0380014611.01.T01:intron |
| GAAGAACTACATCATGGAAT+TGG | 0.429478 | 3:+57186251 | MsG0380014611.01.T01:CDS |
| TGTGGTCGAGGATAAAATAA+TGG | 0.434350 | 3:-57186019 | None:intergenic |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3:+57185771 | MsG0380014611.01.T01:CDS |
| CATTCCCTTTATCATCATAA+GGG | 0.438531 | 3:-57185922 | None:intergenic |
| TTTACTGAAAATTACTCTCT+AGG | 0.440048 | 3:+57185800 | MsG0380014611.01.T01:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3:-57185725 | None:intergenic |
| AATGGTCGCCGCCTTTCGGC+CGG | 0.442339 | 3:+57186596 | MsG0380014611.01.T01:CDS |
| ATACCTTTAACTTTCTTATG+TGG | 0.443654 | 3:-57186037 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3:+57185766 | MsG0380014611.01.T01:CDS |
| GAAGAATAATCTTGAAGAAA+CGG | 0.454080 | 3:-57185290 | None:intergenic |
| CCCTTATTTGCAAGTGAAAG+TGG | 0.457209 | 3:+57186623 | MsG0380014611.01.T01:CDS |
| GTGACCCTTATGATGATAAA+GGG | 0.462847 | 3:+57185918 | MsG0380014611.01.T01:CDS |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3:+57185765 | MsG0380014611.01.T01:CDS |
| AAGTATGTCATGTTGCAGAT+TGG | 0.493738 | 3:+57186527 | MsG0380014611.01.T01:CDS |
| TTCTTCAAACTAATCTTCAA+AGG | 0.500110 | 3:+57185307 | MsG0380014611.01.T01:CDS |
| TTAACTTTCTTATGTGGTCG+AGG | 0.501785 | 3:-57186031 | None:intergenic |
| TGCAGATTGGGAAAAGATCA+TGG | 0.514999 | 3:+57186540 | MsG0380014611.01.T01:CDS |
| GTTTATTGGAAGAAAATCAA+TGG | 0.517633 | 3:+57185746 | MsG0380014611.01.T01:CDS |
| GTCAAATCCAGTGTTGATCA+AGG | 0.523444 | 3:+57185700 | MsG0380014611.01.T01:CDS |
| TCAATAACCCCATTTAAAGC+TGG | 0.523790 | 3:-57186494 | None:intergenic |
| AATAATCTTGAAGAAACGGA+TGG | 0.540502 | 3:-57185286 | None:intergenic |
| ACATCATGGAATTGGCCAAA+GGG | 0.541191 | 3:+57186259 | MsG0380014611.01.T01:CDS |
| ATGGTCGCCGCCTTTCGGCC+GGG | 0.543493 | 3:+57186597 | MsG0380014611.01.T01:CDS |
| GCCAAAGGGAGCTAGAGCTC+AGG | 0.549833 | 3:+57186273 | MsG0380014611.01.T01:CDS |
| ATAAGGGCCACCCGGCCGAA+AGG | 0.554116 | 3:-57186607 | None:intergenic |
| TCAGGAGCCTTGATCAACAC+TGG | 0.571427 | 3:-57185707 | None:intergenic |
| AAATACCAAATAAGTTTACA+AGG | 0.573284 | 3:+57185660 | MsG0380014611.01.T01:CDS |
| TCAAAGACACAAACATCTCC+CGG | 0.574986 | 3:-57186653 | None:intergenic |
| ATAATCTTGAAGAAACGGAT+GGG | 0.575151 | 3:-57185285 | None:intergenic |
| AAACTACATCATCCATGGCT+AGG | 0.576343 | 3:+57185247 | None:intergenic |
| CTTGAAGAAACGGATGGGGA+GGG | 0.581283 | 3:-57185280 | None:intergenic |
| AGGGCCACCCGGCCGAAAGG+CGG | 0.581670 | 3:-57186604 | None:intergenic |
| AAAATTGCTGCCTTGTTGCG+AGG | 0.586776 | 3:+57186568 | MsG0380014611.01.T01:CDS |
| GAAAATTACTCTCTAGGACA+TGG | 0.586964 | 3:+57185806 | MsG0380014611.01.T01:CDS |
| TCTTGAAGAAACGGATGGGG+AGG | 0.587791 | 3:-57185281 | None:intergenic |
| GGTAGCATTTCTCCTAGCCA+TGG | 0.591389 | 3:-57185259 | None:intergenic |
| AAAATTACTCTCTAGGACAT+GGG | 0.591995 | 3:+57185807 | MsG0380014611.01.T01:CDS |
| AGTGAAAGTGGACTGCAACC+GGG | 0.600057 | 3:+57186635 | MsG0380014611.01.T01:CDS |
| ACTTGCAAATAAGGGCCACC+CGG | 0.602205 | 3:-57186615 | None:intergenic |
| CTAGTGGAAGAACTACATCA+TGG | 0.603212 | 3:+57186245 | MsG0380014611.01.T01:CDS |
| TACATCATGGAATTGGCCAA+AGG | 0.610272 | 3:+57186258 | MsG0380014611.01.T01:CDS |
| TTTACAAGGAGACATGAAGT+TGG | 0.611434 | 3:+57185674 | MsG0380014611.01.T01:CDS |
| GTGTTGATCAAGGCTCCTGA+TGG | 0.612633 | 3:+57185710 | MsG0380014611.01.T01:CDS |
| TAATCTTGAAGAAACGGATG+GGG | 0.621796 | 3:-57185284 | None:intergenic |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3:+57185767 | MsG0380014611.01.T01:CDS |
| GTCGCCGCCTTTCGGCCGGG+TGG | 0.644521 | 3:+57186600 | MsG0380014611.01.T01:CDS |
| TCATCTAGTAGAAAATCGGA+TGG | 0.665001 | 3:+57186354 | MsG0380014611.01.T01:CDS |
| GTATGTACCAGCTTTAAATG+GGG | 0.686003 | 3:+57186487 | MsG0380014611.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATATAGCATGT+TGG | - | Chr3:57185358-57185377 | None:intergenic | 15.0% |
| !! | AAATACCAAATAAGTTTACA+AGG | + | Chr3:57185660-57185679 | MsG0380014611.01.T01:CDS | 20.0% |
| !! | ACTTATAAACAAGAAAGATT+TGG | + | Chr3:57186676-57186695 | MsG0380014611.01.T01:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | Chr3:57186328-57186347 | None:intergenic | 20.0% |
| !!! | ATGTTTTCAGGTTATTTTTT+TGG | - | Chr3:57186124-57186143 | None:intergenic | 20.0% |
| !!! | TGTTTTCAGGTTATTTTTTT+GGG | - | Chr3:57186123-57186142 | None:intergenic | 20.0% |
| !!! | TTGGTAATGTTCAAATATAA+AGG | + | Chr3:57185833-57185852 | MsG0380014611.01.T01:CDS | 20.0% |
| ! | AACACAGAAGAAATTATTCA+AGG | - | Chr3:57186181-57186200 | None:intergenic | 25.0% |
| ! | AAGCACTAGAAATTTGATTA+GGG | + | Chr3:57185412-57185431 | MsG0380014611.01.T01:intron | 25.0% |
| ! | CTACACAAATATATATATGC+AGG | + | Chr3:57186208-57186227 | MsG0380014611.01.T01:intron | 25.0% |
| ! | GAAGAATAATCTTGAAGAAA+CGG | - | Chr3:57185293-57185312 | None:intergenic | 25.0% |
| ! | GTTTATTGGAAGAAAATCAA+TGG | + | Chr3:57185746-57185765 | MsG0380014611.01.T01:CDS | 25.0% |
| ! | TTCTTCAAACTAATCTTCAA+AGG | + | Chr3:57185307-57185326 | MsG0380014611.01.T01:CDS | 25.0% |
| ! | TTGAATAATTTCTTCTGTGT+TGG | + | Chr3:57186180-57186199 | MsG0380014611.01.T01:intron | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+AGG | + | Chr3:57185800-57185819 | MsG0380014611.01.T01:CDS | 25.0% |
| !! | ATACCTTTAACTTTCTTATG+TGG | - | Chr3:57186040-57186059 | None:intergenic | 25.0% |
| !! | GATTAGTTGAAAATTCGTTA+TGG | + | Chr3:57185485-57185504 | MsG0380014611.01.T01:intron | 25.0% |
| !! | TAATGAATCACTTGAGATTT+TGG | + | Chr3:57185958-57185977 | MsG0380014611.01.T01:CDS | 25.0% |
| !!! | ATGAGTGTTGTATTTTTAGA+AGG | + | Chr3:57185566-57185585 | MsG0380014611.01.T01:intron | 25.0% |
| AAGAGATCAGTTTAAACTTC+AGG | - | Chr3:57186088-57186107 | None:intergenic | 30.0% | |
| AATAATCTTGAAGAAACGGA+TGG | - | Chr3:57185289-57185308 | None:intergenic | 30.0% | |
| ACATTCCCTTTATCATCATA+AGG | - | Chr3:57185926-57185945 | None:intergenic | 30.0% | |
| AGAAAATCAATGGTGAGATT+TGG | + | Chr3:57185756-57185775 | MsG0380014611.01.T01:CDS | 30.0% | |
| AGAGATCAGTTTAAACTTCA+GGG | - | Chr3:57186087-57186106 | None:intergenic | 30.0% | |
| AGCATGTTGGAAATCTAAAT+AGG | - | Chr3:57185345-57185364 | None:intergenic | 30.0% | |
| ATAATCTTGAAGAAACGGAT+GGG | - | Chr3:57185288-57185307 | None:intergenic | 30.0% | |
| CAAGCACTAGAAATTTGATT+AGG | + | Chr3:57185411-57185430 | MsG0380014611.01.T01:intron | 30.0% | |
| CATTCCCTTTATCATCATAA+GGG | - | Chr3:57185925-57185944 | None:intergenic | 30.0% | |
| CTACTCATCTAGTAGAAAAT+CGG | + | Chr3:57186350-57186369 | MsG0380014611.01.T01:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | Chr3:57185732-57185751 | MsG0380014611.01.T01:CDS | 30.0% | |
| TGTCTCCTTGTAAACTTATT+TGG | - | Chr3:57185668-57185687 | None:intergenic | 30.0% | |
| ! | GATTTTCTACTAGATGAGTA+GGG | - | Chr3:57186351-57186370 | None:intergenic | 30.0% |
| ! | TCATGATGCTTAATGTTTTC+AGG | - | Chr3:57186136-57186155 | None:intergenic | 30.0% |
| !! | AAAATTACTCTCTAGGACAT+GGG | + | Chr3:57185807-57185826 | MsG0380014611.01.T01:CDS | 30.0% |
| !! | AATCTATTTCTAGTGCATTC+TGG | - | Chr3:57185889-57185908 | None:intergenic | 30.0% |
| !! | AGTATGTACCAGCTTTAAAT+GGG | + | Chr3:57186486-57186505 | MsG0380014611.01.T01:intron | 30.0% |
| !!! | AACTGTCACTTTTGTAGATA+TGG | - | Chr3:57186712-57186731 | None:intergenic | 30.0% |
| AAGTATGTCATGTTGCAGAT+TGG | + | Chr3:57186527-57186546 | MsG0380014611.01.T01:CDS | 35.0% | |
| AGTATGTCATGTTGCAGATT+GGG | + | Chr3:57186528-57186547 | MsG0380014611.01.T01:CDS | 35.0% | |
| CCACTTTCACTTGCAAATAA+GGG | - | Chr3:57186626-57186645 | None:intergenic | 35.0% | |
| CGACCACATAAGAAAGTTAA+AGG | + | Chr3:57186034-57186053 | MsG0380014611.01.T01:CDS | 35.0% | |
| GAAGAACTACATCATGGAAT+TGG | + | Chr3:57186251-57186270 | MsG0380014611.01.T01:CDS | 35.0% | |
| GGTGACATTAAAAAGACTAG+TGG | + | Chr3:57186229-57186248 | MsG0380014611.01.T01:intron | 35.0% | |
| GTGACCCTTATGATGATAAA+GGG | + | Chr3:57185918-57185937 | MsG0380014611.01.T01:CDS | 35.0% | |
| TAATCTTGAAGAAACGGATG+GGG | - | Chr3:57185287-57185306 | None:intergenic | 35.0% | |
| TAGGGATCTGTTAGAATTAG+TGG | + | Chr3:57185430-57185449 | MsG0380014611.01.T01:intron | 35.0% | |
| TCATCTAGTAGAAAATCGGA+TGG | + | Chr3:57186354-57186373 | MsG0380014611.01.T01:CDS | 35.0% | |
| TCCACTTTCACTTGCAAATA+AGG | - | Chr3:57186627-57186646 | None:intergenic | 35.0% | |
| TGTGACCCTTATGATGATAA+AGG | + | Chr3:57185917-57185936 | MsG0380014611.01.T01:CDS | 35.0% | |
| TGTGGTCGAGGATAAAATAA+TGG | - | Chr3:57186022-57186041 | None:intergenic | 35.0% | |
| TTAACTTTCTTATGTGGTCG+AGG | - | Chr3:57186034-57186053 | None:intergenic | 35.0% | |
| TTTACAAGGAGACATGAAGT+TGG | + | Chr3:57185674-57185693 | MsG0380014611.01.T01:CDS | 35.0% | |
| ! | CACTTGAGATTTTGGATGAA+TGG | + | Chr3:57185966-57185985 | MsG0380014611.01.T01:CDS | 35.0% |
| ! | CGATTTTCTACTAGATGAGT+AGG | - | Chr3:57186352-57186371 | None:intergenic | 35.0% |
| ! | TCAATAACCCCATTTAAAGC+TGG | - | Chr3:57186497-57186516 | None:intergenic | 35.0% |
| ! | TTTCGAGTACTCTTCTGATT+TGG | - | Chr3:57185992-57186011 | None:intergenic | 35.0% |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | + | Chr3:57185765-57185784 | MsG0380014611.01.T01:CDS | 35.0% |
| !! | CAGTATGTACCAGCTTTAAA+TGG | + | Chr3:57186485-57186504 | MsG0380014611.01.T01:intron | 35.0% |
| !! | GAAAATTACTCTCTAGGACA+TGG | + | Chr3:57185806-57185825 | MsG0380014611.01.T01:CDS | 35.0% |
| !! | GTATGTACCAGCTTTAAATG+GGG | + | Chr3:57186487-57186506 | MsG0380014611.01.T01:intron | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | + | Chr3:57185766-57185785 | MsG0380014611.01.T01:CDS | 35.0% |
| ACATCATGGAATTGGCCAAA+GGG | + | Chr3:57186259-57186278 | MsG0380014611.01.T01:CDS | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | Chr3:57185728-57185747 | None:intergenic | 40.0% | |
| CTAGTGGAAGAACTACATCA+TGG | + | Chr3:57186245-57186264 | MsG0380014611.01.T01:CDS | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | Chr3:57186258-57186277 | MsG0380014611.01.T01:CDS | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | - | Chr3:57186656-57186675 | None:intergenic | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | Chr3:57186540-57186559 | MsG0380014611.01.T01:CDS | 40.0% | |
| ! | CCCTTATTTGCAAGTGAAAG+TGG | + | Chr3:57186623-57186642 | MsG0380014611.01.T01:CDS | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | + | Chr3:57185771-57185790 | MsG0380014611.01.T01:CDS | 40.0% |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | + | Chr3:57185767-57185786 | MsG0380014611.01.T01:CDS | 40.0% |
| !! | GTCAAATCCAGTGTTGATCA+AGG | + | Chr3:57185700-57185719 | MsG0380014611.01.T01:CDS | 40.0% |
| CCTTGTTGCGAGGCTAAAAA+TGG | + | Chr3:57186578-57186597 | MsG0380014611.01.T01:CDS | 45.0% | |
| TAAAAATGGTCGCCGCCTTT+CGG | + | Chr3:57186592-57186611 | MsG0380014611.01.T01:CDS | 45.0% | |
| ! | AAAATTGCTGCCTTGTTGCG+AGG | + | Chr3:57186568-57186587 | MsG0380014611.01.T01:CDS | 45.0% |
| !! | AAGTGAAAGTGGACTGCAAC+CGG | + | Chr3:57186634-57186653 | MsG0380014611.01.T01:CDS | 45.0% |
| !!! | CCATTTTTAGCCTCGCAACA+AGG | - | Chr3:57186581-57186600 | None:intergenic | 45.0% |
| ACTTGCAAATAAGGGCCACC+CGG | - | Chr3:57186618-57186637 | None:intergenic | 50.0% | |
| AGGCTCCTGATGGCACTAAA+TGG | + | Chr3:57185720-57185739 | MsG0380014611.01.T01:CDS | 50.0% | |
| CTTGAAGAAACGGATGGGGA+GGG | - | Chr3:57185283-57185302 | None:intergenic | 50.0% | |
| TCAGGAGCCTTGATCAACAC+TGG | - | Chr3:57185710-57185729 | None:intergenic | 50.0% | |
| TCTTGAAGAAACGGATGGGG+AGG | - | Chr3:57185284-57185303 | None:intergenic | 50.0% | |
| ! | GTGTTGATCAAGGCTCCTGA+TGG | + | Chr3:57185710-57185729 | MsG0380014611.01.T01:CDS | 50.0% |
| !! | AGTGAAAGTGGACTGCAACC+GGG | + | Chr3:57186635-57186654 | MsG0380014611.01.T01:CDS | 50.0% |
| !! | CTCTCTAGGACATGGGTGTT+TGG | + | Chr3:57185814-57185833 | MsG0380014611.01.T01:CDS | 50.0% |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | Chr3:57186277-57186296 | None:intergenic | 55.0% |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | Chr3:57186273-57186292 | MsG0380014611.01.T01:CDS | 60.0% | |
| AATGGTCGCCGCCTTTCGGC+CGG | + | Chr3:57186596-57186615 | MsG0380014611.01.T01:CDS | 65.0% | |
| ATAAGGGCCACCCGGCCGAA+AGG | - | Chr3:57186610-57186629 | None:intergenic | 65.0% | |
| ATGGTCGCCGCCTTTCGGCC+GGG | + | Chr3:57186597-57186616 | MsG0380014611.01.T01:CDS | 70.0% | |
| AGGGCCACCCGGCCGAAAGG+CGG | - | Chr3:57186607-57186626 | None:intergenic | 75.0% | |
| ! | GTCGCCGCCTTTCGGCCGGG+TGG | + | Chr3:57186600-57186619 | MsG0380014611.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 57185261 | 57186733 | 57185261 | ID=MsG0380014611.01;Name=MsG0380014611.01 |
| Chr3 | mRNA | 57185261 | 57186733 | 57185261 | ID=MsG0380014611.01.T01;Parent=MsG0380014611.01;Name=MsG0380014611.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|4|0|286 |
| Chr3 | exon | 57185261 | 57185332 | 57185261 | ID=MsG0380014611.01.T01:exon:16193;Parent=MsG0380014611.01.T01 |
| Chr3 | exon | 57185659 | 57186055 | 57185659 | ID=MsG0380014611.01.T01:exon:16194;Parent=MsG0380014611.01.T01 |
| Chr3 | exon | 57186230 | 57186375 | 57186230 | ID=MsG0380014611.01.T01:exon:16195;Parent=MsG0380014611.01.T01 |
| Chr3 | exon | 57186488 | 57186733 | 57186488 | ID=MsG0380014611.01.T01:exon:16196;Parent=MsG0380014611.01.T01 |
| Chr3 | CDS | 57185261 | 57185332 | 57185261 | ID=MsG0380014611.01.T01:cds;Parent=MsG0380014611.01.T01 |
| Chr3 | CDS | 57185659 | 57186055 | 57185659 | ID=MsG0380014611.01.T01:cds;Parent=MsG0380014611.01.T01 |
| Chr3 | CDS | 57186230 | 57186375 | 57186230 | ID=MsG0380014611.01.T01:cds;Parent=MsG0380014611.01.T01 |
| Chr3 | CDS | 57186488 | 57186733 | 57186488 | ID=MsG0380014611.01.T01:cds;Parent=MsG0380014611.01.T01 |
| Gene Sequence |
| Protein sequence |
