AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014641.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014641.01.T01 MTR_3g061510 88.556 367 4 1 1 367 1 329 0.0 627
MsG0380014641.01.T01 MTR_3g061510 88.556 367 4 1 1 367 21 349 0.0 626
MsG0380014641.01.T01 MTR_8g037270 39.759 249 86 7 20 264 21 209 1.29e-40 145
MsG0380014641.01.T01 MTR_2g041090 58.716 109 40 3 161 264 25 133 1.98e-35 129
MsG0380014641.01.T01 MTR_2g030170 56.731 104 40 1 182 280 81 184 4.89e-32 120
MsG0380014641.01.T01 MTR_8g019540 50.847 118 47 3 150 264 111 220 1.29e-31 122
MsG0380014641.01.T01 MTR_2g030170 59.551 89 36 0 192 280 129 217 2.14e-30 116
MsG0380014641.01.T01 MTR_2g099490 59.406 101 36 3 170 267 134 232 6.30e-30 117
MsG0380014641.01.T01 MTR_7g106450 44.242 165 71 6 165 323 131 280 2.44e-28 113
MsG0380014641.01.T01 MTR_2g099490 52.174 115 38 3 170 267 134 248 1.18e-27 111
MsG0380014641.01.T01 MTR_1g056530 44.578 166 64 6 165 323 129 273 2.88e-26 107
MsG0380014641.01.T02 MTR_3g061510 88.556 367 4 1 1 367 1 329 0.0 627
MsG0380014641.01.T02 MTR_3g061510 88.556 367 4 1 1 367 21 349 0.0 626
MsG0380014641.01.T02 MTR_8g037270 39.759 249 86 7 20 264 21 209 1.29e-40 145
MsG0380014641.01.T02 MTR_2g041090 58.716 109 40 3 161 264 25 133 1.98e-35 129
MsG0380014641.01.T02 MTR_2g030170 56.731 104 40 1 182 280 81 184 4.89e-32 120
MsG0380014641.01.T02 MTR_8g019540 50.847 118 47 3 150 264 111 220 1.29e-31 122
MsG0380014641.01.T02 MTR_2g030170 59.551 89 36 0 192 280 129 217 2.14e-30 116
MsG0380014641.01.T02 MTR_2g099490 59.406 101 36 3 170 267 134 232 6.30e-30 117
MsG0380014641.01.T02 MTR_7g106450 44.242 165 71 6 165 323 131 280 2.44e-28 113
MsG0380014641.01.T02 MTR_2g099490 52.174 115 38 3 170 267 134 248 1.18e-27 111
MsG0380014641.01.T02 MTR_1g056530 44.578 166 64 6 165 323 129 273 2.88e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014641.01.T01 AT5G12840 48.639 294 105 7 16 306 17 267 6.53e-78 241
MsG0380014641.01.T01 AT5G12840 48.639 294 105 7 16 306 17 267 6.53e-78 241
MsG0380014641.01.T01 AT5G12840 48.475 295 105 8 16 306 17 268 4.74e-76 236
MsG0380014641.01.T01 AT5G12840 48.475 295 105 8 16 306 17 268 4.74e-76 236
MsG0380014641.01.T01 AT5G12840 48.475 295 105 8 16 306 17 268 4.74e-76 236
MsG0380014641.01.T01 AT3G20910 59.903 207 54 6 165 367 122 303 4.38e-70 222
MsG0380014641.01.T01 AT2G34720 44.898 147 75 2 156 296 6 152 2.36e-32 119
MsG0380014641.01.T01 AT2G34720 44.898 147 75 2 156 296 6 152 2.36e-32 119
MsG0380014641.01.T01 AT1G30500 61.165 103 35 3 169 269 59 158 3.27e-32 120
MsG0380014641.01.T01 AT1G30500 58.654 104 40 2 169 269 59 162 3.52e-31 117
MsG0380014641.01.T01 AT1G72830 55.238 105 44 2 163 264 130 234 6.61e-31 120
MsG0380014641.01.T01 AT2G34720 47.015 134 65 2 169 296 54 187 1.52e-30 115
MsG0380014641.01.T01 AT1G72830 54.717 106 44 3 163 264 130 235 3.11e-29 115
MsG0380014641.01.T01 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T01 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T01 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T01 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T01 AT1G54160 54.082 98 39 2 168 264 141 233 5.17e-27 109
MsG0380014641.01.T01 AT3G14020 54.167 96 39 3 173 264 132 226 2.06e-26 107
MsG0380014641.01.T01 AT3G14020 54.167 96 39 3 173 264 132 226 2.06e-26 107
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 5 100 2.27e-21 90.5
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 5 100 2.27e-21 90.5
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 51 146 9.61e-21 90.1
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T01 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T01 AT3G05690 46.667 120 44 5 169 280 106 213 1.97e-20 90.9
MsG0380014641.01.T01 AT3G05690 46.667 120 44 5 169 280 143 250 2.68e-20 90.9
MsG0380014641.01.T01 AT1G72830 47.059 102 32 2 163 264 130 209 7.14e-19 86.7
MsG0380014641.01.T02 AT5G12840 48.639 294 105 7 16 306 17 267 6.53e-78 241
MsG0380014641.01.T02 AT5G12840 48.639 294 105 7 16 306 17 267 6.53e-78 241
MsG0380014641.01.T02 AT5G12840 48.475 295 105 8 16 306 17 268 4.74e-76 236
MsG0380014641.01.T02 AT5G12840 48.475 295 105 8 16 306 17 268 4.74e-76 236
MsG0380014641.01.T02 AT5G12840 48.475 295 105 8 16 306 17 268 4.74e-76 236
MsG0380014641.01.T02 AT3G20910 59.903 207 54 6 165 367 122 303 4.38e-70 222
MsG0380014641.01.T02 AT2G34720 44.898 147 75 2 156 296 6 152 2.36e-32 119
MsG0380014641.01.T02 AT2G34720 44.898 147 75 2 156 296 6 152 2.36e-32 119
MsG0380014641.01.T02 AT1G30500 61.165 103 35 3 169 269 59 158 3.27e-32 120
MsG0380014641.01.T02 AT1G30500 58.654 104 40 2 169 269 59 162 3.52e-31 117
MsG0380014641.01.T02 AT1G72830 55.238 105 44 2 163 264 130 234 6.61e-31 120
MsG0380014641.01.T02 AT2G34720 47.015 134 65 2 169 296 54 187 1.52e-30 115
MsG0380014641.01.T02 AT1G72830 54.717 106 44 3 163 264 130 235 3.11e-29 115
MsG0380014641.01.T02 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T02 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T02 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T02 AT1G17590 57.732 97 35 3 170 264 135 227 3.18e-29 115
MsG0380014641.01.T02 AT1G54160 54.082 98 39 2 168 264 141 233 5.17e-27 109
MsG0380014641.01.T02 AT3G14020 54.167 96 39 3 173 264 132 226 2.06e-26 107
MsG0380014641.01.T02 AT3G14020 54.167 96 39 3 173 264 132 226 2.06e-26 107
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 5 100 2.27e-21 90.5
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 5 100 2.27e-21 90.5
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 51 146 9.61e-21 90.1
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T02 AT5G06510 45.872 109 43 4 168 273 100 195 1.12e-20 90.9
MsG0380014641.01.T02 AT3G05690 46.667 120 44 5 169 280 106 213 1.97e-20 90.9
MsG0380014641.01.T02 AT3G05690 46.667 120 44 5 169 280 143 250 2.68e-20 90.9
MsG0380014641.01.T02 AT1G72830 47.059 102 32 2 163 264 130 209 7.14e-19 86.7

Find 75 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATATCCTAGTGATATATT+TGG 0.239472 3:-57633382 MsG0380014641.01.T01:intron
TACCAAACTCTCTTGTTTCT+TGG 0.260579 3:-57633085 MsG0380014641.01.T01:three_prime_UTR
GTGGAAGAAGGGGACTGTTC+AGG 0.315135 3:-57633509 MsG0380014641.01.T01:CDS
ACCAAACTCTCTTGTTTCTT+GGG 0.332279 3:-57633084 MsG0380014641.01.T01:three_prime_UTR
TATGCAATCTTCAAGGTATC+AGG 0.338770 3:-57633540 MsG0380014641.01.T01:CDS
ATATGCCGGCAAATCATTCT+TGG 0.341236 3:-57633323 MsG0380014641.01.T01:intron
GTAGTCAACTTCAGCTGATA+TGG 0.354835 3:-57633153 MsG0380014641.01.T01:three_prime_UTR
GTACCTTACCTTGGTTATCT+TGG 0.357252 3:-57633352 MsG0380014641.01.T01:intron
TCGCATGTTGGGAGAATTCC+AGG 0.360834 3:+57633622 None:intergenic
GCAAGAGGATCAAACGAAAA+TGG 0.361215 3:-57633593 MsG0380014641.01.T01:CDS
GCATACCATTGTTGTTGTTA+TGG 0.371144 3:+57633558 None:intergenic
ACCCAAGAAACAAGAGAGTT+TGG 0.375454 3:+57633083 None:intergenic
CTTGCATCTTGTCGCATGTT+GGG 0.394811 3:+57633611 None:intergenic
ATGGTGTGAATGATATAATA+TGG 0.403792 3:-57633283 MsG0380014641.01.T01:intron
TCGCAATCAATTAGTTCATC+TGG 0.408092 3:-57633677 MsG0380014641.01.T01:CDS
GAAAACTGATGGTGAGGCCT+CGG 0.419006 3:-57633732 MsG0380014641.01.T01:CDS
GAGGCCTCGGGAAAGGATAA+TGG 0.429841 3:-57633719 MsG0380014641.01.T01:CDS
AAAAGCCAAGAATGATTTGC+CGG 0.433683 3:+57633318 None:intergenic
GTTTGTTCTGTAAACTTGAC+TGG 0.435440 3:-57633062 MsG0380014641.01.T01:three_prime_UTR
GGGGAGAAGAATGGTGATTG+GGG 0.447626 3:-57633259 MsG0380014641.01.T01:intron
TGTCTAGATTCATGAAGATA+TGG 0.448950 3:+57633803 None:intergenic
CTTCAGACTCTGCGGAAACC+TGG 0.454407 3:-57633640 MsG0380014641.01.T01:CDS
TGGTGTGAATGATATAATAT+GGG 0.455479 3:-57633282 MsG0380014641.01.T01:intron
CCTCTGCGATGCCTCGTTCG+AGG 0.460703 3:+57633466 None:intergenic
TCTTGCATCTTGTCGCATGT+TGG 0.462937 3:+57633610 None:intergenic
TGGAAGAAGGGGACTGTTCA+GGG 0.467131 3:-57633508 MsG0380014641.01.T01:CDS
TTGAGAAGGGCAAGAGGCAC+CGG 0.467176 3:-57633770 MsG0380014641.01.T01:CDS
ATTGATTGCGACGACAAGAC+TGG 0.480972 3:+57633689 None:intergenic
GCTGATATGGATGGATGGTC+AGG 0.495169 3:-57633140 MsG0380014641.01.T01:three_prime_UTR
GTTCTGTAAACTTGACTGGT+TGG 0.495216 3:-57633058 MsG0380014641.01.T01:three_prime_UTR
TCGGGAAAGGATAATGGCTC+TGG 0.498937 3:-57633713 MsG0380014641.01.T01:CDS
CAGGGTGAAAGAGTGGAAGA+AGG 0.503255 3:-57633521 MsG0380014641.01.T01:CDS
TTTCTTTGCAAATCGTCCTC+CGG 0.509061 3:+57633751 None:intergenic
AAAACTGATGGTGAGGCCTC+GGG 0.514204 3:-57633731 MsG0380014641.01.T01:CDS
ACCATTGTTGTTGTTATGGT+AGG 0.521132 3:+57633562 None:intergenic
AGGGTGAAAGAGTGGAAGAA+GGG 0.525419 3:-57633520 MsG0380014641.01.T01:CDS
ACAATGGTATGCAATCTTCA+AGG 0.528717 3:-57633547 MsG0380014641.01.T01:CDS
TGATGGTGAGGCCTCGGGAA+AGG 0.531610 3:-57633726 MsG0380014641.01.T01:CDS
CTATCCTCCCATGCAGGAAG+GGG 0.545157 3:+57633422 None:intergenic
ATCTATCCTCCCATGCAGGA+AGG 0.546592 3:+57633420 None:intergenic
TCTATCCTCCCATGCAGGAA+GGG 0.550690 3:+57633421 None:intergenic
CAGCATCTATCCTCCCATGC+AGG 0.556616 3:+57633416 None:intergenic
GACATCAGCATGCTTTGAGA+AGG 0.559068 3:-57633784 MsG0380014641.01.T01:CDS
GGTGAATGAGTACCTTACCT+TGG 0.559324 3:-57633361 MsG0380014641.01.T01:intron
CATTCACCAAATATATCACT+AGG 0.561969 3:+57633376 None:intergenic
TATCTTGGCAATATATATGC+CGG 0.562065 3:-57633337 MsG0380014641.01.T01:intron
GGGAGGATAGATGCTGAGGT+TGG 0.566065 3:-57633409 MsG0380014641.01.T01:intron
CAGGTTTCCGCAGAGTCTGA+AGG 0.567519 3:+57633641 None:intergenic
TTGCCAAGATAACCAAGGTA+AGG 0.572885 3:+57633349 None:intergenic
AAGGTATCAGGGTGAAAGAG+TGG 0.579884 3:-57633528 MsG0380014641.01.T01:CDS
TCAACTTCAGCTGATATGGA+TGG 0.586528 3:-57633149 MsG0380014641.01.T01:three_prime_UTR
TGCAAAGAAAACTGATGGTG+AGG 0.591393 3:-57633738 MsG0380014641.01.T01:CDS
CTTCAGCTGATATGGATGGA+TGG 0.591845 3:-57633145 MsG0380014641.01.T01:three_prime_UTR
GGATCAAACGAAAATGGTGG+TGG 0.592838 3:-57633587 MsG0380014641.01.T01:CDS
GTGTGAATGATATAATATGG+GGG 0.597919 3:-57633280 MsG0380014641.01.T01:intron
ATGCAATCTTCAAGGTATCA+GGG 0.599536 3:-57633539 MsG0380014641.01.T01:CDS
CATGCTTTGAGAAGGGCAAG+AGG 0.607747 3:-57633776 MsG0380014641.01.T01:CDS
ATCCTCCCATGCAGGAAGGG+GGG 0.608555 3:+57633424 None:intergenic
TATCCTCCCATGCAGGAAGG+GGG 0.610586 3:+57633423 None:intergenic
GGTGTGAATGATATAATATG+GGG 0.614073 3:-57633281 MsG0380014641.01.T01:intron
ACATCAGCATGCTTTGAGAA+GGG 0.618856 3:-57633783 MsG0380014641.01.T01:CDS
GACTGTTCAGGGCAGCTACG+TGG 0.623934 3:-57633497 MsG0380014641.01.T01:CDS
TCCTACCATAACAACAACAA+TGG 0.624469 3:-57633563 MsG0380014641.01.T01:CDS
CGATTTGCAAAGAAAACTGA+TGG 0.624607 3:-57633743 MsG0380014641.01.T01:CDS
AGAAGGGCAAGAGGCACCGG+AGG 0.637214 3:-57633767 MsG0380014641.01.T01:CDS
TGTGAATGATATAATATGGG+GGG 0.639434 3:-57633279 MsG0380014641.01.T01:intron
GGGTGAAAGAGTGGAAGAAG+GGG 0.642943 3:-57633519 MsG0380014641.01.T01:CDS
AGAGCCATTATCCTTTCCCG+AGG 0.653284 3:+57633715 None:intergenic
TGGAAGCATCTCCTCGAACG+AGG 0.669556 3:-57633477 MsG0380014641.01.T01:CDS
GCATGGGAGGATAGATGCTG+AGG 0.673206 3:-57633413 MsG0380014641.01.T01:intron
GTGAATGATATAATATGGGG+GGG 0.684869 3:-57633278 MsG0380014641.01.T01:intron
AGAGGATCAAACGAAAATGG+TGG 0.692972 3:-57633590 MsG0380014641.01.T01:CDS
AACATGCGACAAGATGCAAG+AGG 0.706089 3:-57633608 MsG0380014641.01.T01:CDS
ATATATTGCCAAGATAACCA+AGG 0.716510 3:+57633344 None:intergenic
CCTCGAACGAGGCATCGCAG+AGG 0.718093 3:-57633466 MsG0380014641.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTACTAACAATTAAATA+GGG - Chr3:57634318-57634337 MsG0380014641.01.T01:intron 10.0%
!! TTATTTACTAACAATTAAAT+AGG - Chr3:57634317-57634336 MsG0380014641.01.T01:intron 10.0%
!!! TATAAATGTTTCTAATATAT+AGG - Chr3:57635368-57635387 MsG0380014641.01.T01:intron 10.0%
!!! TTTTACATTTTTTTTTTTGA+AGG + Chr3:57635517-57635536 None:intergenic 10.0%
!! AAAAAATAACAATAAAGCTT+AGG + Chr3:57634574-57634593 None:intergenic 15.0%
!! AAGTATATAAAAGTTAACAT+GGG - Chr3:57633829-57633848 MsG0380014641.01.T01:intron 15.0%
!! ATTTACTAACAATTAAATAG+GGG - Chr3:57634319-57634338 MsG0380014641.01.T01:intron 15.0%
!!! TATTTTTTTTTCTTCTTGAT+AGG - Chr3:57634431-57634450 MsG0380014641.01.T01:intron 15.0%
!!! TGTAGGTTTTTTTATTTTTT+GGG - Chr3:57633741-57633760 MsG0380014641.01.T01:CDS 15.0%
!!! TTGTAGGTTTTTTTATTTTT+TGG - Chr3:57633740-57633759 MsG0380014641.01.T01:CDS 15.0%
!! AATTGAAATTGAAAATTCAC+AGG + Chr3:57633063-57633082 None:intergenic 20.0%
!! ACTGCTTAAAAAAAAATCAA+AGG + Chr3:57635408-57635427 None:intergenic 20.0%
!! AGATTTACAACTCTAATATA+TGG - Chr3:57633804-57633823 MsG0380014641.01.T01:CDS 20.0%
!! ATCAAGAAAATAGAACAAAA+TGG + Chr3:57634903-57634922 None:intergenic 20.0%
!! ATTGAAATTGAAAATTCACA+GGG + Chr3:57633062-57633081 None:intergenic 20.0%
!! CAAGTATATAAAAGTTAACA+TGG - Chr3:57633828-57633847 MsG0380014641.01.T01:intron 20.0%
!! CATCTAATTTAATGTTTAGA+TGG - Chr3:57635580-57635599 MsG0380014641.01.T01:CDS 20.0%
!! TCTTGATTAATGGTAATATT+TGG - Chr3:57634916-57634935 MsG0380014641.01.T01:CDS 20.0%
!!! ACCAAATACTATTGATTTAA+AGG - Chr3:57634395-57634414 MsG0380014641.01.T01:intron 20.0%
!!! ACTATACTTGTAATTTTTGT+AGG - Chr3:57633994-57634013 MsG0380014641.01.T01:intron 20.0%
!!! CTATACTTGTAATTTTTGTA+GGG - Chr3:57633995-57634014 MsG0380014641.01.T01:intron 20.0%
!!! GGATATTTGTCTTTTTTATA+TGG - Chr3:57635201-57635220 MsG0380014641.01.T01:CDS 20.0%
!!! TCAAATCAGTAATTTTATTC+TGG - Chr3:57634643-57634662 MsG0380014641.01.T01:CDS 20.0%
!!! TGTTCTATTTTCTTGATTAA+TGG - Chr3:57634906-57634925 MsG0380014641.01.T01:CDS 20.0%
!!! TTACTACATAAACTTTTTGT+GGG - Chr3:57635761-57635780 MsG0380014641.01.T01:intron 20.0%
!!! TTTACTACATAAACTTTTTG+TGG - Chr3:57635760-57635779 MsG0380014641.01.T01:intron 20.0%
! AAAAAAAATCAAAGGCTCTA+TGG + Chr3:57635400-57635419 None:intergenic 25.0%
! AAAAAAGACAAATATCCCAA+AGG + Chr3:57635198-57635217 None:intergenic 25.0%
! AAAAGAATTGGAAGAATACT+AGG + Chr3:57634762-57634781 None:intergenic 25.0%
! AATCATAAGACTCAAAATCT+AGG - Chr3:57633097-57633116 MsG0380014641.01.T01:three_prime_UTR 25.0%
! ATCATAAGACTCAAAATCTA+GGG - Chr3:57633098-57633117 MsG0380014641.01.T01:three_prime_UTR 25.0%
! ATGGTGTGAATGATATAATA+TGG - Chr3:57636460-57636479 MsG0380014641.01.T01:intron 25.0%
! ATTCGTGCATATAATTTCAA+TGG - Chr3:57634683-57634702 MsG0380014641.01.T01:CDS 25.0%
! CAAAAATGAGAAAAGATTGA+AGG + Chr3:57636548-57636567 None:intergenic 25.0%
! CATAAGGAATAACAGAATTT+CGG + Chr3:57633483-57633502 None:intergenic 25.0%
! GCCTTTAAATCAATAGTATT+TGG + Chr3:57634399-57634418 None:intergenic 25.0%
! GTATATCCTAGTGATATATT+TGG - Chr3:57636361-57636380 MsG0380014641.01.T01:intron 25.0%
! GTCTTATGAAATTGTGTAAA+AGG + Chr3:57635244-57635263 None:intergenic 25.0%
! TGGTGTGAATGATATAATAT+GGG - Chr3:57636461-57636480 MsG0380014641.01.T01:intron 25.0%
! TTCTTCTTGATAGGAAATTA+CGG - Chr3:57634440-57634459 MsG0380014641.01.T01:intron 25.0%
! TTGAAATTGAAAATTCACAG+GGG + Chr3:57633061-57633080 None:intergenic 25.0%
! TTGTAACTCTTGATTGAATA+AGG - Chr3:57633857-57633876 MsG0380014641.01.T01:intron 25.0%
!! ATGATATTTTCCTTTCCTTT+GGG - Chr3:57635180-57635199 MsG0380014641.01.T01:CDS 25.0%
!! TATGATATTTTCCTTTCCTT+TGG - Chr3:57635179-57635198 MsG0380014641.01.T01:CDS 25.0%
!!! TGTCTTTTTTATATGGAGAA+AGG - Chr3:57635208-57635227 MsG0380014641.01.T01:CDS 25.0%
!!! TTTTGTTTCAATCGAAAAAG+AGG - Chr3:57633335-57633354 MsG0380014641.01.T01:intron 25.0%
!!! TTTTTTGGGAATATAGTTGT+AGG - Chr3:57633755-57633774 MsG0380014641.01.T01:CDS 25.0%
AAATATGACCTGAAAAGTTG+TGG - Chr3:57633525-57633544 MsG0380014641.01.T01:CDS 30.0%
ACAGAATCACATGAAACATA+AGG + Chr3:57633499-57633518 None:intergenic 30.0%
ATATATTGCCAAGATAACCA+AGG + Chr3:57636402-57636421 None:intergenic 30.0%
CATTCACCAAATATATCACT+AGG + Chr3:57636370-57636389 None:intergenic 30.0%
CTTAACAACTTGAAAGCAAT+TGG + Chr3:57634603-57634622 None:intergenic 30.0%
CTTATCAGGATCCATATTAT+GGG - Chr3:57634805-57634824 MsG0380014641.01.T01:intron 30.0%
GAAGCTCATAAAATCTAGAA+AGG - Chr3:57635128-57635147 MsG0380014641.01.T01:intron 30.0%
GATCATAATCAATTTCACTG+TGG - Chr3:57633904-57633923 MsG0380014641.01.T01:intron 30.0%
GGTGTGAATGATATAATATG+GGG - Chr3:57636462-57636481 MsG0380014641.01.T01:intron 30.0%
GTGTGAATGATATAATATGG+GGG - Chr3:57636463-57636482 MsG0380014641.01.T01:intron 30.0%
TAACAATAAAGCTTAGGCAA+AGG + Chr3:57634568-57634587 None:intergenic 30.0%
TAGGGGAAAAATAAACAGAT+TGG - Chr3:57634336-57634355 MsG0380014641.01.T01:intron 30.0%
TAGGTGAAAGGTAGAAAATT+GGG - Chr3:57633389-57633408 MsG0380014641.01.T01:intron 30.0%
TATCTTGGCAATATATATGC+CGG - Chr3:57636406-57636425 MsG0380014641.01.T01:intron 30.0%
TCCATATAAAGACTAAGCAA+CGG + Chr3:57635266-57635285 None:intergenic 30.0%
TCGTCAATACAGCATAATAA+TGG + Chr3:57635445-57635464 None:intergenic 30.0%
TGCACAAATGTCAAGAAAAA+TGG - Chr3:57635710-57635729 MsG0380014641.01.T01:CDS 30.0%
TGTCTAGATTCATGAAGATA+TGG + Chr3:57635943-57635962 None:intergenic 30.0%
TGTGAATGATATAATATGGG+GGG - Chr3:57636464-57636483 MsG0380014641.01.T01:intron 30.0%
TTATCAGGATCCATATTATG+GGG - Chr3:57634806-57634825 MsG0380014641.01.T01:intron 30.0%
TTGATGCTTATTAGGGATTA+GGG - Chr3:57633200-57633219 MsG0380014641.01.T01:intron 30.0%
TTTGATGCTTATTAGGGATT+AGG - Chr3:57633199-57633218 MsG0380014641.01.T01:intron 30.0%
! CCAGTTTTCTTTTAGCATAA+GGG - Chr3:57633954-57633973 MsG0380014641.01.T01:intron 30.0%
! TTAATCTGTTACTTGCTTCA+AGG - Chr3:57634871-57634890 MsG0380014641.01.T01:intron 30.0%
! TTGTTGCTTGTTTCAAAAGT+GGG + Chr3:57635560-57635579 None:intergenic 30.0%
!! CATTTTGTACAGAGTTTTAG+TGG - Chr3:57636568-57636587 MsG0380014641.01.T01:intron 30.0%
!!! ACAACTTTTCAGGTCATATT+TGG + Chr3:57633526-57633545 None:intergenic 30.0%
!!! GTCGTTTTTGATGCTTATTA+GGG - Chr3:57633193-57633212 MsG0380014641.01.T01:intron 30.0%
AAAAATAAGCTCTCAGATGC+AGG - Chr3:57635667-57635686 MsG0380014641.01.T01:CDS 35.0%
AACAATACCAAGGAATTCTG+AGG - Chr3:57635070-57635089 MsG0380014641.01.T01:intron 35.0%
AATCACTCGGTTATAGTTGT+AGG - Chr3:57633724-57633743 MsG0380014641.01.T01:CDS 35.0%
ACAATCAAGAGAGGATGAAT+TGG + Chr3:57634161-57634180 None:intergenic 35.0%
ACAATGGTATGCAATCTTCA+AGG - Chr3:57636196-57636215 MsG0380014641.01.T01:intron 35.0%
ACTACATACACTGGCAAAAT+TGG + Chr3:57635794-57635813 None:intergenic 35.0%
AGACAAATATCCCAAAGGAA+AGG + Chr3:57635193-57635212 None:intergenic 35.0%
AGATTAACGTCACATACCAA+CGG + Chr3:57634858-57634877 None:intergenic 35.0%
ATGAATGTGACTACATACAC+TGG + Chr3:57635803-57635822 None:intergenic 35.0%
ATGACAATGCAATCACAGAA+TGG + Chr3:57633275-57633294 None:intergenic 35.0%
ATGTGCTACAAATCCTTATC+AGG - Chr3:57634791-57634810 MsG0380014641.01.T01:intron 35.0%
ATTGGATTCTGAATCACCAT+TGG + Chr3:57634185-57634204 None:intergenic 35.0%
CCATAATATGGATCCTGATA+AGG + Chr3:57634807-57634826 None:intergenic 35.0%
CCCTTATGCTAAAAGAAAAC+TGG + Chr3:57633957-57633976 None:intergenic 35.0%
CCTTATCAGGATCCATATTA+TGG - Chr3:57634804-57634823 MsG0380014641.01.T01:intron 35.0%
CGATTTGCAAAGAAAACTGA+TGG - Chr3:57636000-57636019 MsG0380014641.01.T01:intron 35.0%
CTACCTAAAGACGAATTGTT+TGG + Chr3:57633682-57633701 None:intergenic 35.0%
CTTCCAAACAATTCGTCTTT+AGG - Chr3:57633676-57633695 MsG0380014641.01.T01:CDS 35.0%
GGACTCATGCAAGTAAAAAA+TGG + Chr3:57635868-57635887 None:intergenic 35.0%
GTAGGTGAAAGGTAGAAAAT+TGG - Chr3:57633388-57633407 MsG0380014641.01.T01:intron 35.0%
GTCTCACTTGAAACATATTC+TGG + Chr3:57635889-57635908 None:intergenic 35.0%
GTGAATGATATAATATGGGG+GGG - Chr3:57636465-57636484 MsG0380014641.01.T01:intron 35.0%
GTTCTGTGTGAATTCTTGTT+TGG - Chr3:57633295-57633314 MsG0380014641.01.T01:intron 35.0%
GTTTGTTCTGTAAACTTGAC+TGG - Chr3:57636681-57636700 MsG0380014641.01.T01:five_prime_UTR 35.0%
TACAACTATAACCGAGTGAT+TGG + Chr3:57633725-57633744 None:intergenic 35.0%
TATCAGGATCCATATTATGG+GGG - Chr3:57634807-57634826 MsG0380014641.01.T01:intron 35.0%
TATCCTTGTCTGCAAGAATT+AGG - Chr3:57635639-57635658 MsG0380014641.01.T01:CDS 35.0%
TCCTACCATAACAACAACAA+TGG - Chr3:57636180-57636199 MsG0380014641.01.T01:intron 35.0%
TCGCAATCAATTAGTTCATC+TGG - Chr3:57636066-57636085 MsG0380014641.01.T01:intron 35.0%
TCTGTTAAACAGAGCTTCAT+AGG - Chr3:57633438-57633457 MsG0380014641.01.T01:exon 35.0%
TGATTGTGAATGTAGGTGAA+AGG - Chr3:57633377-57633396 MsG0380014641.01.T01:intron 35.0%
TGTTTAGCGTTCACATAAAC+AGG + Chr3:57635054-57635073 None:intergenic 35.0%
TTCCACCTAGAAATCAAACT+CGG - Chr3:57633650-57633669 MsG0380014641.01.T01:CDS 35.0%
TTCCTCATTCATCTCACTAT+TGG + Chr3:57634227-57634246 None:intergenic 35.0%
TTGGATTCTGAATCACCATT+GGG + Chr3:57634184-57634203 None:intergenic 35.0%
! AAAAGCCAAGAATGATTTGC+CGG + Chr3:57636428-57636447 None:intergenic 35.0%
! AAAGAGGATTTTTCTCTGAG+CGG - Chr3:57633351-57633370 MsG0380014641.01.T01:intron 35.0%
! ACCAAACTCTCTTGTTTCTT+GGG - Chr3:57636659-57636678 MsG0380014641.01.T01:five_prime_UTR 35.0%
! ACCATTGTTGTTGTTATGGT+AGG + Chr3:57636184-57636203 None:intergenic 35.0%
! ACCGTTGCTTAGTCTTTATA+TGG - Chr3:57635262-57635281 MsG0380014641.01.T01:CDS 35.0%
! ATGCAATCTTCAAGGTATCA+GGG - Chr3:57636204-57636223 MsG0380014641.01.T01:intron 35.0%
! GCATACCATTGTTGTTGTTA+TGG + Chr3:57636188-57636207 None:intergenic 35.0%
! GCCAGTTTTCTTTTAGCATA+AGG - Chr3:57633953-57633972 MsG0380014641.01.T01:intron 35.0%
! GGCTTTTGTTCTTCTGTTAA+TGG - Chr3:57636441-57636460 MsG0380014641.01.T01:intron 35.0%
! GTAATTTTTGTAGGGATCTG+AGG - Chr3:57634003-57634022 MsG0380014641.01.T01:intron 35.0%
! GTTGTTGCTTGTTTCAAAAG+TGG + Chr3:57635561-57635580 None:intergenic 35.0%
! TACCAAACTCTCTTGTTTCT+TGG - Chr3:57636658-57636677 MsG0380014641.01.T01:five_prime_UTR 35.0%
! TAGGGATATCCTCCTTTTAT+AGG - Chr3:57634982-57635001 MsG0380014641.01.T01:CDS 35.0%
! TATGCAATCTTCAAGGTATC+AGG - Chr3:57636203-57636222 MsG0380014641.01.T01:intron 35.0%
! TCTAAAGCACCTGATTGATT+GGG + Chr3:57634286-57634305 None:intergenic 35.0%
! TCTTCCAATTCTTTTGATGC+AGG - Chr3:57634767-57634786 MsG0380014641.01.T01:intron 35.0%
! TGTTACAGTTTTTGTTCCTC+CGG - Chr3:57633553-57633572 MsG0380014641.01.T01:CDS 35.0%
!! TTCTAAAGCACCTGATTGAT+TGG + Chr3:57634287-57634306 None:intergenic 35.0%
!!! CGTCGTTTTTGATGCTTATT+AGG - Chr3:57633192-57633211 MsG0380014641.01.T01:intron 35.0%
AATCACAGAATGGTTGGACT+CGG + Chr3:57633265-57633284 None:intergenic 40.0%
ACCCAAGAAACAAGAGAGTT+TGG + Chr3:57636663-57636682 None:intergenic 40.0%
AGAGCTTCATAGGTAGTGTA+CGG - Chr3:57633448-57633467 MsG0380014641.01.T01:CDS 40.0%
AGAGGATCAAACGAAAATGG+TGG - Chr3:57636153-57636172 MsG0380014641.01.T01:intron 40.0%
AGCTTGTAGTTGCATGCATT+TGG - Chr3:57634723-57634742 MsG0380014641.01.T01:CDS 40.0%
AGGTTCAGAATAAACACCAC+CGG + Chr3:57634089-57634108 None:intergenic 40.0%
ATACACTGGCAAAATTGGAG+TGG + Chr3:57635789-57635808 None:intergenic 40.0%
ATATGCCGGCAAATCATTCT+TGG - Chr3:57636420-57636439 MsG0380014641.01.T01:intron 40.0%
ATGCTTCGATTCTCTCTTCT+CGG - Chr3:57633149-57633168 MsG0380014641.01.T01:three_prime_UTR 40.0%
CAATGCAATCACAGAATGGT+TGG + Chr3:57633271-57633290 None:intergenic 40.0%
CATGCCTGCATCAAAAGAAT+TGG + Chr3:57634774-57634793 None:intergenic 40.0%
GATTCAGAATCCAATGAGGA+AGG - Chr3:57634190-57634209 MsG0380014641.01.T01:intron 40.0%
GCAAGAGGATCAAACGAAAA+TGG - Chr3:57636150-57636169 MsG0380014641.01.T01:intron 40.0%
GCTGATAGGTAAGTAAAGTC+TGG - Chr3:57633610-57633629 MsG0380014641.01.T01:CDS 40.0%
GGAAATTACGGACAAGAACA+AGG - Chr3:57634452-57634471 MsG0380014641.01.T01:intron 40.0%
GTACCTTACCTTGGTTATCT+TGG - Chr3:57636391-57636410 MsG0380014641.01.T01:intron 40.0%
GTAGTCAACTTCAGCTGATA+TGG - Chr3:57636590-57636609 MsG0380014641.01.T01:intron 40.0%
GTCCAATAGTGAGATGAATG+AGG - Chr3:57634222-57634241 MsG0380014641.01.T01:intron 40.0%
GTGAACGCTAAACAATACCA+AGG - Chr3:57635060-57635079 MsG0380014641.01.T01:intron 40.0%
GTGGTGTTTATTCTGAACCT+TGG - Chr3:57634089-57634108 MsG0380014641.01.T01:intron 40.0%
GTGTTTATTCTGAACCTTGG+TGG - Chr3:57634092-57634111 MsG0380014641.01.T01:intron 40.0%
GTTCTGTAAACTTGACTGGT+TGG - Chr3:57636685-57636704 MsG0380014641.01.T01:five_prime_UTR 40.0%
TATATGCGCTGTTGTCTGTA+AGG - Chr3:57635339-57635358 MsG0380014641.01.T01:intron 40.0%
TCAACTTCAGCTGATATGGA+TGG - Chr3:57636594-57636613 MsG0380014641.01.T01:intron 40.0%
TCCACCTAGAAATCAAACTC+GGG - Chr3:57633651-57633670 MsG0380014641.01.T01:CDS 40.0%
TCTCACTATTGGACAAAGAC+TGG + Chr3:57634216-57634235 None:intergenic 40.0%
TGGTGATTCAGAATCCAATG+AGG - Chr3:57634186-57634205 MsG0380014641.01.T01:intron 40.0%
TGTTTAGATGGATCTGCTGT+TGG - Chr3:57635592-57635611 MsG0380014641.01.T01:CDS 40.0%
TTGCCAAGATAACCAAGGTA+AGG + Chr3:57636397-57636416 None:intergenic 40.0%
TTTCTTTGCAAATCGTCCTC+CGG + Chr3:57635995-57636014 None:intergenic 40.0%
! ACACTATGCCACAACTTTTC+AGG + Chr3:57633536-57633555 None:intergenic 40.0%
! AGAACCCGAGTTTGATTTCT+AGG + Chr3:57633658-57633677 None:intergenic 40.0%
! AGGGTTTTCGTGCTGAATTT+TGG - Chr3:57633219-57633238 MsG0380014641.01.T01:intron 40.0%
! GGGTTTTCGTGCTGAATTTT+GGG - Chr3:57633220-57633239 MsG0380014641.01.T01:intron 40.0%
! TGATTTGCAGTTTCCGACTT+GGG + Chr3:57634037-57634056 None:intergenic 40.0%
! TGCAAAGAAAACTGATGGTG+AGG - Chr3:57636005-57636024 MsG0380014641.01.T01:intron 40.0%
! TTTTTGTTCCTCCGGTTCTT+AGG - Chr3:57633561-57633580 MsG0380014641.01.T01:CDS 40.0%
!! ACATCAGCATGCTTTGAGAA+GGG - Chr3:57635960-57635979 MsG0380014641.01.T01:intron 40.0%
!! CTGTGGATTACTGCATTTTG+TGG - Chr3:57633921-57633940 MsG0380014641.01.T01:intron 40.0%
!! TTGATTTGCAGTTTCCGACT+TGG + Chr3:57634038-57634057 None:intergenic 40.0%
!!! GCGGTTTTGATTGTGAATGT+AGG - Chr3:57633370-57633389 MsG0380014641.01.T01:intron 40.0%
!!! GGTTCTTTTTTCCTTTCCTC+AGG - Chr3:57633119-57633138 MsG0380014641.01.T01:three_prime_UTR 40.0%
AACATGCGACAAGATGCAAG+AGG - Chr3:57636135-57636154 MsG0380014641.01.T01:intron 45.0%
AAGGAATGAGGATCTGACCT+CGG + Chr3:57634061-57634080 None:intergenic 45.0%
ACCATTGGGACAATCAAGAG+AGG + Chr3:57634170-57634189 None:intergenic 45.0%
AGAGAGAATCGAAGCATGCA+CGG + Chr3:57633146-57633165 None:intergenic 45.0%
AGGGTGAAAGAGTGGAAGAA+GGG - Chr3:57636223-57636242 MsG0380014641.01.T01:intron 45.0%
AGGTTCTTGAGCCATCTCAA+GGG + Chr3:57635034-57635053 None:intergenic 45.0%
ATTGATTGCGACGACAAGAC+TGG + Chr3:57636057-57636076 None:intergenic 45.0%
CAGCCTAATTCTTGCAGACA+AGG + Chr3:57635645-57635664 None:intergenic 45.0%
CTTCAGCTGATATGGATGGA+TGG - Chr3:57636598-57636617 MsG0380014641.01.T01:intron 45.0%
CTTGCATCTTGTCGCATGTT+GGG + Chr3:57636135-57636154 None:intergenic 45.0%
GAAAAGAGGAGAGAAGAGAG+AGG - Chr3:57633019-57633038 MsG0380014641.01.T02:three_prime_UTR 45.0%
GGATCAAACGAAAATGGTGG+TGG - Chr3:57636156-57636175 MsG0380014641.01.T01:intron 45.0%
GGTGAATGAGTACCTTACCT+TGG - Chr3:57636382-57636401 MsG0380014641.01.T01:intron 45.0%
GGTTCAGAATAAACACCACC+GGG + Chr3:57634088-57634107 None:intergenic 45.0%
GTAGTTGCATGCATTTGGAC+TGG - Chr3:57634728-57634747 MsG0380014641.01.T01:CDS 45.0%
GTGCTAAAGCAGAGCTTGAA+AGG - Chr3:57635106-57635125 MsG0380014641.01.T01:intron 45.0%
TAATATGGGGGGGAGAAGAA+TGG - Chr3:57636475-57636494 MsG0380014641.01.T01:intron 45.0%
TCCTCTCTTGATTGTCCCAA+TGG - Chr3:57634166-57634185 MsG0380014641.01.T01:intron 45.0%
TCTTGCATCTTGTCGCATGT+TGG + Chr3:57636136-57636155 None:intergenic 45.0%
TGAGGATATGCAACCCAAGT+CGG - Chr3:57634021-57634040 MsG0380014641.01.T01:intron 45.0%
TTAGATGGATCTGCTGTTGG+AGG - Chr3:57635595-57635614 MsG0380014641.01.T01:CDS 45.0%
! AAGGTATCAGGGTGAAAGAG+TGG - Chr3:57636215-57636234 MsG0380014641.01.T01:intron 45.0%
! ACCCGAGTTTGATTTCTAGG+TGG + Chr3:57633655-57633674 None:intergenic 45.0%
! ACTTTTGCCTTCAGACTCTG+CGG - Chr3:57636095-57636114 MsG0380014641.01.T01:intron 45.0%
! CTGCATTTTGTGGCTGTGAT+TGG - Chr3:57633931-57633950 MsG0380014641.01.T01:intron 45.0%
! GCATGAGGCACTCCTATAAA+AGG + Chr3:57634997-57635016 None:intergenic 45.0%
! GGAAGATGATGATGCTGCTA+AGG - Chr3:57634243-57634262 MsG0380014641.01.T01:intron 45.0%
! TCCATATTATGGGGGCATGA+TGG - Chr3:57634815-57634834 MsG0380014641.01.T01:intron 45.0%
! TGAGGCACTCCTATAAAAGG+AGG + Chr3:57634994-57635013 None:intergenic 45.0%
! TGCATGCATTTGGACTGGAT+GGG - Chr3:57634733-57634752 MsG0380014641.01.T01:CDS 45.0%
! TTGCATGCATTTGGACTGGA+TGG - Chr3:57634732-57634751 MsG0380014641.01.T01:CDS 45.0%
!! GACATCAGCATGCTTTGAGA+AGG - Chr3:57635959-57635978 MsG0380014641.01.T01:intron 45.0%
!! TAGTAAAAAAAAAAAAAATA+TGG + Chr3:57634961-57634980 None:intergenic 5.0%
!!! TTTTTTTTTTTTTACTATTA+GGG - Chr3:57634964-57634983 MsG0380014641.01.T01:CDS 5.0%
!!! TTTTTTTTTTTTTTACTATT+AGG - Chr3:57634963-57634982 MsG0380014641.01.T01:CDS 5.0%
AAGCTCTCAGATGCAGGTAG+TGG - Chr3:57635673-57635692 MsG0380014641.01.T01:CDS 50.0%
AATGCCTTTGCCCCTTGAGA+TGG - Chr3:57635020-57635039 MsG0380014641.01.T01:intron 50.0%
ACCGAGTGATTGGACTCAAG+TGG + Chr3:57633715-57633734 None:intergenic 50.0%
ACTCCTCAGCTGGAACTTGT+TGG - Chr3:57634527-57634546 MsG0380014641.01.T01:intron 50.0%
AGAGCCATTATCCTTTCCCG+AGG + Chr3:57636031-57636050 None:intergenic 50.0%
ATAAACACCACCGGGCTGAA+AGG + Chr3:57634080-57634099 None:intergenic 50.0%
ATCAGCCGAACTCCAGATTG+AGG + Chr3:57633596-57633615 None:intergenic 50.0%
ATCTATCCTCCCATGCAGGA+AGG + Chr3:57636326-57636345 None:intergenic 50.0%
CAGGGTGAAAGAGTGGAAGA+AGG - Chr3:57636222-57636241 MsG0380014641.01.T01:intron 50.0%
CAGGTTCTTGAGCCATCTCA+AGG + Chr3:57635035-57635054 None:intergenic 50.0%
CCAGACATTGTTTGCGCTAC+AGG + Chr3:57634136-57634155 None:intergenic 50.0%
CCTGTAGCGCAAACAATGTC+TGG - Chr3:57634133-57634152 MsG0380014641.01.T01:intron 50.0%
CGGAAACTGCAAATCAACCG+AGG - Chr3:57634041-57634060 MsG0380014641.01.T01:intron 50.0%
GATCCTCATTCCTTTCAGCC+CGG - Chr3:57634067-57634086 MsG0380014641.01.T01:intron 50.0%
GCCACTTGAGTCCAATCACT+CGG - Chr3:57633711-57633730 MsG0380014641.01.T01:CDS 50.0%
GCCATCATGCCCCCATAATA+TGG + Chr3:57634819-57634838 None:intergenic 50.0%
GCTGATATGGATGGATGGTC+AGG - Chr3:57636603-57636622 MsG0380014641.01.T01:intron 50.0%
GGGGAGAAGAATGGTGATTG+GGG - Chr3:57636484-57636503 MsG0380014641.01.T01:intron 50.0%
GGGGGAGAAGAATGGTGATT+GGG - Chr3:57636483-57636502 MsG0380014641.01.T01:intron 50.0%
GGGTGAAAGAGTGGAAGAAG+GGG - Chr3:57636224-57636243 MsG0380014641.01.T01:intron 50.0%
GGTTCTTGAGCCATCTCAAG+GGG + Chr3:57635033-57635052 None:intergenic 50.0%
GTCTTCGCCTCAGAATTCCT+TGG + Chr3:57635080-57635099 None:intergenic 50.0%
TAACGTCACATACCAACGGC+TGG + Chr3:57634854-57634873 None:intergenic 50.0%
TCAGCCGAACTCCAGATTGA+GGG + Chr3:57633595-57633614 None:intergenic 50.0%
TCCTCCGGTTCTTAGGAGAA+GGG - Chr3:57633568-57633587 MsG0380014641.01.T01:CDS 50.0%
TCGCATGTTGGGAGAATTCC+AGG + Chr3:57636124-57636143 None:intergenic 50.0%
TCTATCCTCCCATGCAGGAA+GGG + Chr3:57636325-57636344 None:intergenic 50.0%
TGACCAACAAGTTCCAGCTG+AGG + Chr3:57634533-57634552 None:intergenic 50.0%
TGGAAGAAGGGGACTGTTCA+GGG - Chr3:57636235-57636254 MsG0380014641.01.T01:intron 50.0%
TGGAGGCTCATGGAAGTTAG+AGG - Chr3:57635612-57635631 MsG0380014641.01.T01:CDS 50.0%
TTCCTCCGGTTCTTAGGAGA+AGG - Chr3:57633567-57633586 MsG0380014641.01.T01:CDS 50.0%
! AAAACTGATGGTGAGGCCTC+GGG - Chr3:57636012-57636031 MsG0380014641.01.T01:intron 50.0%
! CAATCTGGAGTTCGGCTGAT+AGG - Chr3:57633596-57633615 MsG0380014641.01.T01:CDS 50.0%
! GAAAACTGATGGTGAGGCCT+CGG - Chr3:57636011-57636030 MsG0380014641.01.T01:intron 50.0%
! TCGGGAAAGGATAATGGCTC+TGG - Chr3:57636030-57636049 MsG0380014641.01.T01:intron 50.0%
!! CAAAGACTGGCCTTCCTCAT+TGG + Chr3:57634203-57634222 None:intergenic 50.0%
!! CATGCTTTGAGAAGGGCAAG+AGG - Chr3:57635967-57635986 MsG0380014641.01.T01:intron 50.0%
!! TATTCTGAACCTTGGTGGCG+TGG - Chr3:57634097-57634116 MsG0380014641.01.T01:intron 50.0%
AGCTTATCCTCACCAGCCGT+TGG - Chr3:57634839-57634858 MsG0380014641.01.T01:intron 55.0%
CAGAATGGTTGGACTCGGAC+TGG + Chr3:57633260-57633279 None:intergenic 55.0%
CAGCATCTATCCTCCCATGC+AGG + Chr3:57636330-57636349 None:intergenic 55.0%
CAGGTTTCCGCAGAGTCTGA+AGG + Chr3:57636105-57636124 None:intergenic 55.0%
CCTCCGGTTCTTAGGAGAAG+GGG - Chr3:57633569-57633588 MsG0380014641.01.T01:CDS 55.0%
CCTGATTGATTGGGAGCAGC+AGG + Chr3:57634277-57634296 None:intergenic 55.0%
CCTGCTGCTCCCAATCAATC+AGG - Chr3:57634274-57634293 MsG0380014641.01.T01:intron 55.0%
CTATCCTCCCATGCAGGAAG+GGG + Chr3:57636324-57636343 None:intergenic 55.0%
CTTCAGACTCTGCGGAAACC+TGG - Chr3:57636103-57636122 MsG0380014641.01.T01:intron 55.0%
GAGGCCTCGGGAAAGGATAA+TGG - Chr3:57636024-57636043 MsG0380014641.01.T01:intron 55.0%
GATCTGCTGTTGGAGGCTCA+TGG - Chr3:57635602-57635621 MsG0380014641.01.T01:CDS 55.0%
GCATGGGAGGATAGATGCTG+AGG - Chr3:57636330-57636349 MsG0380014641.01.T01:intron 55.0%
GGGAGGATAGATGCTGAGGT+TGG - Chr3:57636334-57636353 MsG0380014641.01.T01:intron 55.0%
GGGGGGAGAAGAATGGTGAT+TGG - Chr3:57636482-57636501 MsG0380014641.01.T01:intron 55.0%
GTGGAAGAAGGGGACTGTTC+AGG - Chr3:57636234-57636253 MsG0380014641.01.T01:intron 55.0%
TATCCAACACCACGCCACCA+AGG + Chr3:57634109-57634128 None:intergenic 55.0%
TATCCTCCCATGCAGGAAGG+GGG + Chr3:57636323-57636342 None:intergenic 55.0%
TCACATACCAACGGCTGGTG+AGG + Chr3:57634849-57634868 None:intergenic 55.0%
TGAGCCATCTCAAGGGGCAA+AGG + Chr3:57635027-57635046 None:intergenic 55.0%
! TTGAGAAGGGCAAGAGGCAC+CGG - Chr3:57635973-57635992 MsG0380014641.01.T01:intron 55.0%
!! CTCAAGGGGCAAAGGCATTC+TGG + Chr3:57635019-57635038 None:intergenic 55.0%
!! GGCAAAGGCATTCTGGCATG+AGG + Chr3:57635012-57635031 None:intergenic 55.0%
!! TGGAAGCATCTCCTCGAACG+AGG - Chr3:57636266-57636285 MsG0380014641.01.T01:intron 55.0%
AGGAGAAGGGGCCCTCAATC+TGG - Chr3:57633581-57633600 MsG0380014641.01.T01:CDS 60.0%
AGTAGACCCCCCTTCCTGCA+TGG - Chr3:57636313-57636332 MsG0380014641.01.T01:intron 60.0%
ATCCTCCCATGCAGGAAGGG+GGG + Chr3:57636322-57636341 None:intergenic 60.0%
CCACCGGGCTGAAAGGAATG+AGG + Chr3:57634073-57634092 None:intergenic 60.0%
CCAGCTGAGGAGTCTGTGTG+AGG + Chr3:57634520-57634539 None:intergenic 60.0%
CCCCTTCTCCTAAGAACCGG+AGG + Chr3:57633572-57633591 None:intergenic 60.0%
CCTCACACAGACTCCTCAGC+TGG - Chr3:57634517-57634536 MsG0380014641.01.T01:intron 60.0%
CCTCATTCCTTTCAGCCCGG+TGG - Chr3:57634070-57634089 MsG0380014641.01.T01:intron 60.0%
CTGTGTGTGTGTGTGCGCGT+GGG - Chr3:57632997-57633016 MsG0380014641.01.T02:three_prime_UTR 60.0%
GACTGTTCAGGGCAGCTACG+TGG - Chr3:57636246-57636265 MsG0380014641.01.T01:intron 60.0%
GCATGCACGGACCTGAGGAA+AGG + Chr3:57633133-57633152 None:intergenic 60.0%
GGGCCCCTTCTCCTAAGAAC+CGG + Chr3:57633575-57633594 None:intergenic 60.0%
GTAGACCCCCCTTCCTGCAT+GGG - Chr3:57636314-57636333 MsG0380014641.01.T01:intron 60.0%
GTGTGTGCGCGTGGGAAAAG+AGG - Chr3:57633005-57633024 MsG0380014641.01.T02:three_prime_UTR 60.0%
TCGAAGCATGCACGGACCTG+AGG + Chr3:57633138-57633157 None:intergenic 60.0%
TCTGTGTGTGTGTGTGCGCG+TGG - Chr3:57632996-57633015 MsG0380014641.01.T02:three_prime_UTR 60.0%
! GGGGCCCTCAATCTGGAGTT+CGG - Chr3:57633588-57633607 MsG0380014641.01.T01:CDS 60.0%
! TGATGGTGAGGCCTCGGGAA+AGG - Chr3:57636017-57636036 MsG0380014641.01.T01:intron 60.0%
!! GAACCTTGGTGGCGTGGTGT+TGG - Chr3:57634103-57634122 MsG0380014641.01.T01:intron 60.0%
CCTCTGCGATGCCTCGTTCG+AGG + Chr3:57636280-57636299 None:intergenic 65.0%
!! AGAAGGGCAAGAGGCACCGG+AGG - Chr3:57635976-57635995 MsG0380014641.01.T01:intron 65.0%
!! CCTCGAACGAGGCATCGCAG+AGG - Chr3:57636277-57636296 MsG0380014641.01.T01:intron 65.0%
GACCCCCCTTCCTGCATGGG+AGG - Chr3:57636317-57636336 MsG0380014641.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 57632990 57636775 57632990 ID=MsG0380014641.01;Name=MsG0380014641.01
Chr3 mRNA 57633026 57636775 57633026 ID=MsG0380014641.01.T01;Parent=MsG0380014641.01;Name=MsG0380014641.01.T01;_AED=0.32;_eAED=0.33;_QI=163|0.83|0.71|1|0.5|0.28|7|194|367
Chr3 exon 57633026 57633185 57633026 ID=MsG0380014641.01.T01:exon:11134;Parent=MsG0380014641.01.T01
Chr3 exon 57633414 57633825 57633414 ID=MsG0380014641.01.T01:exon:11133;Parent=MsG0380014641.01.T01
Chr3 five_prime_UTR 57636625 57636775 57636625 ID=MsG0380014641.01.T01:five_prime_utr;Parent=MsG0380014641.01.T01
Chr3 five_prime_UTR 57635738 57635749 57635738 ID=MsG0380014641.01.T01:five_prime_utr;Parent=MsG0380014641.01.T01
Chr3 CDS 57635470 57635737 57635470 ID=MsG0380014641.01.T01:cds;Parent=MsG0380014641.01.T01
Chr3 CDS 57635149 57635312 57635149 ID=MsG0380014641.01.T01:cds;Parent=MsG0380014641.01.T01
Chr3 CDS 57634905 57635033 57634905 ID=MsG0380014641.01.T01:cds;Parent=MsG0380014641.01.T01
Chr3 CDS 57634616 57634780 57634616 ID=MsG0380014641.01.T01:cds;Parent=MsG0380014641.01.T01
Chr3 CDS 57633448 57633825 57633448 ID=MsG0380014641.01.T01:cds;Parent=MsG0380014641.01.T01
Chr3 three_prime_UTR 57633414 57633447 57633414 ID=MsG0380014641.01.T01:three_prime_utr;Parent=MsG0380014641.01.T01
Chr3 three_prime_UTR 57633026 57633185 57633026 ID=MsG0380014641.01.T01:three_prime_utr;Parent=MsG0380014641.01.T01
Chr3 mRNA 57632990 57636775 57632990 ID=MsG0380014641.01.T02;Parent=MsG0380014641.01;Name=MsG0380014641.01.T02;_AED=0.29;_eAED=0.30;_QI=163|0.8|0.66|1|0.6|0.5|6|458|367
Chr3 exon 57632990 57633825 57632990 ID=MsG0380014641.01.T02:exon:11135;Parent=MsG0380014641.01.T02
Chr3 five_prime_UTR 57636625 57636775 57636625 ID=MsG0380014641.01.T02:five_prime_utr;Parent=MsG0380014641.01.T02
Chr3 five_prime_UTR 57635738 57635749 57635738 ID=MsG0380014641.01.T02:five_prime_utr;Parent=MsG0380014641.01.T02
Chr3 CDS 57635470 57635737 57635470 ID=MsG0380014641.01.T02:cds;Parent=MsG0380014641.01.T02
Chr3 CDS 57635149 57635312 57635149 ID=MsG0380014641.01.T02:cds;Parent=MsG0380014641.01.T02
Chr3 CDS 57634905 57635033 57634905 ID=MsG0380014641.01.T02:cds;Parent=MsG0380014641.01.T02
Chr3 CDS 57634616 57634780 57634616 ID=MsG0380014641.01.T02:cds;Parent=MsG0380014641.01.T02
Chr3 CDS 57633448 57633825 57633448 ID=MsG0380014641.01.T02:cds;Parent=MsG0380014641.01.T02
Chr3 three_prime_UTR 57632990 57633447 57632990 ID=MsG0380014641.01.T02:three_prime_utr;Parent=MsG0380014641.01.T02
Gene Sequence

>MsG0380014641.01.T01

ATGCAACCCAAGTCGGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGAAATTACGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGTAAGCCTTTGCCTAAGCTTTATTGTTATTTTTTATTTTACCAATTGCTTTCAAGTTTTGCATGCATTTGGACTGGATGGGACTCCTAGTATTCTTCCAATTCTTTTGATGCAGGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAACGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAACAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG

>MsG0380014641.01.T02

ATGCAACCCAAGTCGGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGAAATTACGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGTAAGCCTTTGCCTAAGCTTTATTGTTATTTTTTATTTTACCAATTGCTTTCAAGTTTTGCATGCATTTGGACTGGATGGGACTCCTAGTATTCTTCCAATTCTTTTGATGCAGGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAACGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAACAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG
Protein sequence

>MsG0380014641.01.T01

MQPKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIVSLCLSFIVIFYFTNCFQVLHAFGLDGTPSILPILLMQACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ*

>MsG0380014641.01.T02

MQPKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIVSLCLSFIVIFYFTNCFQVLHAFGLDGTPSILPILLMQACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ*