AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014855.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014855.01.T01 MTR_3g465010 80.155 388 18 4 1 329 1 388 0.0 609
MsG0380014855.01.T01 MTR_5g015810 50.388 258 108 5 8 247 11 266 8.01e-76 238
MsG0380014855.01.T01 MTR_5g015810 29.167 216 127 7 120 329 208 403 4.09e-18 84.7
MsG0380014855.01.T01 MTR_4g095700 50.000 252 99 5 17 241 17 268 4.22e-73 232
MsG0380014855.01.T01 MTR_4g095700 50.588 85 38 2 244 328 330 410 7.93e-18 84.0
MsG0380014855.01.T01 MTR_4g122030 38.352 352 179 14 4 328 9 349 3.20e-65 209
MsG0380014855.01.T01 MTR_4g007130 47.843 255 121 7 8 254 25 275 2.22e-63 206
MsG0380014855.01.T01 MTR_4g007130 42.553 94 40 4 244 328 320 408 6.33e-13 69.3
MsG0380014855.01.T01 MTR_5g015810 47.959 196 83 4 70 247 1 195 1.10e-46 161
MsG0380014855.01.T01 MTR_5g015810 47.674 86 41 2 244 329 251 332 2.54e-18 84.7
MsG0380014855.01.T01 MTR_5g015810 50.000 148 67 2 107 247 2 149 1.53e-37 135
MsG0380014855.01.T01 MTR_5g015810 47.674 86 41 2 244 329 205 286 1.22e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014855.01.T01 AT4G37580 40.898 401 155 9 8 328 4 402 1.59e-90 276
MsG0380014855.01.T01 AT2G30090 55.372 242 94 5 8 247 15 244 1.25e-83 258
MsG0380014855.01.T01 AT5G67430 39.141 396 158 11 3 329 5 386 1.03e-82 256
MsG0380014855.01.T01 AT2G23060 48.315 267 102 6 8 241 7 270 1.79e-73 233
MsG0380014855.01.T01 AT2G23060 51.765 85 37 2 244 328 332 412 2.56e-20 91.3
MsG0380014855.01.T01 AT4G37580 38.529 340 131 7 66 328 7 345 2.13e-66 213
MsG0380014855.01.T01 AT5G67430 37.082 329 130 9 70 329 1 321 3.38e-61 198
MsG0380014855.01.T01 AT2G23060 48.529 136 60 2 116 241 1 136 2.68e-34 127
MsG0380014855.01.T01 AT2G23060 51.765 85 37 2 244 328 198 278 3.20e-21 92.0

Find 74 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAAGATGATATTAATAT+TGG 0.198020 3:-61392408 MsG0380014855.01.T01:CDS
ATTAAGGAATAAATTAAGTT+TGG 0.224040 3:-61392448 MsG0380014855.01.T01:CDS
AGCTCTTGTAGGTGGGATTT+TGG 0.230695 3:+61391943 None:intergenic
AATATATTTCCTATATCATT+AGG 0.292377 3:+61392468 None:intergenic
CTATTTGGTACTTGTCCATT+AGG 0.309103 3:+61392384 None:intergenic
CTAAGCATAGCCCAACTATT+TGG 0.312703 3:+61392369 None:intergenic
TTAAGGAATAAATTAAGTTT+GGG 0.313536 3:-61392447 MsG0380014855.01.T01:CDS
ATGATATAGGAAATATATTA+AGG 0.325837 3:-61392464 MsG0380014855.01.T01:CDS
TTTATGCACCACAAATCTTC+AGG 0.326456 3:+61392013 None:intergenic
AGGACATCCACCAAAGGATT+TGG 0.330187 3:-61392817 MsG0380014855.01.T01:CDS
ATGTCAATTTGTGCACAATA+TGG 0.349042 3:-61392137 MsG0380014855.01.T01:CDS
ATCATACTTTAAACCTCTCT+TGG 0.350495 3:+61391908 None:intergenic
GATATTAATATTGGGCCTAA+TGG 0.352217 3:-61392399 MsG0380014855.01.T01:CDS
AGTTTAACTACACAAAGTTT+AGG 0.361536 3:-61392623 MsG0380014855.01.T01:CDS
ATAAAAGTTGTAACTGTTCA+AGG 0.367914 3:-61392837 MsG0380014855.01.T01:CDS
TTAAAGATGATATTAATATT+GGG 0.372605 3:-61392407 MsG0380014855.01.T01:CDS
GTTTCTCTTCACAGACACTA+TGG 0.386937 3:-61393508 MsG0380014855.01.T01:CDS
TAGGGTATGCCCTAGGCTTA+AGG 0.390017 3:-61392788 MsG0380014855.01.T01:CDS
TCTCCACATCATAGAAGAAA+AGG 0.405669 3:-61392762 MsG0380014855.01.T01:CDS
ATCACTCTATAGAAGATTCA+TGG 0.406094 3:-61392508 MsG0380014855.01.T01:CDS
AAGATTATTGTGACTGAAGT+TGG 0.419377 3:-61392088 MsG0380014855.01.T01:CDS
TCTCATGCCCTGAAGATTTG+TGG 0.422983 3:-61392021 MsG0380014855.01.T01:CDS
ATTCTTCTAATGTTCTTACT+AGG 0.427168 3:+61392727 None:intergenic
TGAAGATTTGTGGTGCATAA+AGG 0.428454 3:-61392011 MsG0380014855.01.T01:CDS
ATGGACAAGTACCAAATAGT+TGG 0.433424 3:-61392380 MsG0380014855.01.T01:CDS
CTATGGGTGACCCCATTTGT+AGG 0.434012 3:-61393491 MsG0380014855.01.T01:CDS
ATAAATTAAGTTTGGGGACA+TGG 0.434467 3:-61392440 MsG0380014855.01.T01:CDS
AGCAGAGTTGGACAATGAAT+TGG 0.436658 3:-61392880 MsG0380014855.01.T01:CDS
GAATTGGTTGGTGTCATTCA+AGG 0.455654 3:-61392864 MsG0380014855.01.T01:CDS
ACTGTTTCGAATCCTACAAA+TGG 0.464122 3:+61393479 None:intergenic
TCATACTTTAAACCTCTCTT+GGG 0.469463 3:+61391909 None:intergenic
TTTAATGAGTGATGGTTCAC+AGG 0.470283 3:+61392579 None:intergenic
AGGGTATGCCCTAGGCTTAA+GGG 0.471150 3:-61392787 MsG0380014855.01.T01:CDS
CTGTTTCGAATCCTACAAAT+GGG 0.471230 3:+61393480 None:intergenic
GTTGGGCTATGCTTAGTGTA+TGG 0.480182 3:-61392362 MsG0380014855.01.T01:CDS
TCTACGAAAAGAGCTCTTGT+AGG 0.482372 3:+61391932 None:intergenic
CAAACAACATTGAAATATCA+AGG 0.489226 3:-61392551 MsG0380014855.01.T01:CDS
TGGACAAGTACCAAATAGTT+GGG 0.499070 3:-61392379 MsG0380014855.01.T01:CDS
TAGTAAGAACATTAGAAGAA+TGG 0.512758 3:-61392725 MsG0380014855.01.T01:CDS
CCAAAGGATTTGGCAAAAGT+AGG 0.514069 3:-61392807 MsG0380014855.01.T01:CDS
ACAGGGTTAACAAGAATAGA+TGG 0.514152 3:+61392597 None:intergenic
TTATGCACCACAAATCTTCA+GGG 0.517119 3:+61392014 None:intergenic
GTTTAGAATCAGAAGCTATG+AGG 0.517776 3:-61393601 MsG0380014855.01.T01:CDS
ATGGTTCATTTCTAATGATG+TGG 0.522995 3:-61392706 MsG0380014855.01.T01:CDS
ATATACCAGCATCATGTACA+TGG 0.524771 3:+61393455 None:intergenic
TCACTCTATAGAAGATTCAT+GGG 0.529453 3:-61392507 MsG0380014855.01.T01:CDS
CAAAGGATTTGGCAAAAGTA+GGG 0.531057 3:-61392806 MsG0380014855.01.T01:CDS
CTCCACATCATAGAAGAAAA+GGG 0.538419 3:-61392761 MsG0380014855.01.T01:CDS
TTTCTCTTCACAGACACTAT+GGG 0.544269 3:-61393507 MsG0380014855.01.T01:CDS
GTGGAGATACCCTTAAGCCT+AGG 0.544733 3:+61392778 None:intergenic
ATGCTTAGTGTATGGAATAG+TGG 0.546161 3:-61392354 MsG0380014855.01.T01:intron
ATTAAGTTTGGGGACATGGA+TGG 0.547711 3:-61392436 MsG0380014855.01.T01:CDS
CATCATAGAAGAAAAGGGAT+TGG 0.551271 3:-61392756 MsG0380014855.01.T01:CDS
TGGATGTTAGGTAGCAGAGT+TGG 0.556839 3:-61392892 MsG0380014855.01.T01:intron
ACGAAAAGAGCTCTTGTAGG+TGG 0.561968 3:+61391935 None:intergenic
TAAGGAATAAATTAAGTTTG+GGG 0.567784 3:-61392446 MsG0380014855.01.T01:CDS
CAGTCCCATGTACATGATGC+TGG 0.573817 3:-61393460 MsG0380014855.01.T01:intron
TTTAGAATCAGAAGCTATGA+GGG 0.576337 3:-61393600 MsG0380014855.01.T01:CDS
TTAGAGAGAAAATGTGAGGT+AGG 0.580395 3:-61393546 MsG0380014855.01.T01:CDS
ATTATTGTGACTGAAGTTGG+AGG 0.580952 3:-61392085 MsG0380014855.01.T01:CDS
TGGAGATACCCTTAAGCCTA+GGG 0.588065 3:+61392779 None:intergenic
TGATGTGGACTATGCATACA+TGG 0.598697 3:-61392691 MsG0380014855.01.T01:CDS
GCAAAAGTAGGGTATGCCCT+AGG 0.599208 3:-61392795 MsG0380014855.01.T01:CDS
CGAAAAGAGCTCTTGTAGGT+GGG 0.600873 3:+61391936 None:intergenic
TTAATGAGTGATGGTTCACA+GGG 0.619510 3:+61392580 None:intergenic
AAGAGAAACACACTTTCTGA+TGG 0.631909 3:+61393522 None:intergenic
TCAATCATCACATTCCACAT+TGG 0.637209 3:-61392051 MsG0380014855.01.T01:CDS
AAATTTAGAGAGAAAATGTG+AGG 0.640564 3:-61393550 MsG0380014855.01.T01:CDS
CATGAGAGCAACTTCCAATG+TGG 0.679406 3:+61392037 None:intergenic
TATACCAGCATCATGTACAT+GGG 0.680033 3:+61393456 None:intergenic
TGTTCAAGGACATCCACCAA+AGG 0.683056 3:-61392823 MsG0380014855.01.T01:CDS
GAGTTGGACAATGAATTGGT+TGG 0.721734 3:-61392876 MsG0380014855.01.T01:CDS
CACTCTATAGAAGATTCATG+GGG 0.722156 3:-61392506 MsG0380014855.01.T01:CDS
TGTTTCGAATCCTACAAATG+GGG 0.724283 3:+61393481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGATGATATTAATATT+GGG - Chr3:61393124-61393143 MsG0380014855.01.T01:intron 10.0%
!! TTTAAAGATGATATTAATAT+TGG - Chr3:61393123-61393142 MsG0380014855.01.T01:intron 10.0%
!! AAAAGAGAAAAGAAAAAAAA+AGG + Chr3:61392156-61392175 None:intergenic 15.0%
!! AAAATCTTCAATATATATTG+CGG + Chr3:61392382-61392401 None:intergenic 15.0%
!! AAAGAGAAAAGAAAAAAAAA+GGG + Chr3:61392155-61392174 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + Chr3:61393066-61393085 None:intergenic 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + Chr3:61393325-61393344 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - Chr3:61393067-61393086 MsG0380014855.01.T01:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - Chr3:61393083-61393102 MsG0380014855.01.T01:intron 15.0%
!! TACATAAAATAAAATCCAAA+AGG + Chr3:61393326-61393345 None:intergenic 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - Chr3:61393084-61393103 MsG0380014855.01.T01:intron 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - Chr3:61393326-61393345 MsG0380014855.01.T01:intron 15.0%
!! TAAGGAATAAATTAAGTTTG+GGG - Chr3:61393085-61393104 MsG0380014855.01.T01:intron 20.0%
!!! TCAAGTACAATTTTAAATTG+TGG - Chr3:61392215-61392234 MsG0380014855.01.T01:intron 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - Chr3:61392492-61392511 MsG0380014855.01.T01:CDS 20.0%
! AAAGTAGGCAATTTAAACAT+GGG + Chr3:61393287-61393306 None:intergenic 25.0%
! AAATTGTACTTGAAAGAACA+AGG + Chr3:61392208-61392227 None:intergenic 25.0%
! AAATTTAGAGAGAAAATGTG+AGG - Chr3:61391981-61392000 MsG0380014855.01.T01:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - Chr3:61392908-61392927 MsG0380014855.01.T01:intron 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - Chr3:61392694-61392713 MsG0380014855.01.T01:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + Chr3:61392807-61392826 None:intergenic 25.0%
! CAAACAACATTGAAATATCA+AGG - Chr3:61392980-61392999 MsG0380014855.01.T01:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + Chr3:61393234-61393253 None:intergenic 25.0%
! TAAAGTAGGCAATTTAAACA+TGG + Chr3:61393288-61393307 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - Chr3:61392627-61392646 MsG0380014855.01.T01:CDS 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - Chr3:61392806-61392825 MsG0380014855.01.T01:CDS 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + Chr3:61393302-61393321 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + Chr3:61392196-61392215 None:intergenic 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + Chr3:61392195-61392214 None:intergenic 25.0%
!! ACAATTTTAAATTGTGGTTG+CGG - Chr3:61392221-61392240 MsG0380014855.01.T01:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - Chr3:61393201-61393220 MsG0380014855.01.T01:intron 25.0%
!! TCTTTTCTCTTTTCCTTTTA+TGG - Chr3:61392163-61392182 MsG0380014855.01.T01:intron 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + Chr3:61392963-61392982 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + Chr3:61392580-61392599 None:intergenic 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - Chr3:61393054-61393073 MsG0380014855.01.T01:intron 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - Chr3:61393241-61393260 MsG0380014855.01.T01:intron 25.0%
!!! TACATTTTGATGCAATATGA+AGG + Chr3:61392259-61392278 None:intergenic 25.0%
AAATGGGATTGATCCATAAA+AGG + Chr3:61392179-61392198 None:intergenic 30.0%
AAGATTATTGTGACTGAAGT+TGG - Chr3:61393443-61393462 MsG0380014855.01.T01:intron 30.0%
ACATCCAATTAAGAAGTTAG+TGG + Chr3:61392626-61392645 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - Chr3:61393091-61393110 MsG0380014855.01.T01:intron 30.0%
ATCACTCTATAGAAGATTCA+TGG - Chr3:61393023-61393042 MsG0380014855.01.T01:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + Chr3:61393052-61393071 None:intergenic 30.0%
ATGGTTCATTTCTAATGATG+TGG - Chr3:61392825-61392844 MsG0380014855.01.T01:CDS 30.0%
ATGTCAATTTGTGCACAATA+TGG - Chr3:61393394-61393413 MsG0380014855.01.T01:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - Chr3:61393132-61393151 MsG0380014855.01.T01:intron 30.0%
GATCAAAGAACTAGAAAACA+TGG + Chr3:61392593-61392612 None:intergenic 30.0%
TCACTCTATAGAAGATTCAT+GGG - Chr3:61393024-61393043 MsG0380014855.01.T01:intron 30.0%
TCTCATAACCCTTTATATTG+CGG - Chr3:61392315-61392334 MsG0380014855.01.T01:intron 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + Chr3:61392341-61392360 None:intergenic 30.0%
! TTTAGAATCAGAAGCTATGA+GGG - Chr3:61391931-61391950 MsG0380014855.01.T01:CDS 30.0%
AAGAGAAACACACTTTCTGA+TGG + Chr3:61392012-61392031 None:intergenic 35.0%
ACAGGGTTAACAAGAATAGA+TGG + Chr3:61392937-61392956 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + Chr3:61392055-61392074 None:intergenic 35.0%
ATATACCAGCATCATGTACA+TGG + Chr3:61392079-61392098 None:intergenic 35.0%
ATGCTTAGTGTATGGAATAG+TGG - Chr3:61393177-61393196 MsG0380014855.01.T01:intron 35.0%
ATGGACAAGTACCAAATAGT+TGG - Chr3:61393151-61393170 MsG0380014855.01.T01:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - Chr3:61393341-61393360 MsG0380014855.01.T01:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - Chr3:61393446-61393465 MsG0380014855.01.T01:intron 35.0%
CAAAGGATTTGGCAAAAGTA+GGG - Chr3:61392725-61392744 MsG0380014855.01.T01:CDS 35.0%
CACTCTATAGAAGATTCATG+GGG - Chr3:61393025-61393044 MsG0380014855.01.T01:intron 35.0%
CATCATAGAAGAAAAGGGAT+TGG - Chr3:61392775-61392794 MsG0380014855.01.T01:CDS 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + Chr3:61393311-61393330 None:intergenic 35.0%
CTATTTGGTACTTGTCCATT+AGG + Chr3:61393150-61393169 None:intergenic 35.0%
CTCCACATCATAGAAGAAAA+GGG - Chr3:61392770-61392789 MsG0380014855.01.T01:CDS 35.0%
CTGTTTCGAATCCTACAAAT+GGG + Chr3:61392054-61392073 None:intergenic 35.0%
TATACCAGCATCATGTACAT+GGG + Chr3:61392078-61392097 None:intergenic 35.0%
TCAATCATCACATTCCACAT+TGG - Chr3:61393480-61393499 MsG0380014855.01.T01:CDS 35.0%
TCAGTTTACAACTGCAAATG+TGG - Chr3:61392356-61392375 MsG0380014855.01.T01:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + Chr3:61392623-61392642 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - Chr3:61392619-61392638 MsG0380014855.01.T01:CDS 35.0%
TCTCCACATCATAGAAGAAA+AGG - Chr3:61392769-61392788 MsG0380014855.01.T01:CDS 35.0%
TGAAGATTTGTGGTGCATAA+AGG - Chr3:61393520-61393539 MsG0380014855.01.T01:CDS 35.0%
TGGACAAGTACCAAATAGTT+GGG - Chr3:61393152-61393171 MsG0380014855.01.T01:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - Chr3:61393342-61393361 MsG0380014855.01.T01:intron 35.0%
TGTTTCGAATCCTACAAATG+GGG + Chr3:61392053-61392072 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + Chr3:61392954-61392973 None:intergenic 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - Chr3:61391985-61392004 MsG0380014855.01.T01:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + Chr3:61393520-61393539 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + Chr3:61392955-61392974 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + Chr3:61393521-61393540 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - Chr3:61392024-61392043 MsG0380014855.01.T01:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + Chr3:61392775-61392794 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - Chr3:61393308-61393327 MsG0380014855.01.T01:intron 35.0%
! GTTTAGAATCAGAAGCTATG+AGG - Chr3:61391930-61391949 MsG0380014855.01.T01:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+CGG + Chr3:61392536-61392555 None:intergenic 35.0%
AGCAGAGTTGGACAATGAAT+TGG - Chr3:61392651-61392670 MsG0380014855.01.T01:CDS 40.0%
ATTAAGTTTGGGGACATGGA+TGG - Chr3:61393095-61393114 MsG0380014855.01.T01:intron 40.0%
CATTGTGGCCGCAATATAAA+GGG + Chr3:61392326-61392345 None:intergenic 40.0%
CCAAAGGATTTGGCAAAAGT+AGG - Chr3:61392724-61392743 MsG0380014855.01.T01:CDS 40.0%
CTAAGCATAGCCCAACTATT+TGG + Chr3:61393165-61393184 None:intergenic 40.0%
GAGTTGGACAATGAATTGGT+TGG - Chr3:61392655-61392674 MsG0380014855.01.T01:CDS 40.0%
GTTTCTCTTCACAGACACTA+TGG - Chr3:61392023-61392042 MsG0380014855.01.T01:CDS 40.0%
TCTACGAAAAGAGCTCTTGT+AGG + Chr3:61393602-61393621 None:intergenic 40.0%
! ACTTTTGCCAAATCCTTTGG+TGG + Chr3:61392724-61392743 None:intergenic 40.0%
! TGATGTGGACTATGCATACA+TGG - Chr3:61392840-61392859 MsG0380014855.01.T01:CDS 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + Chr3:61393368-61393387 None:intergenic 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - Chr3:61393354-61393373 MsG0380014855.01.T01:intron 40.0%
!! CCTACTTTTGCCAAATCCTT+TGG + Chr3:61392727-61392746 None:intergenic 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - Chr3:61392667-61392686 MsG0380014855.01.T01:CDS 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - Chr3:61393353-61393372 MsG0380014855.01.T01:intron 40.0%
ACGAAAAGAGCTCTTGTAGG+TGG + Chr3:61393599-61393618 None:intergenic 45.0%
AGGACATCCACCAAAGGATT+TGG - Chr3:61392714-61392733 MsG0380014855.01.T01:CDS 45.0%
CATGAGAGCAACTTCCAATG+TGG + Chr3:61393497-61393516 None:intergenic 45.0%
CCATTGTGGCCGCAATATAA+AGG + Chr3:61392327-61392346 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - Chr3:61392324-61392343 MsG0380014855.01.T01:intron 45.0%
CGAAAAGAGCTCTTGTAGGT+GGG + Chr3:61393598-61393617 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - Chr3:61393169-61393188 MsG0380014855.01.T01:intron 45.0%
TACAGTTGTGGCTGCACTTA+CGG + Chr3:61392549-61392568 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - Chr3:61393510-61393529 MsG0380014855.01.T01:CDS 45.0%
TGCAGCCACAACTGTATATG+CGG - Chr3:61392553-61392572 MsG0380014855.01.T01:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + Chr3:61392755-61392774 None:intergenic 45.0%
TGGATGTTAGGTAGCAGAGT+TGG - Chr3:61392639-61392658 MsG0380014855.01.T01:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - Chr3:61392708-61392727 MsG0380014855.01.T01:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + Chr3:61393591-61393610 None:intergenic 45.0%
! TCTTTTCGTAGACCCAAGAG+AGG - Chr3:61393610-61393629 MsG0380014855.01.T01:CDS 45.0%
AGGGTATGCCCTAGGCTTAA+GGG - Chr3:61392744-61392763 MsG0380014855.01.T01:CDS 50.0%
CAGTCCCATGTACATGATGC+TGG - Chr3:61392071-61392090 MsG0380014855.01.T01:CDS 50.0%
CTATGGGTGACCCCATTTGT+AGG - Chr3:61392040-61392059 MsG0380014855.01.T01:CDS 50.0%
GCAAAAGTAGGGTATGCCCT+AGG - Chr3:61392736-61392755 MsG0380014855.01.T01:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + Chr3:61392756-61392775 None:intergenic 50.0%
GTGGTCCGCATATACAGTTG+TGG + Chr3:61392561-61392580 None:intergenic 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - Chr3:61392743-61392762 MsG0380014855.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr3 gene 61391916 61393637 61391916 ID=MsG0380014855.01;Name=MsG0380014855.01
Chr3 mRNA 61391916 61393637 61391916 ID=MsG0380014855.01.T01;Parent=MsG0380014855.01;Name=MsG0380014855.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|329
Chr3 exon 61393461 61393637 61393461 ID=MsG0380014855.01.T01:exon:6297;Parent=MsG0380014855.01.T01
Chr3 exon 61392355 61392904 61392355 ID=MsG0380014855.01.T01:exon:6296;Parent=MsG0380014855.01.T01
Chr3 exon 61391916 61392178 61391916 ID=MsG0380014855.01.T01:exon:6295;Parent=MsG0380014855.01.T01
Chr3 CDS 61393461 61393637 61393461 ID=MsG0380014855.01.T01:cds;Parent=MsG0380014855.01.T01
Chr3 CDS 61392355 61392904 61392355 ID=MsG0380014855.01.T01:cds;Parent=MsG0380014855.01.T01
Chr3 CDS 61391916 61392178 61391916 ID=MsG0380014855.01.T01:cds;Parent=MsG0380014855.01.T01
Gene Sequence

>MsG0380014855.01.T01

ATGGAATTCAACAAGTTTAGAATCAGAAGCTATGAGGGTCAATCAGCTGATAGAGCTCAAGTTGAAAATTTAGAGAGAAAATGTGAGGTAGGACCATCAGAAAGTGTGTTTCTCTTCACAGACACTATGGGTGACCCCATTTGTAGGATTCGAAACAGTCCCATGTACATGATGCTGGTAGCAGAGTTGGACAATGAATTGGTTGGTGTCATTCAAGGCTCTATAAAAGTTGTAACTGTTCAAGGACATCCACCAAAGGATTTGGCAAAAGTAGGGTATGCCCTAGGCTTAAGGGTATCTCCACATCATAGAAGAAAAGGGATTGGTTCAAGCCTAGTAAGAACATTAGAAGAATGGTTCATTTCTAATGATGTGGACTATGCATACATGGCAACAGAGAAAGATAATCATGCATCAGTCAATCTCTTCATGAACAAGTTTAACTACACAAAGTTTAGGACACCATCTATTCTTGTTAACCCTGTGAACCATCACTCATTAAAAATCTCAAACAACATTGAAATATCAAGGTTAAAAATTGAACAAGCTGAATCACTCTATAGAAGATTCATGGGGTCCACAGAGTTTTTTCCTAATGATATAGGAAATATATTAAGGAATAAATTAAGTTTGGGGACATGGATGGCATATTTTAAAGATGATATTAATATTGGGCCTAATGGACAAGTACCAAATAGTTGGGCTATGCTTAGTGTATGGAATAGTGGGAAGCTAGTGAAAGCTCTATGTCAATTTGTGCACAATATGGCTAAAGAGAGTAAAGATGAGAAGTGTAAGATTATTGTGACTGAAGTTGGAGGAAGAGATGAACTCAATCATCACATTCCACATTGGAAGTTGCTCTCATGCCCTGAAGATTTGTGGTGCATAAAGGCACTGAAAAATGAAGTACTTTCAATTAATACTTTGCATGAATTAACCAAAATCCCACCTACAAGAGCTCTTTTCGTAGACCCAAGAGAGGTTTAA
Protein sequence

>MsG0380014855.01.T01

MEFNKFRIRSYEGQSADRAQVENLERKCEVGPSESVFLFTDTMGDPICRIRNSPMYMMLVAELDNELVGVIQGSIKVVTVQGHPPKDLAKVGYALGLRVSPHHRRKGIGSSLVRTLEEWFISNDVDYAYMATEKDNHASVNLFMNKFNYTKFRTPSILVNPVNHHSLKISNNIEISRLKIEQAESLYRRFMGSTEFFPNDIGNILRNKLSLGTWMAYFKDDINIGPNGQVPNSWAMLSVWNSGKLVKALCQFVHNMAKESKDEKCKIIVTEVGGRDELNHHIPHWKLLSCPEDLWCIKALKNEVLSINTLHELTKIPPTRALFVDPREV*