AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016012.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016012.01.T01 MTR_3g082790 64.885 131 44 2 53 182 85 214 1.83e-48 166
MsG0380016012.01.T01 MTR_3g082790 64.885 131 44 2 53 182 125 254 2.00e-48 166
MsG0380016012.01.T01 MTR_3g081360 56.429 140 45 3 46 182 100 226 1.42e-39 142
MsG0380016012.01.T01 MTR_3g081390 95.000 60 3 0 53 112 67 126 4.05e-36 123
MsG0380016012.01.T01 MTR_3g081380 77.465 71 16 0 46 116 113 183 2.18e-33 118
MsG0380016012.01.T01 MTR_2g026310 44.615 130 68 4 47 174 115 242 2.57e-23 97.4
MsG0380016012.01.T01 MTR_2g026380 56.923 65 28 0 47 111 115 179 1.26e-20 89.7
MsG0380016012.01.T01 MTR_7g063290 57.812 64 27 0 54 117 121 184 1.74e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016012.01.T01 AT3G07740 40.714 140 68 4 47 183 47 174 9.18e-25 101
MsG0380016012.01.T01 AT3G07740 40.714 140 68 4 47 183 97 224 1.08e-24 101
MsG0380016012.01.T01 AT3G07740 40.714 140 68 4 47 183 125 252 1.34e-24 101
MsG0380016012.01.T01 AT3G07740 40.714 140 68 4 47 183 118 245 1.60e-24 100
MsG0380016012.01.T01 AT4G16420 57.317 82 31 1 47 128 112 189 1.15e-23 98.2
MsG0380016012.01.T01 AT4G16420 57.317 82 31 1 47 128 112 189 1.17e-23 98.2
MsG0380016012.01.T01 AT4G16420 64.615 65 23 0 47 111 112 176 1.72e-23 97.8

Find 47 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATGGGTATAATTTATA+TGG 0.196386 3:-77891512 MsG0380016012.01.T01:CDS
TCTAAGATGGCTGCCATTAA+TGG 0.200660 3:-77891527 MsG0380016012.01.T01:CDS
GTAGGATTTGTCTTATTCTA+TGG 0.220086 3:-77892667 MsG0380016012.01.T01:intron
AAAGAACCTCCGCTTTCTTA+TGG 0.227689 3:-77891642 MsG0380016012.01.T01:CDS
ACATGTATGGATTTGCAAAT+TGG 0.237240 3:-77893087 MsG0380016012.01.T01:CDS
ATATAAATTATACCCATTAA+TGG 0.301447 3:+77891514 None:intergenic
TTCAGAGTCAGCTCTGCATT+TGG 0.311067 3:+77891663 None:intergenic
CTACTTCAGTAACAAAATAA+AGG 0.313654 3:+77891362 None:intergenic
ATATAAAACAAAATGGGAAT+TGG 0.323541 3:-77894708 None:intergenic
CGGTAACTACATCATTATTC+TGG 0.355984 3:+77891425 None:intergenic
CTAAGATGGCTGCCATTAAT+GGG 0.390665 3:-77891526 MsG0380016012.01.T01:CDS
AAGGGAGATAAACTCAATAA+AGG 0.412890 3:-77892612 MsG0380016012.01.T01:intron
TATAAAACAAAATGGGAATT+GGG 0.426719 3:-77894707 None:intergenic
TTGAAGTCTTGGATAGAACT+TGG 0.435869 3:-77894624 MsG0380016012.01.T01:CDS
GAAGTACGCGCACTCCAATC+TGG 0.448025 3:+77893244 None:intergenic
TACTTCAGTAACAAAATAAA+GGG 0.462407 3:+77891363 None:intergenic
TAGGATTTGTCTTATTCTAT+GGG 0.465480 3:-77892666 MsG0380016012.01.T01:CDS
TTCCGCTTACATGTCCAGAT+TGG 0.474697 3:-77893258 MsG0380016012.01.T01:CDS
TTAATGGGTATAATTTATAT+GGG 0.485227 3:-77891511 MsG0380016012.01.T01:CDS
AGAGTCAGCTCTGCATTTGG+AGG 0.489977 3:+77891666 None:intergenic
AAAAGCGAATCTCAGTGTAT+TGG 0.503151 3:-77893037 MsG0380016012.01.T01:CDS
TCAGATATACATCATTATAG+TGG 0.505363 3:+77893014 None:intergenic
GAACTCATTGCCATGGCAAA+GGG 0.509241 3:-77892630 MsG0380016012.01.T01:CDS
TCAAATAGCCTTACAGGTAG+AGG 0.513546 3:+77892977 None:intergenic
TCAGCTTGAATATTCTAAGA+TGG 0.521307 3:-77891540 MsG0380016012.01.T01:intron
ATCATTATTCTGGCTCACAT+TGG 0.522015 3:+77891435 None:intergenic
TGGAGTGCGCGTACTTCTTG+AGG 0.523754 3:-77893238 MsG0380016012.01.T01:intron
TTGCAAATCCATACATGTCA+AGG 0.533100 3:+77893092 None:intergenic
GGAACTCATTGCCATGGCAA+AGG 0.538488 3:-77892631 MsG0380016012.01.T01:CDS
TGTTCATGAAGAAGTGTTTG+AGG 0.542509 3:-77894649 MsG0380016012.01.T01:CDS
TGAAGTCTTGGATAGAACTT+GGG 0.547029 3:-77894623 MsG0380016012.01.T01:intron
GAGTTTATCTCCCTTTGCCA+TGG 0.547094 3:+77892620 None:intergenic
ATGGTGTTGCTGAACATGTT+GGG 0.547672 3:-77893063 MsG0380016012.01.T01:CDS
TCATGAACACCACCAATATG+TGG 0.550920 3:+77894663 None:intergenic
CTTACAGGTAGAGGAAAAGA+TGG 0.568809 3:+77892986 None:intergenic
TACTTTATTCCATAAGAAAG+CGG 0.571493 3:+77891633 None:intergenic
TCTTTCAAGAACAATCAAGA+AGG 0.579208 3:-77891461 MsG0380016012.01.T01:CDS
TATGGATTTGCAAATTGGAA+TGG 0.589389 3:-77893082 MsG0380016012.01.T01:CDS
AATGATGTAGTTACCGCGGA+AGG 0.595395 3:-77891418 MsG0380016012.01.T01:CDS
AATGGTGTTGCTGAACATGT+TGG 0.605755 3:-77893064 MsG0380016012.01.T01:CDS
CAAAGAGGAACTCATTGCCA+TGG 0.615015 3:-77892637 MsG0380016012.01.T01:CDS
CTCAGAAAACATACCTTCCG+CGG 0.617736 3:+77891405 None:intergenic
TGCAAATCCATACATGTCAA+GGG 0.619428 3:+77893093 None:intergenic
CTCCAATCTGGACATGTAAG+CGG 0.649769 3:+77893256 None:intergenic
TTCTATGGGAAAGAACAAAG+AGG 0.651784 3:-77892652 MsG0380016012.01.T01:CDS
TTTATTCCATAAGAAAGCGG+AGG 0.664080 3:+77891636 None:intergenic
GAATAATGATGTAGTTACCG+CGG 0.694055 3:-77891422 MsG0380016012.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGTTTAAATTGATT+TGG + Chr3:77891899-77891918 None:intergenic 10.0%
!! ATTAAAAATAATTACACATT+TGG + Chr3:77891857-77891876 None:intergenic 10.0%
!! TATGATAAATGAAATAATTA+AGG + Chr3:77892889-77892908 None:intergenic 10.0%
!! TTAAAAAAATAAGAGTAAAT+TGG + Chr3:77894423-77894442 None:intergenic 10.0%
!! TTAAAAATAATTACACATTT+GGG + Chr3:77891856-77891875 None:intergenic 10.0%
!!! AAAAAAATTAATTTTTTACG+TGG - Chr3:77893237-77893256 MsG0380016012.01.T01:intron 10.0%
!!! AAAAAATTAATTTTTTACGT+GGG - Chr3:77893238-77893257 MsG0380016012.01.T01:intron 10.0%
!!! ACATATAAGATTTTAATTTT+TGG + Chr3:77894106-77894125 None:intergenic 10.0%
!!! ATTTTATTTTAGTTTTTTAC+AGG - Chr3:77892730-77892749 MsG0380016012.01.T01:intron 10.0%
!!! CGTAAAAAATTAATTTTTTT+TGG + Chr3:77893237-77893256 None:intergenic 10.0%
!! AAAATAATGATAATTACTCT+TGG + Chr3:77892298-77892317 None:intergenic 15.0%
!! ATAAAATAAATTAATGTGGT+AGG + Chr3:77892717-77892736 None:intergenic 15.0%
!! ATATAAATTATACCCATTAA+TGG + Chr3:77894512-77894531 None:intergenic 15.0%
!! TTGAATTAATACCATTATAA+CGG - Chr3:77892676-77892695 MsG0380016012.01.T01:intron 15.0%
!!! AAGTTTTTTTAAGTTTCAAA+TGG - Chr3:77891939-77891958 MsG0380016012.01.T01:intron 15.0%
!!! ATAAGATTTTAATTTTTGGA+GGG + Chr3:77894102-77894121 None:intergenic 15.0%
!!! ATTAATGGGTATAATTTATA+TGG - Chr3:77894511-77894530 MsG0380016012.01.T01:intron 15.0%
!!! TATAAGATTTTAATTTTTGG+AGG + Chr3:77894103-77894122 None:intergenic 15.0%
!!! TTAATGGGTATAATTTATAT+GGG - Chr3:77894512-77894531 MsG0380016012.01.T01:intron 15.0%
!! AAAACAAAGTAAATAGATTG+AGG + Chr3:77893946-77893965 None:intergenic 20.0%
!! AAAATAAGAGTAAATTGGTA+AGG + Chr3:77894418-77894437 None:intergenic 20.0%
!! AAGCTACTATATAATAAGTT+TGG + Chr3:77894070-77894089 None:intergenic 20.0%
!! CTTTGATCAAATAAAATAGA+CGG + Chr3:77891704-77891723 None:intergenic 20.0%
!! GATATTATCATAATCAATTC+AGG - Chr3:77891468-77891487 MsG0380016012.01.T01:CDS 20.0%
!! TACTTCAGTAACAAAATAAA+GGG + Chr3:77894663-77894682 None:intergenic 20.0%
!! TGTATGTGTATATTATAGTT+AGG - Chr3:77891641-77891660 MsG0380016012.01.T01:CDS 20.0%
!!! AAAAAGTACTATTAAAACTG+TGG - Chr3:77891537-77891556 MsG0380016012.01.T01:CDS 20.0%
!!! ACAGTTTTAATAGTACTTTT+TGG + Chr3:77891538-77891557 None:intergenic 20.0%
!!! AGTTTTAATAGTACTTTTTG+GGG + Chr3:77891536-77891555 None:intergenic 20.0%
!!! CAAATGGATCTTTAAATTTT+TGG - Chr3:77891955-77891974 MsG0380016012.01.T01:intron 20.0%
!!! CAGTTTTAATAGTACTTTTT+GGG + Chr3:77891537-77891556 None:intergenic 20.0%
! AGTAAGGATAGTAGATAATA+TGG + Chr3:77893557-77893576 None:intergenic 25.0%
! AGTATCAAATAAGTGTGTAT+AGG - Chr3:77892041-77892060 MsG0380016012.01.T01:intron 25.0%
! CTACTTCAGTAACAAAATAA+AGG + Chr3:77894664-77894683 None:intergenic 25.0%
! GGAAAACAAAAATGTGAATT+TGG + Chr3:77891342-77891361 None:intergenic 25.0%
! GTATCAAATAAGTGTGTATA+GGG - Chr3:77892042-77892061 MsG0380016012.01.T01:intron 25.0%
! GTCAAAGAGAATATATTATC+CGG + Chr3:77894209-77894228 None:intergenic 25.0%
! TAAAAATGCAACCAACAAAT+CGG + Chr3:77894296-77894315 None:intergenic 25.0%
! TAAAATAGACGGTTAAGATT+TGG + Chr3:77891693-77891712 None:intergenic 25.0%
! TACTTTATTCCATAAGAAAG+CGG + Chr3:77894393-77894412 None:intergenic 25.0%
! TCAGATATACATCATTATAG+TGG + Chr3:77893012-77893031 None:intergenic 25.0%
! TTACACATTGCAAGATATTA+GGG - Chr3:77891427-77891446 MsG0380016012.01.T01:CDS 25.0%
!! AAAGTATCACTCAATTTGAA+GGG + Chr3:77893856-77893875 None:intergenic 25.0%
!! TAGGATTTGTCTTATTCTAT+GGG - Chr3:77893357-77893376 MsG0380016012.01.T01:intron 25.0%
!! TGCAATAAATTACCCTTTTA+AGG + Chr3:77892105-77892124 None:intergenic 25.0%
!!! AATTTTTTACGTGGGTTAAT+GGG - Chr3:77893246-77893265 MsG0380016012.01.T01:CDS 25.0%
!!! ATTTGAAGGGAAAGTTTTAT+CGG + Chr3:77893843-77893862 None:intergenic 25.0%
!!! CATTTTTGTTTTCCACATAT+TGG - Chr3:77891348-77891367 MsG0380016012.01.T01:CDS 25.0%
!!! CGTCTATTTTATTTGATCAA+AGG - Chr3:77891702-77891721 MsG0380016012.01.T01:intron 25.0%
!!! CTTACTTGCTATATGTTAAA+TGG - Chr3:77892849-77892868 MsG0380016012.01.T01:intron 25.0%
!!! CTTTATTTTGTTACTGAAGT+AGG - Chr3:77894662-77894681 MsG0380016012.01.T01:CDS 25.0%
!!! TAACAAGCTTGTTTTGTTTT+AGG - Chr3:77892907-77892926 MsG0380016012.01.T01:intron 25.0%
!!! TAATTTTTTACGTGGGTTAA+TGG - Chr3:77893245-77893264 MsG0380016012.01.T01:CDS 25.0%
AAGATGTTGTGTTGAATGTA+CGG + Chr3:77893734-77893753 None:intergenic 30.0%
AAGGGAGATAAACTCAATAA+AGG - Chr3:77893411-77893430 MsG0380016012.01.T01:intron 30.0%
ACATGTATGGATTTGCAAAT+TGG - Chr3:77892936-77892955 MsG0380016012.01.T01:intron 30.0%
AGTTAAATCACTAAAGGTAG+AGG + Chr3:77893529-77893548 None:intergenic 30.0%
ATAATTACTCTTGGAGTCTT+TGG + Chr3:77892289-77892308 None:intergenic 30.0%
ATGATCTAAATCACCATTTG+TGG - Chr3:77893445-77893464 MsG0380016012.01.T01:intron 30.0%
ATTCTGCATAAGACATAACA+TGG + Chr3:77894335-77894354 None:intergenic 30.0%
ATTGCACCTATTATGTGTAT+AGG - Chr3:77892119-77892138 MsG0380016012.01.T01:intron 30.0%
ATTTATGACTGCTAATCCTT+TGG - Chr3:77894451-77894470 MsG0380016012.01.T01:intron 30.0%
CATGATCTATATACTTCACT+TGG + Chr3:77894043-77894062 None:intergenic 30.0%
GAAGACCTTGAAAATCTATA+AGG + Chr3:77893507-77893526 None:intergenic 30.0%
GAGAGTAGTTAAATCACTAA+AGG + Chr3:77893535-77893554 None:intergenic 30.0%
GTTACACATTGCAAGATATT+AGG - Chr3:77891426-77891445 MsG0380016012.01.T01:CDS 30.0%
TAATCAATTCAGGCTATAAG+TGG - Chr3:77891478-77891497 MsG0380016012.01.T01:CDS 30.0%
TATGGATTTGCAAATTGGAA+TGG - Chr3:77892941-77892960 MsG0380016012.01.T01:intron 30.0%
TCTTTCAAGAACAATCAAGA+AGG - Chr3:77894562-77894581 MsG0380016012.01.T01:intron 30.0%
TTGCACCTATTATGTGTATA+GGG - Chr3:77892120-77892139 MsG0380016012.01.T01:intron 30.0%
! CCAGAAATTTTACATAGCTT+GGG - Chr3:77893154-77893173 MsG0380016012.01.T01:intron 30.0%
! GTAGGATTTGTCTTATTCTA+TGG - Chr3:77893356-77893375 MsG0380016012.01.T01:intron 30.0%
! TCAGCTTGAATATTCTAAGA+TGG - Chr3:77894483-77894502 MsG0380016012.01.T01:intron 30.0%
!! AGTCATTTGAGTTGACATAT+TGG - Chr3:77894171-77894190 MsG0380016012.01.T01:intron 30.0%
!! GAAAGTATCACTCAATTTGA+AGG + Chr3:77893857-77893876 None:intergenic 30.0%
!! GTCATTTGAGTTGACATATT+GGG - Chr3:77894172-77894191 MsG0380016012.01.T01:intron 30.0%
!! TTTGTGAGCTATTTTATCGT+CGG + Chr3:77892200-77892219 None:intergenic 30.0%
!!! TTTTGTTTTCCACATATTGG+TGG - Chr3:77891351-77891370 MsG0380016012.01.T01:CDS 30.0%
AAAAGCGAATCTCAGTGTAT+TGG - Chr3:77892986-77893005 MsG0380016012.01.T01:intron 35.0%
AAGATGTATTCACCAAGTCT+TGG + Chr3:77894138-77894157 None:intergenic 35.0%
AAGCTGAGATGTTATACCAA+AGG + Chr3:77894470-77894489 None:intergenic 35.0%
AATTCTCTGTCTGATACTCT+CGG - Chr3:77891562-77891581 MsG0380016012.01.T01:intron 35.0%
AGATGCAAAATCTCCACAAA+TGG + Chr3:77893461-77893480 None:intergenic 35.0%
ATGTCAACTCAAATGACTAC+AGG + Chr3:77894169-77894188 None:intergenic 35.0%
ATTTCTAATCATATCTCGCC+TGG - Chr3:77893703-77893722 MsG0380016012.01.T01:intron 35.0%
CATGGTGTAATTGTTGTATG+TGG - Chr3:77893113-77893132 MsG0380016012.01.T01:intron 35.0%
CCCAAGCTATGTAAAATTTC+TGG + Chr3:77893157-77893176 None:intergenic 35.0%
CCTTGAAAATCTATAAGGCT+CGG + Chr3:77893502-77893521 None:intergenic 35.0%
CGGTAACTACATCATTATTC+TGG + Chr3:77894601-77894620 None:intergenic 35.0%
CTCATCTTTCTTTCGTGTAT+AGG - Chr3:77891746-77891765 MsG0380016012.01.T01:intron 35.0%
GAATAATGATGTAGTTACCG+CGG - Chr3:77894601-77894620 MsG0380016012.01.T01:intron 35.0%
GCAACATGTGTTTGAATTCA+TGG - Chr3:77893095-77893114 MsG0380016012.01.T01:CDS 35.0%
GTAAGACTGTAAATGTTGAG+CGG + Chr3:77893814-77893833 None:intergenic 35.0%
GTTGTCCCTATACACATAAT+AGG + Chr3:77892128-77892147 None:intergenic 35.0%
TAAGACTGTAAATGTTGAGC+GGG + Chr3:77893813-77893832 None:intergenic 35.0%
TAATTGTTGTATGTGGACGT+AGG - Chr3:77893120-77893139 MsG0380016012.01.T01:intron 35.0%
TATCAAATGCGCCGTTATAA+TGG + Chr3:77892690-77892709 None:intergenic 35.0%
TCCACAATAGGTCCTTAAAA+GGG - Chr3:77892090-77892109 MsG0380016012.01.T01:intron 35.0%
TGAAGTCTTGGATAGAACTT+GGG - Chr3:77891400-77891419 MsG0380016012.01.T01:CDS 35.0%
TGCAAATCCATACATGTCAA+GGG + Chr3:77892933-77892952 None:intergenic 35.0%
TTAGATACCAGCATGCATTT+AGG + Chr3:77893978-77893997 None:intergenic 35.0%
TTCTATGGGAAAGAACAAAG+AGG - Chr3:77893371-77893390 MsG0380016012.01.T01:intron 35.0%
TTGAAGTCTTGGATAGAACT+TGG - Chr3:77891399-77891418 MsG0380016012.01.T01:CDS 35.0%
TTGACCTGTACACTTAGAAT+TGG - Chr3:77891823-77891842 MsG0380016012.01.T01:intron 35.0%
TTGCAAATCCATACATGTCA+AGG + Chr3:77892934-77892953 None:intergenic 35.0%
TTTATTCCATAAGAAAGCGG+AGG + Chr3:77894390-77894409 None:intergenic 35.0%
! GCCAGAAATTTTACATAGCT+TGG - Chr3:77893153-77893172 MsG0380016012.01.T01:intron 35.0%
!! ATCATTATTCTGGCTCACAT+TGG + Chr3:77894591-77894610 None:intergenic 35.0%
!! GAAGGTATGTTTTCTGAGTA+TGG - Chr3:77894623-77894642 MsG0380016012.01.T01:intron 35.0%
!! TGTTCATGAAGAAGTGTTTG+AGG - Chr3:77891374-77891393 MsG0380016012.01.T01:CDS 35.0%
!!! AGGGACAACTTTTTAAGTGA+AGG - Chr3:77892061-77892080 MsG0380016012.01.T01:intron 35.0%
!!! TATTTTTTTCTAGAGAGCGC+TGG + Chr3:77892170-77892189 None:intergenic 35.0%
!!! TGTTTGAGGTTTTGAAGTCT+TGG - Chr3:77891388-77891407 MsG0380016012.01.T01:CDS 35.0%
!!! TTTTGTACTCACCGATTTGT+TGG - Chr3:77894282-77894301 MsG0380016012.01.T01:intron 35.0%
AAAGAACCTCCGCTTTCTTA+TGG - Chr3:77894381-77894400 MsG0380016012.01.T01:intron 40.0%
AAGAAAATATCGATCGAGCC+CGG - Chr3:77893291-77893310 MsG0380016012.01.T01:intron 40.0%
AAGACAAATCCTACGTCCAT+GGG + Chr3:77893350-77893369 None:intergenic 40.0%
AATGATCCCATCCTCCATTT+CGG - Chr3:77893892-77893911 MsG0380016012.01.T01:intron 40.0%
AATGCATGCTGGTATCTAAG+TGG - Chr3:77893979-77893998 MsG0380016012.01.T01:intron 40.0%
ACCATCAAATTCAAGCTGGA+TGG + Chr3:77893918-77893937 None:intergenic 40.0%
AGGGAGGAAGAGAAATTTGA+TGG - Chr3:77891446-77891465 MsG0380016012.01.T01:CDS 40.0%
AGTCTGTTACGTACGAGAAT+TGG + Chr3:77891797-77891816 None:intergenic 40.0%
ATCCTTACTGTCGAATCTAC+AGG - Chr3:77893568-77893587 MsG0380016012.01.T01:intron 40.0%
ATGTATTCACCAAGTCTTGG+AGG + Chr3:77894135-77894154 None:intergenic 40.0%
CACATTGCAAGATATTAGGG+AGG - Chr3:77891430-77891449 MsG0380016012.01.T01:CDS 40.0%
CTAAGATGGCTGCCATTAAT+GGG - Chr3:77894497-77894516 MsG0380016012.01.T01:intron 40.0%
CTCCACAATAGGTCCTTAAA+AGG - Chr3:77892089-77892108 MsG0380016012.01.T01:intron 40.0%
CTTACAGGTAGAGGAAAAGA+TGG + Chr3:77893040-77893059 None:intergenic 40.0%
GAGGTTTGTGGTTTGAGTAT+GGG - Chr3:77892804-77892823 MsG0380016012.01.T01:intron 40.0%
GCTTCCAATTCTAAGTGTAC+AGG + Chr3:77891830-77891849 None:intergenic 40.0%
GTAGACCATCAAATTCAAGC+TGG + Chr3:77893922-77893941 None:intergenic 40.0%
GTCTGTTACGTACGAGAATT+GGG + Chr3:77891796-77891815 None:intergenic 40.0%
TAAGACAAATCCTACGTCCA+TGG + Chr3:77893351-77893370 None:intergenic 40.0%
TCATGAACACCACCAATATG+TGG + Chr3:77891363-77891382 None:intergenic 40.0%
TCATGAACCTAAATGCATGC+TGG - Chr3:77893968-77893987 MsG0380016012.01.T01:intron 40.0%
TCTGTTACGTACGAGAATTG+GGG + Chr3:77891795-77891814 None:intergenic 40.0%
TGAGGTTTGTGGTTTGAGTA+TGG - Chr3:77892803-77892822 MsG0380016012.01.T01:intron 40.0%
TGTATTCACCAAGTCTTGGA+GGG + Chr3:77894134-77894153 None:intergenic 40.0%
TGTTATATCCCTCCAAGACT+TGG - Chr3:77894123-77894142 MsG0380016012.01.T01:intron 40.0%
TTAAGGACCTATTGTGGAGT+AGG + Chr3:77892088-77892107 None:intergenic 40.0%
! AAATCTATAAGGCTCGGTTG+TGG + Chr3:77893496-77893515 None:intergenic 40.0%
! CATCTTTTCCTCTACCTGTA+AGG - Chr3:77893038-77893057 MsG0380016012.01.T01:CDS 40.0%
! GAGTCTTTGGAGAATGTCTT+TGG + Chr3:77892276-77892295 None:intergenic 40.0%
! GAGTTGTCAAATAGCCTTAC+AGG + Chr3:77893055-77893074 None:intergenic 40.0%
! GTTAACGAGTCTGTTGGTAA+TGG + Chr3:77891669-77891688 None:intergenic 40.0%
! TCAAATAGCCTTACAGGTAG+AGG + Chr3:77893049-77893068 None:intergenic 40.0%
! TCTAAGATGGCTGCCATTAA+TGG - Chr3:77894496-77894515 MsG0380016012.01.T01:intron 40.0%
! TTTTAGGCCCTTGACATGTA+TGG - Chr3:77892923-77892942 MsG0380016012.01.T01:intron 40.0%
!! AATGGTGTTGCTGAACATGT+TGG - Chr3:77892959-77892978 MsG0380016012.01.T01:intron 40.0%
!! ACCCTTTTAAGGACCTATTG+TGG + Chr3:77892094-77892113 None:intergenic 40.0%
!! ATGGTGTTGCTGAACATGTT+GGG - Chr3:77892960-77892979 MsG0380016012.01.T01:intron 40.0%
!! CCGAGCCTTATAGATTTTCA+AGG - Chr3:77893499-77893518 MsG0380016012.01.T01:intron 40.0%
!! TTTGGTGTTAACGAGTCTGT+TGG + Chr3:77891675-77891694 None:intergenic 40.0%
AATGATGTAGTTACCGCGGA+AGG - Chr3:77894605-77894624 MsG0380016012.01.T01:intron 45.0%
AGAAAATATCGATCGAGCCC+GGG - Chr3:77893292-77893311 MsG0380016012.01.T01:intron 45.0%
AGAAGAGAGAGAGAGAGTTG+GGG + Chr3:77893627-77893646 None:intergenic 45.0%
AGAGAAGAGAGAGAGAGAGT+TGG + Chr3:77893629-77893648 None:intergenic 45.0%
ATATTGGGCAGTTGTGTCTC+CGG - Chr3:77894187-77894206 MsG0380016012.01.T01:intron 45.0%
CAAAGAGGAACTCATTGCCA+TGG - Chr3:77893386-77893405 MsG0380016012.01.T01:intron 45.0%
CTCAGAAAACATACCTTCCG+CGG + Chr3:77894621-77894640 None:intergenic 45.0%
CTCCAATCTGGACATGTAAG+CGG + Chr3:77892770-77892789 None:intergenic 45.0%
GAACTCATTGCCATGGCAAA+GGG - Chr3:77893393-77893412 MsG0380016012.01.T01:intron 45.0%
GACCTGTAGATTCGACAGTA+AGG + Chr3:77893573-77893592 None:intergenic 45.0%
GAGAAGAGAGAGAGAGAGTT+GGG + Chr3:77893628-77893647 None:intergenic 45.0%
GAGTTTATCTCCCTTTGCCA+TGG + Chr3:77893406-77893425 None:intergenic 45.0%
GCCATCCAGCTTGAATTTGA+TGG - Chr3:77893914-77893933 MsG0380016012.01.T01:intron 45.0%
GTTGAATGTACGGTAAGACC+AGG + Chr3:77893724-77893743 None:intergenic 45.0%
TGAAGGACCTACTCCACAAT+AGG - Chr3:77892078-77892097 MsG0380016012.01.T01:intron 45.0%
TTCAGAGTCAGCTCTGCATT+TGG + Chr3:77894363-77894382 None:intergenic 45.0%
TTCCGCTTACATGTCCAGAT+TGG - Chr3:77892765-77892784 MsG0380016012.01.T01:intron 45.0%
TTGTATGTGGACGTAGGTAG+TGG - Chr3:77893126-77893145 MsG0380016012.01.T01:intron 45.0%
!! ACGTGGGTTAATGGGCTATT+GGG - Chr3:77893254-77893273 MsG0380016012.01.T01:CDS 45.0%
!! GGTTAATGGGCTATTGGGTT+GGG - Chr3:77893259-77893278 MsG0380016012.01.T01:CDS 45.0%
!! TACGTGGGTTAATGGGCTAT+TGG - Chr3:77893253-77893272 MsG0380016012.01.T01:CDS 45.0%
!! TTTCTAGAGAGCGCTGGTAT+TGG + Chr3:77892164-77892183 None:intergenic 45.0%
!! AAATTTAAAAAACTTTAAAT+AGG + Chr3:77892018-77892037 None:intergenic 5.0%
!! TAAAATAAAATAAATTAATG+TGG + Chr3:77892721-77892740 None:intergenic 5.0%
!!! GTAAAAAATTAATTTTTTTT+GGG + Chr3:77893236-77893255 None:intergenic 5.0%
ACAAATCCTACGTCCATGGG+CGG + Chr3:77893347-77893366 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr3:77893669-77893688 None:intergenic 50.0%
AGAGTCAGCTCTGCATTTGG+AGG + Chr3:77894360-77894379 None:intergenic 50.0%
ATGTTGAGCGGGACAAGTGT+TGG + Chr3:77893802-77893821 None:intergenic 50.0%
CATGCGCGCACAAGAATTCT+TGG + Chr3:77893194-77893213 None:intergenic 50.0%
CGCGTACTTCTTGAGGTTTG+TGG - Chr3:77892792-77892811 MsG0380016012.01.T01:intron 50.0%
CTCTCTACACGCCCAAACAA+CGG - Chr3:77893595-77893614 MsG0380016012.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + Chr3:77893670-77893689 None:intergenic 50.0%
GGAACTCATTGCCATGGCAA+AGG - Chr3:77893392-77893411 MsG0380016012.01.T01:intron 50.0%
TTCAAGCTGGATGGCCGAAA+TGG + Chr3:77893909-77893928 None:intergenic 50.0%
! TATGTGGACGTAGGTAGTGG+CGG - Chr3:77893129-77893148 MsG0380016012.01.T01:intron 50.0%
! TGGGGTTAGCACCGTTGTTT+GGG + Chr3:77893609-77893628 None:intergenic 50.0%
! TTGGGGTTAGCACCGTTGTT+TGG + Chr3:77893610-77893629 None:intergenic 50.0%
!! GGGTTAATGGGCTATTGGGT+TGG - Chr3:77893258-77893277 MsG0380016012.01.T01:CDS 50.0%
AAGCTGGATGGCCGAAATGG+AGG + Chr3:77893906-77893925 None:intergenic 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG + Chr3:77893665-77893684 None:intergenic 55.0%
GAAGTACGCGCACTCCAATC+TGG + Chr3:77892782-77892801 None:intergenic 55.0%
GGATGGCCGAAATGGAGGAT+GGG + Chr3:77893901-77893920 None:intergenic 55.0%
TGGAGTGCGCGTACTTCTTG+AGG - Chr3:77892785-77892804 MsG0380016012.01.T01:intron 55.0%
TGGATGGCCGAAATGGAGGA+TGG + Chr3:77893902-77893921 None:intergenic 55.0%
GAGAGGGAGAGGAGAGAGAG+AGG + Chr3:77893654-77893673 None:intergenic 60.0%
ATCGAGCCCGGGCGAGTGTC+CGG - Chr3:77893303-77893322 MsG0380016012.01.T01:intron 70.0%
GTGGCTCCGCCCATGGACGT+AGG - Chr3:77893338-77893357 MsG0380016012.01.T01:intron 70.0%
CCATGGGCGGAGCCACCAGC+CGG + Chr3:77893334-77893353 None:intergenic 75.0%
TCGAGCCCGGGCGAGTGTCC+GGG - Chr3:77893304-77893323 MsG0380016012.01.T01:intron 75.0%
! CCGGCTGGTGGCTCCGCCCA+TGG - Chr3:77893331-77893350 MsG0380016012.01.T01:intron 80.0%
! GAGCCACCAGCCGGCGAGCC+CGG + Chr3:77893325-77893344 None:intergenic 80.0%
! GAGTGTCCGGGCTCGCCGGC+TGG - Chr3:77893316-77893335 MsG0380016012.01.T01:intron 80.0%
! GCGAGCCCGGACACTCGCCC+GGG + Chr3:77893312-77893331 None:intergenic 80.0%
! GGCGAGCCCGGACACTCGCC+CGG + Chr3:77893313-77893332 None:intergenic 80.0%
! GGGCGAGTGTCCGGGCTCGC+CGG - Chr3:77893312-77893331 MsG0380016012.01.T01:intron 80.0%
!! TGTCCGGGCTCGCCGGCTGG+TGG - Chr3:77893319-77893338 MsG0380016012.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77891327 77894718 77891327 ID=MsG0380016012.01;Name=MsG0380016012.01
Chr3 mRNA 77891327 77894718 77891327 ID=MsG0380016012.01.T01;Parent=MsG0380016012.01;Name=MsG0380016012.01.T01;_AED=0.50;_eAED=0.72;_QI=0|0|0|1|0.6|0.83|6|0|212
Chr3 exon 77894624 77894718 77894624 ID=MsG0380016012.01.T01:exon:18262;Parent=MsG0380016012.01.T01
Chr3 exon 77893239 77893293 77893239 ID=MsG0380016012.01.T01:exon:18261;Parent=MsG0380016012.01.T01
Chr3 exon 77892991 77893116 77892991 ID=MsG0380016012.01.T01:exon:18260;Parent=MsG0380016012.01.T01
Chr3 exon 77892613 77892685 77892613 ID=MsG0380016012.01.T01:exon:18259;Parent=MsG0380016012.01.T01
Chr3 exon 77891636 77891693 77891636 ID=MsG0380016012.01.T01:exon:18258;Parent=MsG0380016012.01.T01
Chr3 exon 77891327 77891558 77891327 ID=MsG0380016012.01.T01:exon:18257;Parent=MsG0380016012.01.T01
Chr3 CDS 77894624 77894718 77894624 ID=MsG0380016012.01.T01:cds;Parent=MsG0380016012.01.T01
Chr3 CDS 77893239 77893293 77893239 ID=MsG0380016012.01.T01:cds;Parent=MsG0380016012.01.T01
Chr3 CDS 77892991 77893116 77892991 ID=MsG0380016012.01.T01:cds;Parent=MsG0380016012.01.T01
Chr3 CDS 77892613 77892685 77892613 ID=MsG0380016012.01.T01:cds;Parent=MsG0380016012.01.T01
Chr3 CDS 77891636 77891693 77891636 ID=MsG0380016012.01.T01:cds;Parent=MsG0380016012.01.T01
Chr3 CDS 77891327 77891558 77891327 ID=MsG0380016012.01.T01:cds;Parent=MsG0380016012.01.T01
Gene Sequence

>MsG0380016012.01.T01

ATGGGAATTGGGCCAAATTCACATTTTTGTTTTCCACATATTGGTGGTGTTCATGAAGAAGTGTTTGAGGTTTTGAAGTCTTGGATAGAACTTGGGAAGATCTATCTTTTCCGCTTACATGTCCAGATTGGAGTGCGCGTACTTCTTGAGGCCCTTGACATGTATGGATTTGCAAATTGGAATGGTGTTGCTGAACATGTTGGGACAAAAAGCGAATCTCAGTGTATTGGCCACTATAATGATGTATATCTGAATTCGCCATCTTTTCCTCTACCTGATTTGTCTTATTCTATGGGAAAGAACAAAGAGGAACTCATTGCCATGGCAAAGGGAGATAAACTCAATAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAACCTCCGCTTTCTTATGGAATAAACTTGAATATTCTAAGATGGCTGCCATTAATGGGTATAATTTATATGGGTGATATGAATTCAGCAAGCGATAAAGCTCTTTCAAGAACAATCAAGAAGGCTTCCAATGTGAGCCAGAATAATGATGTAGTTACCGCGGAAGGTATGTTTTCTGAGTATGGAATGAAAGTTACTGCCCTTTATTTTGTTACTGAAGTAGGAATTGCTATTGATGAGTTTGCTGCTCATGATTGA
Protein sequence

>MsG0380016012.01.T01

MGIGPNSHFCFPHIGGVHEEVFEVLKSWIELGKIYLFRLHVQIGVRVLLEALDMYGFANWNGVAEHVGTKSESQCIGHYNDVYLNSPSFPLPDLSYSMGKNKEELIAMAKGDKLNKEFPPNAELTLKEPPLSYGINLNILRWLPLMGIIYMGDMNSASDKALSRTIKKASNVSQNNDVVTAEGMFSEYGMKVTALYFVTEVGIAIDEFAAHD*