AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016938.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016938.01.T01 MTR_3g098560 99.745 392 1 0 1 392 1 392 0.0 811
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016938.01.T01 AT5G61850 65.594 404 115 7 1 386 1 398 3.10e-160 457
MsG0380016938.01.T01 AT5G61850 64.951 408 115 8 1 386 1 402 1.04e-157 451

Find 122 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCTGAGAAGAGGGTTTA+AGG 0.220415 3:+89640886 MsG0380016938.01.T01:CDS
ATGTCGTGAGTTCTTGATTC+AGG 0.260029 3:+89640125 MsG0380016938.01.T01:CDS
GGTAACCTTGCTGGGTAATA+AGG 0.267462 3:-89639160 None:intergenic
GAGGCGGTGGGAAGCGGAGG+AGG 0.273663 3:+89639859 MsG0380016938.01.T01:CDS
AGTTCTCTTGGTAACCTTGC+TGG 0.317522 3:-89639169 None:intergenic
CACATCCTCGTCTTTCAATA+TGG 0.331865 3:+89641008 MsG0380016938.01.T01:CDS
AGGTGACAAATCAGGTATTT+AGG 0.336960 3:+89640765 MsG0380016938.01.T01:intron
CCATTCATTGTGACAGAGCC+TGG 0.376080 3:+89640045 MsG0380016938.01.T01:CDS
ACGGCATCAAAGCTGCCATT+AGG 0.383226 3:+89639368 MsG0380016938.01.T01:CDS
GAGAAGGAGGCGGTGGGAAG+CGG 0.385452 3:+89639853 MsG0380016938.01.T01:CDS
GACTGCGTAGTCGAGAAGTT+GGG 0.398890 3:-89639116 None:intergenic
CGGCATCAAAGCTGCCATTA+GGG 0.401490 3:+89639369 MsG0380016938.01.T01:CDS
GAAGCGGAGGAGGGAGTACT+TGG 0.416484 3:+89639869 MsG0380016938.01.T01:CDS
AAACGCCGGGGTCTTCTCTC+TGG 0.419881 3:+89639424 MsG0380016938.01.T01:CDS
CCAGGCTCTGTCACAATGAA+TGG 0.421125 3:-89640045 None:intergenic
AAGGAGGCGGTGGGAAGCGG+AGG 0.424426 3:+89639856 MsG0380016938.01.T01:CDS
GCGTCTCCGTTCAGCCCTAA+TGG 0.426738 3:-89639383 None:intergenic
TCCAACCCTCCAAGTTCTCT+TGG 0.430987 3:-89639181 None:intergenic
TATTCTTAATTAAGGTTTGT+CGG 0.438516 3:+89639810 MsG0380016938.01.T01:intron
TTGCCACGTGCAACTTCCCC+AGG 0.439306 3:-89640063 None:intergenic
GATTGAAGTCTAACTTAGAA+AGG 0.448211 3:-89641121 None:intergenic
ATGGTATAGTATACCTTGGT+AGG 0.452240 3:-89640183 None:intergenic
TTAAGGTTTGTCGGAGGAGC+CGG 0.457376 3:+89639819 MsG0380016938.01.T01:intron
GCAAGGTTACCAAGAGAACT+TGG 0.476055 3:+89639172 MsG0380016938.01.T01:CDS
AAGGAGAAGGATGAAGATGA+AGG 0.477090 3:+89639936 MsG0380016938.01.T01:CDS
AGAAGAGGGTTTAAGGAAAG+AGG 0.480856 3:+89640893 MsG0380016938.01.T01:CDS
TGACTGCGTAGTCGAGAAGT+TGG 0.482736 3:-89639117 None:intergenic
GCTTCAAGCTCCGTCTCTGT+TGG 0.485056 3:+89641085 MsG0380016938.01.T01:CDS
CAATAGCTGCACGTCAAGGA+TGG 0.486959 3:+89640963 MsG0380016938.01.T01:CDS
GAAAGAGGCAGCAAATAAGA+AGG 0.487031 3:+89639917 MsG0380016938.01.T01:CDS
ACAGCGAGAGAAGGAGGCGG+TGG 0.487501 3:+89639846 MsG0380016938.01.T01:CDS
TGCGTGGGTCCCACTTGAAT+AGG 0.494961 3:-89639063 None:intergenic
TCCTTCTCTCGCTGTACCAC+CGG 0.501299 3:-89639838 None:intergenic
TAAGGTGACGGAGCAGTTGA+AGG 0.502859 3:-89639142 None:intergenic
AGGAGAAGGATGAAGATGAA+GGG 0.505804 3:+89639937 MsG0380016938.01.T01:CDS
GAGAGCGTCAAGAGCGTTGG+TGG 0.506027 3:-89639452 None:intergenic
TTGAGTGTAGGTGACAAATC+AGG 0.506470 3:+89640757 MsG0380016938.01.T01:intron
AGGCTGGCGGTGAATGCGTC+GGG 0.507213 3:-89639043 None:intergenic
GTTCTCTTGGTAACCTTGCT+GGG 0.507232 3:-89639168 None:intergenic
TGAAGAGGAAATTAAACGCC+GGG 0.509415 3:+89639411 MsG0380016938.01.T01:CDS
TTTCGTTGGGATCTTCTCGT+TGG 0.511591 3:+89639337 MsG0380016938.01.T01:CDS
AGTATCTGATTCCATAAGCT+TGG 0.513074 3:-89639213 None:intergenic
ATTGCATTGTTTAGATGAAG+AGG 0.515227 3:+89640856 MsG0380016938.01.T01:CDS
GAATGAAGAAGGAGATGAGG+AGG 0.516159 3:+89639978 MsG0380016938.01.T01:CDS
GTTTAATTTCCTCTTCATCA+AGG 0.516212 3:-89639405 None:intergenic
CTCTCCGCGTTCCTTAGCAA+TGG 0.516636 3:-89640154 None:intergenic
TGGGTCCCACTTGAATAGGC+TGG 0.516787 3:-89639059 None:intergenic
GGAGAAGGATGAAGATGAAG+GGG 0.519390 3:+89639938 MsG0380016938.01.T01:CDS
ACCAAGAGAACTTGGAGGGT+TGG 0.520875 3:+89639180 MsG0380016938.01.T01:CDS
AGGCGGTGGGAAGCGGAGGA+GGG 0.524644 3:+89639860 MsG0380016938.01.T01:CDS
CATTCATTGTGACAGAGCCT+GGG 0.529014 3:+89640046 MsG0380016938.01.T01:CDS
TTGGGAGGTAGCCGTGGTGG+AGG 0.529312 3:+89639888 MsG0380016938.01.T01:CDS
CTTCTCGTTGGAGAACGTTA+CGG 0.539245 3:+89639349 MsG0380016938.01.T01:CDS
ATGAAGGGGACTGGTGATCA+TGG 0.540345 3:+89639952 MsG0380016938.01.T01:CDS
TGAGAATGAAGAAGGAGATG+AGG 0.540691 3:+89639975 MsG0380016938.01.T01:CDS
AGGATGAAGATGAAGGGGAC+TGG 0.542061 3:+89639943 MsG0380016938.01.T01:CDS
AAGAGAACTTGGAGGGTTGG+AGG 0.545242 3:+89639183 MsG0380016938.01.T01:CDS
AGAGAGAGCGTCAAGAGCGT+TGG 0.546844 3:-89639455 None:intergenic
GCCGGTGGTACAGCGAGAGA+AGG 0.548302 3:+89639837 MsG0380016938.01.T01:CDS
GGACGGAGAGGTGGAGCTGT+TGG 0.549389 3:-89639094 None:intergenic
GAGGAGAGAACGTTGGTGCA+TGG 0.550139 3:+89640912 MsG0380016938.01.T01:CDS
AGAAGTTGGGGACGGAGAGG+TGG 0.556007 3:-89639103 None:intergenic
AGGTGGAGCTGTTGGTAGGA+CGG 0.556396 3:-89639086 None:intergenic
ACGGAGACGCCTTGATGAAG+AGG 0.562424 3:+89639396 MsG0380016938.01.T01:CDS
TACTTGGGAGGTAGCCGTGG+TGG 0.568788 3:+89639885 MsG0380016938.01.T01:CDS
GAAGTCTAACTTAGAAAGGA+AGG 0.570913 3:-89641117 None:intergenic
GCTGTTGGTAGGACGGTGCG+TGG 0.571008 3:-89639079 None:intergenic
GAAGATAACATCAGTGGTGG+GGG 0.573896 3:+89640003 MsG0380016938.01.T01:CDS
AAGAAGATAACATCAGTGGT+GGG 0.574442 3:+89640001 MsG0380016938.01.T01:CDS
TAGGCTGGCGGTGAATGCGT+CGG 0.576957 3:-89639044 None:intergenic
GAGTACTTGGGAGGTAGCCG+TGG 0.579508 3:+89639882 MsG0380016938.01.T01:CDS
AGAAGATAACATCAGTGGTG+GGG 0.583595 3:+89640002 MsG0380016938.01.T01:CDS
CGTGCAGCTATTGCTACAAG+TGG 0.585606 3:-89640953 None:intergenic
GGTGGTACAGCGAGAGAAGG+AGG 0.587891 3:+89639840 MsG0380016938.01.T01:CDS
GCGGCGAAGATAGCAGAGCT+TGG 0.589296 3:+89639241 MsG0380016938.01.T01:CDS
AATAGCTGCACGTCAAGGAT+GGG 0.590285 3:+89640964 MsG0380016938.01.T01:CDS
TCAGGTTCAAGCCATTGCTA+AGG 0.593270 3:+89640143 MsG0380016938.01.T01:CDS
TGGTGGAGGAGAGAAGAAAG+AGG 0.595087 3:+89639902 MsG0380016938.01.T01:CDS
ACTGCGTAGTCGAGAAGTTG+GGG 0.596538 3:-89639115 None:intergenic
CTTTCTTCTCTCCTCCACCA+CGG 0.599475 3:-89639899 None:intergenic
GAAGAAGATAACATCAGTGG+TGG 0.599484 3:+89640000 MsG0380016938.01.T01:CDS
GTATCAAATGAGCTGAGAAG+AGG 0.605442 3:+89640878 MsG0380016938.01.T01:CDS
CAGCGAGAGAAGGAGGCGGT+GGG 0.606592 3:+89639847 MsG0380016938.01.T01:CDS
TGGTATAGTATACCTTGGTA+GGG 0.608009 3:-89640182 None:intergenic
AGGTTTGTCGGAGGAGCCGG+TGG 0.610012 3:+89639822 MsG0380016938.01.T01:intron
TCACCGCCAGCCTATTCAAG+TGG 0.610527 3:+89639053 MsG0380016938.01.T01:CDS
GGAGAGGTGGAGCTGTTGGT+AGG 0.611893 3:-89639090 None:intergenic
GTCAGCTTTGTCATGCTGAG+AGG 0.612831 3:+89641050 MsG0380016938.01.T01:CDS
GGCAGCAAATAAGAAGGAGA+AGG 0.613195 3:+89639923 MsG0380016938.01.T01:CDS
TATCAAATGAGCTGAGAAGA+GGG 0.613772 3:+89640879 MsG0380016938.01.T01:CDS
CGGAGGAGGGAGTACTTGGG+AGG 0.615428 3:+89639873 MsG0380016938.01.T01:CDS
CTTGACGCTCTCTCTCAAGA+AGG 0.618687 3:+89639463 MsG0380016938.01.T01:CDS
CTGTTGGTAGGACGGTGCGT+GGG 0.619175 3:-89639078 None:intergenic
CGTCACCTTATTACCCAGCA+AGG 0.621883 3:+89639155 MsG0380016938.01.T01:CDS
GATCATGGTGAGAATGAAGA+AGG 0.622763 3:+89639967 MsG0380016938.01.T01:CDS
AAGCGGAGGAGGGAGTACTT+GGG 0.624155 3:+89639870 MsG0380016938.01.T01:CDS
GTAGCAATAGCTGCACGTCA+AGG 0.625576 3:+89640959 MsG0380016938.01.T01:CDS
CTTGCTGGGTAATAAGGTGA+CGG 0.634053 3:-89639154 None:intergenic
GTCTAACTTAGAAAGGAAGG+TGG 0.634743 3:-89641114 None:intergenic
GTGGGCAGTTCCAACAGAGA+CGG 0.635033 3:-89641095 None:intergenic
GGTTACCAAGAGAACTTGGA+GGG 0.636203 3:+89639176 MsG0380016938.01.T01:CDS
ATGAAGAGGAAATTAAACGC+CGG 0.636563 3:+89639410 MsG0380016938.01.T01:CDS
AAGCTGCCATTAGGGCTGAA+CGG 0.643172 3:+89639377 MsG0380016938.01.T01:CDS
CGGAGAGAAATGCCCTACCA+AGG 0.646303 3:+89640170 MsG0380016938.01.T01:CDS
TCGAGAAGTTGGGGACGGAG+AGG 0.648809 3:-89639106 None:intergenic
CACCGCCAGCCTATTCAAGT+GGG 0.649274 3:+89639054 MsG0380016938.01.T01:CDS
CAAGCCATTGCTAAGGAACG+CGG 0.651128 3:+89640150 MsG0380016938.01.T01:CDS
TCTAACTTAGAAAGGAAGGT+GGG 0.652391 3:-89641113 None:intergenic
GAGCACGTTGGTGGACATGA+AGG 0.653688 3:+89639273 MsG0380016938.01.T01:CDS
ATTCATTGTGACAGAGCCTG+GGG 0.659933 3:+89640047 MsG0380016938.01.T01:CDS
GAGCCTGGGGAAGTTGCACG+TGG 0.664392 3:+89640060 MsG0380016938.01.T01:CDS
AGGTTACCAAGAGAACTTGG+AGG 0.664565 3:+89639175 MsG0380016938.01.T01:CDS
TCTTAATTAAGGTTTGTCGG+AGG 0.666720 3:+89639813 MsG0380016938.01.T01:intron
AAGGAAAGAGGAGAGAACGT+TGG 0.674755 3:+89640905 MsG0380016938.01.T01:CDS
GTCCCACTTGAATAGGCTGG+CGG 0.674932 3:-89639056 None:intergenic
CGTAGTCGAGAAGTTGGGGA+CGG 0.679261 3:-89639111 None:intergenic
GAGGAAGAAGATAACATCAG+TGG 0.681977 3:+89639997 MsG0380016938.01.T01:CDS
GGTACAGCGAGAGAAGGAGG+CGG 0.707868 3:+89639843 MsG0380016938.01.T01:CDS
ACGTACCATATTGAAAGACG+AGG 0.718589 3:-89641013 None:intergenic
GAAGAGGAAATTAAACGCCG+GGG 0.750879 3:+89639412 MsG0380016938.01.T01:CDS
TATCACCAGAGAGAAGACCC+CGG 0.770792 3:-89639429 None:intergenic
TGGAATCAGATACTACACTG+CGG 0.816299 3:+89639222 MsG0380016938.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACTATATTCTTAATTA+AGG + Chr3:89639802-89639821 MsG0380016938.01.T01:intron 10.0%
!! TATACAAATAAAAAATTGTT+AGG - Chr3:89639618-89639637 None:intergenic 10.0%
!!! TTTTTATTTGTATATGAAAA+TGG + Chr3:89639624-89639643 MsG0380016938.01.T01:intron 10.0%
!! ATTATTAGTACAAATATAAG+TGG - Chr3:89639494-89639513 None:intergenic 15.0%
!! TTATTCATTCATTTATTATC+CGG + Chr3:89640515-89640534 MsG0380016938.01.T01:intron 15.0%
!! AAAGTAGTATCAAAATTTCA+TGG - Chr3:89640631-89640650 None:intergenic 20.0%
!! AATAAAACAAACAAAGTGTA+CGG - Chr3:89640500-89640519 None:intergenic 20.0%
!! AGTACATGATTAATAACTTT+AGG + Chr3:89640710-89640729 MsG0380016938.01.T01:intron 20.0%
!! TATTCTTAATTAAGGTTTGT+CGG + Chr3:89639810-89639829 MsG0380016938.01.T01:intron 20.0%
!!! TCATGGATATATTTTTGATT+GGG - Chr3:89640614-89640633 None:intergenic 20.0%
!!! TTCATGGATATATTTTTGAT+TGG - Chr3:89640615-89640634 None:intergenic 20.0%
!!! TTGATTATATTTGATAACTC+AGG - Chr3:89639768-89639787 None:intergenic 20.0%
! AACTTTGTAATGTTGTTAGT+AGG - Chr3:89640211-89640230 None:intergenic 25.0%
! ACTTTGTAATGTTGTTAGTA+GGG - Chr3:89640210-89640229 None:intergenic 25.0%
! TCATTAATTACTTTGAGTGT+AGG + Chr3:89640745-89640764 MsG0380016938.01.T01:intron 25.0%
! TTTGATACTACTTTGTGTAT+GGG + Chr3:89640637-89640656 MsG0380016938.01.T01:intron 25.0%
!! TTTTGATACTACTTTGTGTA+TGG + Chr3:89640636-89640655 MsG0380016938.01.T01:intron 25.0%
ATTGCATTGTTTAGATGAAG+AGG + Chr3:89640856-89640875 MsG0380016938.01.T01:CDS 30.0%
TTTAGGTATGCAAAAAAAGC+TGG + Chr3:89640782-89640801 MsG0380016938.01.T01:CDS 30.0%
! ATGCATGCATGATTTTGTTA+TGG - Chr3:89640554-89640573 None:intergenic 30.0%
! CATGCATGCATTTTATTATC+CGG + Chr3:89640563-89640582 MsG0380016938.01.T01:intron 30.0%
! GTTTAATTTCCTCTTCATCA+AGG - Chr3:89639408-89639427 None:intergenic 30.0%
!! TTGATTGGGATTTGTTATGA+GGG - Chr3:89640600-89640619 None:intergenic 30.0%
!! TTTGATTGGGATTTGTTATG+AGG - Chr3:89640601-89640620 None:intergenic 30.0%
AACACAACACAAAATCTGAC+TGG - Chr3:89640338-89640357 None:intergenic 35.0%
AAGAAGATAACATCAGTGGT+GGG + Chr3:89640001-89640020 MsG0380016938.01.T01:CDS 35.0%
AGGTGACAAATCAGGTATTT+AGG + Chr3:89640765-89640784 MsG0380016938.01.T01:intron 35.0%
AGTATCTGATTCCATAAGCT+TGG - Chr3:89639216-89639235 None:intergenic 35.0%
ATATGAAAATCCCAGTGGAA+TGG - Chr3:89640467-89640486 None:intergenic 35.0%
ATGAAGAGGAAATTAAACGC+CGG + Chr3:89639410-89639429 MsG0380016938.01.T01:CDS 35.0%
ATGGTATAGTATACCTTGGT+AGG - Chr3:89640186-89640205 None:intergenic 35.0%
CTTTGTGTATGGGATAGTAT+AGG + Chr3:89640647-89640666 MsG0380016938.01.T01:intron 35.0%
TATCAAATGAGCTGAGAAGA+GGG + Chr3:89640879-89640898 MsG0380016938.01.T01:CDS 35.0%
TATGAAAATCCCAGTGGAAT+GGG - Chr3:89640466-89640485 None:intergenic 35.0%
TCTTAATTAAGGTTTGTCGG+AGG + Chr3:89639813-89639832 MsG0380016938.01.T01:intron 35.0%
TGATCATATGAAAATCCCAG+TGG - Chr3:89640472-89640491 None:intergenic 35.0%
TGGTATAGTATACCTTGGTA+GGG - Chr3:89640185-89640204 None:intergenic 35.0%
TGTATGGGATAGTATAGGAT+AGG + Chr3:89640652-89640671 MsG0380016938.01.T01:intron 35.0%
!! GCAAGAAAGTACTGTTCAAA+CGG - Chr3:89640384-89640403 None:intergenic 35.0%
!! TTATGGTTCTAGTTTGTGAC+CGG - Chr3:89640537-89640556 None:intergenic 35.0%
AAGGAGAAGGATGAAGATGA+AGG + Chr3:89639936-89639955 MsG0380016938.01.T01:CDS 40.0%
ACGTACCATATTGAAAGACG+AGG - Chr3:89641016-89641035 None:intergenic 40.0%
AGAAGAGGGTTTAAGGAAAG+AGG + Chr3:89640893-89640912 MsG0380016938.01.T01:CDS 40.0%
AGAAGATAACATCAGTGGTG+GGG + Chr3:89640002-89640021 MsG0380016938.01.T01:CDS 40.0%
AGGAGAAGGATGAAGATGAA+GGG + Chr3:89639937-89639956 MsG0380016938.01.T01:CDS 40.0%
ATGAAAATCCCAGTGGAATG+GGG - Chr3:89640465-89640484 None:intergenic 40.0%
ATGTCGTGAGTTCTTGATTC+AGG + Chr3:89640125-89640144 MsG0380016938.01.T01:CDS 40.0%
CACATCCTCGTCTTTCAATA+TGG + Chr3:89641008-89641027 MsG0380016938.01.T01:CDS 40.0%
GAAAGAGGCAGCAAATAAGA+AGG + Chr3:89639917-89639936 MsG0380016938.01.T01:CDS 40.0%
GAAGAAGATAACATCAGTGG+TGG + Chr3:89640000-89640019 MsG0380016938.01.T01:CDS 40.0%
GAGGAAGAAGATAACATCAG+TGG + Chr3:89639997-89640016 MsG0380016938.01.T01:CDS 40.0%
GATCATGGTGAGAATGAAGA+AGG + Chr3:89639967-89639986 MsG0380016938.01.T01:CDS 40.0%
GGATAGTATAGGATAGGATG+GGG + Chr3:89640658-89640677 MsG0380016938.01.T01:intron 40.0%
GGGATAGTATAGGATAGGAT+GGG + Chr3:89640657-89640676 MsG0380016938.01.T01:intron 40.0%
GTAATGTTGTTAGTAGGGCA+TGG - Chr3:89640205-89640224 None:intergenic 40.0%
GTATCAAATGAGCTGAGAAG+AGG + Chr3:89640878-89640897 MsG0380016938.01.T01:CDS 40.0%
TGAAGAGGAAATTAAACGCC+GGG + Chr3:89639411-89639430 MsG0380016938.01.T01:CDS 40.0%
TGAGAATGAAGAAGGAGATG+AGG + Chr3:89639975-89639994 MsG0380016938.01.T01:CDS 40.0%
TGGAATCAGATACTACACTG+CGG + Chr3:89639222-89639241 MsG0380016938.01.T01:CDS 40.0%
TGGGATAGTATAGGATAGGA+TGG + Chr3:89640656-89640675 MsG0380016938.01.T01:intron 40.0%
TTGAGTGTAGGTGACAAATC+AGG + Chr3:89640757-89640776 MsG0380016938.01.T01:intron 40.0%
! GAGGAACTTTTCCAAGCTTA+TGG + Chr3:89639202-89639221 MsG0380016938.01.T01:CDS 40.0%
! TGCACGTAGTGTCTCATTTT+TGG - Chr3:89640827-89640846 None:intergenic 40.0%
!! CAAAGCTGACGAAGTTTTGT+TGG - Chr3:89641040-89641059 None:intergenic 40.0%
AAGGAAAGAGGAGAGAACGT+TGG + Chr3:89640905-89640924 MsG0380016938.01.T01:CDS 45.0%
AATAGCTGCACGTCAAGGAT+GGG + Chr3:89640964-89640983 MsG0380016938.01.T01:CDS 45.0%
ACTGTTCAAACGGTTCGTGA+AGG - Chr3:89640374-89640393 None:intergenic 45.0%
AGGTTACCAAGAGAACTTGG+AGG + Chr3:89639175-89639194 MsG0380016938.01.T01:CDS 45.0%
ATTCATTGTGACAGAGCCTG+GGG + Chr3:89640047-89640066 MsG0380016938.01.T01:CDS 45.0%
CATTCATTGTGACAGAGCCT+GGG + Chr3:89640046-89640065 MsG0380016938.01.T01:CDS 45.0%
CTTCTCGTTGGAGAACGTTA+CGG + Chr3:89639349-89639368 MsG0380016938.01.T01:CDS 45.0%
CTTGCTGGGTAATAAGGTGA+CGG - Chr3:89639157-89639176 None:intergenic 45.0%
GAAGAGGAAATTAAACGCCG+GGG + Chr3:89639412-89639431 MsG0380016938.01.T01:CDS 45.0%
GAAGATAACATCAGTGGTGG+GGG + Chr3:89640003-89640022 MsG0380016938.01.T01:CDS 45.0%
GAATGAAGAAGGAGATGAGG+AGG + Chr3:89639978-89639997 MsG0380016938.01.T01:CDS 45.0%
GCAAGGTTACCAAGAGAACT+TGG + Chr3:89639172-89639191 MsG0380016938.01.T01:CDS 45.0%
GGAGAAGGATGAAGATGAAG+GGG + Chr3:89639938-89639957 MsG0380016938.01.T01:CDS 45.0%
GGCAGCAAATAAGAAGGAGA+AGG + Chr3:89639923-89639942 MsG0380016938.01.T01:CDS 45.0%
GGGCATGGTATAGTATACCT+TGG - Chr3:89640190-89640209 None:intergenic 45.0%
GGTAACCTTGCTGGGTAATA+AGG - Chr3:89639163-89639182 None:intergenic 45.0%
GGTTACCAAGAGAACTTGGA+GGG + Chr3:89639176-89639195 MsG0380016938.01.T01:CDS 45.0%
GTTGCACGTGGCAAAAAGAA+CGG + Chr3:89640072-89640091 MsG0380016938.01.T01:CDS 45.0%
TATGAGGGCAAGCTAAGATC+CGG - Chr3:89640585-89640604 None:intergenic 45.0%
TCAGGTTCAAGCCATTGCTA+AGG + Chr3:89640143-89640162 MsG0380016938.01.T01:CDS 45.0%
TGAGCTGAGAAGAGGGTTTA+AGG + Chr3:89640886-89640905 MsG0380016938.01.T01:CDS 45.0%
TTTCGTTGGGATCTTCTCGT+TGG + Chr3:89639337-89639356 MsG0380016938.01.T01:CDS 45.0%
! AGTTCTCTTGGTAACCTTGC+TGG - Chr3:89639172-89639191 None:intergenic 45.0%
! CCTCTCGCAGATTTTTCGTT+GGG + Chr3:89639324-89639343 MsG0380016938.01.T01:CDS 45.0%
! GTTCTCTTGGTAACCTTGCT+GGG - Chr3:89639171-89639190 None:intergenic 45.0%
! TTTTACAGTGAGCACGTTGG+TGG + Chr3:89639264-89639283 MsG0380016938.01.T01:CDS 45.0%
!! TGGTTTTACAGTGAGCACGT+TGG + Chr3:89639261-89639280 MsG0380016938.01.T01:CDS 45.0%
AAAATCCCAGTGGAATGGGG+AGG - Chr3:89640462-89640481 None:intergenic 50.0%
AACCCATTAGGAGAGTCCCT+GGG - Chr3:89640436-89640455 None:intergenic 50.0%
AAGAGAACTTGGAGGGTTGG+AGG + Chr3:89639183-89639202 MsG0380016938.01.T01:CDS 50.0%
AAGCTGCCATTAGGGCTGAA+CGG + Chr3:89639377-89639396 MsG0380016938.01.T01:CDS 50.0%
ACCAAGAGAACTTGGAGGGT+TGG + Chr3:89639180-89639199 MsG0380016938.01.T01:CDS 50.0%
ACGGCATCAAAGCTGCCATT+AGG + Chr3:89639368-89639387 MsG0380016938.01.T01:CDS 50.0%
ACGTGGCAAAAAGAACGGTC+TGG + Chr3:89640077-89640096 MsG0380016938.01.T01:CDS 50.0%
ACTGCGTAGTCGAGAAGTTG+GGG - Chr3:89639118-89639137 None:intergenic 50.0%
AGGATGAAGATGAAGGGGAC+TGG + Chr3:89639943-89639962 MsG0380016938.01.T01:CDS 50.0%
CAAGCCATTGCTAAGGAACG+CGG + Chr3:89640150-89640169 MsG0380016938.01.T01:CDS 50.0%
CAATAGCTGCACGTCAAGGA+TGG + Chr3:89640963-89640982 MsG0380016938.01.T01:CDS 50.0%
CCAGGCTCTGTCACAATGAA+TGG - Chr3:89640048-89640067 None:intergenic 50.0%
CCATTCATTGTGACAGAGCC+TGG + Chr3:89640045-89640064 MsG0380016938.01.T01:CDS 50.0%
CCCAACGAAAAATCTGCGAG+AGG - Chr3:89639327-89639346 None:intergenic 50.0%
CGGCATCAAAGCTGCCATTA+GGG + Chr3:89639369-89639388 MsG0380016938.01.T01:CDS 50.0%
CGTCACCTTATTACCCAGCA+AGG + Chr3:89639155-89639174 MsG0380016938.01.T01:CDS 50.0%
CGTGCAGCTATTGCTACAAG+TGG - Chr3:89640956-89640975 None:intergenic 50.0%
CTTGACGCTCTCTCTCAAGA+AGG + Chr3:89639463-89639482 MsG0380016938.01.T01:CDS 50.0%
CTTTCTTCTCTCCTCCACCA+CGG - Chr3:89639902-89639921 None:intergenic 50.0%
GACTGCGTAGTCGAGAAGTT+GGG - Chr3:89639119-89639138 None:intergenic 50.0%
GTAGCAATAGCTGCACGTCA+AGG + Chr3:89640959-89640978 MsG0380016938.01.T01:CDS 50.0%
GTGTTCGGATGAACGTGTCA+CGG - Chr3:89640406-89640425 None:intergenic 50.0%
TATCACCAGAGAGAAGACCC+CGG - Chr3:89639432-89639451 None:intergenic 50.0%
TCCAACCCTCCAAGTTCTCT+TGG - Chr3:89639184-89639203 None:intergenic 50.0%
TGACTGCGTAGTCGAGAAGT+TGG - Chr3:89639120-89639139 None:intergenic 50.0%
TGGTGGAGGAGAGAAGAAAG+AGG + Chr3:89639902-89639921 MsG0380016938.01.T01:CDS 50.0%
TTAAGGTTTGTCGGAGGAGC+CGG + Chr3:89639819-89639838 MsG0380016938.01.T01:intron 50.0%
! ATGAAGGGGACTGGTGATCA+TGG + Chr3:89639952-89639971 MsG0380016938.01.T01:CDS 50.0%
! GCCTCTCGCAGATTTTTCGT+TGG + Chr3:89639323-89639342 MsG0380016938.01.T01:CDS 50.0%
! GTCAGCTTTGTCATGCTGAG+AGG + Chr3:89641050-89641069 MsG0380016938.01.T01:CDS 50.0%
!! TAAGGTGACGGAGCAGTTGA+AGG - Chr3:89639145-89639164 None:intergenic 50.0%
ACGGAGACGCCTTGATGAAG+AGG + Chr3:89639396-89639415 MsG0380016938.01.T01:CDS 55.0%
ATGGGGAGGTGGAACCCATT+AGG - Chr3:89640448-89640467 None:intergenic 55.0%
CACCGCCAGCCTATTCAAGT+GGG + Chr3:89639054-89639073 MsG0380016938.01.T01:CDS 55.0%
CGGAGAGAAATGCCCTACCA+AGG + Chr3:89640170-89640189 MsG0380016938.01.T01:CDS 55.0%
CGTAGTCGAGAAGTTGGGGA+CGG - Chr3:89639114-89639133 None:intergenic 55.0%
CTCTCCGCGTTCCTTAGCAA+TGG - Chr3:89640157-89640176 None:intergenic 55.0%
GAACCCATTAGGAGAGTCCC+TGG - Chr3:89640437-89640456 None:intergenic 55.0%
GACCCAGGGACTCTCCTAAT+GGG + Chr3:89640431-89640450 MsG0380016938.01.T01:intron 55.0%
GAGGAGAGAACGTTGGTGCA+TGG + Chr3:89640912-89640931 MsG0380016938.01.T01:CDS 55.0%
GCTTCAAGCTCCGTCTCTGT+TGG + Chr3:89641085-89641104 MsG0380016938.01.T01:CDS 55.0%
GTCCCACTTGAATAGGCTGG+CGG - Chr3:89639059-89639078 None:intergenic 55.0%
GTGGGCAGTTCCAACAGAGA+CGG - Chr3:89641098-89641117 None:intergenic 55.0%
TCACCGCCAGCCTATTCAAG+TGG + Chr3:89639053-89639072 MsG0380016938.01.T01:CDS 55.0%
TCCTTCTCTCGCTGTACCAC+CGG - Chr3:89639841-89639860 None:intergenic 55.0%
TGCGTGGGTCCCACTTGAAT+AGG - Chr3:89639066-89639085 None:intergenic 55.0%
TGGGTCCCACTTGAATAGGC+TGG - Chr3:89639062-89639081 None:intergenic 55.0%
TTCCACCTCCCCATTCCACT+GGG + Chr3:89640454-89640473 MsG0380016938.01.T01:intron 55.0%
! AGGTGGAGCTGTTGGTAGGA+CGG - Chr3:89639089-89639108 None:intergenic 55.0%
! GAGCACGTTGGTGGACATGA+AGG + Chr3:89639273-89639292 MsG0380016938.01.T01:CDS 55.0%
!! AAGCGGAGGAGGGAGTACTT+GGG + Chr3:89639870-89639889 MsG0380016938.01.T01:CDS 55.0%
!! AGAGAGAGCGTCAAGAGCGT+TGG - Chr3:89639458-89639477 None:intergenic 55.0%
AAACGCCGGGGTCTTCTCTC+TGG + Chr3:89639424-89639443 MsG0380016938.01.T01:CDS 60.0%
AGAAGTTGGGGACGGAGAGG+TGG - Chr3:89639106-89639125 None:intergenic 60.0%
ATCCCAGTGGAATGGGGAGG+TGG - Chr3:89640459-89640478 None:intergenic 60.0%
ATCCGAACACGTGACGACCC+AGG + Chr3:89640416-89640435 MsG0380016938.01.T01:intron 60.0%
CGACCCAGGGACTCTCCTAA+TGG + Chr3:89640430-89640449 MsG0380016938.01.T01:intron 60.0%
GAGTACTTGGGAGGTAGCCG+TGG + Chr3:89639882-89639901 MsG0380016938.01.T01:CDS 60.0%
GCGGCGAAGATAGCAGAGCT+TGG + Chr3:89639241-89639260 MsG0380016938.01.T01:CDS 60.0%
GCGTCTCCGTTCAGCCCTAA+TGG - Chr3:89639386-89639405 None:intergenic 60.0%
GGAGAGGTGGAGCTGTTGGT+AGG - Chr3:89639093-89639112 None:intergenic 60.0%
GGTACAGCGAGAGAAGGAGG+CGG + Chr3:89639843-89639862 MsG0380016938.01.T01:CDS 60.0%
GGTGGTACAGCGAGAGAAGG+AGG + Chr3:89639840-89639859 MsG0380016938.01.T01:CDS 60.0%
GTTCCACCTCCCCATTCCAC+TGG + Chr3:89640453-89640472 MsG0380016938.01.T01:intron 60.0%
TACTTGGGAGGTAGCCGTGG+TGG + Chr3:89639885-89639904 MsG0380016938.01.T01:CDS 60.0%
TAGGCTGGCGGTGAATGCGT+CGG - Chr3:89639047-89639066 None:intergenic 60.0%
TCCCTGGGTCGTCACGTGTT+CGG - Chr3:89640421-89640440 None:intergenic 60.0%
TCCGAACACGTGACGACCCA+GGG + Chr3:89640417-89640436 MsG0380016938.01.T01:intron 60.0%
TCGAGAAGTTGGGGACGGAG+AGG - Chr3:89639109-89639128 None:intergenic 60.0%
TTGCCACGTGCAACTTCCCC+AGG - Chr3:89640066-89640085 None:intergenic 60.0%
! CTGTTGGTAGGACGGTGCGT+GGG - Chr3:89639081-89639100 None:intergenic 60.0%
!! GAAGCGGAGGAGGGAGTACT+TGG + Chr3:89639869-89639888 MsG0380016938.01.T01:CDS 60.0%
!! GAGAGCGTCAAGAGCGTTGG+TGG - Chr3:89639455-89639474 None:intergenic 60.0%
ACAGCGAGAGAAGGAGGCGG+TGG + Chr3:89639846-89639865 MsG0380016938.01.T01:CDS 65.0%
AGGCTGGCGGTGAATGCGTC+GGG - Chr3:89639046-89639065 None:intergenic 65.0%
AGGTTTGTCGGAGGAGCCGG+TGG + Chr3:89639822-89639841 MsG0380016938.01.T01:intron 65.0%
CAGCGAGAGAAGGAGGCGGT+GGG + Chr3:89639847-89639866 MsG0380016938.01.T01:CDS 65.0%
GAGAAGGAGGCGGTGGGAAG+CGG + Chr3:89639853-89639872 MsG0380016938.01.T01:CDS 65.0%
GAGCCTGGGGAAGTTGCACG+TGG + Chr3:89640060-89640079 MsG0380016938.01.T01:CDS 65.0%
GCCGGTGGTACAGCGAGAGA+AGG + Chr3:89639837-89639856 MsG0380016938.01.T01:CDS 65.0%
GGACGGAGAGGTGGAGCTGT+TGG - Chr3:89639097-89639116 None:intergenic 65.0%
TTGGGAGGTAGCCGTGGTGG+AGG + Chr3:89639888-89639907 MsG0380016938.01.T01:CDS 65.0%
! GCTGTTGGTAGGACGGTGCG+TGG - Chr3:89639082-89639101 None:intergenic 65.0%
!! CGGAGGAGGGAGTACTTGGG+AGG + Chr3:89639873-89639892 MsG0380016938.01.T01:CDS 65.0%
AAGGAGGCGGTGGGAAGCGG+AGG + Chr3:89639856-89639875 MsG0380016938.01.T01:CDS 70.0%
AGGCGGTGGGAAGCGGAGGA+GGG + Chr3:89639860-89639879 MsG0380016938.01.T01:CDS 70.0%
GAGGCGGTGGGAAGCGGAGG+AGG + Chr3:89639859-89639878 MsG0380016938.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 89639037 89641129 89639037 ID=MsG0380016938.01;Name=MsG0380016938.01
Chr3 mRNA 89639037 89641129 89639037 ID=MsG0380016938.01.T01;Parent=MsG0380016938.01;Name=MsG0380016938.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|392
Chr3 exon 89639037 89639484 89639037 ID=MsG0380016938.01.T01:exon:20560;Parent=MsG0380016938.01.T01
Chr3 exon 89639824 89640191 89639824 ID=MsG0380016938.01.T01:exon:20561;Parent=MsG0380016938.01.T01
Chr3 exon 89640767 89641129 89640767 ID=MsG0380016938.01.T01:exon:20562;Parent=MsG0380016938.01.T01
Chr3 CDS 89639037 89639484 89639037 ID=MsG0380016938.01.T01:cds;Parent=MsG0380016938.01.T01
Chr3 CDS 89639824 89640191 89639824 ID=MsG0380016938.01.T01:cds;Parent=MsG0380016938.01.T01
Chr3 CDS 89640767 89641129 89640767 ID=MsG0380016938.01.T01:cds;Parent=MsG0380016938.01.T01
Gene Sequence

>MsG0380016938.01.T01

ATGGATCCCGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTACCAACAGCTCCACCTCTCCGTCCCCAACTTCTCGACTACGCAGTCACTCCTTCAACTGCTCCGTCACCTTATTACCCAGCAAGGTTACCAAGAGAACTTGGAGGGTTGGAGGAACTTTTCCAAGCTTATGGAATCAGATACTACACTGCGGCGAAGATAGCAGAGCTTGGTTTTACAGTGAGCACGTTGGTGGACATGAAGGATGATGAGCTTGATGACATGATGAACAGCCTCTCGCAGATTTTTCGTTGGGATCTTCTCGTTGGAGAACGTTACGGCATCAAAGCTGCCATTAGGGCTGAACGGAGACGCCTTGATGAAGAGGAAATTAAACGCCGGGGTCTTCTCTCTGGTGATACCACCAACGCTCTTGACGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTACAGCGAGAGAAGGAGGCGGTGGGAAGCGGAGGAGGGAGTACTTGGGAGGTAGCCGTGGTGGAGGAGAGAAGAAAGAGGCAGCAAATAAGAAGGAGAAGGATGAAGATGAAGGGGACTGGTGATCATGGTGAGAATGAAGAAGGAGATGAGGAGGAAGAAGATAACATCAGTGGTGGGGGTGAGAGACAAAGAGAACATCCATTCATTGTGACAGAGCCTGGGGAAGTTGCACGTGGCAAAAAGAACGGTCTGGATTATCTGTTTCATCTCTATGAACAATGTCGTGAGTTCTTGATTCAGGTTCAAGCCATTGCTAAGGAACGCGGAGAGAAATGCCCTACCAAGGTGACAAATCAGGTATTTAGGTATGCAAAAAAAGCTGGAGCAAGCTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGTTATGCATTGCATTGTTTAGATGAAGAGGTATCAAATGAGCTGAGAAGAGGGTTTAAGGAAAGAGGAGAGAACGTTGGTGCATGGAGACAAGCTTGTTACAAGCCACTTGTAGCAATAGCTGCACGTCAAGGATGGGATATTGATGCAATATTCAACGCACATCCTCGTCTTTCAATATGGTACGTGCCAACAAAACTTCGTCAGCTTTGTCATGCTGAGAGGAACAGTGCTGCTGCTTCAAGCTCCGTCTCTGTTGGAACTGCCCACCTTCCTTTCTAA
Protein sequence

>MsG0380016938.01.T01

MDPDAFTASLFKWDPRTVLPTAPPLRPQLLDYAVTPSTAPSPYYPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEEIKRRGLLSGDTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGTGDHGENEEGDEEEEDNISGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGTAHLPF*