AlfalfaGEDB | MsG0380016965.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016965.01

KEGG: -
GO: GO:0003677 GO:0005634
PFAM: PF03110

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016965.01.T01	AES73046.1	79.695	394	54	5	1	386	1	376	0	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016965.01.T01	B9DI20	30.918	414	203	19	1	386	1	359	7.33E-27	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016965.01.T01	G7J3V1	79.695	394	54	5	1	386	1	376	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
MsG0380016965.01.T01	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016965.01.T01	MTR_3g099080	79.695	394	54	5	1	386	1	376	0.0	599
MsG0380016965.01.T01	MTR_8g096780	48.019	429	141	24	1	386	1	390	3.97e-89	274
MsG0380016965.01.T01	MTR_8g066240	54.000	100	46	0	40	139	5	104	5.43e-23	92.8
MsG0380016965.01.T01	MTR_7g028740	26.005	423	220	14	1	386	1	367	3.91e-19	88.2
MsG0380016965.01.T01	MTR_4g109770	44.860	107	40	4	43	140	75	171	1.76e-16	81.3
MsG0380016965.01.T01	MTR_2g461920	42.718	103	49	3	43	140	122	219	1.59e-14	75.5
MsG0380016965.01.T01	MTR_5g046670	37.864	103	55	2	43	140	194	292	2.21e-12	68.6
MsG0380016965.01.T01	MTR_7g444860	52.542	59	23	1	87	140	139	197	2.35e-12	67.8
MsG0380016965.01.T01	MTR_4g088555	45.333	75	33	2	71	140	40	111	1.81e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016965.01.T01	AT5G50670	30.918	414	203	19	1	386	1	359	7.47e-28	112
MsG0380016965.01.T01	AT5G50670	30.918	414	203	19	1	386	1	359	7.47e-28	112
MsG0380016965.01.T01	AT5G50570	30.918	414	203	19	1	386	1	359	7.47e-28	112
MsG0380016965.01.T01	AT5G50570	30.918	414	203	19	1	386	1	359	7.47e-28	112
MsG0380016965.01.T01	AT1G02065	50.000	58	25	1	83	136	170	227	4.80e-11	63.2
MsG0380016965.01.T01	AT1G27370	40.964	83	41	3	64	140	144	224	5.75e-11	63.9
MsG0380016965.01.T01	AT1G27370	40.964	83	41	3	64	140	144	224	6.39e-11	63.9
MsG0380016965.01.T01	AT1G27370	40.964	83	41	3	64	140	144	224	6.39e-11	63.9
MsG0380016965.01.T01	AT1G27370	40.964	83	41	3	64	140	144	224	6.39e-11	63.9
MsG0380016965.01.T01	AT1G27370	40.964	83	41	3	64	140	144	224	6.39e-11	63.9

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Find 108 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATAACTAAGTAGTCC+AGG	0.551429	3:+90076391	None:intergenic
AAAGCACCTTCTTGGGATTT+GGG	0.187536	3:-90079960	MsG0380016965.01.T01:CDS
AAAGGGCTACCATTAGAGCA+AGG	0.664206	3:-90077582	MsG0380016965.01.T01:CDS
AAATTTCTATTCCCATTGAT+AGG	0.308664	3:+90076472	None:intergenic
AACTTGAAAAGGGTAGCAAC+TGG	0.449000	3:+90077017	None:intergenic
AAGCACCTTCTTGGGATTTG+GGG	0.465651	3:-90079959	MsG0380016965.01.T01:CDS
AAGCTTCTATAAAGTTACGG+TGG	0.649475	3:+90077897	None:intergenic
AAGGAGTGTTGGTCCCAAAT+GGG	0.554973	3:-90076574	MsG0380016965.01.T01:CDS
AAGTTGCTTCCCTTCTCCAT+AGG	0.412844	3:+90076856	None:intergenic
AATAGCTTTGAGTCCATGGA+AGG	0.603284	3:-90076593	MsG0380016965.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCATCTTTAAGTAATCGA+TGG	+	Chr3:90078647-90078666	None:intergenic	30.0%
ATCTAGGCATATATGCAAAT+GGG	+	Chr3:90077967-90077986	None:intergenic	30.0%
ATGAAAGAAAAAGAAGCTGT+AGG	-	Chr3:90077784-90077803	MsG0380016965.01.T01:intron	30.0%
ATGAGGAGAAAAGAAAAACT+AGG	-	Chr3:90079938-90079957	MsG0380016965.01.T01:CDS	30.0%
ATGGAAGAATCAAACAGATT+TGG	-	Chr3:90076364-90076383	MsG0380016965.01.T01:three_prime_UTR	30.0%
ATTACCCAACATAGAAACAA+TGG	-	Chr3:90076345-90076364	MsG0380016965.01.T01:three_prime_UTR	30.0%
CAAAATCTCGATGAAATATC+AGG	+	Chr3:90078415-90078434	None:intergenic	30.0%
CATACTACATTTATTCTACG+TGG	+	Chr3:90078768-90078787	None:intergenic	30.0%
CATGAAGGAAATTAAGATTC+AGG	+	Chr3:90077736-90077755	None:intergenic	30.0%
CCAACATTTAATGCTTTCAT+TGG	-	Chr3:90078576-90078595	MsG0380016965.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	90076289	90079997	90076289	ID=MsG0380016965.01;Name=MsG0380016965.01
Chr3	mRNA	90076289	90079997	90076289	ID=MsG0380016965.01.T01;Parent=MsG0380016965.01;Name=MsG0380016965.01.T01;_AED=0.35;_eAED=0.44;_QI=0\|0\|0.25\|1\|1\|1\|4\|189\|386
Chr3	exon	90076289	90077043	90076289	ID=MsG0380016965.01.T01:exon:25271;Parent=MsG0380016965.01.T01
Chr3	exon	90077565	90077647	90077565	ID=MsG0380016965.01.T01:exon:25270;Parent=MsG0380016965.01.T01
Chr3	exon	90077824	90077928	90077824	ID=MsG0380016965.01.T01:exon:25269;Parent=MsG0380016965.01.T01
Chr3	exon	90079591	90079997	90079591	ID=MsG0380016965.01.T01:exon:25268;Parent=MsG0380016965.01.T01
Chr3	CDS	90079591	90079997	90079591	ID=MsG0380016965.01.T01:cds;Parent=MsG0380016965.01.T01
Chr3	CDS	90077824	90077928	90077824	ID=MsG0380016965.01.T01:cds;Parent=MsG0380016965.01.T01
Chr3	CDS	90077565	90077647	90077565	ID=MsG0380016965.01.T01:cds;Parent=MsG0380016965.01.T01
Chr3	CDS	90076478	90077043	90076478	ID=MsG0380016965.01.T01:cds;Parent=MsG0380016965.01.T01
Chr3	three_prime_UTR	90076289	90076477	90076289	ID=MsG0380016965.01.T01:three_prime_utr;Parent=MsG0380016965.01.T01

Gene Sequence

>MsG0380016965.01.T01

ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCTTCAGGATCTTCTAAGAGAGCTAGAGCTATGAATAATGCAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGAAGCATGTTCCACCGTAACTTTATAGAAGCTTCAAATTCAGGCTTTTGTTTCAACCTGATATTTCATCGAGATTTTGGTGAAGTTGCTGCAGTTCCAAACAGACAGTACTCCATCGATTACTTAAAGATGAGTGAAACCGCCGAGAGGAAAGGGCTACCATTAGAGCAAGGCGATAGAGTGAAAGCCGGCACCCAGTTGCTACCCTTTTCAAGTTCTACTGCCATGGTGAATTCAGCTTGGAGTAGCGGACTCATTTCTTCCTGTGAAAGTGGTAGGCTTCACATCCACAACCAAAACCAACAAGTACATGTGGTTGATAAACAAGATATTTTTCCTGGTTCTACTCAAACCCCCTATGGAGAAGGGAAGCAACTTCAATTCTTACACAATGACAACAACAATCTCTCACTTCATAACGAAACCACACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAACAACTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACATCTGATAATGGTTTGGATCAAATGGTGCAGCAGCCTCATTCAATGTCCCGTATGCAGCCTTTGGGACTGAGTCTGCATGGTAACAATAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG

Protein sequence

>MsG0380016965.01.T01

MEWNLKAPSWDLGGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSSGSSKRARAMNNATLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRSMFHRNFIEASNSGFCFNLIFHRDFGEVAAVPNRQYSIDYLKMSETAERKGLPLEQGDRVKAGTQLLPFSSSTAMVNSAWSSGLISSCESGRLHIHNQNQQVHVVDKQDIFPGSTQTPYGEGKQLQFLHNDNNNLSLHNETTPLLRTSSKMFCDSLTTSVHESPCALSLLSSSQTHTSDNGLDQMVQQPHSMSRMQPLGLSLHGNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE*