AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016979.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016979.01.T01 MTR_3g098790 92.988 328 23 0 32 359 1 328 0.0 639
MsG0380016979.01.T01 MTR_7g050710 66.358 324 101 2 32 347 1 324 6.88e-155 438
MsG0380016979.01.T01 MTR_7g050580 68.269 312 90 2 32 343 1 303 5.59e-150 426
MsG0380016979.01.T01 MTR_7g050590 66.443 298 90 5 59 347 1 297 1.06e-133 384
MsG0380016979.01.T01 MTR_7g050560 61.755 319 99 5 32 343 1 303 2.05e-133 383
MsG0380016979.01.T01 MTR_7g050720 61.250 320 102 9 32 332 1 317 4.05e-123 357
MsG0380016979.01.T01 MTR_8g103940 33.537 328 182 9 42 348 37 349 3.56e-48 170
MsG0380016979.01.T01 MTR_1g035460 35.974 303 147 8 59 330 1 287 5.94e-47 164
MsG0380016979.01.T01 MTR_7g050640 69.811 106 32 0 32 137 1 106 8.48e-47 155
MsG0380016979.01.T01 MTR_1g108780 32.258 310 176 8 60 348 13 309 1.19e-44 159
MsG0380016979.01.T01 MTR_5g044670 30.945 307 189 7 44 338 16 311 3.11e-41 147
MsG0380016979.01.T01 MTR_3g061320 31.633 294 173 8 41 329 9 279 3.46e-37 135
MsG0380016979.01.T01 MTR_3g061350 31.186 295 178 7 41 329 9 284 2.11e-34 128
MsG0380016979.01.T01 MTR_3g061370 31.650 297 172 11 42 329 7 281 3.10e-33 125
MsG0380016979.01.T01 MTR_3g061340 28.105 306 163 9 41 329 9 274 2.69e-30 117
MsG0380016979.01.T01 MTR_1g035620 29.553 291 183 8 41 328 6 277 4.46e-30 119
MsG0380016979.01.T01 MTR_3g061310 28.767 292 190 9 41 329 9 285 2.55e-29 114
MsG0380016979.01.T01 MTR_6g043890 30.233 301 170 8 38 316 9 291 3.34e-28 113
MsG0380016979.01.T01 MTR_3g005490 26.712 292 164 6 43 333 20 262 3.38e-28 111
MsG0380016979.01.T01 MTR_1g050845 31.293 294 162 10 41 328 6 265 7.74e-28 115
MsG0380016979.01.T01 MTR_3g061330 48.515 101 50 1 41 141 9 107 3.34e-27 108
MsG0380016979.01.T01 MTR_3g005480 28.475 295 156 9 43 333 20 263 3.64e-27 108
MsG0380016979.01.T01 MTR_4g119990 31.290 310 180 10 42 329 13 311 1.31e-26 109
MsG0380016979.01.T01 MTR_5g070440 26.871 294 170 8 43 333 20 271 7.34e-25 102
MsG0380016979.01.T01 MTR_3g061290 47.525 101 51 1 41 141 9 107 7.46e-25 100
MsG0380016979.01.T01 MTR_3g005420 28.179 291 170 8 43 333 288 539 7.83e-25 105
MsG0380016979.01.T01 MTR_3g005420 23.551 276 149 7 43 317 39 253 3.02e-14 74.3
MsG0380016979.01.T01 MTR_1g021400 27.874 348 182 12 42 338 28 357 1.56e-24 103
MsG0380016979.01.T01 MTR_1g035570 30.241 291 173 8 53 330 14 287 1.70e-23 100
MsG0380016979.01.T01 MTR_1g035640 29.642 307 181 8 44 340 9 290 2.75e-23 100
MsG0380016979.01.T01 MTR_6g061070 27.358 318 197 10 38 329 12 321 1.05e-22 99.4
MsG0380016979.01.T01 MTR_3g005495 29.455 275 139 8 43 317 242 461 4.05e-22 97.4
MsG0380016979.01.T01 MTR_3g005495 31.967 122 76 2 60 174 29 150 1.05e-14 75.5
MsG0380016979.01.T01 MTR_1g021410 25.223 337 188 11 42 329 21 342 1.87e-21 94.4
MsG0380016979.01.T01 MTR_3g005460 25.342 292 179 7 42 329 260 516 2.39e-21 95.5
MsG0380016979.01.T01 MTR_3g005460 31.884 138 91 2 43 178 24 160 1.47e-17 84.3
MsG0380016979.01.T01 MTR_1g021360 27.619 315 192 10 42 337 177 474 2.82e-21 95.1
MsG0380016979.01.T01 MTR_1g021440 25.070 355 191 11 42 335 21 361 1.81e-20 92.0
MsG0380016979.01.T01 MTR_1g035520 27.832 309 171 12 59 328 87 382 1.64e-19 89.4
MsG0380016979.01.T01 MTR_1g021380 25.301 332 180 11 42 328 20 328 1.31e-18 86.3
MsG0380016979.01.T01 MTR_1g021350 25.915 328 188 11 45 338 22 328 1.71e-18 85.9
MsG0380016979.01.T01 MTR_1g021330 24.309 362 191 9 42 339 24 366 1.75e-18 86.3
MsG0380016979.01.T01 MTR_1g034240 38.776 98 60 0 44 141 7 104 8.54e-18 84.7
MsG0380016979.01.T01 MTR_1g034240 34.091 132 81 2 206 337 274 399 6.99e-17 82.0
MsG0380016979.01.T01 MTR_4g068320 36.585 123 72 2 213 335 277 393 1.64e-17 83.6
MsG0380016979.01.T01 MTR_4g068320 37.500 112 68 1 44 153 6 117 2.90e-17 82.8
MsG0380016979.01.T01 MTR_1g035650 31.553 206 132 5 41 245 6 203 2.54e-17 80.1
MsG0380016979.01.T01 MTR_1g021435 24.198 343 194 9 42 328 20 352 2.71e-17 82.8
MsG0380016979.01.T01 MTR_1g035480 35.385 130 79 3 39 166 12 138 2.77e-17 79.3
MsG0380016979.01.T01 MTR_3g061220 39.604 101 46 2 41 141 9 94 1.33e-16 75.5
MsG0380016979.01.T01 MTR_1g035440 41.346 104 60 1 42 144 13 116 4.12e-15 74.7
MsG0380016979.01.T01 MTR_1g035500 33.858 127 79 3 42 166 23 146 2.53e-14 71.2
MsG0380016979.01.T01 MTR_3g005420 23.551 276 149 7 43 317 20 234 3.62e-14 73.9
MsG0380016979.01.T01 MTR_1g034210 34.579 107 69 1 44 149 7 113 6.47e-14 72.0
MsG0380016979.01.T01 MTR_1g034210 34.579 107 69 1 44 149 7 113 8.90e-14 72.0
MsG0380016979.01.T01 MTR_1g034210 25.287 174 124 2 157 330 191 358 4.25e-11 63.9
MsG0380016979.01.T01 MTR_3g005440 33.898 118 78 0 43 160 241 358 1.83e-13 71.6
MsG0380016979.01.T01 MTR_3g005440 34.483 87 57 0 58 144 34 120 1.39e-12 68.9
MsG0380016979.01.T01 MTR_1g021440 34.409 93 60 1 42 134 21 112 2.70e-13 69.7
MsG0380016979.01.T01 MTR_1g021440 34.409 93 60 1 42 134 21 112 3.03e-13 70.1
MsG0380016979.01.T01 MTR_1g021440 34.409 93 60 1 42 134 21 112 8.95e-13 69.3
MsG0380016979.01.T01 MTR_1g021320 35.870 92 59 0 42 133 23 114 9.67e-13 70.1
MsG0380016979.01.T01 MTR_1g021320 34.409 93 59 2 42 134 182 272 3.94e-11 65.1
MsG0380016979.01.T01 MTR_1g035490 34.646 127 76 4 206 330 75 196 2.73e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016979.01.T01 AT3G18990 27.536 345 178 8 44 330 6 336 1.20e-32 125
MsG0380016979.01.T01 AT3G18990 27.586 348 180 8 44 333 6 339 1.49e-32 125
MsG0380016979.01.T01 AT4G01580 39.423 104 63 0 44 147 30 133 2.32e-19 85.1
MsG0380016979.01.T01 AT1G49475 41.584 101 58 1 44 144 34 133 6.20e-19 84.0
MsG0380016979.01.T01 AT3G18960 38.462 104 64 0 44 147 30 133 3.92e-18 82.0
MsG0380016979.01.T01 AT3G18960 38.462 104 64 0 44 147 30 133 5.03e-18 82.0
MsG0380016979.01.T01 AT3G18960 40.909 88 52 0 60 147 9 96 3.30e-15 73.2
MsG0380016979.01.T01 AT1G49480 28.415 183 110 6 148 330 60 221 2.33e-12 66.2
MsG0380016979.01.T01 AT1G49480 28.415 183 110 6 148 330 60 221 2.33e-12 66.2
MsG0380016979.01.T01 AT1G49480 28.415 183 110 6 148 330 60 221 2.33e-12 66.2

Find 57 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAATTGGAAATTAAATT+TGG 0.186782 3:-90261989 MsG0380016979.01.T01:CDS
CATATCAAAGTAAGATTAAT+TGG 0.187322 3:-90260193 MsG0380016979.01.T01:CDS
TATTTCTCCACAAGCTTTCT+TGG 0.203077 3:+90262057 None:intergenic
GCTAACTCCTCCTTTGAAAT+TGG 0.203833 3:-90261718 MsG0380016979.01.T01:CDS
CAAAGATGTGCACATGAAAA+AGG 0.205065 3:+90261860 None:intergenic
CTTTCCAAGTTCATATATTC+AGG 0.253552 3:-90260247 MsG0380016979.01.T01:CDS
GACAAGAGTTGAAGCTAAAA+AGG 0.273172 3:-90261806 MsG0380016979.01.T01:CDS
TAGCGAGTGCATGTTAGTTT+TGG 0.276441 3:-90264177 None:intergenic
TATGTTAAGCTACTTCTTCA+TGG 0.302623 3:-90262973 MsG0380016979.01.T01:CDS
AGACTCCAAATGGTGTAAAT+TGG 0.312711 3:-90262002 MsG0380016979.01.T01:CDS
AATTTCCAATTTACACCATT+TGG 0.315099 3:+90261997 None:intergenic
AGAAAGCTTGTGGAGAAATA+TGG 0.315667 3:-90262054 MsG0380016979.01.T01:CDS
TGCAACTTACCAGAAGAAAA+TGG 0.347556 3:+90260864 None:intergenic
ATCCTGATTCGGTACTTTGC+AGG 0.347997 3:+90260386 None:intergenic
CTACAATCTTCATTATTTGA+AGG 0.379644 3:+90261760 None:intergenic
AAGTGTCAAATGGCAGAGTT+TGG 0.384047 3:-90260409 MsG0380016979.01.T01:CDS
TTATCAGCATCAACAATCAT+TGG 0.392502 3:+90260971 None:intergenic
GGCCTGCAAAGTACCGAATC+AGG 0.422243 3:-90260388 MsG0380016979.01.T01:CDS
TGGCAAAATATGGTTTCAAA+AGG 0.425042 3:-90261956 MsG0380016979.01.T01:CDS
TCCATCCTTTGTTGTTGTCA+TGG 0.427556 3:-90260906 MsG0380016979.01.T01:CDS
GCAGTAGTTGTGTTAATGTT+CGG 0.444915 3:-90261693 MsG0380016979.01.T01:CDS
CCATCCTTTGTTGTTGTCAT+GGG 0.446533 3:-90260905 MsG0380016979.01.T01:CDS
TTACAAGCTTTCCTTGATGA+AGG 0.456239 3:+90262892 None:intergenic
TTAGCTTCAACTCTTGTCAA+AGG 0.484921 3:+90261811 None:intergenic
ATGATCTTGAAGAAGTGAAC+TGG 0.487555 3:+90262927 None:intergenic
TAGCTTCAACTCTTGTCAAA+GGG 0.493656 3:+90261812 None:intergenic
CTTTCTGTCAATATGATGTA+CGG 0.494299 3:+90261654 None:intergenic
TCACTACTCAGTCATTCATA+AGG 0.498230 3:-90263007 MsG0380016979.01.T01:CDS
GAAGACAATAACTTGAAAGT+TGG 0.499244 3:-90260311 MsG0380016979.01.T01:CDS
ACATGTGTAAAGACTCCAAA+TGG 0.500501 3:-90262012 MsG0380016979.01.T01:CDS
TCTCCCTGAATATATGAACT+TGG 0.502600 3:+90260243 None:intergenic
CGTACATCATATTGACAGAA+AGG 0.506265 3:-90261653 MsG0380016979.01.T01:CDS
GACATTGAGTTCAGCGACAT+TGG 0.511343 3:-90264152 MsG0380016979.01.T01:intron
CATCTTTGATAAGAGTGCCT+TGG 0.514558 3:-90261845 MsG0380016979.01.T01:CDS
AAATATGGTTTCAAAAGGGA+TGG 0.524548 3:-90261951 MsG0380016979.01.T01:CDS
CATATTGACAGAAAGGGAAA+AGG 0.525115 3:-90261646 MsG0380016979.01.T01:intron
TAATGTTCGGAAATTTCAAA+AGG 0.529933 3:-90261680 MsG0380016979.01.T01:CDS
CTGTGTGGGACATCCTGATT+CGG 0.531424 3:+90260375 None:intergenic
CAGACTATACCGTCTATGTT+CGG 0.532014 3:-90260479 MsG0380016979.01.T01:CDS
GGCAAAATATGGTTTCAAAA+GGG 0.535267 3:-90261955 MsG0380016979.01.T01:CDS
TTTCCAAGTTCATATATTCA+GGG 0.536079 3:-90260246 MsG0380016979.01.T01:CDS
ACTACTGCTTCCAATTTCAA+AGG 0.542132 3:+90261708 None:intergenic
GTACATCATATTGACAGAAA+GGG 0.549586 3:-90261652 MsG0380016979.01.T01:CDS
CAAAGGGCTATTTATCTCCA+AGG 0.557179 3:+90261828 None:intergenic
CCCATGACAACAACAAAGGA+TGG 0.571041 3:+90260905 None:intergenic
GAGTATCATTCTCTAGCTCA+TGG 0.575939 3:-90261916 MsG0380016979.01.T01:CDS
CTAAGATTTGAACTCTCAAG+TGG 0.579522 3:-90260350 MsG0380016979.01.T01:CDS
CTTACTCAAAACCTTCATCA+AGG 0.582547 3:-90262903 MsG0380016979.01.T01:CDS
GATTTGAACTCTCAAGTGGA+TGG 0.585291 3:-90260346 MsG0380016979.01.T01:CDS
GATGATGCCAAGAAAGCTTG+TGG 0.596116 3:-90262064 MsG0380016979.01.T01:CDS
TTCAAATCTTAGTCCTGTGT+GGG 0.598172 3:+90260361 None:intergenic
TTTAATTTGAATAAGAAGCG+AGG 0.603085 3:-90260446 MsG0380016979.01.T01:CDS
ACTGCTTCCAATTTCAAAGG+AGG 0.612452 3:+90261711 None:intergenic
GTTCAAATCTTAGTCCTGTG+TGG 0.647989 3:+90260360 None:intergenic
TGTCTCTTACCGAACATAGA+CGG 0.669663 3:+90260470 None:intergenic
CGAATCAGGATGTCCCACAC+AGG 0.680142 3:-90260374 MsG0380016979.01.T01:CDS
TGCACCCATGACAACAACAA+AGG 0.693553 3:+90260901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTGTAATATAAATTATTT+AGG + Chr3:90261992-90262011 None:intergenic 10.0%
!! GTATATTAAAAAACATAAAA+AGG + Chr3:90261599-90261618 None:intergenic 10.0%
!! ATAATAACTAAATGTACTAT+TGG + Chr3:90260852-90260871 None:intergenic 15.0%
!! TGTAAATTGGAAATTAAATT+TGG - Chr3:90262335-90262354 MsG0380016979.01.T01:intron 15.0%
!!! AAGTTGATTTTAACATTTTT+TGG - Chr3:90262897-90262916 MsG0380016979.01.T01:CDS 15.0%
!!! ATTAATCTGGTTTAATTAAT+TGG - Chr3:90262235-90262254 MsG0380016979.01.T01:intron 15.0%
!!! TTATTATTCAACTCATTTTT+AGG - Chr3:90263017-90263036 MsG0380016979.01.T01:intron 15.0%
!!! TTCATGTTATCATTTTTAAA+TGG - Chr3:90262768-90262787 MsG0380016979.01.T01:intron 15.0%
!! AAAAAATGTATAAGTGAAAG+AGG - Chr3:90260442-90260461 MsG0380016979.01.T01:CDS 20.0%
!! AAAAATGTATAAGTGAAAGA+GGG - Chr3:90260443-90260462 MsG0380016979.01.T01:CDS 20.0%
!! AAATCTGTCCAAAAAAAAAT+AGG - Chr3:90260725-90260744 MsG0380016979.01.T01:intron 20.0%
!! ACAACTAAATATCTACTTTA+TGG - Chr3:90263304-90263323 MsG0380016979.01.T01:intron 20.0%
!! CATATCAAAGTAAGATTAAT+TGG - Chr3:90264131-90264150 MsG0380016979.01.T01:intron 20.0%
!! CTCCATTAAGAAATATATAT+TGG - Chr3:90263548-90263567 MsG0380016979.01.T01:intron 20.0%
!! GACCAATATATATTTCTTAA+TGG + Chr3:90263553-90263572 None:intergenic 20.0%
!! TAAAGTACAAAATGATACTT+TGG + Chr3:90260889-90260908 None:intergenic 20.0%
!! TACGGTAAAAAAAAATTGAA+AGG + Chr3:90260335-90260354 None:intergenic 20.0%
!! TGACATTTATATCAATATGA+TGG + Chr3:90261868-90261887 None:intergenic 20.0%
!! TTAAATTTGGTAAAAAGTGA+TGG - Chr3:90262348-90262367 MsG0380016979.01.T01:intron 20.0%
!! TTCTTTCATATTTAAAAAGC+AGG + Chr3:90262440-90262459 None:intergenic 20.0%
!!! ATGAATTGATTTAGTAAAGA+TGG + Chr3:90263253-90263272 None:intergenic 20.0%
!!! ATTGATTTTGTTTCTATAGT+TGG - Chr3:90262934-90262953 MsG0380016979.01.T01:CDS 20.0%
!!! TAGTAAAAGTATCATATCTT+TGG - Chr3:90260953-90260972 MsG0380016979.01.T01:CDS 20.0%
!!! TTTTTTTTTGGACAGATTTA+AGG + Chr3:90260724-90260743 None:intergenic 20.0%
! AACCAATTACACACATATTA+AGG + Chr3:90260995-90261014 None:intergenic 25.0%
! AATTTCCAATTTACACCATT+TGG + Chr3:90262330-90262349 None:intergenic 25.0%
! ACATATTAAGGAATGGAATA+AGG + Chr3:90260983-90261002 None:intergenic 25.0%
! ACTAGTTAAGGAATCAAATA+CGG + Chr3:90260353-90260372 None:intergenic 25.0%
! AGAAAGAATGATTGATTACA+AGG - Chr3:90260251-90260270 MsG0380016979.01.T01:CDS 25.0%
! ATTACACACATATTAAGGAA+TGG + Chr3:90260990-90261009 None:intergenic 25.0%
! CACTATCATACATATTAATC+TGG - Chr3:90262222-90262241 MsG0380016979.01.T01:intron 25.0%
! CTACAATCTTCATTATTTGA+AGG + Chr3:90262567-90262586 None:intergenic 25.0%
! GAACAATCTATAACTCAAAT+TGG + Chr3:90261459-90261478 None:intergenic 25.0%
! GTAAGTTGCAAAGATAAATT+TGG - Chr3:90263473-90263492 MsG0380016979.01.T01:intron 25.0%
! TAAAAAGTGATGGCAAAATA+TGG - Chr3:90262358-90262377 MsG0380016979.01.T01:intron 25.0%
! TAATGTTCGGAAATTTCAAA+AGG - Chr3:90262644-90262663 MsG0380016979.01.T01:intron 25.0%
! TGTAAATGACTCAGTTATTA+TGG - Chr3:90260632-90260651 MsG0380016979.01.T01:intron 25.0%
! TTCCTTAATATGTGTGTAAT+TGG - Chr3:90260990-90261009 MsG0380016979.01.T01:intron 25.0%
! TTTCCAAGTTCATATATTCA+GGG - Chr3:90264078-90264097 MsG0380016979.01.T01:intron 25.0%
! TTTCTTAATGGAGAAAGATT+TGG + Chr3:90263541-90263560 None:intergenic 25.0%
!! ACTTAATTTGAATTGTTGGT+AGG + Chr3:90260677-90260696 None:intergenic 25.0%
!! ATTTTCTTAAGCTTTTCTTG+TGG - Chr3:90262057-90262076 MsG0380016979.01.T01:CDS 25.0%
!! CATGACTTAATTTGAATTGT+TGG + Chr3:90260681-90260700 None:intergenic 25.0%
!! TGATGAATTTTACATGCTTT+AGG + Chr3:90261697-90261716 None:intergenic 25.0%
!!! AAGATGGTTTTAGTTAAAAG+TGG + Chr3:90263237-90263256 None:intergenic 25.0%
!!! ATCACTTTTAATGTGACTTT+CGG - Chr3:90261061-90261080 MsG0380016979.01.T01:intron 25.0%
!!! ATTCATTTTCAAGTGTCAAA+TGG - Chr3:90263905-90263924 MsG0380016979.01.T01:intron 25.0%
!!! GGAGTATTCCTATTTTTTTT+TGG + Chr3:90260736-90260755 None:intergenic 25.0%
!!! TTTAATTTGAATAAGAAGCG+AGG - Chr3:90263878-90263897 MsG0380016979.01.T01:intron 25.0%
AAAATAGTCTCGCTAGTTAT+TGG + Chr3:90260934-90260953 None:intergenic 30.0%
AAAGATGTGCACATGAAAAA+GGG + Chr3:90262466-90262485 None:intergenic 30.0%
AAATATGGTTTCAAAAGGGA+TGG - Chr3:90262373-90262392 MsG0380016979.01.T01:intron 30.0%
AGATGGAGTCTATAAACTAT+GGG - Chr3:90262022-90262041 MsG0380016979.01.T01:CDS 30.0%
ATGACTCAGTTATTATGGAA+CGG - Chr3:90260637-90260656 MsG0380016979.01.T01:intron 30.0%
ATTTGACAACTCGATGAAAT+TGG - Chr3:90262161-90262180 MsG0380016979.01.T01:intron 30.0%
CAAAGAGGAATACTAAACTA+TGG + Chr3:90261260-90261279 None:intergenic 30.0%
CATATTTAAAAAGCAGGAGA+TGG + Chr3:90262434-90262453 None:intergenic 30.0%
CATTAGCAATAAAAGCAAAG+AGG + Chr3:90261275-90261294 None:intergenic 30.0%
CTTTCCAAGTTCATATATTC+AGG - Chr3:90264077-90264096 MsG0380016979.01.T01:intron 30.0%
CTTTCTGTCAATATGATGTA+CGG + Chr3:90262673-90262692 None:intergenic 30.0%
GAAGACAATAACTTGAAAGT+TGG - Chr3:90264013-90264032 MsG0380016979.01.T01:intron 30.0%
GGCAAAATATGGTTTCAAAA+GGG - Chr3:90262369-90262388 MsG0380016979.01.T01:intron 30.0%
GTACATCATATTGACAGAAA+GGG - Chr3:90262672-90262691 MsG0380016979.01.T01:intron 30.0%
TAGATGGAGTCTATAAACTA+TGG - Chr3:90262021-90262040 MsG0380016979.01.T01:CDS 30.0%
TATGTTAAGCTACTTCTTCA+TGG - Chr3:90261351-90261370 MsG0380016979.01.T01:intron 30.0%
TGGCAAAATATGGTTTCAAA+AGG - Chr3:90262368-90262387 MsG0380016979.01.T01:intron 30.0%
TGTGAAATGAACAAAAGACT+CGG + Chr3:90260414-90260433 None:intergenic 30.0%
TTATACCTAGAGTTAACATG+AGG + Chr3:90262800-90262819 None:intergenic 30.0%
TTATCAGCATCAACAATCAT+TGG + Chr3:90263356-90263375 None:intergenic 30.0%
TTGAGTGCAAAAATCATCTT+TGG + Chr3:90262995-90263014 None:intergenic 30.0%
TTGAGTGTAAAATTCACTCT+TGG + Chr3:90263154-90263173 None:intergenic 30.0%
TTTGCAGAAAAGAGTAGTAA+GGG - Chr3:90261121-90261140 MsG0380016979.01.T01:intron 30.0%
! AATTCAGCCTTCTTTGTTTA+GGG - Chr3:90262117-90262136 MsG0380016979.01.T01:intron 30.0%
! ATTGACTTTGTCTCAAGAAT+TGG - Chr3:90263094-90263113 MsG0380016979.01.T01:intron 30.0%
! GATTGTGAAGTGTTTATGTT+TGG + Chr3:90263211-90263230 None:intergenic 30.0%
! GATTTGGTTATTGATGTTGT+TGG + Chr3:90263525-90263544 None:intergenic 30.0%
! GTCTTTACACATGTAGTTTT+CGG + Chr3:90262306-90262325 None:intergenic 30.0%
! TGGCATTTTTATTGTGTGTT+TGG - Chr3:90262836-90262855 MsG0380016979.01.T01:intron 30.0%
!! TCTATTACTTTAACTTGCTC+TGG - Chr3:90261919-90261938 MsG0380016979.01.T01:CDS 30.0%
!!! CATTTTTTGGTCATGTCAAT+TGG - Chr3:90262910-90262929 MsG0380016979.01.T01:CDS 30.0%
!!! TGGCACTCTTTTTTATTTTG+TGG + Chr3:90261198-90261217 None:intergenic 30.0%
AAAAAGGTCTTCAACTGTCA+AGG - Chr3:90262534-90262553 MsG0380016979.01.T01:intron 35.0%
ACATGTGTAAAGACTCCAAA+TGG - Chr3:90262312-90262331 MsG0380016979.01.T01:intron 35.0%
ACTACTGCTTCCAATTTCAA+AGG + Chr3:90262619-90262638 None:intergenic 35.0%
AGAAAGCTTGTGGAGAAATA+TGG - Chr3:90262270-90262289 MsG0380016979.01.T01:intron 35.0%
AGACTCCAAATGGTGTAAAT+TGG - Chr3:90262322-90262341 MsG0380016979.01.T01:intron 35.0%
AGGAATAACTAGTGTCGTAA+GGG + Chr3:90260377-90260396 None:intergenic 35.0%
ATAACCATGTGGAAAATGAC+TGG - Chr3:90262816-90262835 MsG0380016979.01.T01:intron 35.0%
ATGATCTTGAAGAAGTGAAC+TGG + Chr3:90261400-90261419 None:intergenic 35.0%
ATGTACCTCATGTTAACTCT+AGG - Chr3:90262792-90262811 MsG0380016979.01.T01:intron 35.0%
CAAAGATGTGCACATGAAAA+AGG + Chr3:90262467-90262486 None:intergenic 35.0%
CATATTGACAGAAAGGGAAA+AGG - Chr3:90262678-90262697 MsG0380016979.01.T01:intron 35.0%
CGTACATCATATTGACAGAA+AGG - Chr3:90262671-90262690 MsG0380016979.01.T01:intron 35.0%
CTAAGATTTGAACTCTCAAG+TGG - Chr3:90263974-90263993 MsG0380016979.01.T01:intron 35.0%
CTTACTCAAAACCTTCATCA+AGG - Chr3:90261421-90261440 MsG0380016979.01.T01:intron 35.0%
GACAAGAGTTGAAGCTAAAA+AGG - Chr3:90262518-90262537 MsG0380016979.01.T01:intron 35.0%
GCAGTAGTTGTGTTAATGTT+CGG - Chr3:90262631-90262650 MsG0380016979.01.T01:intron 35.0%
GTTTGCAGAAAAGAGTAGTA+AGG - Chr3:90261120-90261139 MsG0380016979.01.T01:intron 35.0%
TAACTCTAGGTATAACCATG+TGG - Chr3:90262805-90262824 MsG0380016979.01.T01:intron 35.0%
TAGCTTCAACTCTTGTCAAA+GGG + Chr3:90262515-90262534 None:intergenic 35.0%
TATTTCTCCACAAGCTTTCT+TGG + Chr3:90262270-90262289 None:intergenic 35.0%
TCACTACTCAGTCATTCATA+AGG - Chr3:90261317-90261336 MsG0380016979.01.T01:intron 35.0%
TCTCCCTGAATATATGAACT+TGG + Chr3:90264084-90264103 None:intergenic 35.0%
TCTTGTGACACACTAAAAGT+TGG + Chr3:90261824-90261843 None:intergenic 35.0%
TGCAACTTACCAGAAGAAAA+TGG + Chr3:90263463-90263482 None:intergenic 35.0%
TTACAAGCTTTCCTTGATGA+AGG + Chr3:90261435-90261454 None:intergenic 35.0%
TTAGCTTCAACTCTTGTCAA+AGG + Chr3:90262516-90262535 None:intergenic 35.0%
TTCAAATCTTAGTCCTGTGT+GGG + Chr3:90263966-90263985 None:intergenic 35.0%
TTGAGTGTCTTGTCAAGTAT+TGG - Chr3:90260478-90260497 MsG0380016979.01.T01:CDS 35.0%
! AAATTGAAAGGTGTGTGCAT+TGG + Chr3:90260323-90260342 None:intergenic 35.0%
! AACAAAAGACTCGGTTAACA+TGG + Chr3:90260405-90260424 None:intergenic 35.0%
! ACAAAAGACTCGGTTAACAT+GGG + Chr3:90260404-90260423 None:intergenic 35.0%
! ATGATACTTTGGAAGTTGTG+TGG + Chr3:90260878-90260897 None:intergenic 35.0%
! CAATTCAGCCTTCTTTGTTT+AGG - Chr3:90262116-90262135 MsG0380016979.01.T01:intron 35.0%
! CATTTGCCTTTTCTTTTGCT+TGG - Chr3:90263822-90263841 MsG0380016979.01.T01:intron 35.0%
! GCTTTTCACATTCCATGTTA+GGG + Chr3:90261238-90261257 None:intergenic 35.0%
! GTAGATGTTGTCTAAAGTAG+TGG - Chr3:90262183-90262202 MsG0380016979.01.T01:intron 35.0%
! GTTTTCCTGCAAAATCGAAA+TGG + Chr3:90263334-90263353 None:intergenic 35.0%
! TACAGATGAGCTTTTCTAGA+TGG - Chr3:90262005-90262024 MsG0380016979.01.T01:CDS 35.0%
! TGCTAAATCGACACTCATTT+TGG + Chr3:90260766-90260785 None:intergenic 35.0%
! TTGTGGACTGTGAAAGTTAT+GGG - Chr3:90262074-90262093 MsG0380016979.01.T01:intron 35.0%
!! AATCGACACTCATTTTGGAA+CGG + Chr3:90260761-90260780 None:intergenic 35.0%
!! TTTAACTTGCTCTGGAAGAA+TGG - Chr3:90261927-90261946 MsG0380016979.01.T01:CDS 35.0%
!!! GACACTCATTTTGAAACAGA+TGG - Chr3:90261020-90261039 MsG0380016979.01.T01:intron 35.0%
AAGAGTAGTAAGGGTAGTAC+AGG - Chr3:90261130-90261149 MsG0380016979.01.T01:intron 40.0%
AAGTGTCAAATGGCAGAGTT+TGG - Chr3:90263915-90263934 MsG0380016979.01.T01:intron 40.0%
ACTCAGTTATTATGGAACGG+AGG - Chr3:90260640-90260659 MsG0380016979.01.T01:intron 40.0%
ACTGCTTCCAATTTCAAAGG+AGG + Chr3:90262616-90262635 None:intergenic 40.0%
AGTCTGCCAAGCAAAAGAAA+AGG + Chr3:90263831-90263850 None:intergenic 40.0%
CAAAGGGCTATTTATCTCCA+AGG + Chr3:90262499-90262518 None:intergenic 40.0%
CAGACTATACCGTCTATGTT+CGG - Chr3:90263845-90263864 MsG0380016979.01.T01:intron 40.0%
CCATTTCACGTTCAACTCAT+CGG - Chr3:90263060-90263079 MsG0380016979.01.T01:intron 40.0%
CGAATTGCCCTAAACAAAGA+AGG + Chr3:90262127-90262146 None:intergenic 40.0%
GAAGGCTGAATTGAGTAAAC+AGG + Chr3:90262109-90262128 None:intergenic 40.0%
GAGGAATAACTAGTGTCGTA+AGG + Chr3:90260378-90260397 None:intergenic 40.0%
GATGGTACATGCTACTATCT+CGG + Chr3:90261850-90261869 None:intergenic 40.0%
GATTTGAACTCTCAAGTGGA+TGG - Chr3:90263978-90263997 MsG0380016979.01.T01:intron 40.0%
GTTCAAATCTTAGTCCTGTG+TGG + Chr3:90263967-90263986 None:intergenic 40.0%
TGATGTAGTCAGCTGCAATA+TGG + Chr3:90261953-90261972 None:intergenic 40.0%
TGTCTCTTACCGAACATAGA+CGG + Chr3:90263857-90263876 None:intergenic 40.0%
TTTCTGCAAACCAAAGCTCA+AGG + Chr3:90261111-90261130 None:intergenic 40.0%
! CTTGTGGACTGTGAAAGTTA+TGG - Chr3:90262073-90262092 MsG0380016979.01.T01:intron 40.0%
! GAGTATCATTCTCTAGCTCA+TGG - Chr3:90262408-90262427 MsG0380016979.01.T01:intron 40.0%
! GGCTTTTCACATTCCATGTT+AGG + Chr3:90261239-90261258 None:intergenic 40.0%
! GTGTTCCATTTCGATTTTGC+AGG - Chr3:90263326-90263345 MsG0380016979.01.T01:intron 40.0%
! TGTGTGTTTGGTTTCACAGT+GGG - Chr3:90262848-90262867 MsG0380016979.01.T01:intron 40.0%
! TTGTGTGTTTGGTTTCACAG+TGG - Chr3:90262847-90262866 MsG0380016979.01.T01:intron 40.0%
!! AATGCCAGTCATTTTCCACA+TGG + Chr3:90262823-90262842 None:intergenic 40.0%
!! CATCTTTGATAAGAGTGCCT+TGG - Chr3:90262479-90262498 MsG0380016979.01.T01:intron 40.0%
!! CCATCCTTTGTTGTTGTCAT+GGG - Chr3:90263419-90263438 MsG0380016979.01.T01:intron 40.0%
!! GCTAACTCCTCCTTTGAAAT+TGG - Chr3:90262606-90262625 MsG0380016979.01.T01:intron 40.0%
!! TCCATCCTTTGTTGTTGTCA+TGG - Chr3:90263418-90263437 MsG0380016979.01.T01:intron 40.0%
AACCAAAGCTCAAGGCTTCT+AGG + Chr3:90261103-90261122 None:intergenic 45.0%
CCCATGACAACAACAAAGGA+TGG + Chr3:90263422-90263441 None:intergenic 45.0%
CTGAATTGAGTAAACAGGCC+GGG + Chr3:90262104-90262123 None:intergenic 45.0%
GACATTGAGTTCAGCGACAT+TGG - Chr3:90260172-90260191 MsG0380016979.01.T01:CDS 45.0%
GATGATGCCAAGAAAGCTTG+TGG - Chr3:90262260-90262279 MsG0380016979.01.T01:intron 45.0%
GCTGAATTGAGTAAACAGGC+CGG + Chr3:90262105-90262124 None:intergenic 45.0%
TGCACCCATGACAACAACAA+AGG + Chr3:90263426-90263445 None:intergenic 45.0%
TTCCTAGAAGCCTTGAGCTT+TGG - Chr3:90261098-90261117 MsG0380016979.01.T01:intron 45.0%
! AAGACTCGGTTAACATGGGA+CGG + Chr3:90260400-90260419 None:intergenic 45.0%
! CCGATGAGTTGAACGTGAAA+TGG + Chr3:90263063-90263082 None:intergenic 45.0%
! CGTTGAGCACCATTTTCTTC+TGG - Chr3:90263451-90263470 MsG0380016979.01.T01:intron 45.0%
! GTGTGTTTGGTTTCACAGTG+GGG - Chr3:90262849-90262868 MsG0380016979.01.T01:intron 45.0%
! TGTTTAGGGCAATTCGAGCT+GGG - Chr3:90262131-90262150 MsG0380016979.01.T01:intron 45.0%
! TTGTTTAGGGCAATTCGAGC+TGG - Chr3:90262130-90262149 MsG0380016979.01.T01:intron 45.0%
!! ATCCTGATTCGGTACTTTGC+AGG + Chr3:90263941-90263960 None:intergenic 45.0%
!! TGTCGTAAGGGCACTAGTTA+AGG + Chr3:90260365-90260384 None:intergenic 45.0%
!!! GACACTCATTTTGGAACGGA+TGG + Chr3:90260757-90260776 None:intergenic 45.0%
!!! TTTTTTATGTTTATAAAAAT+TGG + Chr3:90263282-90263301 None:intergenic 5.0%
ACAGTGGGGAGAGTCAAAAG+TGG - Chr3:90262863-90262882 MsG0380016979.01.T01:intron 50.0%
CTGTGTGGGACATCCTGATT+CGG + Chr3:90263952-90263971 None:intergenic 50.0%
GTGAAAGTTATGGGCTTGCC+CGG - Chr3:90262083-90262102 MsG0380016979.01.T01:intron 50.0%
! GCTCAAGGCTTCTAGGAAGT+TGG + Chr3:90261096-90261115 None:intergenic 50.0%
ACTCGGTTAACATGGGACGG+AGG + Chr3:90260397-90260416 None:intergenic 55.0%
CATGTTAGGGAGACCGAGTG+AGG + Chr3:90261225-90261244 None:intergenic 55.0%
CGAATCAGGATGTCCCACAC+AGG - Chr3:90263950-90263969 MsG0380016979.01.T01:intron 55.0%
CTCACTCGGTCTCCCTAACA+TGG - Chr3:90261223-90261242 MsG0380016979.01.T01:intron 55.0%
TTAGGGCAATTCGAGCTGGG+CGG - Chr3:90262134-90262153 MsG0380016979.01.T01:intron 55.0%
!! GGCCTGCAAAGTACCGAATC+AGG - Chr3:90263936-90263955 MsG0380016979.01.T01:intron 55.0%
TAGGGCAATTCGAGCTGGGC+GGG - Chr3:90262135-90262154 MsG0380016979.01.T01:intron 60.0%
! AGAGTGCCACGCTCCTCACT+CGG - Chr3:90261209-90261228 MsG0380016979.01.T01:intron 60.0%
GGGAGACCGAGTGAGGAGCG+TGG + Chr3:90261218-90261237 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90260157 90264189 90260157 ID=MsG0380016979.01;Name=MsG0380016979.01
Chr3 mRNA 90260157 90264189 90260157 ID=MsG0380016979.01.T01;Parent=MsG0380016979.01;Name=MsG0380016979.01.T01;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.8|1|1|5|0|359
Chr3 exon 90264153 90264189 90264153 ID=MsG0380016979.01.T01:exon:30838;Parent=MsG0380016979.01.T01
Chr3 exon 90262896 90263032 90262896 ID=MsG0380016979.01.T01:exon:30837;Parent=MsG0380016979.01.T01
Chr3 exon 90261647 90262085 90261647 ID=MsG0380016979.01.T01:exon:30836;Parent=MsG0380016979.01.T01
Chr3 exon 90260874 90260998 90260874 ID=MsG0380016979.01.T01:exon:30835;Parent=MsG0380016979.01.T01
Chr3 exon 90260157 90260498 90260157 ID=MsG0380016979.01.T01:exon:30834;Parent=MsG0380016979.01.T01
Chr3 CDS 90264153 90264189 90264153 ID=MsG0380016979.01.T01:cds;Parent=MsG0380016979.01.T01
Chr3 CDS 90262896 90263032 90262896 ID=MsG0380016979.01.T01:cds;Parent=MsG0380016979.01.T01
Chr3 CDS 90261647 90262085 90261647 ID=MsG0380016979.01.T01:cds;Parent=MsG0380016979.01.T01
Chr3 CDS 90260874 90260998 90260874 ID=MsG0380016979.01.T01:cds;Parent=MsG0380016979.01.T01
Chr3 CDS 90260157 90260498 90260157 ID=MsG0380016979.01.T01:cds;Parent=MsG0380016979.01.T01
Gene Sequence

>MsG0380016979.01.T01

ATGTTAGTTTTGGGTGACATTGAGTTCAGCGACATTGTACTCACTACTCAGTCATTCATAAGGTTTTATACTTTTATGTTAAGCTACTTCTTCATGGCTAACGAAATTCTTCAAGTGAAGCCAGTTCACTTCTTCAAGATCATACTTACTCAAAACCTTCATCAAGGAAAGCTTATGATGCCAAGAAAGCTTGTGGAGAAATATGGAGAATGCTTACCGAAAACTACATGTGTAAAGACTCCAAATGGTGTAAATTGGAAATTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTTCAAAAGGGATGGAAAGAATTTGCAGAGTATCATTCTCTAGCTCATGGCCATCTCCTGCTTTTTAAATATGAAAGAACTTCCCTTTTTCATGTGCACATCTTTGATAAGAGTGCCTTGGAGATAAATAGCCCTTTGACAAGAGTTGAAGCTAAAAAGGTCTTCAACTGTCAAGGAAAAAAACCTTCAAATAATGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGCTAACTCCTCCTTTGAAATTGGAAGCAGTAGTTGTGTTAATGTTCGGAAATTTCAAAAGGCAGCCGTACATCATATTGACAGAAAGGGAAAAGGAAAACCAATGATTGTTGATGCTGATAAAGTTACAACACTTGAAAGAGCAAAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGGGTGCATCATACGTTGAGCACCATTTTCTTCTGACTATACCGTCTATGTTCGGTAAGAGACACTTTAATTTGAATAAGAAGCGAGGAGATATTCATTTTCAAGTGTCAAATGGCAGAGTTTGGCCTGCAAAGTACCGAATCAGGATGTCCCACACAGGACTAAGATTTGAACTCTCAAGTGGATGGAAGACATTCGCAGAAGACAATAACTTGAAAGTTGGTGATGCTTGCAACTTTGAGCTCATTCTTAGTACTAATATGACTTTCCAAGTTCATATATTCAGGGAGACAGATAAAGACAACGCAGATTGTTTAACATATCAAAGTAAGATTAATTGGTGTTTAATTTTCTTTTCAAATCTTTTTCTCATATGA
Protein sequence

>MsG0380016979.01.T01

MLVLGDIEFSDIVLTTQSFIRFYTFMLSYFFMANEILQVKPVHFFKIILTQNLHQGKLMMPRKLVEKYGECLPKTTCVKTPNGVNWKLNLVKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSLFHVHIFDKSALEINSPLTRVEAKKVFNCQGKKPSNNEDCRASQKRKANSSFEIGSSSCVNVRKFQKAAVHHIDRKGKGKPMIVDADKVTTLERAKSFKTCNPSFVVVMGASYVEHHFLLTIPSMFGKRHFNLNKKRGDIHFQVSNGRVWPAKYRIRMSHTGLRFELSSGWKTFAEDNNLKVGDACNFELILSTNMTFQVHIFRETDKDNADCLTYQSKINWCLIFFSNLFLI*