AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016999.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016999.01.T01 MTR_3g498695 90.698 516 14 7 1 513 1 485 0.0 926
MsG0380016999.01.T01 MTR_3g498695 90.504 516 14 8 1 513 1 484 0.0 919
MsG0380016999.01.T01 MTR_7g083900 61.513 304 72 6 222 512 203 474 4.57e-99 307
MsG0380016999.01.T01 MTR_7g083900 61.311 305 72 7 222 512 203 475 2.52e-97 303
MsG0380016999.01.T01 MTR_3g030700 45.736 258 98 5 264 506 141 371 3.72e-62 208
MsG0380016999.01.T01 MTR_2g081040 48.325 209 86 1 302 510 175 361 5.11e-60 202
MsG0380016999.01.T01 MTR_3g104100 47.368 209 88 1 302 510 193 379 5.35e-59 200
MsG0380016999.01.T01 MTR_3g111290 38.938 226 92 4 286 511 155 334 4.57e-34 131
MsG0380016999.01.T01 MTR_5g030770 41.667 228 89 6 287 511 136 322 1.28e-32 127
MsG0380016999.01.T01 MTR_5g030770 41.228 228 84 6 287 511 136 316 3.10e-32 126
MsG0380016999.01.T01 MTR_1g112680 34.762 210 126 3 299 505 312 513 2.83e-30 124
MsG0380016999.01.T01 MTR_8g064700 28.261 230 134 5 275 504 217 415 1.35e-19 91.7
MsG0380016999.01.T01 MTR_1g072320 31.651 218 115 7 295 503 456 648 2.91e-16 82.4
MsG0380016999.01.T01 MTR_2g038040 28.061 196 118 4 300 493 48 222 1.41e-15 77.0
MsG0380016999.01.T01 MTR_2g084280 40.000 95 53 1 270 360 95 189 5.39e-14 73.2
MsG0380016999.01.T01 MTR_8g027495 50.000 78 34 1 302 374 456 533 8.12e-14 74.3
MsG0380016999.01.T01 MTR_8g024790 58.182 55 23 0 302 356 289 343 8.50e-14 73.9
MsG0380016999.01.T01 MTR_4g057270 44.737 76 42 0 295 370 140 215 8.64e-14 73.2
MsG0380016999.01.T01 MTR_7g117670 52.239 67 32 0 302 368 400 466 1.04e-13 73.9
MsG0380016999.01.T01 MTR_8g067280 32.843 204 100 7 286 476 434 613 1.05e-13 74.3
MsG0380016999.01.T01 MTR_8g024770 58.182 55 23 0 302 356 277 331 1.30e-13 73.2
MsG0380016999.01.T01 MTR_4g094762 27.315 216 133 6 291 505 278 470 2.34e-13 72.8
MsG0380016999.01.T01 MTR_4g009540 27.376 263 138 9 258 504 105 330 3.05e-13 71.2
MsG0380016999.01.T01 MTR_4g009540 27.426 237 123 8 258 482 105 304 3.74e-13 70.9
MsG0380016999.01.T01 MTR_8g098275 31.214 173 89 4 306 466 246 400 7.51e-13 70.9
MsG0380016999.01.T01 MTR_0246s0020 25.668 187 110 3 280 465 174 332 8.89e-13 70.1
MsG0380016999.01.T01 MTR_0246s0020 25.668 187 110 3 280 465 174 332 9.41e-13 70.1
MsG0380016999.01.T01 MTR_4g009110 25.397 189 112 5 294 482 164 323 1.32e-12 69.7
MsG0380016999.01.T01 MTR_5g030430 42.202 109 45 4 257 353 440 542 1.72e-12 70.5
MsG0380016999.01.T01 MTR_8g098275 31.034 174 90 4 305 466 309 464 1.96e-12 69.7
MsG0380016999.01.T01 MTR_7g096350 53.448 58 27 0 302 359 353 410 2.62e-12 69.3
MsG0380016999.01.T01 MTR_8g098275 31.034 174 90 4 305 466 402 557 3.04e-12 69.3
MsG0380016999.01.T01 MTR_4g092700 24.528 212 116 5 283 482 125 304 6.37e-12 67.4
MsG0380016999.01.T01 MTR_6g047570 26.201 229 135 7 283 509 137 333 1.19e-11 66.6
MsG0380016999.01.T01 MTR_0250s0040 25.676 222 123 6 285 499 65 251 1.54e-11 65.5
MsG0380016999.01.T01 MTR_5g014520 28.090 178 96 3 305 482 158 303 2.55e-11 65.5
MsG0380016999.01.T01 MTR_4g097950 25.641 195 111 5 280 465 37 206 3.46e-11 63.9
MsG0380016999.01.T01 MTR_0194s0050 25.862 232 138 6 268 476 136 356 4.62e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016999.01.T01 AT3G26744 53.623 414 147 8 114 513 112 494 3.13e-128 383
MsG0380016999.01.T01 AT3G26744 53.623 414 147 8 114 513 112 494 3.13e-128 383
MsG0380016999.01.T01 AT3G26744 53.623 414 147 8 114 513 112 494 3.13e-128 383
MsG0380016999.01.T01 AT1G12860 63.722 317 66 6 202 513 178 450 3.69e-117 353
MsG0380016999.01.T01 AT3G26744 52.713 387 138 8 114 486 112 467 6.88e-112 340
MsG0380016999.01.T01 AT1G12860 63.448 290 57 6 202 486 178 423 1.27e-101 312
MsG0380016999.01.T01 AT5G65640 41.441 222 91 7 292 511 164 348 6.53e-32 126
MsG0380016999.01.T01 AT3G26744 38.583 254 124 8 114 344 112 356 2.34e-31 124
MsG0380016999.01.T01 AT5G10570 37.788 217 85 3 297 511 144 312 2.85e-29 117
MsG0380016999.01.T01 AT2G16910 36.744 215 101 6 303 505 313 504 5.01e-29 121
MsG0380016999.01.T01 AT1G12860 55.072 138 41 3 202 335 178 298 5.70e-27 111
MsG0380016999.01.T01 AT5G65640 72.857 70 17 1 292 359 164 233 9.06e-20 90.1
MsG0380016999.01.T01 AT5G57150 30.769 195 106 6 303 494 53 221 1.34e-15 77.0
MsG0380016999.01.T01 AT2G46510 47.561 82 35 1 286 359 369 450 2.67e-15 79.0
MsG0380016999.01.T01 AT5G57150 31.461 178 93 6 303 477 54 205 1.29e-14 73.6
MsG0380016999.01.T01 AT5G57150 31.461 178 93 6 303 477 54 205 1.31e-14 73.6
MsG0380016999.01.T01 AT5G57150 31.461 178 93 6 303 477 53 204 1.48e-14 73.6
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 1.98e-14 72.0
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 2.64e-14 72.8
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 2.81e-14 72.8
MsG0380016999.01.T01 AT2G28160 27.536 207 113 5 259 463 89 260 3.01e-14 74.3
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 3.39e-14 72.8
MsG0380016999.01.T01 AT2G28160 27.536 207 113 5 259 463 89 260 3.79e-14 73.9
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 4.02e-14 72.8
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 4.88e-14 72.8
MsG0380016999.01.T01 AT4G29930 47.761 67 35 0 303 369 53 119 4.88e-14 72.8
MsG0380016999.01.T01 AT1G63650 30.625 160 97 2 307 466 408 553 6.81e-14 74.7
MsG0380016999.01.T01 AT1G63650 30.625 160 97 2 307 466 408 553 6.81e-14 74.7
MsG0380016999.01.T01 AT1G63650 30.625 160 97 2 307 466 408 553 6.81e-14 74.7
MsG0380016999.01.T01 AT5G57150 31.461 178 93 6 303 477 54 205 7.20e-14 72.4
MsG0380016999.01.T01 AT5G46760 29.907 214 110 8 302 510 413 591 1.35e-13 73.9
MsG0380016999.01.T01 AT4G00870 47.761 67 33 1 297 361 240 306 5.00e-13 71.2
MsG0380016999.01.T01 AT1G32640 53.448 58 27 0 302 359 450 507 9.54e-13 71.2
MsG0380016999.01.T01 AT4G17880 51.667 60 29 0 302 361 414 473 1.24e-12 70.9
MsG0380016999.01.T01 AT4G16430 34.921 126 68 4 261 372 265 390 2.20e-12 69.7
MsG0380016999.01.T01 AT1G01260 59.259 54 22 0 308 361 437 490 2.52e-12 69.7
MsG0380016999.01.T01 AT1G01260 59.259 54 22 0 308 361 437 490 2.52e-12 69.7
MsG0380016999.01.T01 AT1G01260 59.259 54 22 0 308 361 437 490 2.52e-12 69.7
MsG0380016999.01.T01 AT4G09820 49.231 65 30 1 297 358 353 417 3.38e-12 69.3
MsG0380016999.01.T01 AT1G10610 43.243 74 37 1 293 361 151 224 3.32e-11 65.1
MsG0380016999.01.T01 AT1G10610 43.243 74 37 1 293 361 218 291 3.94e-11 65.5
MsG0380016999.01.T01 AT1G10610 43.243 74 37 1 293 361 248 321 5.47e-11 65.1

Find 147 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATTCTTTGCCTTCTTC+TGG 0.160215 3:+90464250 MsG0380016999.01.T01:CDS
AGTCTTACTTTGCTAATCTT+TGG 0.234140 3:-90464601 None:intergenic
ACAATTCAAGTGTGTGATAT+TGG 0.260773 3:+90466250 MsG0380016999.01.T01:three_prime_UTR
ATGGATAGGGCTTCAATTCT+TGG 0.273781 3:+90464908 MsG0380016999.01.T01:CDS
ATTGGGGCTTGGCAATGAGC+TGG 0.280404 3:-90465095 None:intergenic
AGGAAGGTCAAAAGGGTTAA+TGG 0.287266 3:-90464008 None:intergenic
GTAGTAGTAGCAGCTGTTAA+TGG 0.288653 3:-90464118 None:intergenic
ACCCTGGCAGGTTGGCCATT+GGG 0.297219 3:-90465112 None:intergenic
GCAGGTTGGCCATTGGGGCT+TGG 0.306907 3:-90465106 None:intergenic
CAGAACTCTCAAGAGGGTTC+TGG 0.318137 3:+90464205 MsG0380016999.01.T01:CDS
TTTGACCTTCCTTGTGAACT+TGG 0.319070 3:+90464019 MsG0380016999.01.T01:CDS
GTTGTTGTTGTCTGTTGTTA+TGG 0.320112 3:-90463727 None:intergenic
GTTGTCTGTTGTTATGGTTA+TGG 0.324297 3:-90463721 None:intergenic
CGGTCTAGATTTATCAATCT+TGG 0.337137 3:+90465581 MsG0380016999.01.T01:CDS
TTGGGGCTTGGCAATGAGCT+GGG 0.337234 3:-90465094 None:intergenic
AAAGCAGATGAAGGAGTGTT+TGG 0.350468 3:-90463695 None:intergenic
ACCGACACCATCTTCGTTGC+CGG 0.353485 3:+90465048 MsG0380016999.01.T01:CDS
AGAAGGAAGGAAGTAGAAAA+AGG 0.356706 3:-90463439 None:intergenic
AGTAAAACATTGTCTAAGTT+AGG 0.362524 3:-90463845 None:intergenic
GACTTCAGTTTAAGTTGAAT+TGG 0.363428 3:+90466280 MsG0380016999.01.T01:three_prime_UTR
GCCCCAATGGCCAACCTGCC+AGG 0.363430 3:+90465110 MsG0380016999.01.T01:CDS
GTAGGTTGAGGTTCGGTTGC+GGG 0.363625 3:+90465695 MsG0380016999.01.T01:intron
CATTGTTGATTTGAGGCAAA+TGG 0.366809 3:-90464168 None:intergenic
TTGGATTCAGCTGGCTTCAA+TGG 0.366974 3:+90466120 MsG0380016999.01.T01:CDS
CAATGACCTTCATAATGAAT+TGG 0.368740 3:+90464970 MsG0380016999.01.T01:CDS
GGAAGGTCAAAAGGGTTAAT+GGG 0.370616 3:-90464007 None:intergenic
TACCCTGGCAGGTTGGCCAT+TGG 0.374681 3:-90465113 None:intergenic
TCAAATCAACAATGCCTTCA+TGG 0.376926 3:+90464177 MsG0380016999.01.T01:CDS
TGGATAGGGCTTCAATTCTT+GGG 0.384697 3:+90464909 MsG0380016999.01.T01:CDS
GCTGTTATAAGTTGTTTCAA+TGG 0.387308 3:+90465819 MsG0380016999.01.T01:CDS
GCTCTCAACCATGAGGGCTT+TGG 0.392480 3:+90465770 MsG0380016999.01.T01:CDS
TGTTTAAGGAGAGAGAGAAA+TGG 0.403294 3:-90463528 None:intergenic
GATGGTGTTGGTGTTGGTTG+AGG 0.406586 3:-90463938 None:intergenic
AGTACTGCTTTGATTTGCTC+TGG 0.407438 3:-90466096 None:intergenic
GCCAAGTGGTTGGGTTTAAG+AGG 0.408685 3:-90463490 None:intergenic
GAGCAACAGACCAGGTTTGC+GGG 0.411720 3:-90465751 None:intergenic
GCTAAGTTGACTGTTTGAAA+TGG 0.422288 3:-90466188 None:intergenic
AAGCAGATGAAGGAGTGTTT+GGG 0.422902 3:-90463694 None:intergenic
AGGTTCGGTTGCGGGAAGGA+AGG 0.424401 3:+90465703 MsG0380016999.01.T01:CDS
AGTTCACAAGGAAGGTCAAA+AGG 0.426484 3:-90464016 None:intergenic
CCCTGGCAGGTTGGCCATTG+GGG 0.427011 3:-90465111 None:intergenic
GTAAAACATTGTCTAAGTTA+GGG 0.430732 3:-90463844 None:intergenic
TATCATTGAGCTTCTTTCTC+CGG 0.430910 3:-90464552 None:intergenic
ATTTGAGGGGCCAAGTGGTT+GGG 0.432185 3:-90463499 None:intergenic
TTGATTCCAATTCATTATGA+AGG 0.439028 3:-90464976 None:intergenic
GCAAATCAAAGCAGTACTCT+TGG 0.442590 3:+90466101 MsG0380016999.01.T01:CDS
ATTGTTGATTTGAGGCAAAT+GGG 0.443835 3:-90464167 None:intergenic
GGCATAGTTCTTCTTTGATA+CGG 0.452108 3:-90465072 None:intergenic
GATTTGAGGGGCCAAGTGGT+TGG 0.454651 3:-90463500 None:intergenic
ATGAAGGCATTGTTGATTTG+AGG 0.454958 3:-90464175 None:intergenic
GAATTGGATGGTGTTGGTGT+TGG 0.455965 3:-90463944 None:intergenic
GAGAAATGGAGGAAGATTTG+AGG 0.456485 3:-90463514 None:intergenic
TTGTTTCAATGGATTTGCTA+TGG 0.459665 3:+90465830 MsG0380016999.01.T01:CDS
GTTGTTCATTCTGGACATCA+TGG 0.460958 3:-90463618 None:intergenic
GTACTGAAGATGGTTGGAAT+TGG 0.462423 3:-90463960 None:intergenic
CAAATCAACAATGCCTTCAT+GGG 0.462470 3:+90464178 MsG0380016999.01.T01:CDS
TCTTTCATCAAACCCATGCT+TGG 0.473324 3:+90463764 MsG0380016999.01.T01:CDS
CTGCTTTGATTTGCTCTGGA+TGG 0.474350 3:-90466092 None:intergenic
TTTGGTTTGATAGATGGATA+GGG 0.478288 3:+90464895 MsG0380016999.01.T01:intron
AGAAGAAACGGAATCATTGA+TGG 0.481195 3:-90463873 None:intergenic
ATGAAGAAGGGTGTTGAAAA+CGG 0.485213 3:-90463915 None:intergenic
GTGAAGGGAGTGATAAGAAA+AGG 0.488278 3:+90464338 MsG0380016999.01.T01:CDS
AATGCCTGCTAAGAATTTGA+TGG 0.488400 3:+90464519 MsG0380016999.01.T01:CDS
AAGGACGTTGCAGAAGGAAA+AGG 0.489864 3:-90463420 None:intergenic
ATTTGATGGCTGAACGTCGC+CGG 0.489938 3:+90464533 MsG0380016999.01.T01:CDS
AGAAATGGAGGAAGATTTGA+GGG 0.490438 3:-90463513 None:intergenic
TGGGGCTTGGCAATGAGCTG+GGG 0.491361 3:-90465093 None:intergenic
TTCATCGATTTCACCAAGCA+TGG 0.492487 3:-90463777 None:intergenic
GAAGATGGTGTCGGTGTCAA+AGG 0.493431 3:-90465040 None:intergenic
CAAGATTGATAAATCTAGAC+CGG 0.496634 3:-90465580 None:intergenic
GAATTGGAATCAACTCCTGC+TGG 0.496710 3:+90464986 MsG0380016999.01.T01:CDS
GGTTCGGTTGCGGGAAGGAA+GGG 0.497387 3:+90465704 MsG0380016999.01.T01:CDS
TGTAGGTTGAGGTTCGGTTG+CGG 0.498455 3:+90465694 MsG0380016999.01.T01:intron
ATGAGGGCTTTGGATAACCT+TGG 0.500549 3:+90465780 MsG0380016999.01.T01:CDS
TCAGCCATCAAATTCTTAGC+AGG 0.502459 3:-90464523 None:intergenic
GCAGTACTCTTGGATTCAGC+TGG 0.509971 3:+90466111 MsG0380016999.01.T01:CDS
GACAGTGCTGCTATTACCAT+TGG 0.511532 3:-90464470 None:intergenic
AGAGAGGAGTTAAATGAAGA+AGG 0.511555 3:-90463456 None:intergenic
AGGAGTTAAATGAAGAAGGA+AGG 0.511645 3:-90463452 None:intergenic
AGGTGAACATGAAGAAGAAA+CGG 0.512576 3:-90463885 None:intergenic
GTAGGTTGTGTTCCAGAAGA+AGG 0.513634 3:-90464262 None:intergenic
AACATGGGCAAGTGTGAGAT+TGG 0.516474 3:+90464316 MsG0380016999.01.T01:CDS
AGGACGTTGCAGAAGGAAAA+GGG 0.516826 3:-90463419 None:intergenic
AGAGCAACAGACCAGGTTTG+CGG 0.518682 3:-90465752 None:intergenic
TTAAGGAGAGAGAGAAATGG+AGG 0.520004 3:-90463525 None:intergenic
GATCAGAAAGGGAAGAAGAA+AGG 0.526869 3:+90464496 MsG0380016999.01.T01:CDS
AATATTGGAAATGGTTCCAA+TGG 0.527417 3:+90464454 MsG0380016999.01.T01:CDS
ATGAAAGTACTGAAGATGGT+TGG 0.528381 3:-90463966 None:intergenic
TCGATGAAGACGATGAAGAA+TGG 0.531477 3:+90463792 MsG0380016999.01.T01:CDS
AAAGGATGGAAGCTTGAAGC+AGG 0.532982 3:-90465022 None:intergenic
AGTTCTTCTTTGATACGGCC+CGG 0.536230 3:-90465067 None:intergenic
ACCTCTTAAACCCAACCACT+TGG 0.537832 3:+90463489 MsG0380016999.01.T01:five_prime_UTR
AGCTCATTGCCAAGCCCCAA+TGG 0.538619 3:+90465097 MsG0380016999.01.T01:CDS
ATACGGCCCGGCAACGAAGA+TGG 0.543485 3:-90465055 None:intergenic
CCCCAATGGCCAACCTGCCA+GGG 0.545849 3:+90465111 MsG0380016999.01.T01:CDS
CCGACACCATCTTCGTTGCC+GGG 0.547698 3:+90465049 MsG0380016999.01.T01:CDS
TCATCGATTTCACCAAGCAT+GGG 0.552156 3:-90463776 None:intergenic
GTTCACAAGGAAGGTCAAAA+GGG 0.555011 3:-90464015 None:intergenic
GAGGATGAAAGTACTGAAGA+TGG 0.555381 3:-90463970 None:intergenic
ACAAACAACATTACCCTGGC+AGG 0.556920 3:-90465124 None:intergenic
CAACAACAACAATGGTTGGA+TGG 0.558143 3:+90463640 MsG0380016999.01.T01:CDS
ACTTATGATTGTTATTTACC+CGG 0.560389 3:+90465561 MsG0380016999.01.T01:CDS
GCACTGTCACTGATCAGAAA+GGG 0.561447 3:+90464485 MsG0380016999.01.T01:CDS
GATGATTTGACTGAGAGTAA+TGG 0.561773 3:+90464427 MsG0380016999.01.T01:CDS
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 3:-90465778 None:intergenic
TTTGCTAATCTTTGGAACAA+CGG 0.562953 3:-90464593 None:intergenic
ATGGTGTCGGTGTCAAAGGA+TGG 0.562953 3:-90465036 None:intergenic
GTCTGTTGCTCTCAACCATG+AGG 0.567620 3:+90465763 MsG0380016999.01.T01:CDS
CAAGTGTGTGATATTGGCTC+TGG 0.570017 3:+90466256 MsG0380016999.01.T01:three_prime_UTR
GAAAACCAAGTTCACAAGGA+AGG 0.585921 3:-90464024 None:intergenic
GGATAGGGCTTCAATTCTTG+GGG 0.587204 3:+90464910 MsG0380016999.01.T01:CDS
GTGTTGGTTGAGGATGAAGA+AGG 0.588266 3:-90463928 None:intergenic
AGCACTGTCACTGATCAGAA+AGG 0.591329 3:+90464484 MsG0380016999.01.T01:CDS
TTATGGATGAAAGCAGATGA+AGG 0.593844 3:-90463704 None:intergenic
GTTGAGGTTCGGTTGCGGGA+AGG 0.595940 3:+90465699 MsG0380016999.01.T01:CDS
TTGTTGATTTGAGGCAAATG+GGG 0.597247 3:-90464166 None:intergenic
ATCTGAAGGAACTTCTGCAA+AGG 0.598091 3:+90464945 MsG0380016999.01.T01:CDS
TCTGTTGCTCTCAACCATGA+GGG 0.601025 3:+90465764 MsG0380016999.01.T01:CDS
CTTGCTGAATGTCTAATCCA+AGG 0.601261 3:-90465797 None:intergenic
ATGGTTGAGAGCAACAGACC+AGG 0.602316 3:-90465759 None:intergenic
AAGAAAAGGAAGTTCAGTGG+TGG 0.603486 3:+90464352 MsG0380016999.01.T01:CDS
GATAAGAAAAGGAAGTTCAG+TGG 0.603790 3:+90464349 MsG0380016999.01.T01:CDS
AGAGTTCTGAAACCCCATGA+AGG 0.606271 3:-90464191 None:intergenic
ACAACATTACCCTGGCAGGT+TGG 0.610361 3:-90465120 None:intergenic
TAAAACATTGTCTAAGTTAG+GGG 0.610771 3:-90463843 None:intergenic
TGTTGGTTGAGGATGAAGAA+GGG 0.614214 3:-90463927 None:intergenic
GGGGTTTCAGAACTCTCAAG+AGG 0.618750 3:+90464198 MsG0380016999.01.T01:CDS
GGCAAGTGTGAGATTGGTGA+AGG 0.621318 3:+90464322 MsG0380016999.01.T01:CDS
GGTGTTAGTGAAGATCCAGC+AGG 0.624647 3:-90465001 None:intergenic
TGATCATCAAGCTTCAGCAA+TGG 0.624760 3:+90464048 MsG0380016999.01.T01:CDS
TGAAGATGGTTGGAATTGGA+TGG 0.631496 3:-90463956 None:intergenic
ATGATAGACTCTATATGCTG+AGG 0.634746 3:+90464569 MsG0380016999.01.T01:CDS
TGGTTGGAATTGGATGGTGT+TGG 0.635315 3:-90463950 None:intergenic
GTGTTGAAAACGGAGGAAGA+AGG 0.636871 3:-90463905 None:intergenic
GGATGCAATTGAGTATCTGA+AGG 0.640786 3:+90464931 MsG0380016999.01.T01:CDS
TCAAGAAAACCAAGTTCACA+AGG 0.642271 3:-90464028 None:intergenic
AAGATTGATAAATCTAGACC+GGG 0.649075 3:-90465579 None:intergenic
AAGAAGGGTGTTGAAAACGG+AGG 0.649568 3:-90463912 None:intergenic
AAATCAACAATGCCTTCATG+GGG 0.651364 3:+90464179 MsG0380016999.01.T01:CDS
GGGTTTCAGAACTCTCAAGA+GGG 0.655642 3:+90464199 MsG0380016999.01.T01:CDS
GAAGAAGGCAAAGAATCAAG+TGG 0.655817 3:-90464247 None:intergenic
CCCGGCAACGAAGATGGTGT+CGG 0.657605 3:-90465049 None:intergenic
GGAAGATTTGAGGGGCCAAG+TGG 0.662091 3:-90463504 None:intergenic
GTTTGCGGGTACAAAACATG+TGG 0.680602 3:-90465737 None:intergenic
GCAAGTGTGAGATTGGTGAA+GGG 0.684813 3:+90464323 MsG0380016999.01.T01:CDS
AGAGGTGAGAAGACACAGAG+AGG 0.689860 3:-90463472 None:intergenic
GAAATGGAGGAAGATTTGAG+GGG 0.756156 3:-90463512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCATTATTAATCAAAA+AGG - Chr3:90464695-90464714 None:intergenic 15.0%
!! TCAAAATCTACATTAAAATA+TGG + Chr3:90465396-90465415 MsG0380016999.01.T01:intron 15.0%
!!! AGTTTTTTTTTGTTTGTTTT+TGG - Chr3:90463562-90463581 None:intergenic 15.0%
!! AATGGAAAAAATATTGGAAA+TGG + Chr3:90464445-90464464 MsG0380016999.01.T01:CDS 20.0%
!! TTGAAATACTGAAATTAAAG+AGG - Chr3:90464642-90464661 None:intergenic 20.0%
!! TTGTTTATTTATTGTGATTG+AGG + Chr3:90466013-90466032 MsG0380016999.01.T01:intron 20.0%
!!! ATCAAATTCTTTAAGAATCA+TGG - Chr3:90464731-90464750 None:intergenic 20.0%
!!! ATTTTACAATCAAGATTAGA+CGG + Chr3:90465338-90465357 MsG0380016999.01.T01:intron 20.0%
!!! GTTATTTTCATTTTTTGTGT+AGG + Chr3:90465677-90465696 MsG0380016999.01.T01:intron 20.0%
!!! TTTTGATTCTGATAGAAAAA+AGG - Chr3:90463590-90463609 None:intergenic 20.0%
!!! TTTTTGTTTGTTTTTGGAAT+GGG - Chr3:90463556-90463575 None:intergenic 20.0%
!!! TTTTTTGTTTGTTTTTGGAA+TGG - Chr3:90463557-90463576 None:intergenic 20.0%
! AGTAAAACATTGTCTAAGTT+AGG - Chr3:90463848-90463867 None:intergenic 25.0%
! ATTCCTAAAACTAGAAATAG+TGG + Chr3:90465216-90465235 MsG0380016999.01.T01:intron 25.0%
! GTAAAACATTGTCTAAGTTA+GGG - Chr3:90463847-90463866 None:intergenic 25.0%
! TAAAACATTGTCTAAGTTAG+GGG - Chr3:90463846-90463865 None:intergenic 25.0%
! TAAGGATTAAGGAGTAATTA+TGG + Chr3:90464771-90464790 MsG0380016999.01.T01:intron 25.0%
! TTAACTTAGTATCTTGCTAA+CGG + Chr3:90465893-90465912 MsG0380016999.01.T01:intron 25.0%
! TTGATTCCAATTCATTATGA+AGG - Chr3:90464979-90464998 None:intergenic 25.0%
! TTGTAAAATTCAAATGTAGC+TGG - Chr3:90465327-90465346 None:intergenic 25.0%
!! AGATTGATAATATGTCTTGA+AGG + Chr3:90464808-90464827 MsG0380016999.01.T01:intron 25.0%
!! ATTCTTTAAGAATCATGGAT+TGG - Chr3:90464726-90464745 None:intergenic 25.0%
!! GAGAGTAATGGAAAAAATAT+TGG + Chr3:90464439-90464458 MsG0380016999.01.T01:CDS 25.0%
!!! ACTTATGATTGTTATTTACC+CGG + Chr3:90465561-90465580 MsG0380016999.01.T01:CDS 25.0%
!!! ATGTTTTTTGGTTTGATAGA+TGG + Chr3:90464889-90464908 MsG0380016999.01.T01:intron 25.0%
!!! ATTGATGATTTGAGTTTTGA+TGG + Chr3:90464382-90464401 MsG0380016999.01.T01:CDS 25.0%
!!! TTAATGGGTTTTTGATTTTG+AGG - Chr3:90463995-90464014 None:intergenic 25.0%
!!! TTGATGATTTGAGTTTTGAT+GGG + Chr3:90464383-90464402 MsG0380016999.01.T01:CDS 25.0%
AAGATTGATAAATCTAGACC+GGG - Chr3:90465582-90465601 None:intergenic 30.0%
AATATTGGAAATGGTTCCAA+TGG + Chr3:90464454-90464473 MsG0380016999.01.T01:CDS 30.0%
AATTTGATCTGAGTCATTGT+TGG + Chr3:90464743-90464762 MsG0380016999.01.T01:intron 30.0%
ACAATTCAAGTGTGTGATAT+TGG + Chr3:90466250-90466269 MsG0380016999.01.T01:three_prime_UTR 30.0%
AGTCTTACTTTGCTAATCTT+TGG - Chr3:90464604-90464623 None:intergenic 30.0%
ATGAACAACAACAACAACAA+TGG + Chr3:90463632-90463651 MsG0380016999.01.T01:CDS 30.0%
ATTTGATCTGAGTCATTGTT+GGG + Chr3:90464744-90464763 MsG0380016999.01.T01:intron 30.0%
CAAGATTGATAAATCTAGAC+CGG - Chr3:90465583-90465602 None:intergenic 30.0%
CAATGACCTTCATAATGAAT+TGG + Chr3:90464970-90464989 MsG0380016999.01.T01:CDS 30.0%
CATTCAATACTTTCTGCATT+TGG + Chr3:90465921-90465940 MsG0380016999.01.T01:intron 30.0%
TGAGCAAATATCTAAGCAAA+AGG - Chr3:90465171-90465190 None:intergenic 30.0%
TTATTGTGATTGAGGTGTAA+AGG + Chr3:90466021-90466040 MsG0380016999.01.T01:intron 30.0%
! AATGGCTACTTCTTCTTTTA+TGG + Chr3:90464066-90464085 MsG0380016999.01.T01:CDS 30.0%
! ATGGCTACTTCTTCTTTTAT+GGG + Chr3:90464067-90464086 MsG0380016999.01.T01:CDS 30.0%
! GCTGTTATAAGTTGTTTCAA+TGG + Chr3:90465819-90465838 MsG0380016999.01.T01:CDS 30.0%
! TATCAATCTTGGTTTGACAT+AGG + Chr3:90465592-90465611 MsG0380016999.01.T01:intron 30.0%
! TTCTGCATTTGGTAATCAAA+AGG + Chr3:90465932-90465951 MsG0380016999.01.T01:intron 30.0%
!! ACTTTAAAGCACACAAACAA+AGG - Chr3:90465492-90465511 None:intergenic 30.0%
!! ATTGTTGATTTGAGGCAAAT+GGG - Chr3:90464170-90464189 None:intergenic 30.0%
!! GACTTCAGTTTAAGTTGAAT+TGG + Chr3:90466280-90466299 MsG0380016999.01.T01:three_prime_UTR 30.0%
!! TTGTTTCAATGGATTTGCTA+TGG + Chr3:90465830-90465849 MsG0380016999.01.T01:CDS 30.0%
!! TTTGCTAATCTTTGGAACAA+CGG - Chr3:90464596-90464615 None:intergenic 30.0%
!! TTTGGTTTGATAGATGGATA+GGG + Chr3:90464895-90464914 MsG0380016999.01.T01:intron 30.0%
!!! ACACCACTATTTCTAGTTTT+AGG - Chr3:90465222-90465241 None:intergenic 30.0%
!!! TTCATTTTTTGTGTAGGTTG+AGG + Chr3:90465683-90465702 MsG0380016999.01.T01:intron 30.0%
!!! TTTTGGAATGGGTTTGTTTA+AGG - Chr3:90463545-90463564 None:intergenic 30.0%
!!! TTTTGGTTTGATAGATGGAT+AGG + Chr3:90464894-90464913 MsG0380016999.01.T01:intron 30.0%
AAATCAACAATGCCTTCATG+GGG + Chr3:90464179-90464198 MsG0380016999.01.T01:CDS 35.0%
AATGCCTGCTAAGAATTTGA+TGG + Chr3:90464519-90464538 MsG0380016999.01.T01:CDS 35.0%
ACAAACAAACAACATTACCC+TGG - Chr3:90465131-90465150 None:intergenic 35.0%
ACAACAACAACAACAATGGT+TGG + Chr3:90463636-90463655 MsG0380016999.01.T01:CDS 35.0%
AGAAATGGAGGAAGATTTGA+GGG - Chr3:90463516-90463535 None:intergenic 35.0%
AGAAGAAACGGAATCATTGA+TGG - Chr3:90463876-90463895 None:intergenic 35.0%
AGAAGGAAGGAAGTAGAAAA+AGG - Chr3:90463442-90463461 None:intergenic 35.0%
AGAGAGGAGTTAAATGAAGA+AGG - Chr3:90463459-90463478 None:intergenic 35.0%
AGGAGTTAAATGAAGAAGGA+AGG - Chr3:90463455-90463474 None:intergenic 35.0%
AGGTGAACATGAAGAAGAAA+CGG - Chr3:90463888-90463907 None:intergenic 35.0%
ATGATAGACTCTATATGCTG+AGG + Chr3:90464569-90464588 MsG0380016999.01.T01:CDS 35.0%
CAAATCAACAATGCCTTCAT+GGG + Chr3:90464178-90464197 MsG0380016999.01.T01:CDS 35.0%
CGGTCTAGATTTATCAATCT+TGG + Chr3:90465581-90465600 MsG0380016999.01.T01:CDS 35.0%
GATAAGAAAAGGAAGTTCAG+TGG + Chr3:90464349-90464368 MsG0380016999.01.T01:CDS 35.0%
GATGATTTGACTGAGAGTAA+TGG + Chr3:90464427-90464446 MsG0380016999.01.T01:CDS 35.0%
GCATTGCTGTAAAAGAAGAA+AGG - Chr3:90466055-90466074 None:intergenic 35.0%
GGCATAGTTCTTCTTTGATA+CGG - Chr3:90465075-90465094 None:intergenic 35.0%
GTTGTCTGTTGTTATGGTTA+TGG - Chr3:90463724-90463743 None:intergenic 35.0%
TATCATTGAGCTTCTTTCTC+CGG - Chr3:90464555-90464574 None:intergenic 35.0%
TCAAATCAACAATGCCTTCA+TGG + Chr3:90464177-90464196 MsG0380016999.01.T01:CDS 35.0%
TCAAGAAAACCAAGTTCACA+AGG - Chr3:90464031-90464050 None:intergenic 35.0%
TGTTGGGGTAATAAGGATTA+AGG + Chr3:90464760-90464779 MsG0380016999.01.T01:intron 35.0%
TGTTTAAGGAGAGAGAGAAA+TGG - Chr3:90463531-90463550 None:intergenic 35.0%
TTATGGATGAAAGCAGATGA+AGG - Chr3:90463707-90463726 None:intergenic 35.0%
TTGCTGTAAAAGAAGAAAGG+AGG - Chr3:90466052-90466071 None:intergenic 35.0%
TTTGATCTGAGTCATTGTTG+GGG + Chr3:90464745-90464764 MsG0380016999.01.T01:intron 35.0%
! CTTTTACAGCAATGCAAAGA+AGG + Chr3:90466060-90466079 MsG0380016999.01.T01:intron 35.0%
! GCTAAGTTGACTGTTTGAAA+TGG - Chr3:90466191-90466210 None:intergenic 35.0%
! GTTGTTGTTGTCTGTTGTTA+TGG - Chr3:90463730-90463749 None:intergenic 35.0%
! GTTGTTGTTGTTGTTCATTC+TGG - Chr3:90463630-90463649 None:intergenic 35.0%
! TATGGATATTTTCAGAGCTG+AGG + Chr3:90465848-90465867 MsG0380016999.01.T01:CDS 35.0%
! TGTTGTTTAGTTGCTGTGAT+TGG + Chr3:90464840-90464859 MsG0380016999.01.T01:intron 35.0%
!! ACTGAACTTCTGCTTGTTTT+AGG + Chr3:90465515-90465534 MsG0380016999.01.T01:intron 35.0%
!! ATGAAAGTACTGAAGATGGT+TGG - Chr3:90463969-90463988 None:intergenic 35.0%
!! ATGAAGAAGGGTGTTGAAAA+CGG - Chr3:90463918-90463937 None:intergenic 35.0%
!! ATGAAGGCATTGTTGATTTG+AGG - Chr3:90464178-90464197 None:intergenic 35.0%
!! CATTGTTGATTTGAGGCAAA+TGG - Chr3:90464171-90464190 None:intergenic 35.0%
!! TTGTTGATTTGAGGCAAATG+GGG - Chr3:90464169-90464188 None:intergenic 35.0%
!! TTTTTGTGTAGGTTGAGGTT+CGG + Chr3:90465688-90465707 MsG0380016999.01.T01:intron 35.0%
!!! ATGGGTTTTTGATTTTGAGG+AGG - Chr3:90463992-90464011 None:intergenic 35.0%
!!! CTGAACTTCTGCTTGTTTTA+GGG + Chr3:90465516-90465535 MsG0380016999.01.T01:intron 35.0%
!!! GGATTCTGTGACATGTTTTT+TGG + Chr3:90464877-90464896 MsG0380016999.01.T01:intron 35.0%
AAGAAAAGGAAGTTCAGTGG+TGG + Chr3:90464352-90464371 MsG0380016999.01.T01:CDS 40.0%
AGGAAGGTCAAAAGGGTTAA+TGG - Chr3:90464011-90464030 None:intergenic 40.0%
AGTTCACAAGGAAGGTCAAA+AGG - Chr3:90464019-90464038 None:intergenic 40.0%
ATCTGAAGGAACTTCTGCAA+AGG + Chr3:90464945-90464964 MsG0380016999.01.T01:CDS 40.0%
ATGGATAGGGCTTCAATTCT+TGG + Chr3:90464908-90464927 MsG0380016999.01.T01:CDS 40.0%
CAACAACAACAATGGTTGGA+TGG + Chr3:90463640-90463659 MsG0380016999.01.T01:CDS 40.0%
CTTGATTCTTTGCCTTCTTC+TGG + Chr3:90464250-90464269 MsG0380016999.01.T01:CDS 40.0%
CTTGCTGAATGTCTAATCCA+AGG - Chr3:90465800-90465819 None:intergenic 40.0%
GAAAACCAAGTTCACAAGGA+AGG - Chr3:90464027-90464046 None:intergenic 40.0%
GAAATGGAGGAAGATTTGAG+GGG - Chr3:90463515-90463534 None:intergenic 40.0%
GAAGAAGGCAAAGAATCAAG+TGG - Chr3:90464250-90464269 None:intergenic 40.0%
GAGAAATGGAGGAAGATTTG+AGG - Chr3:90463517-90463536 None:intergenic 40.0%
GAGTCATTGTTGGGGTAATA+AGG + Chr3:90464753-90464772 MsG0380016999.01.T01:intron 40.0%
GATCAGAAAGGGAAGAAGAA+AGG + Chr3:90464496-90464515 MsG0380016999.01.T01:CDS 40.0%
GCAAATCAAAGCAGTACTCT+TGG + Chr3:90466101-90466120 MsG0380016999.01.T01:CDS 40.0%
GGAAGGTCAAAAGGGTTAAT+GGG - Chr3:90464010-90464029 None:intergenic 40.0%
GGATGCAATTGAGTATCTGA+AGG + Chr3:90464931-90464950 MsG0380016999.01.T01:CDS 40.0%
GTACTGAAGATGGTTGGAAT+TGG - Chr3:90463963-90463982 None:intergenic 40.0%
GTAGTAGTAGCAGCTGTTAA+TGG - Chr3:90464121-90464140 None:intergenic 40.0%
GTGAAGGGAGTGATAAGAAA+AGG + Chr3:90464338-90464357 MsG0380016999.01.T01:CDS 40.0%
GTTCACAAGGAAGGTCAAAA+GGG - Chr3:90464018-90464037 None:intergenic 40.0%
GTTGTTCATTCTGGACATCA+TGG - Chr3:90463621-90463640 None:intergenic 40.0%
GTTGTTTGTTTGTCCAATGC+TGG + Chr3:90465138-90465157 MsG0380016999.01.T01:intron 40.0%
TAGAAAAAGGACGTTGCAGA+AGG - Chr3:90463429-90463448 None:intergenic 40.0%
TCAGCCATCAAATTCTTAGC+AGG - Chr3:90464526-90464545 None:intergenic 40.0%
TCGATGAAGACGATGAAGAA+TGG + Chr3:90463792-90463811 MsG0380016999.01.T01:CDS 40.0%
TCTTTCATCAAACCCATGCT+TGG + Chr3:90463764-90463783 MsG0380016999.01.T01:CDS 40.0%
TGAAGATGGTTGGAATTGGA+TGG - Chr3:90463959-90463978 None:intergenic 40.0%
TGATCATCAAGCTTCAGCAA+TGG + Chr3:90464048-90464067 MsG0380016999.01.T01:CDS 40.0%
TGGATAGGGCTTCAATTCTT+GGG + Chr3:90464909-90464928 MsG0380016999.01.T01:CDS 40.0%
TGTTTAGTTGCTGTGATTGG+TGG + Chr3:90464843-90464862 MsG0380016999.01.T01:intron 40.0%
TTAAGGAGAGAGAGAAATGG+AGG - Chr3:90463528-90463547 None:intergenic 40.0%
TTTGACCTTCCTTGTGAACT+TGG + Chr3:90464019-90464038 MsG0380016999.01.T01:CDS 40.0%
! AGCAGCACTGAGAAAAAACA+TGG + Chr3:90464300-90464319 MsG0380016999.01.T01:CDS 40.0%
! GCAGCACTGAGAAAAAACAT+GGG + Chr3:90464301-90464320 MsG0380016999.01.T01:CDS 40.0%
! TGTTGGTTGAGGATGAAGAA+GGG - Chr3:90463930-90463949 None:intergenic 40.0%
!! AAAAGGACTAGTTCCAGCAT+TGG - Chr3:90465154-90465173 None:intergenic 40.0%
!! AAAGCAGATGAAGGAGTGTT+TGG - Chr3:90463698-90463717 None:intergenic 40.0%
!! AAGCAGATGAAGGAGTGTTT+GGG - Chr3:90463697-90463716 None:intergenic 40.0%
!! AGTACTGCTTTGATTTGCTC+TGG - Chr3:90466099-90466118 None:intergenic 40.0%
!! GAGGATGAAAGTACTGAAGA+TGG - Chr3:90463973-90463992 None:intergenic 40.0%
!! GATTTGAGTTTTGATGGGTC+TGG + Chr3:90464388-90464407 MsG0380016999.01.T01:CDS 40.0%
!! TCATCGATTTCACCAAGCAT+GGG - Chr3:90463779-90463798 None:intergenic 40.0%
!! TTCATCGATTTCACCAAGCA+TGG - Chr3:90463780-90463799 None:intergenic 40.0%
!!! AACTTCTGCTTGTTTTAGGG+TGG + Chr3:90465519-90465538 MsG0380016999.01.T01:intron 40.0%
!!! CTGGAAAGTCACTGTTTTTG+AGG + Chr3:90464224-90464243 MsG0380016999.01.T01:CDS 40.0%
!!! GCTCTTTTCTGAAACAGAGT+AGG - Chr3:90464283-90464302 None:intergenic 40.0%
!!! TGCTTGTTTTAGGGTGGAAA+TGG + Chr3:90465525-90465544 MsG0380016999.01.T01:intron 40.0%
AAACTTGCCTGTGGATATGG+GGG + Chr3:90465266-90465285 MsG0380016999.01.T01:intron 45.0%
AAAGGATGGAAGCTTGAAGC+AGG - Chr3:90465025-90465044 None:intergenic 45.0%
AACATGGGCAAGTGTGAGAT+TGG + Chr3:90464316-90464335 MsG0380016999.01.T01:CDS 45.0%
AAGGACGTTGCAGAAGGAAA+AGG - Chr3:90463423-90463442 None:intergenic 45.0%
AAGGTTATCCAAAGCCCTCA+TGG - Chr3:90465781-90465800 None:intergenic 45.0%
ACAAACAACATTACCCTGGC+AGG - Chr3:90465127-90465146 None:intergenic 45.0%
ACCTCTTAAACCCAACCACT+TGG + Chr3:90463489-90463508 MsG0380016999.01.T01:five_prime_UTR 45.0%
AGCAAACTTGCCTGTGGATA+TGG + Chr3:90465263-90465282 MsG0380016999.01.T01:intron 45.0%
AGCACTGTCACTGATCAGAA+AGG + Chr3:90464484-90464503 MsG0380016999.01.T01:CDS 45.0%
AGGACGTTGCAGAAGGAAAA+GGG - Chr3:90463422-90463441 None:intergenic 45.0%
AGTTCTTCTTTGATACGGCC+CGG - Chr3:90465070-90465089 None:intergenic 45.0%
CAAACTTGCCTGTGGATATG+GGG + Chr3:90465265-90465284 MsG0380016999.01.T01:intron 45.0%
CTGGAACGTACGATCAAGAT+TGG - Chr3:90465427-90465446 None:intergenic 45.0%
GAATTGGAATCAACTCCTGC+TGG + Chr3:90464986-90465005 MsG0380016999.01.T01:CDS 45.0%
GCAAACTTGCCTGTGGATAT+GGG + Chr3:90465264-90465283 MsG0380016999.01.T01:intron 45.0%
GCAAGTGTGAGATTGGTGAA+GGG + Chr3:90464323-90464342 MsG0380016999.01.T01:CDS 45.0%
GCACTGTCACTGATCAGAAA+GGG + Chr3:90464485-90464504 MsG0380016999.01.T01:CDS 45.0%
GGATAGGGCTTCAATTCTTG+GGG + Chr3:90464910-90464929 MsG0380016999.01.T01:CDS 45.0%
GGGTTTCAGAACTCTCAAGA+GGG + Chr3:90464199-90464218 MsG0380016999.01.T01:CDS 45.0%
GTAGGTTGTGTTCCAGAAGA+AGG - Chr3:90464265-90464284 None:intergenic 45.0%
GTGTTGAAAACGGAGGAAGA+AGG - Chr3:90463908-90463927 None:intergenic 45.0%
GTTTGCGGGTACAAAACATG+TGG - Chr3:90465740-90465759 None:intergenic 45.0%
TCTGTTGCTCTCAACCATGA+GGG + Chr3:90465764-90465783 MsG0380016999.01.T01:CDS 45.0%
TGGTTGGAATTGGATGGTGT+TGG - Chr3:90463953-90463972 None:intergenic 45.0%
TTGATCGTACGTTCCAGATG+TGG + Chr3:90465430-90465449 MsG0380016999.01.T01:intron 45.0%
! ATGTTTTGTACCCGCAAACC+TGG + Chr3:90465741-90465760 MsG0380016999.01.T01:CDS 45.0%
! GACAGTGCTGCTATTACCAT+TGG - Chr3:90464473-90464492 None:intergenic 45.0%
! TTGGATTCAGCTGGCTTCAA+TGG + Chr3:90466120-90466139 MsG0380016999.01.T01:CDS 45.0%
!! AAGAAGGGTGTTGAAAACGG+AGG - Chr3:90463915-90463934 None:intergenic 45.0%
!! AGAGTTCTGAAACCCCATGA+AGG - Chr3:90464194-90464213 None:intergenic 45.0%
!! ATGAGGGCTTTGGATAACCT+TGG + Chr3:90465780-90465799 MsG0380016999.01.T01:CDS 45.0%
!! CAAGTGTGTGATATTGGCTC+TGG + Chr3:90466256-90466275 MsG0380016999.01.T01:three_prime_UTR 45.0%
!! CTGCTTTGATTTGCTCTGGA+TGG - Chr3:90466095-90466114 None:intergenic 45.0%
!! GAATTGGATGGTGTTGGTGT+TGG - Chr3:90463947-90463966 None:intergenic 45.0%
!! GTGTTGGTTGAGGATGAAGA+AGG - Chr3:90463931-90463950 None:intergenic 45.0%
!! TGATTGGTGGTGTGGATCTA+TGG + Chr3:90464856-90464875 MsG0380016999.01.T01:intron 45.0%
ACAACATTACCCTGGCAGGT+TGG - Chr3:90465123-90465142 None:intergenic 50.0%
ACAGCTAGCAAACTTGCCTG+TGG + Chr3:90465257-90465276 MsG0380016999.01.T01:intron 50.0%
AGAGCAACAGACCAGGTTTG+CGG - Chr3:90465755-90465774 None:intergenic 50.0%
AGAGGTGAGAAGACACAGAG+AGG - Chr3:90463475-90463494 None:intergenic 50.0%
ATGGTTGAGAGCAACAGACC+AGG - Chr3:90465762-90465781 None:intergenic 50.0%
ATTTGAGGGGCCAAGTGGTT+GGG - Chr3:90463502-90463521 None:intergenic 50.0%
CAGAACTCTCAAGAGGGTTC+TGG + Chr3:90464205-90464224 MsG0380016999.01.T01:CDS 50.0%
CTGGTTGCATACAGTCACAG+AGG - Chr3:90465308-90465327 None:intergenic 50.0%
GCAGTACTCTTGGATTCAGC+TGG + Chr3:90466111-90466130 MsG0380016999.01.T01:CDS 50.0%
GCCAAGTGGTTGGGTTTAAG+AGG - Chr3:90463493-90463512 None:intergenic 50.0%
GGCAAGTGTGAGATTGGTGA+AGG + Chr3:90464322-90464341 MsG0380016999.01.T01:CDS 50.0%
GGGGTTTCAGAACTCTCAAG+AGG + Chr3:90464198-90464217 MsG0380016999.01.T01:CDS 50.0%
GGTGTTAGTGAAGATCCAGC+AGG - Chr3:90465004-90465023 None:intergenic 50.0%
GTCTGTTGCTCTCAACCATG+AGG + Chr3:90465763-90465782 MsG0380016999.01.T01:CDS 50.0%
TACACGCACTTAGCCACATC+TGG - Chr3:90465446-90465465 None:intergenic 50.0%
! ATTTGATGGCTGAACGTCGC+CGG + Chr3:90464533-90464552 MsG0380016999.01.T01:CDS 50.0%
! TGTAGGTTGAGGTTCGGTTG+CGG + Chr3:90465694-90465713 MsG0380016999.01.T01:intron 50.0%
!! AGTTGCTGTGATTGGTGGTG+TGG + Chr3:90464848-90464867 MsG0380016999.01.T01:intron 50.0%
!! ATGGTGTCGGTGTCAAAGGA+TGG - Chr3:90465039-90465058 None:intergenic 50.0%
!! GAAGATGGTGTCGGTGTCAA+AGG - Chr3:90465043-90465062 None:intergenic 50.0%
!! GATGGTGTTGGTGTTGGTTG+AGG - Chr3:90463941-90463960 None:intergenic 50.0%
AACGCAACCCCCATATCCAC+AGG - Chr3:90465276-90465295 None:intergenic 55.0%
ACCGACACCATCTTCGTTGC+CGG + Chr3:90465048-90465067 MsG0380016999.01.T01:CDS 55.0%
AGCTCATTGCCAAGCCCCAA+TGG + Chr3:90465097-90465116 MsG0380016999.01.T01:CDS 55.0%
ATTGGGGCTTGGCAATGAGC+TGG - Chr3:90465098-90465117 None:intergenic 55.0%
GAGCAACAGACCAGGTTTGC+GGG - Chr3:90465754-90465773 None:intergenic 55.0%
GATTTGAGGGGCCAAGTGGT+TGG - Chr3:90463503-90463522 None:intergenic 55.0%
GCTCTCAACCATGAGGGCTT+TGG + Chr3:90465770-90465789 MsG0380016999.01.T01:CDS 55.0%
GGAAGATTTGAGGGGCCAAG+TGG - Chr3:90463507-90463526 None:intergenic 55.0%
TTGGGGCTTGGCAATGAGCT+GGG - Chr3:90465097-90465116 None:intergenic 55.0%
! GTAGGTTGAGGTTCGGTTGC+GGG + Chr3:90465695-90465714 MsG0380016999.01.T01:intron 55.0%
ATACGGCCCGGCAACGAAGA+TGG - Chr3:90465058-90465077 None:intergenic 60.0%
CCCGGCAACGAAGATGGTGT+CGG - Chr3:90465052-90465071 None:intergenic 60.0%
CCGACACCATCTTCGTTGCC+GGG + Chr3:90465049-90465068 MsG0380016999.01.T01:CDS 60.0%
TGGGGCTTGGCAATGAGCTG+GGG - Chr3:90465096-90465115 None:intergenic 60.0%
! ACCCTGGCAGGTTGGCCATT+GGG - Chr3:90465115-90465134 None:intergenic 60.0%
! AGGTTCGGTTGCGGGAAGGA+AGG + Chr3:90465703-90465722 MsG0380016999.01.T01:CDS 60.0%
! GGTTCGGTTGCGGGAAGGAA+GGG + Chr3:90465704-90465723 MsG0380016999.01.T01:CDS 60.0%
! GTTGAGGTTCGGTTGCGGGA+AGG + Chr3:90465699-90465718 MsG0380016999.01.T01:CDS 60.0%
! TACCCTGGCAGGTTGGCCAT+TGG - Chr3:90465116-90465135 None:intergenic 60.0%
CCCCAATGGCCAACCTGCCA+GGG + Chr3:90465111-90465130 MsG0380016999.01.T01:CDS 65.0%
! CCCTGGCAGGTTGGCCATTG+GGG - Chr3:90465114-90465133 None:intergenic 65.0%
! GCAGGTTGGCCATTGGGGCT+TGG - Chr3:90465109-90465128 None:intergenic 65.0%
GCCCCAATGGCCAACCTGCC+AGG + Chr3:90465110-90465129 MsG0380016999.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90463402 90466311 90463402 ID=MsG0380016999.01;Name=MsG0380016999.01
Chr3 mRNA 90463402 90466311 90463402 ID=MsG0380016999.01.T01;Parent=MsG0380016999.01;Name=MsG0380016999.01.T01;_AED=0.22;_eAED=0.24;_QI=218|0.5|0.8|1|1|1|5|159|513
Chr3 exon 90463402 90464615 90463402 ID=MsG0380016999.01.T01:exon:3354;Parent=MsG0380016999.01.T01
Chr3 exon 90464908 90465132 90464908 ID=MsG0380016999.01.T01:exon:3355;Parent=MsG0380016999.01.T01
Chr3 exon 90465537 90465602 90465537 ID=MsG0380016999.01.T01:exon:3356;Parent=MsG0380016999.01.T01
Chr3 exon 90465699 90465869 90465699 ID=MsG0380016999.01.T01:exon:3357;Parent=MsG0380016999.01.T01
Chr3 exon 90466069 90466311 90466069 ID=MsG0380016999.01.T01:exon:3358;Parent=MsG0380016999.01.T01
Chr3 five_prime_UTR 90463402 90463619 90463402 ID=MsG0380016999.01.T01:five_prime_utr;Parent=MsG0380016999.01.T01
Chr3 CDS 90463620 90464615 90463620 ID=MsG0380016999.01.T01:cds;Parent=MsG0380016999.01.T01
Chr3 CDS 90464908 90465132 90464908 ID=MsG0380016999.01.T01:cds;Parent=MsG0380016999.01.T01
Chr3 CDS 90465537 90465602 90465537 ID=MsG0380016999.01.T01:cds;Parent=MsG0380016999.01.T01
Chr3 CDS 90465699 90465869 90465699 ID=MsG0380016999.01.T01:cds;Parent=MsG0380016999.01.T01
Chr3 CDS 90466069 90466152 90466069 ID=MsG0380016999.01.T01:cds;Parent=MsG0380016999.01.T01
Chr3 three_prime_UTR 90466153 90466311 90466153 ID=MsG0380016999.01.T01:three_prime_utr;Parent=MsG0380016999.01.T01
Gene Sequence

>MsG0380016999.01.T01

ATGATGTCCAGAATGAACAACAACAACAACAATGGTTGGATGGAAGAAAGAGAAGACGAAAACAACACTACAAACCCAAACACTCCTTCATCTGCTTTCATCCATAACCATAACAACAGACAACAACAACAACAAGATTTCTCTTCTTTCATCAAACCCATGCTTGGTGAAATCGATGAAGACGATGAAGAATGGTACATCAGAGACATGTCTTTTTCTTCTTCCCCTAACTTAGACAATGTTTTACTTCACACCATCAATGATTCCGTTTCTTCTTCATGTTCACCTTCTTCCTCCGTTTTCAACACCCTTCTTCATCCTCAACCAACACCAACACCATCCAATTCCAACCATCTTCAGTACTTTCATCCTCCTCAAAATCAAAAACCCATTAACCCTTTTGACCTTCCTTGTGAACTTGGTTTTCTTGATCATCAAGCTTCAGCAATGGCTACTTCTTCTTTTATGGGTAGTTTCGTTGATTTCGCTTCGAAAACTCCATTAACAGCTGCTACTACTACTACTACTACTACTCAGTTGAGCTTGCCCCATTTGCCTCAAATCAACAATGCCTTCATGGGGTTTCAGAACTCTCAAGAGGGTTCTGGAAAGTCACTGTTTTTGAGGCCACTTGATTCTTTGCCTTCTTCTGGAACACAACCTACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACATGGGCAAGTGTGAGATTGGTGAAGGGAGTGATAAGAAAAGGAAGTTCAGTGGTGGAGATGAAATTGATGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTGACTGAGAGTAATGGAAAAAATATTGGAAATGGTTCCAATGGTAATAGCAGCACTGTCACTGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCTGAACGTCGCCGGAGAAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAATTGGAATCAACTCCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTCCATCCTTTGACACCGACACCATCTTCGTTGCCGGGCCGTATCAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGGTGGAAATGGAACGAGTCATGTAACTTATGATTGTTATTTACCCGGTCTAGATTTATCAATCTTGGTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTAAATATCCACATGTTTTGTACCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGTTGTTTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTCCATCCAGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGATCTAA
Protein sequence

>MsG0380016999.01.T01

MMSRMNNNNNNGWMEEREDENNTTNPNTPSSAFIHNHNNRQQQQQDFSSFIKPMLGEIDEDDEEWYIRDMSFSSSPNLDNVLLHTINDSVSSSCSPSSSVFNTLLHPQPTPTPSNSNHLQYFHPPQNQKPINPFDLPCELGFLDHQASAMATSSFMGSFVDFASKTPLTAATTTTTTTQLSLPHLPQINNAFMGFQNSQEGSGKSLFLRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGEGSDKKRKFSGGDEIDDLSFDGSGLNYDSDDLTESNGKNIGNGSNGNSSTVTDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPSSLPGRIKEELCPSSLPSPNGQPARGGNGTSHVTYDCYLPGLDLSILVEVRLREGRAVNIHMFCTRKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFNGMI*