AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017209.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017209.01.T01 MTR_3g103030 89.441 322 27 2 1 316 1 321 0.0 596
MsG0380017209.01.T01 MTR_1g018090 49.176 364 104 12 1 298 1 349 7.89e-86 262
MsG0380017209.01.T01 MTR_1g018090 45.317 331 100 12 1 265 1 316 2.72e-60 195
MsG0380017209.01.T01 MTR_5g005110 40.361 332 149 14 1 307 1 308 1.93e-54 181
MsG0380017209.01.T01 MTR_1g106460 51.445 173 63 4 147 308 161 323 9.73e-47 160
MsG0380017209.01.T01 MTR_1g106470 78.161 87 19 0 222 308 195 281 2.92e-43 150
MsG0380017209.01.T01 MTR_1g106480 47.712 153 45 4 187 308 3 151 5.24e-33 119
MsG0380017209.01.T01 MTR_5g005110 49.630 135 53 5 136 262 136 263 5.01e-23 96.7
MsG0380017209.01.T01 MTR_5g079500 66.667 60 20 0 232 291 227 286 2.24e-22 95.5
MsG0380017209.01.T01 MTR_4g131160 52.632 76 36 0 222 297 195 270 2.80e-18 85.1
MsG0380017209.01.T01 MTR_4g131160 52.632 76 36 0 222 297 198 273 3.02e-18 85.1
MsG0380017209.01.T01 MTR_8g093500 60.606 66 25 1 222 287 114 178 2.02e-17 81.3
MsG0380017209.01.T01 MTR_1g080890 46.341 82 44 0 222 303 192 273 4.91e-16 78.2
MsG0380017209.01.T01 MTR_3g101810 53.968 63 29 0 223 285 171 233 1.00e-15 76.3
MsG0380017209.01.T01 MTR_7g069590 54.545 55 25 0 230 284 33 87 1.08e-14 70.9
MsG0380017209.01.T01 MTR_1g106460 38.889 126 56 4 147 261 161 276 5.96e-14 71.2
MsG0380017209.01.T01 MTR_1g019240 39.241 79 48 0 222 300 84 162 1.26e-13 70.1
MsG0380017209.01.T01 MTR_1g106470 74.419 43 11 0 222 264 195 237 1.49e-13 69.7
MsG0380017209.01.T01 MTR_1g084980 42.667 75 42 1 221 295 460 533 4.17e-13 70.5
MsG0380017209.01.T01 MTR_4g033295 53.030 66 30 1 222 286 117 182 1.31e-12 65.9
MsG0380017209.01.T01 MTR_4g033295 50.746 67 32 1 222 287 117 183 1.42e-12 65.5
MsG0380017209.01.T01 MTR_8g062240 31.847 157 88 5 139 286 69 215 3.64e-12 66.2
MsG0380017209.01.T01 MTR_1g069155 43.939 66 37 0 221 286 315 380 5.65e-12 66.6
MsG0380017209.01.T01 MTR_4g065870 39.823 113 66 2 175 286 308 419 6.07e-12 66.2
MsG0380017209.01.T01 MTR_7g099540 36.458 96 56 1 191 286 225 315 7.48e-12 66.2
MsG0380017209.01.T01 MTR_3g449770 30.822 146 89 2 154 292 233 373 8.43e-12 66.2
MsG0380017209.01.T01 MTR_1g052470 54.545 66 29 1 222 286 297 362 1.51e-11 65.1
MsG0380017209.01.T01 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.55e-11 65.5
MsG0380017209.01.T01 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.72e-11 65.1
MsG0380017209.01.T01 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.86e-11 65.1
MsG0380017209.01.T01 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.88e-11 65.1
MsG0380017209.01.T01 MTR_5g017040 42.188 64 37 0 236 299 118 181 1.97e-11 64.3
MsG0380017209.01.T01 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.04e-11 64.7
MsG0380017209.01.T01 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.31e-11 64.7
MsG0380017209.01.T01 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.38e-11 64.7
MsG0380017209.01.T01 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.56e-11 64.3
MsG0380017209.01.T01 MTR_7g110810 46.269 67 34 1 220 286 201 265 3.00e-11 63.9
MsG0380017209.01.T01 MTR_5g037250 50.000 64 31 1 224 286 113 176 3.21e-11 62.8
MsG0380017209.01.T01 MTR_4g065870 39.091 110 65 2 175 283 308 416 5.48e-11 63.5
MsG0380017209.01.T01 MTR_4g070320 51.562 64 30 1 224 286 144 207 5.64e-11 63.2
MsG0380017209.01.T01 MTR_2g098310 50.000 66 32 1 222 286 331 396 5.99e-11 63.2
MsG0380017209.01.T01 MTR_3g498825 53.125 64 29 1 224 286 148 211 8.31e-11 62.4
MsG0380017209.01.T01 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.34e-11 62.8
MsG0380017209.01.T01 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.75e-11 62.8
MsG0380017209.01.T01 MTR_5g048860 51.562 64 30 1 224 286 366 429 9.17e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017209.01.T01 AT2G14760 50.230 217 74 6 109 307 121 321 2.94e-56 185
MsG0380017209.01.T01 AT4G33880 59.119 159 62 1 150 305 190 348 1.05e-54 182
MsG0380017209.01.T01 AT1G27740 61.486 148 40 3 162 308 121 252 4.04e-53 175
MsG0380017209.01.T01 AT2G14760 47.391 230 74 7 109 307 121 334 1.32e-52 176
MsG0380017209.01.T01 AT5G43175 57.931 145 52 3 165 308 81 217 8.66e-46 155
MsG0380017209.01.T01 AT5G37800 61.039 77 29 1 216 291 193 269 1.44e-23 98.6
MsG0380017209.01.T01 AT1G66470 52.809 89 42 0 203 291 175 263 2.75e-23 97.8
MsG0380017209.01.T01 AT2G24260 51.613 93 43 1 207 297 17 109 1.17e-21 92.4
MsG0380017209.01.T01 AT4G30980 47.573 103 47 2 189 290 101 197 3.45e-21 92.4
MsG0380017209.01.T01 AT4G30980 47.573 103 47 2 189 290 149 245 4.45e-21 92.8
MsG0380017209.01.T01 AT2G24260 51.613 93 43 1 207 297 120 212 7.01e-21 92.0
MsG0380017209.01.T01 AT5G58010 48.352 91 43 2 222 308 98 188 9.67e-19 85.1
MsG0380017209.01.T01 AT3G21330 52.381 63 30 0 223 285 269 331 2.65e-15 76.3
MsG0380017209.01.T01 AT5G50915 35.196 179 76 7 170 314 57 229 9.96e-15 73.6
MsG0380017209.01.T01 AT5G50915 35.196 179 76 7 170 314 57 229 9.96e-15 73.6
MsG0380017209.01.T01 AT5G50915 35.196 179 76 7 170 314 57 229 1.10e-14 73.6
MsG0380017209.01.T01 AT5G50915 35.196 179 76 7 170 314 57 229 1.10e-14 73.6
MsG0380017209.01.T01 AT5G01305 49.180 61 31 0 222 282 36 96 1.31e-14 71.2
MsG0380017209.01.T01 AT4G00120 50.000 54 27 0 232 285 121 174 3.56e-14 70.5
MsG0380017209.01.T01 AT1G25330 50.617 81 39 1 224 303 105 185 4.08e-13 68.2
MsG0380017209.01.T01 AT1G09530 37.895 95 53 1 201 295 321 409 6.07e-13 69.7
MsG0380017209.01.T01 AT1G09530 37.895 95 53 1 201 295 321 409 6.07e-13 69.7
MsG0380017209.01.T01 AT1G09530 37.895 95 53 1 201 295 321 409 6.07e-13 69.7
MsG0380017209.01.T01 AT1G09530 37.895 95 53 1 201 295 321 409 6.07e-13 69.7
MsG0380017209.01.T01 AT1G09530 37.895 95 53 1 201 295 321 409 6.07e-13 69.7
MsG0380017209.01.T01 AT1G09530 37.895 95 53 1 201 295 321 409 6.07e-13 69.7
MsG0380017209.01.T01 AT4G00050 39.423 104 51 3 183 286 77 168 1.12e-12 67.8
MsG0380017209.01.T01 AT1G51140 53.846 65 29 1 222 285 303 367 1.14e-12 68.6
MsG0380017209.01.T01 AT1G18400 54.688 64 28 1 224 286 146 209 1.72e-12 66.6
MsG0380017209.01.T01 AT5G67110 41.000 100 45 3 219 316 81 168 2.00e-12 65.9
MsG0380017209.01.T01 AT1G18400 54.688 64 28 1 224 286 146 209 2.34e-12 66.6
MsG0380017209.01.T01 AT4G00050 39.423 104 51 3 183 286 179 270 2.51e-12 67.4
MsG0380017209.01.T01 AT4G00050 39.423 104 51 3 183 286 179 270 2.53e-12 67.4
MsG0380017209.01.T01 AT4G09180 48.529 68 34 1 222 288 183 250 5.03e-12 65.5
MsG0380017209.01.T01 AT1G35460 50.000 66 32 1 222 286 180 245 8.89e-12 64.7
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 185 270 1.19e-11 65.5
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 185 270 1.19e-11 65.5
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 185 270 1.19e-11 65.5
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 256 341 1.19e-11 65.5
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 256 341 1.19e-11 65.5
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 256 341 1.19e-11 65.5
MsG0380017209.01.T01 AT2G20180 37.363 91 52 1 196 286 256 341 1.19e-11 65.5
MsG0380017209.01.T01 AT4G28790 45.946 74 39 1 227 300 275 347 1.25e-11 65.5
MsG0380017209.01.T01 AT1G73830 51.562 64 30 1 224 286 148 211 1.25e-11 64.3
MsG0380017209.01.T01 AT1G73830 51.562 64 30 1 224 286 148 211 1.28e-11 64.3
MsG0380017209.01.T01 AT4G28815 38.776 98 55 2 206 298 47 144 1.35e-11 63.9
MsG0380017209.01.T01 AT4G36930 31.624 117 78 2 200 315 167 282 1.58e-11 65.1
MsG0380017209.01.T01 AT2G46970 31.356 118 75 2 195 307 165 281 1.63e-11 65.1
MsG0380017209.01.T01 AT2G46970 31.356 118 75 2 195 307 196 312 1.75e-11 65.1
MsG0380017209.01.T01 AT2G46970 31.356 118 75 2 195 307 174 290 1.85e-11 64.7
MsG0380017209.01.T01 AT4G28815 38.776 98 55 2 206 298 123 220 2.16e-11 64.3
MsG0380017209.01.T01 AT2G18300 36.434 129 73 3 159 286 129 249 2.38e-11 64.3
MsG0380017209.01.T01 AT2G18300 36.434 129 73 3 159 286 129 249 2.42e-11 64.3
MsG0380017209.01.T01 AT1G68920 32.237 152 101 2 136 286 216 366 2.52e-11 64.7
MsG0380017209.01.T01 AT2G18300 36.434 129 73 3 159 286 129 249 2.65e-11 64.3
MsG0380017209.01.T01 AT3G07340 53.125 64 29 1 224 286 259 322 3.08e-11 64.3
MsG0380017209.01.T01 AT3G07340 53.125 64 29 1 224 286 259 322 3.47e-11 64.3
MsG0380017209.01.T01 AT1G26260 53.125 64 29 1 224 286 173 236 3.81e-11 63.5
MsG0380017209.01.T01 AT2G42280 52.308 65 30 1 222 285 278 342 4.00e-11 63.5
MsG0380017209.01.T01 AT1G26260 53.125 64 29 1 224 286 224 287 4.12e-11 63.9
MsG0380017209.01.T01 AT1G26260 53.125 64 29 1 224 286 224 287 4.12e-11 63.9
MsG0380017209.01.T01 AT1G26260 53.125 64 29 1 224 286 224 287 4.12e-11 63.9
MsG0380017209.01.T01 AT1G26260 53.125 64 29 1 224 286 224 287 4.12e-11 63.9
MsG0380017209.01.T01 AT5G48560 53.125 64 29 1 224 286 302 365 4.35e-11 63.9
MsG0380017209.01.T01 AT1G26260 53.125 64 29 1 224 286 202 265 4.37e-11 63.5
MsG0380017209.01.T01 AT5G48560 53.125 64 29 1 224 286 302 365 4.60e-11 63.9
MsG0380017209.01.T01 AT1G59640 50.000 64 31 1 224 286 137 200 5.09e-11 62.8
MsG0380017209.01.T01 AT1G10120 51.562 64 30 1 224 286 207 270 5.27e-11 63.2
MsG0380017209.01.T01 AT1G10120 51.562 64 30 1 224 286 207 270 5.27e-11 63.2
MsG0380017209.01.T01 AT2G20180 37.079 89 51 1 196 284 256 339 6.13e-11 63.2
MsG0380017209.01.T01 AT4G34530 51.562 64 30 1 224 286 173 236 7.83e-11 62.8
MsG0380017209.01.T01 AT3G23690 50.000 64 31 1 224 286 192 255 9.03e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3:-93342534 None:intergenic
TGAGTATTATGATTACTTTC+TGG 0.228641 3:-93342107 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.228928 3:+93342244 MsG0380017209.01.T01:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3:-93343180 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3:-93343204 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3:-93342254 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3:-93343034 None:intergenic
TATGCGCCAATTGCTTATAA+TGG 0.346115 3:+93343364 MsG0380017209.01.T01:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3:+93341981 MsG0380017209.01.T01:CDS
CTACAAAATCTTGTACCAAA+TGG 0.385534 3:+93343019 MsG0380017209.01.T01:CDS
CATTCCCATTCGCCATCATC+AGG 0.393250 3:-93341891 None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3:-93342740 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3:+93343020 MsG0380017209.01.T01:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3:+93341990 MsG0380017209.01.T01:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3:+93342578 MsG0380017209.01.T01:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3:+93341982 MsG0380017209.01.T01:CDS
ACATTGGATTCAATCTCAAC+AGG 0.435704 3:+93343392 MsG0380017209.01.T01:CDS
TCAAGTCCATTATAAGCAAT+TGG 0.441871 3:-93343370 None:intergenic
AACCTAAGTTGAAGCTGAAA+AGG 0.448825 3:+93342219 MsG0380017209.01.T01:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3:+93342028 MsG0380017209.01.T01:CDS
TTCCTCTGAGGTATAACCAC+TGG 0.491898 3:-93342609 None:intergenic
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3:+93341969 MsG0380017209.01.T01:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3:+93343376 MsG0380017209.01.T01:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3:+93343192 MsG0380017209.01.T01:CDS
TATCCCTGATGATGGCGAAT+GGG 0.522217 3:+93341887 MsG0380017209.01.T01:CDS
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3:+93342738 MsG0380017209.01.T01:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3:-93342035 None:intergenic
CTTGGAGCTATCCCTGATGA+TGG 0.545545 3:+93341879 MsG0380017209.01.T01:CDS
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3:+93342029 MsG0380017209.01.T01:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3:+93342276 MsG0380017209.01.T01:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3:+93342683 MsG0380017209.01.T01:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3:-93342582 None:intergenic
TGATAATTACCCTTGCATAG+AGG 0.574539 3:-93342748 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3:-93342034 None:intergenic
CTATCCCTGATGATGGCGAA+TGG 0.588808 3:+93341886 MsG0380017209.01.T01:CDS
GAAGATAAGATAAACTCATG+TGG 0.590178 3:+93342275 MsG0380017209.01.T01:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3:-93341941 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3:+93342739 MsG0380017209.01.T01:CDS
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3:-93342021 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3:+93343027 MsG0380017209.01.T01:CDS
GGTTGATAGAAATGAGAACA+AGG 0.615117 3:+93342550 MsG0380017209.01.T01:CDS
GAAAGTAATCATAATACTCA+AGG 0.616654 3:+93342110 MsG0380017209.01.T01:CDS
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3:-93342033 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3:+93342704 MsG0380017209.01.T01:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3:+93343338 MsG0380017209.01.T01:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3:-93341957 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3:+93342529 MsG0380017209.01.T01:CDS
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3:-93341954 None:intergenic
ATTCCCATTCGCCATCATCA+GGG 0.639610 3:-93341890 None:intergenic
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3:-93341917 None:intergenic
CTCTGAGGTATAACCACTGG+AGG 0.652022 3:-93342606 None:intergenic
CTCCAGTGGTTATACCTCAG+AGG 0.674227 3:+93342607 MsG0380017209.01.T01:CDS
AGAGGAACAAAACATGTGTG+AGG 0.675741 3:+93342625 MsG0380017209.01.T01:CDS
GTAGATGGACATACCTCCAG+TGG 0.708485 3:+93342593 MsG0380017209.01.T01:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3:+93342638 MsG0380017209.01.T01:CDS
AACATGTGTGAGGAAAACAG+TGG 0.790408 3:+93342635 MsG0380017209.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATGATTTGAAATTTTG+TGG + Chr3:93342470-93342489 MsG0380017209.01.T01:intron 15.0%
!! ATCATTATTGCTAATTAAAG+TGG - Chr3:93342459-93342478 None:intergenic 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + Chr3:93343253-93343272 MsG0380017209.01.T01:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + Chr3:93343111-93343130 MsG0380017209.01.T01:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + Chr3:93343115-93343134 MsG0380017209.01.T01:intron 20.0%
!!! ATGAATGTTTTGCATTTTAA+AGG + Chr3:93343064-93343083 MsG0380017209.01.T01:intron 20.0%
!!! TGAATGTTTTGCATTTTAAA+GGG + Chr3:93343065-93343084 MsG0380017209.01.T01:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + Chr3:93342970-93342989 MsG0380017209.01.T01:intron 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + Chr3:93342969-93342988 MsG0380017209.01.T01:intron 20.0%
! AAGAGGAATAGTAAAACAAA+AGG - Chr3:93342792-93342811 None:intergenic 25.0%
! AAGATAAGATAAACTCATGT+GGG + Chr3:93342276-93342295 MsG0380017209.01.T01:CDS 25.0%
! ACTCATATATTACCTTGATT+TGG - Chr3:93343207-93343226 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG + Chr3:93342110-93342129 MsG0380017209.01.T01:CDS 25.0%
! TACAAAATCTTGTACCAAAT+GGG + Chr3:93343020-93343039 MsG0380017209.01.T01:CDS 25.0%
! TGAGTATTATGATTACTTTC+TGG - Chr3:93342110-93342129 None:intergenic 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + Chr3:93342413-93342432 MsG0380017209.01.T01:intron 25.0%
!!! AATGTTTTGCATTTTAAAGG+GGG + Chr3:93343067-93343086 MsG0380017209.01.T01:intron 25.0%
!!! GAATGTTTTGCATTTTAAAG+GGG + Chr3:93343066-93343085 MsG0380017209.01.T01:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG + Chr3:93342382-93342401 MsG0380017209.01.T01:intron 25.0%
ACAGAATGGAGATTAAAAAG+AGG - Chr3:93342809-93342828 None:intergenic 30.0%
ATTGCTAATTAAAGTGGTAC+TGG - Chr3:93342453-93342472 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + Chr3:93343019-93343038 MsG0380017209.01.T01:CDS 30.0%
CTGACAAATTAATTAACCGA+TGG - Chr3:93342377-93342396 None:intergenic 30.0%
GAAGATAAGATAAACTCATG+TGG + Chr3:93342275-93342294 MsG0380017209.01.T01:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - Chr3:93343037-93343056 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG - Chr3:93343373-93343392 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - Chr3:93342926-93342945 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG + Chr3:93341982-93342001 MsG0380017209.01.T01:CDS 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + Chr3:93342484-93342503 MsG0380017209.01.T01:intron 30.0%
! GGGACAAAGGTAATTTATTT+TGG + Chr3:93343040-93343059 MsG0380017209.01.T01:intron 30.0%
!! TTTTGATTGTTCTGATCATG+TGG + Chr3:93342148-93342167 MsG0380017209.01.T01:CDS 30.0%
ACATTGGATTCAATCTCAAC+AGG + Chr3:93343392-93343411 MsG0380017209.01.T01:CDS 35.0%
ATATATGGATGGTCATACAC+AGG + Chr3:93343126-93343145 MsG0380017209.01.T01:intron 35.0%
CTTCAGTTGCAAATATTCTG+CGG - Chr3:93341920-93341939 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + Chr3:93341981-93342000 MsG0380017209.01.T01:CDS 35.0%
GAGGTTTGATCAAGTAATTG+TGG - Chr3:93341960-93341979 None:intergenic 35.0%
GCTGCAGAAATTTCACATAT+TGG - Chr3:93343183-93343202 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - Chr3:93341957-93341976 None:intergenic 35.0%
TATGCGCCAATTGCTTATAA+TGG + Chr3:93343364-93343383 MsG0380017209.01.T01:CDS 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - Chr3:93342848-93342867 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - Chr3:93342751-93342770 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + Chr3:93342219-93342238 MsG0380017209.01.T01:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - Chr3:93342224-93342243 None:intergenic 35.0%
! GGAGAAAATAATGGGAACTT+TGG + Chr3:93341990-93342009 MsG0380017209.01.T01:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - Chr3:93342220-93342239 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - Chr3:93342702-93342721 None:intergenic 35.0%
!! GCTTATAATGGACTTGACAT+TGG + Chr3:93343376-93343395 MsG0380017209.01.T01:CDS 35.0%
!! GGTTGATAGAAATGAGAACA+AGG + Chr3:93342550-93342569 MsG0380017209.01.T01:CDS 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + Chr3:93342848-93342867 MsG0380017209.01.T01:intron 35.0%
AACATGTGTGAGGAAAACAG+TGG + Chr3:93342635-93342654 MsG0380017209.01.T01:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - Chr3:93342823-93342842 None:intergenic 40.0%
AGAGGAACAAAACATGTGTG+AGG + Chr3:93342625-93342644 MsG0380017209.01.T01:CDS 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - Chr3:93342537-93342556 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - Chr3:93342585-93342604 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + Chr3:93342822-93342841 MsG0380017209.01.T01:intron 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + Chr3:93343192-93343211 MsG0380017209.01.T01:CDS 40.0%
CCATACGATATTCACTCCAT+CGG + Chr3:93342358-93342377 MsG0380017209.01.T01:intron 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + Chr3:93342704-93342723 MsG0380017209.01.T01:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG - Chr3:93342257-93342276 None:intergenic 40.0%
TCTTGTACCAAATGGGACAA+AGG + Chr3:93343027-93343046 MsG0380017209.01.T01:CDS 40.0%
TGCATCTTTGCACCTGAATT+TGG - Chr3:93342499-93342518 None:intergenic 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + Chr3:93342844-93342863 MsG0380017209.01.T01:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + Chr3:93342840-93342859 MsG0380017209.01.T01:intron 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + Chr3:93343338-93343357 MsG0380017209.01.T01:CDS 40.0%
!! ACACATGTTTTGTTCCTCTG+AGG - Chr3:93342624-93342643 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - Chr3:93342304-93342323 None:intergenic 40.0%
ACTGTGTCTCTCAACTCCAA+TGG + Chr3:93342683-93342702 MsG0380017209.01.T01:CDS 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + Chr3:93342529-93342548 MsG0380017209.01.T01:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + Chr3:93342738-93342757 MsG0380017209.01.T01:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + Chr3:93342638-93342657 MsG0380017209.01.T01:CDS 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - Chr3:93342038-93342057 None:intergenic 45.0%
ATTCCCATTCGCCATCATCA+GGG - Chr3:93341893-93341912 None:intergenic 45.0%
CCGATGGAGTGAATATCGTA+TGG - Chr3:93342361-93342380 None:intergenic 45.0%
GAAAAGAAGGCCACATGCTA+TGG - Chr3:93342835-93342854 None:intergenic 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + Chr3:93342578-93342597 MsG0380017209.01.T01:CDS 45.0%
GCTTGATGTGCCAGAATTTC+AGG + Chr3:93342244-93342263 MsG0380017209.01.T01:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + Chr3:93342739-93342758 MsG0380017209.01.T01:CDS 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - Chr3:93342037-93342056 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - Chr3:93342024-93342043 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - Chr3:93341944-93341963 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - Chr3:93341979-93341998 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - Chr3:93342317-93342336 None:intergenic 45.0%
!! TATCCCTGATGATGGCGAAT+GGG + Chr3:93341887-93341906 MsG0380017209.01.T01:CDS 45.0%
!! TTCCTCTGAGGTATAACCAC+TGG - Chr3:93342612-93342631 None:intergenic 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - Chr3:93342305-93342324 None:intergenic 45.0%
AATCTCGCCATGCCATCAAG+GGG - Chr3:93342883-93342902 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - Chr3:93342743-93342762 None:intergenic 50.0%
CATTCCCATTCGCCATCATC+AGG - Chr3:93341894-93341913 None:intergenic 50.0%
CTCCAGTGGTTATACCTCAG+AGG + Chr3:93342607-93342626 MsG0380017209.01.T01:CDS 50.0%
CTTGGAGCTATCCCTGATGA+TGG + Chr3:93341879-93341898 MsG0380017209.01.T01:CDS 50.0%
GAATCTCGCCATGCCATCAA+GGG - Chr3:93342884-93342903 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + Chr3:93341969-93341988 MsG0380017209.01.T01:CDS 50.0%
GTAGATGGACATACCTCCAG+TGG + Chr3:93342593-93342612 MsG0380017209.01.T01:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - Chr3:93342036-93342055 None:intergenic 50.0%
!! CTATCCCTGATGATGGCGAA+TGG + Chr3:93341886-93341905 MsG0380017209.01.T01:CDS 50.0%
!! CTCTGAGGTATAACCACTGG+AGG - Chr3:93342609-93342628 None:intergenic 50.0%
CGAATCTCGCCATGCCATCA+AGG - Chr3:93342885-93342904 None:intergenic 55.0%
TGGTCACACTAGCCCCTTGA+TGG + Chr3:93342868-93342887 MsG0380017209.01.T01:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + Chr3:93342873-93342892 MsG0380017209.01.T01:intron 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + Chr3:93342029-93342048 MsG0380017209.01.T01:CDS 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + Chr3:93342028-93342047 MsG0380017209.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93341870 93343438 93341870 ID=MsG0380017209.01;Name=MsG0380017209.01
Chr3 mRNA 93341870 93343438 93341870 ID=MsG0380017209.01.T01;Parent=MsG0380017209.01;Name=MsG0380017209.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|5|0|316
Chr3 exon 93341870 93342331 93341870 ID=MsG0380017209.01.T01:exon:25304;Parent=MsG0380017209.01.T01
Chr3 exon 93342506 93342760 93342506 ID=MsG0380017209.01.T01:exon:25305;Parent=MsG0380017209.01.T01
Chr3 exon 93342983 93343048 93342983 ID=MsG0380017209.01.T01:exon:25306;Parent=MsG0380017209.01.T01
Chr3 exon 93343148 93343213 93343148 ID=MsG0380017209.01.T01:exon:25307;Parent=MsG0380017209.01.T01
Chr3 exon 93343337 93343438 93343337 ID=MsG0380017209.01.T01:exon:25308;Parent=MsG0380017209.01.T01
Chr3 CDS 93341870 93342331 93341870 ID=MsG0380017209.01.T01:cds;Parent=MsG0380017209.01.T01
Chr3 CDS 93342506 93342760 93342506 ID=MsG0380017209.01.T01:cds;Parent=MsG0380017209.01.T01
Chr3 CDS 93342983 93343048 93342983 ID=MsG0380017209.01.T01:cds;Parent=MsG0380017209.01.T01
Chr3 CDS 93343148 93343213 93343148 ID=MsG0380017209.01.T01:cds;Parent=MsG0380017209.01.T01
Chr3 CDS 93343337 93343438 93343337 ID=MsG0380017209.01.T01:cds;Parent=MsG0380017209.01.T01
Gene Sequence

>MsG0380017209.01.T01

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATTAACTATAATTCACCAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAGAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCCAGTGGTTATACCTCAGAGGAACAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCTTCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCGCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACAGGAAGAAGATTTCTCCACCACCATGA
Protein sequence

>MsG0380017209.01.T01

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSPESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKKISPPP*