Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017217.01.T01 | XP_013461785.1 | 94.63 | 838 | 45 | 0 | 1 | 838 | 1 | 838 | 0 | 1580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017217.01.T01 | F4IXE7 | 31.69 | 426 | 263 | 7 | 425 | 838 | 620 | 1029 | 6.98E-63 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017217.01.T01 | A0A072VCE4 | 94.630 | 838 | 45 | 0 | 1 | 838 | 1 | 838 | 0.0 | 1580 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380017217.01.T01 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017217.01.T01 | MTR_3g103120 | 94.630 | 838 | 45 | 0 | 1 | 838 | 1 | 838 | 0.0 | 1580 |
| MsG0380017217.01.T01 | MTR_7g109640 | 61.401 | 842 | 276 | 8 | 1 | 840 | 1 | 795 | 0.0 | 976 |
| MsG0380017217.01.T01 | MTR_3g103110 | 57.983 | 714 | 181 | 7 | 235 | 840 | 97 | 799 | 0.0 | 735 |
| MsG0380017217.01.T01 | MTR_3g103110 | 73.303 | 221 | 51 | 3 | 1 | 221 | 1 | 213 | 8.84e-89 | 299 |
| MsG0380017217.01.T01 | MTR_5g024390 | 66.667 | 438 | 112 | 3 | 425 | 840 | 2 | 427 | 0.0 | 612 |
| MsG0380017217.01.T01 | MTR_5g024500 | 65.982 | 438 | 115 | 3 | 425 | 840 | 2 | 427 | 0.0 | 604 |
| MsG0380017217.01.T01 | MTR_5g071340 | 41.443 | 485 | 259 | 10 | 359 | 834 | 618 | 1086 | 1.05e-107 | 357 |
| MsG0380017217.01.T01 | MTR_3g464550 | 42.308 | 416 | 223 | 8 | 425 | 832 | 602 | 1008 | 3.76e-100 | 337 |
| MsG0380017217.01.T01 | MTR_3g103160 | 41.078 | 538 | 199 | 15 | 314 | 834 | 2 | 438 | 6.45e-86 | 281 |
| MsG0380017217.01.T01 | MTR_2g078040 | 35.666 | 443 | 262 | 8 | 404 | 836 | 741 | 1170 | 2.83e-73 | 262 |
| MsG0380017217.01.T01 | MTR_1g103830 | 31.818 | 506 | 308 | 9 | 358 | 832 | 513 | 1012 | 1.06e-67 | 246 |
| MsG0380017217.01.T01 | MTR_1g072130 | 33.806 | 423 | 260 | 7 | 423 | 834 | 809 | 1222 | 2.06e-67 | 245 |
| MsG0380017217.01.T01 | MTR_7g095140 | 30.745 | 322 | 201 | 4 | 519 | 838 | 6 | 307 | 9.84e-48 | 174 |
| MsG0380017217.01.T01 | MTR_1g068930 | 27.041 | 392 | 224 | 11 | 459 | 807 | 495 | 867 | 6.58e-39 | 156 |
| MsG0380017217.01.T01 | MTR_1g068930 | 27.157 | 394 | 221 | 14 | 459 | 807 | 458 | 830 | 6.84e-39 | 156 |
| MsG0380017217.01.T01 | MTR_7g102610 | 26.941 | 438 | 230 | 13 | 460 | 830 | 531 | 945 | 1.81e-37 | 152 |
| MsG0380017217.01.T01 | MTR_4g099530 | 23.223 | 422 | 265 | 10 | 425 | 826 | 110 | 492 | 5.45e-32 | 131 |
| MsG0380017217.01.T01 | MTR_1g062330 | 25.858 | 437 | 230 | 15 | 460 | 827 | 386 | 797 | 2.31e-29 | 125 |
| MsG0380017217.01.T01 | MTR_4g050090 | 24.945 | 453 | 241 | 15 | 460 | 842 | 226 | 649 | 7.21e-29 | 124 |
| MsG0380017217.01.T01 | MTR_4g056990 | 24.845 | 483 | 266 | 16 | 395 | 814 | 152 | 600 | 7.44e-28 | 120 |
| MsG0380017217.01.T01 | MTR_4g057290 | 25.598 | 418 | 227 | 13 | 460 | 814 | 126 | 522 | 1.82e-27 | 118 |
| MsG0380017217.01.T01 | MTR_6g061000 | 56.410 | 78 | 23 | 1 | 512 | 578 | 24 | 101 | 7.49e-22 | 91.3 |
| MsG0380017217.01.T01 | MTR_2g084425 | 29.586 | 169 | 111 | 4 | 671 | 838 | 861 | 1022 | 2.68e-17 | 87.4 |
| MsG0380017217.01.T01 | MTR_2g084425 | 30.675 | 163 | 98 | 3 | 408 | 569 | 447 | 595 | 8.67e-12 | 69.7 |
| MsG0380017217.01.T01 | MTR_2g084425 | 30.675 | 163 | 98 | 3 | 408 | 569 | 447 | 595 | 1.23e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017217.01.T01 | AT5G58610 | 40.723 | 415 | 239 | 5 | 425 | 834 | 367 | 779 | 2.08e-97 | 324 |
| MsG0380017217.01.T01 | AT5G58610 | 40.723 | 415 | 239 | 5 | 425 | 834 | 598 | 1010 | 4.09e-95 | 322 |
| MsG0380017217.01.T01 | AT5G58610 | 40.723 | 415 | 239 | 5 | 425 | 834 | 598 | 1010 | 4.99e-95 | 320 |
| MsG0380017217.01.T01 | AT5G58610 | 40.723 | 415 | 239 | 5 | 425 | 834 | 598 | 1010 | 4.99e-95 | 320 |
| MsG0380017217.01.T01 | AT5G58610 | 40.723 | 415 | 239 | 5 | 425 | 834 | 589 | 1001 | 1.10e-94 | 321 |
| MsG0380017217.01.T01 | AT5G58610 | 40.723 | 415 | 239 | 5 | 425 | 834 | 589 | 1001 | 1.46e-94 | 320 |
| MsG0380017217.01.T01 | AT5G58610 | 38.499 | 413 | 225 | 5 | 425 | 834 | 589 | 975 | 9.44e-85 | 293 |
| MsG0380017217.01.T01 | AT5G58610 | 38.499 | 413 | 225 | 5 | 425 | 834 | 589 | 975 | 1.43e-84 | 292 |
| MsG0380017217.01.T01 | AT5G58610 | 40.730 | 356 | 204 | 5 | 425 | 775 | 598 | 951 | 1.49e-78 | 274 |
| MsG0380017217.01.T01 | AT5G58610 | 40.730 | 356 | 204 | 5 | 425 | 775 | 589 | 942 | 3.45e-78 | 273 |
| MsG0380017217.01.T01 | AT1G05380 | 32.767 | 412 | 268 | 4 | 425 | 832 | 519 | 925 | 2.81e-67 | 244 |
| MsG0380017217.01.T01 | AT1G05380 | 32.767 | 412 | 268 | 4 | 425 | 832 | 519 | 925 | 2.81e-67 | 244 |
| MsG0380017217.01.T01 | AT1G05380 | 32.767 | 412 | 268 | 4 | 425 | 832 | 519 | 925 | 2.81e-67 | 244 |
| MsG0380017217.01.T01 | AT5G36740 | 32.339 | 436 | 279 | 7 | 406 | 836 | 529 | 953 | 3.36e-67 | 243 |
| MsG0380017217.01.T01 | AT5G36740 | 32.339 | 436 | 279 | 7 | 406 | 836 | 529 | 953 | 3.36e-67 | 243 |
| MsG0380017217.01.T01 | AT5G58610 | 39.319 | 323 | 189 | 5 | 425 | 742 | 589 | 909 | 1.04e-65 | 237 |
| MsG0380017217.01.T01 | AT5G36740 | 31.614 | 446 | 279 | 8 | 406 | 836 | 376 | 810 | 3.15e-64 | 234 |
| MsG0380017217.01.T01 | AT3G14980 | 31.690 | 426 | 263 | 7 | 425 | 838 | 575 | 984 | 5.87e-64 | 234 |
| MsG0380017217.01.T01 | AT3G14980 | 31.690 | 426 | 263 | 7 | 425 | 838 | 620 | 1029 | 7.11e-64 | 234 |
| MsG0380017217.01.T01 | AT3G14980 | 31.690 | 426 | 263 | 7 | 425 | 838 | 620 | 1029 | 7.11e-64 | 234 |
| MsG0380017217.01.T01 | AT3G14980 | 31.690 | 426 | 263 | 7 | 425 | 838 | 620 | 1029 | 7.11e-64 | 234 |
| MsG0380017217.01.T01 | AT3G14980 | 31.690 | 426 | 263 | 7 | 425 | 838 | 620 | 1029 | 1.51e-63 | 232 |
| MsG0380017217.01.T01 | AT5G36670 | 30.973 | 452 | 278 | 9 | 406 | 836 | 529 | 967 | 1.84e-60 | 223 |
| MsG0380017217.01.T01 | AT5G36670 | 30.973 | 452 | 278 | 9 | 406 | 836 | 529 | 967 | 1.84e-60 | 223 |
| MsG0380017217.01.T01 | AT4G14920 | 30.310 | 419 | 281 | 5 | 422 | 836 | 576 | 987 | 2.97e-58 | 217 |
| MsG0380017217.01.T01 | AT4G14920 | 30.310 | 419 | 281 | 5 | 422 | 836 | 576 | 987 | 2.97e-58 | 217 |
| MsG0380017217.01.T01 | AT4G14920 | 30.310 | 419 | 281 | 5 | 422 | 836 | 576 | 987 | 3.17e-58 | 216 |
| MsG0380017217.01.T01 | AT5G36670 | 30.303 | 462 | 278 | 10 | 406 | 836 | 376 | 824 | 3.30e-57 | 213 |
| MsG0380017217.01.T01 | AT5G36670 | 30.303 | 462 | 278 | 10 | 406 | 836 | 529 | 977 | 5.44e-57 | 213 |
| MsG0380017217.01.T01 | AT5G36740 | 32.620 | 374 | 236 | 7 | 406 | 774 | 529 | 891 | 6.18e-57 | 211 |
| MsG0380017217.01.T01 | AT5G36740 | 32.620 | 374 | 236 | 7 | 406 | 774 | 529 | 891 | 6.18e-57 | 211 |
| MsG0380017217.01.T01 | AT5G36670 | 32.620 | 374 | 236 | 7 | 406 | 774 | 529 | 891 | 6.18e-57 | 211 |
| MsG0380017217.01.T01 | AT5G63900 | 33.236 | 343 | 194 | 10 | 504 | 836 | 227 | 544 | 9.25e-52 | 191 |
| MsG0380017217.01.T01 | AT3G14980 | 31.722 | 331 | 198 | 7 | 425 | 743 | 620 | 934 | 1.17e-45 | 177 |
| MsG0380017217.01.T01 | AT2G37520 | 27.126 | 435 | 230 | 13 | 460 | 834 | 410 | 817 | 1.32e-40 | 161 |
| MsG0380017217.01.T01 | AT3G53680 | 29.146 | 398 | 213 | 13 | 460 | 807 | 427 | 805 | 3.81e-38 | 154 |
| MsG0380017217.01.T01 | AT3G53680 | 29.146 | 398 | 213 | 13 | 460 | 807 | 429 | 807 | 4.62e-38 | 153 |
| MsG0380017217.01.T01 | AT2G36720 | 24.486 | 486 | 271 | 11 | 409 | 832 | 522 | 973 | 2.08e-36 | 149 |
| MsG0380017217.01.T01 | AT2G36720 | 24.486 | 486 | 271 | 11 | 409 | 832 | 522 | 973 | 2.08e-36 | 149 |
| MsG0380017217.01.T01 | AT2G27980 | 26.434 | 488 | 261 | 13 | 421 | 835 | 598 | 1060 | 1.84e-35 | 145 |
Find 143 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCACTCTCGCTGGATTTA+AGG | 0.128168 | 3:+93430478 | MsG0380017217.01.T01:CDS |
| AAAACAACATCTTCTTTCTT+TGG | 0.186886 | 3:+93429209 | MsG0380017217.01.T01:CDS |
| TATTACTTTCTTAGAATTTC+AGG | 0.193107 | 3:+93431519 | MsG0380017217.01.T01:CDS |
| CACCATTCTCTTACAGCTTC+TGG | 0.208379 | 3:-93429123 | None:intergenic |
| ATAAGATTCAATTTAGTATT+AGG | 0.210355 | 3:+93431589 | MsG0380017217.01.T01:CDS |
| AATCTTATCAAAGGCCATTT+AGG | 0.221992 | 3:-93431574 | None:intergenic |
| GTTTGTTCTATTTGTGGTTT+TGG | 0.227006 | 3:+93430656 | MsG0380017217.01.T01:CDS |
| TTGTCCTCGATGTTCTTTAT+TGG | 0.261579 | 3:-93431338 | None:intergenic |
| TGGTTTCTATAATGTGATTT+TGG | 0.261940 | 3:+93431237 | MsG0380017217.01.T01:CDS |
| CCAACAATTGATGCTTTAAC+TGG | 0.273315 | 3:+93431151 | MsG0380017217.01.T01:CDS |
| GTGGCTACCATAAGGATTTA+TGG | 0.283165 | 3:+93431283 | MsG0380017217.01.T01:CDS |
| TTTCTTTGGGTTGGAAGCTT+TGG | 0.293261 | 3:+93429223 | MsG0380017217.01.T01:CDS |
| ATCATCCACTAGTATCTTCT+TGG | 0.299268 | 3:+93430526 | MsG0380017217.01.T01:CDS |
| AAACAACATCTTCTTTCTTT+GGG | 0.299298 | 3:+93429210 | MsG0380017217.01.T01:CDS |
| ATTATTGTTGCTGCTGTTAC+TGG | 0.303084 | 3:-93429384 | None:intergenic |
| TATTAAATAGAGAAGGTATA+AGG | 0.305895 | 3:+93430312 | MsG0380017217.01.T01:CDS |
| AGATTATCCGCAACCTTAAC+TGG | 0.315691 | 3:-93431004 | None:intergenic |
| GTTGATAAAGAATAAAGTTT+TGG | 0.317891 | 3:+93430358 | MsG0380017217.01.T01:CDS |
| AAAGGTATTCACTTGTTTCT+TGG | 0.322354 | 3:+93430336 | MsG0380017217.01.T01:CDS |
| GTACATTCTTGTTTACGTTT+AGG | 0.328883 | 3:-93430800 | None:intergenic |
| AACCACTGAAGAAACCTAAA+TGG | 0.332081 | 3:+93431560 | MsG0380017217.01.T01:CDS |
| TCAGGCACTATGTTCATATC+AGG | 0.336590 | 3:-93429093 | None:intergenic |
| AGAGAATGGTGCCGCTTAAC+AGG | 0.346625 | 3:+93429135 | MsG0380017217.01.T01:CDS |
| GAAAATGGAGGAAGTGATTT+CGG | 0.358446 | 3:+93431261 | MsG0380017217.01.T01:CDS |
| GACACATGGACAAAATCTTT+TGG | 0.362557 | 3:+93431454 | MsG0380017217.01.T01:CDS |
| GATACTGTTTGTTCTATTTG+TGG | 0.366590 | 3:+93430650 | MsG0380017217.01.T01:CDS |
| AACAAGAATATTGTTATCAT+TGG | 0.367054 | 3:-93430828 | None:intergenic |
| GCAATATAGTTTGCGCGAAC+AGG | 0.368324 | 3:+93430951 | MsG0380017217.01.T01:CDS |
| GGTTTCTCTTTCAACTGTAA+TGG | 0.368815 | 3:-93429885 | None:intergenic |
| GAGAAACAATTGACTCGCTT+TGG | 0.374118 | 3:+93431391 | MsG0380017217.01.T01:CDS |
| GTGAGCAGAAATTTCACTTT+GGG | 0.378660 | 3:+93430861 | MsG0380017217.01.T01:CDS |
| TTTAGATCTTGATCGAGTTC+CGG | 0.381635 | 3:+93430730 | MsG0380017217.01.T01:CDS |
| GTTACTGGTGCTGCAGTTGA+AGG | 0.385036 | 3:-93429369 | None:intergenic |
| ATCGAGTTCCGGATGGTGAT+TGG | 0.385313 | 3:+93430741 | MsG0380017217.01.T01:CDS |
| TAGGTTTCTTCAGTGGTTTA+AGG | 0.387281 | 3:-93431555 | None:intergenic |
| CCAGTTAAAGCATCAATTGT+TGG | 0.391070 | 3:-93431151 | None:intergenic |
| CCTTCGGTTGCACTTTCAGC+TGG | 0.398742 | 3:-93429758 | None:intergenic |
| TGCTATTGCTGCTGCTTCCT+CGG | 0.398745 | 3:-93430114 | None:intergenic |
| AACATCTTCTTTCTTTGGGT+TGG | 0.401046 | 3:+93429214 | MsG0380017217.01.T01:CDS |
| CGACAACAACATCAATATAT+TGG | 0.408399 | 3:+93429592 | MsG0380017217.01.T01:CDS |
| TCCTCGATGTTCTTTATTGG+TGG | 0.411517 | 3:-93431335 | None:intergenic |
| ATTAAATAGAGAAGGTATAA+GGG | 0.424847 | 3:+93430313 | MsG0380017217.01.T01:CDS |
| AGTCGCTCAATCGACTGAAA+TGG | 0.435511 | 3:-93429819 | None:intergenic |
| GCTTCTTCCTCGGATTCTCT+TGG | 0.442664 | 3:-93429570 | None:intergenic |
| CTTTGAATTGACTTCTAATG+AGG | 0.442824 | 3:+93430151 | MsG0380017217.01.T01:CDS |
| TAAACCGGAAGTTACTAATT+CGG | 0.448302 | 3:+93430265 | MsG0380017217.01.T01:CDS |
| TTTGGGTGTGTAAAGGCAAC+AGG | 0.448561 | 3:+93430878 | MsG0380017217.01.T01:CDS |
| ATTTGCTTCATAGTTTGCTT+CGG | 0.449437 | 3:-93430624 | None:intergenic |
| TGTTGTTGTCGCTTCTTCCT+CGG | 0.452875 | 3:-93429580 | None:intergenic |
| ACTGATACCTCGGATTCCTT+CGG | 0.453162 | 3:-93429774 | None:intergenic |
| ATTGAGCGACTGAGAGCATC+TGG | 0.454882 | 3:+93429831 | MsG0380017217.01.T01:CDS |
| AGGAATGCGTCGTTTGTTGA+TGG | 0.462361 | 3:+93431360 | MsG0380017217.01.T01:CDS |
| GCTATTGTGGAAACCAGTTA+AGG | 0.464746 | 3:+93430991 | MsG0380017217.01.T01:CDS |
| ACTAGTATCTTCTTGGAAGA+TGG | 0.470828 | 3:+93430533 | MsG0380017217.01.T01:CDS |
| GCATGTGATTCAATCTAAAC+CGG | 0.473942 | 3:+93430250 | MsG0380017217.01.T01:CDS |
| GGTTGCACTTTCAGCTGGAA+TGG | 0.474012 | 3:-93429753 | None:intergenic |
| TACTACATTATCAACATCAA+TGG | 0.474099 | 3:+93430217 | MsG0380017217.01.T01:CDS |
| GTTATACTTCTCCTAACAAT+GGG | 0.474735 | 3:+93429277 | MsG0380017217.01.T01:CDS |
| TGATTTCGGTGGCTACCATA+AGG | 0.474912 | 3:+93431275 | MsG0380017217.01.T01:CDS |
| CTTGTGACCATAAATCCTTA+TGG | 0.478256 | 3:-93431290 | None:intergenic |
| TTCTTCAATGCAACTCTCGC+AGG | 0.478869 | 3:-93429325 | None:intergenic |
| GGAAGATGGAAGGTCGTTGT+TGG | 0.479840 | 3:+93430547 | MsG0380017217.01.T01:CDS |
| CCCACCGAATTAGTAACTTC+CGG | 0.484863 | 3:-93430269 | None:intergenic |
| TCGCTCTTTAGAAAGTAAAC+AGG | 0.485992 | 3:-93429547 | None:intergenic |
| GCTGCTTCCTCGGATTCACT+TGG | 0.486702 | 3:-93430104 | None:intergenic |
| CTGCAGTTGAAGGGTGTTTG+AGG | 0.486894 | 3:-93429359 | None:intergenic |
| TGCTCTAGCTACTGCTTCCT+CGG | 0.490289 | 3:-93429448 | None:intergenic |
| TCCTCTTGCTACTGATACCT+CGG | 0.491108 | 3:-93429784 | None:intergenic |
| ATTTCACTTTGGGTGTGTAA+AGG | 0.492058 | 3:+93430871 | MsG0380017217.01.T01:CDS |
| TAAAGATAGTGCTGGTAGAA+AGG | 0.492174 | 3:+93429170 | MsG0380017217.01.T01:CDS |
| TGTTGTTGCTGCTGCTTCCA+CGG | 0.492759 | 3:-93429649 | None:intergenic |
| AGTTGCTCATTCGACTGTAA+TGG | 0.494258 | 3:-93429618 | None:intergenic |
| AGTCGCTCTTTCGACTGTAA+TGG | 0.504195 | 3:-93429687 | None:intergenic |
| AGTCGCTCTTTCGACTGTAA+TGG | 0.504195 | 3:-93429951 | None:intergenic |
| CCATGTGTCTATAGCATCCT+CGG | 0.512950 | 3:-93431440 | None:intergenic |
| TGTGAGCAGAAATTTCACTT+TGG | 0.513785 | 3:+93430860 | MsG0380017217.01.T01:CDS |
| CGTTATACTTCTCCTAACAA+TGG | 0.516763 | 3:+93429276 | MsG0380017217.01.T01:CDS |
| TGCAGTTGAAGGGTGTTTGA+GGG | 0.525454 | 3:-93429358 | None:intergenic |
| ACTGCTTCCTCAGATTCTCT+CGG | 0.534592 | 3:-93429906 | None:intergenic |
| ACTGCTTCCTCGGATTCTCT+AGG | 0.535233 | 3:-93429438 | None:intergenic |
| TGCGAGAGTTGCATTGAAGA+AGG | 0.537811 | 3:+93429327 | MsG0380017217.01.T01:CDS |
| GTTACTAATTCGGTGGGTAG+TGG | 0.540215 | 3:+93430275 | MsG0380017217.01.T01:CDS |
| CAGGCACTATGTTCATATCA+GGG | 0.543358 | 3:-93429092 | None:intergenic |
| CTCATTAGAAGTCAATTCAA+AGG | 0.543407 | 3:-93430150 | None:intergenic |
| TTACTGGTGCTGCAGTTGAA+GGG | 0.544490 | 3:-93429368 | None:intergenic |
| AAGATACTAGTGGATGATGT+AGG | 0.545362 | 3:-93430521 | None:intergenic |
| GTGGAAACCAGTTAAGGTTG+CGG | 0.547741 | 3:+93430997 | MsG0380017217.01.T01:CDS |
| ACAGCTTCTGGACAATGCTC+AGG | 0.548245 | 3:-93429111 | None:intergenic |
| TTTAACAGAAATGAAACTAG+AGG | 0.548944 | 3:-93430183 | None:intergenic |
| ATAGAGAAGGTATAAGGGAA+AGG | 0.549390 | 3:+93430318 | MsG0380017217.01.T01:CDS |
| CGGTGGGTAGTGGTAAAAGA+GGG | 0.549718 | 3:+93430285 | MsG0380017217.01.T01:CDS |
| GTCCAGAAGCTGTAAGAGAA+TGG | 0.553572 | 3:+93429121 | MsG0380017217.01.T01:CDS |
| ACTAAATTGAATCTTATCAA+AGG | 0.553822 | 3:-93431583 | None:intergenic |
| TCGGTGGGTAGTGGTAAAAG+AGG | 0.553960 | 3:+93430284 | MsG0380017217.01.T01:CDS |
| GTCGTTGTTGGAATGTCAAA+GGG | 0.560420 | 3:+93430559 | MsG0380017217.01.T01:CDS |
| GGTCGTTGTTGGAATGTCAA+AGG | 0.562897 | 3:+93430558 | MsG0380017217.01.T01:CDS |
| GGGATGGTATTAAATAGAGA+AGG | 0.564639 | 3:+93430305 | MsG0380017217.01.T01:CDS |
| GGCCATTTAGGTTTCTTCAG+TGG | 0.564961 | 3:-93431562 | None:intergenic |
| GTCACAATGTTGTTACAAGC+GGG | 0.572482 | 3:+93430411 | MsG0380017217.01.T01:CDS |
| ACCGGAAGTTACTAATTCGG+TGG | 0.573180 | 3:+93430268 | MsG0380017217.01.T01:CDS |
| AGGTTGCGGATAATCTAACT+TGG | 0.576168 | 3:+93431011 | MsG0380017217.01.T01:CDS |
| GGACAGAACCAATCACCATC+CGG | 0.576643 | 3:-93430749 | None:intergenic |
| AGAGAAACCGAGAGAATCTG+AGG | 0.577170 | 3:+93429899 | MsG0380017217.01.T01:CDS |
| GGGACTAATGTGCTCTGTCG+TGG | 0.584268 | 3:+93430386 | MsG0380017217.01.T01:CDS |
| TATGTCTAAAGAAGCTATTG+TGG | 0.590646 | 3:+93430978 | MsG0380017217.01.T01:CDS |
| CATAAGGATTTATGGTCACA+AGG | 0.591190 | 3:+93431291 | MsG0380017217.01.T01:CDS |
| GATCTTGTAGTCCTGTTAAG+CGG | 0.594532 | 3:-93429146 | None:intergenic |
| CAAGATCGTAAAGATAGTGC+TGG | 0.595589 | 3:+93429162 | MsG0380017217.01.T01:CDS |
| AATAAAGAACATCGAGGACA+AGG | 0.599710 | 3:+93431340 | MsG0380017217.01.T01:CDS |
| AGAGCGACTGAGAGAATCTG+AGG | 0.606930 | 3:+93429701 | MsG0380017217.01.T01:CDS |
| GTATCTTCTTGGAAGATGGA+AGG | 0.608492 | 3:+93430537 | MsG0380017217.01.T01:CDS |
| TCGCTTTGGAGTAGAAAGCA+TGG | 0.612726 | 3:+93431405 | MsG0380017217.01.T01:CDS |
| CAACTGAGGTGGAATACAGA+AGG | 0.615320 | 3:-93430707 | None:intergenic |
| CAAGATCTAAACAACTGAGG+TGG | 0.615408 | 3:-93430718 | None:intergenic |
| AAAGAAGCGTAAGTTAAATG+TGG | 0.618501 | 3:+93431099 | MsG0380017217.01.T01:CDS |
| GATCTTGATCGAGTTCCGGA+TGG | 0.620225 | 3:+93430734 | MsG0380017217.01.T01:CDS |
| AGAGCGACCAAGAGAATCCG+AGG | 0.620291 | 3:+93429563 | MsG0380017217.01.T01:CDS |
| AATGTGAATAGTGATGATGA+TGG | 0.621059 | 3:+93431046 | MsG0380017217.01.T01:CDS |
| ATCTTCCAAGAAGATACTAG+TGG | 0.622444 | 3:-93430531 | None:intergenic |
| CCGGAAGTTACTAATTCGGT+GGG | 0.625187 | 3:+93430269 | MsG0380017217.01.T01:CDS |
| AGAGCGACTGAGAGAATGCG+AGG | 0.629289 | 3:+93429965 | MsG0380017217.01.T01:CDS |
| AGTCACAATGTTGTTACAAG+CGG | 0.630781 | 3:+93430410 | MsG0380017217.01.T01:CDS |
| CCAGCTGAAAGTGCAACCGA+AGG | 0.631294 | 3:+93429758 | MsG0380017217.01.T01:CDS |
| GAGAGTTGCATTGAAGAAGG+AGG | 0.635933 | 3:+93429330 | MsG0380017217.01.T01:CDS |
| AAAGCGACCTAGAGAATCCG+AGG | 0.636201 | 3:+93429431 | MsG0380017217.01.T01:CDS |
| AGAGTTGCATTGAAGAAGGA+GGG | 0.637310 | 3:+93429331 | MsG0380017217.01.T01:CDS |
| TGAGCAACTGAGAGAATCCG+TGG | 0.638615 | 3:+93429632 | MsG0380017217.01.T01:CDS |
| CCGAGGATGCTATAGACACA+TGG | 0.641134 | 3:+93431440 | MsG0380017217.01.T01:CDS |
| AAAGCAACCAAGTGAATCCG+AGG | 0.642797 | 3:+93430097 | MsG0380017217.01.T01:CDS |
| GGGTAGTGGTAAAAGAGGGA+TGG | 0.643359 | 3:+93430289 | MsG0380017217.01.T01:CDS |
| GGCACTATGTTCATATCAGG+GGG | 0.651855 | 3:-93429090 | None:intergenic |
| AGGCACTATGTTCATATCAG+GGG | 0.652316 | 3:-93429091 | None:intergenic |
| GGAGCGACAGAGAAAATCTG+AGG | 0.653734 | 3:+93429497 | MsG0380017217.01.T01:CDS |
| CATCACTGATAAAAGAGCAA+CGG | 0.654608 | 3:+93430018 | MsG0380017217.01.T01:CDS |
| AGGATATAAATCTAGTCACA+TGG | 0.655176 | 3:+93430898 | MsG0380017217.01.T01:CDS |
| TCCGAGGTATCAGTAGCAAG+AGG | 0.658945 | 3:+93429783 | MsG0380017217.01.T01:CDS |
| AGTGCAACCGAAGGAATCCG+AGG | 0.659623 | 3:+93429767 | MsG0380017217.01.T01:CDS |
| AATGGAGGAAGTGATTTCGG+TGG | 0.688617 | 3:+93431264 | MsG0380017217.01.T01:CDS |
| GATCAAGATCTAAACAACTG+AGG | 0.693653 | 3:-93430721 | None:intergenic |
| GCTGGATTTAAGGATCACGC+TGG | 0.704084 | 3:+93430488 | MsG0380017217.01.T01:CDS |
| GTGAATAGTGATGATGATGG+CGG | 0.708734 | 3:+93431049 | MsG0380017217.01.T01:CDS |
| TGTTGATAATGTAGTAACCG+TGG | 0.738318 | 3:-93430210 | None:intergenic |
| GCCACCAATAAAGAACATCG+AGG | 0.783033 | 3:+93431334 | MsG0380017217.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGATTCAATTTAGTATT+AGG | + | Chr3:93431589-93431608 | MsG0380017217.01.T01:CDS | 15.0% |
| !! | AACAAGAATATTGTTATCAT+TGG | - | Chr3:93430831-93430850 | None:intergenic | 20.0% |
| !! | ACTAAATTGAATCTTATCAA+AGG | - | Chr3:93431586-93431605 | None:intergenic | 20.0% |
| !! | GTAATGTTAAAAAGAAGAAT+TGG | + | Chr3:93430924-93430943 | MsG0380017217.01.T01:CDS | 20.0% |
| !! | TATTACTTTCTTAGAATTTC+AGG | + | Chr3:93431519-93431538 | MsG0380017217.01.T01:CDS | 20.0% |
| !!! | ATTAAATAGAGAAGGTATAA+GGG | + | Chr3:93430313-93430332 | MsG0380017217.01.T01:CDS | 20.0% |
| !!! | GTTGATAAAGAATAAAGTTT+TGG | + | Chr3:93430358-93430377 | MsG0380017217.01.T01:CDS | 20.0% |
| !!! | TATTAAATAGAGAAGGTATA+AGG | + | Chr3:93430312-93430331 | MsG0380017217.01.T01:CDS | 20.0% |
| ! | AAAACAACATCTTCTTTCTT+TGG | + | Chr3:93429209-93429228 | MsG0380017217.01.T01:CDS | 25.0% |
| ! | AAACAACATCTTCTTTCTTT+GGG | + | Chr3:93429210-93429229 | MsG0380017217.01.T01:CDS | 25.0% |
| ! | TACTACATTATCAACATCAA+TGG | + | Chr3:93430217-93430236 | MsG0380017217.01.T01:CDS | 25.0% |
| ! | TTTAACAGAAATGAAACTAG+AGG | - | Chr3:93430186-93430205 | None:intergenic | 25.0% |
| !! | TGGTTTCTATAATGTGATTT+TGG | + | Chr3:93431237-93431256 | MsG0380017217.01.T01:CDS | 25.0% |
| !!! | AAGAATAAAGTTTTGGTTTC+AGG | + | Chr3:93430365-93430384 | MsG0380017217.01.T01:CDS | 25.0% |
| !!! | AGAATAAAGTTTTGGTTTCA+GGG | + | Chr3:93430366-93430385 | MsG0380017217.01.T01:CDS | 25.0% |
| !!! | AGGCTTTTTTAAGAGTAATA+TGG | - | Chr3:93429308-93429327 | None:intergenic | 25.0% |
| !!! | TAATGTGATTTTGGAGAAAA+TGG | + | Chr3:93431246-93431265 | MsG0380017217.01.T01:CDS | 25.0% |
| AATCTTATCAAAGGCCATTT+AGG | - | Chr3:93431577-93431596 | None:intergenic | 30.0% | |
| AGGATATAAATCTAGTCACA+TGG | + | Chr3:93430898-93430917 | MsG0380017217.01.T01:CDS | 30.0% | |
| CATTTCTGTTAAAAAAGCCA+CGG | + | Chr3:93430193-93430212 | MsG0380017217.01.T01:CDS | 30.0% | |
| CGACAACAACATCAATATAT+TGG | + | Chr3:93429592-93429611 | MsG0380017217.01.T01:CDS | 30.0% | |
| CTCATTAGAAGTCAATTCAA+AGG | - | Chr3:93430153-93430172 | None:intergenic | 30.0% | |
| CTTTGGTACATTGACAAAAA+TGG | + | Chr3:93429240-93429259 | MsG0380017217.01.T01:CDS | 30.0% | |
| GATACTGTTTGTTCTATTTG+TGG | + | Chr3:93430650-93430669 | MsG0380017217.01.T01:CDS | 30.0% | |
| GTTATACTTCTCCTAACAAT+GGG | + | Chr3:93429277-93429296 | MsG0380017217.01.T01:CDS | 30.0% | |
| TAAACCGGAAGTTACTAATT+CGG | + | Chr3:93430265-93430284 | MsG0380017217.01.T01:CDS | 30.0% | |
| TATGTCTAAAGAAGCTATTG+TGG | + | Chr3:93430978-93430997 | MsG0380017217.01.T01:CDS | 30.0% | |
| ! | AAAGAAGCGTAAGTTAAATG+TGG | + | Chr3:93431099-93431118 | MsG0380017217.01.T01:CDS | 30.0% |
| ! | AATGTGAATAGTGATGATGA+TGG | + | Chr3:93431046-93431065 | MsG0380017217.01.T01:CDS | 30.0% |
| ! | ATATGGTTTTTCCCATTGTT+AGG | - | Chr3:93429291-93429310 | None:intergenic | 30.0% |
| ! | CATATTTTGCAACAACAAGT+TGG | - | Chr3:93430773-93430792 | None:intergenic | 30.0% |
| ! | CTTTGAATTGACTTCTAATG+AGG | + | Chr3:93430151-93430170 | MsG0380017217.01.T01:CDS | 30.0% |
| ! | GTACATTCTTGTTTACGTTT+AGG | - | Chr3:93430803-93430822 | None:intergenic | 30.0% |
| ! | GTTTGTTCTATTTGTGGTTT+TGG | + | Chr3:93430656-93430675 | MsG0380017217.01.T01:CDS | 30.0% |
| !! | AAAGGTATTCACTTGTTTCT+TGG | + | Chr3:93430336-93430355 | MsG0380017217.01.T01:CDS | 30.0% |
| !! | ATTTGCTTCATAGTTTGCTT+CGG | - | Chr3:93430627-93430646 | None:intergenic | 30.0% |
| !!! | AATTTTAATTTCACTCTCGC+TGG | + | Chr3:93430470-93430489 | MsG0380017217.01.T01:CDS | 30.0% |
| !!! | CAAAATCTTTTGGTTTTGAG+AGG | + | Chr3:93431464-93431483 | MsG0380017217.01.T01:CDS | 30.0% |
| AACATCTTCTTTCTTTGGGT+TGG | + | Chr3:93429214-93429233 | MsG0380017217.01.T01:CDS | 35.0% | |
| AACCACTGAAGAAACCTAAA+TGG | + | Chr3:93431560-93431579 | MsG0380017217.01.T01:CDS | 35.0% | |
| AATAAAGAACATCGAGGACA+AGG | + | Chr3:93431340-93431359 | MsG0380017217.01.T01:CDS | 35.0% | |
| ACATTGACAAAAATGGTAGG+AGG | + | Chr3:93429247-93429266 | MsG0380017217.01.T01:CDS | 35.0% | |
| ACTAGTATCTTCTTGGAAGA+TGG | + | Chr3:93430533-93430552 | MsG0380017217.01.T01:CDS | 35.0% | |
| AGTCACAATGTTGTTACAAG+CGG | + | Chr3:93430410-93430429 | MsG0380017217.01.T01:CDS | 35.0% | |
| ATCATCCACTAGTATCTTCT+TGG | + | Chr3:93430526-93430545 | MsG0380017217.01.T01:CDS | 35.0% | |
| ATCTTCCAAGAAGATACTAG+TGG | - | Chr3:93430534-93430553 | None:intergenic | 35.0% | |
| ATTATTGTTGCTGCTGTTAC+TGG | - | Chr3:93429387-93429406 | None:intergenic | 35.0% | |
| ATTTCACTTTGGGTGTGTAA+AGG | + | Chr3:93430871-93430890 | MsG0380017217.01.T01:CDS | 35.0% | |
| CATAAGGATTTATGGTCACA+AGG | + | Chr3:93431291-93431310 | MsG0380017217.01.T01:CDS | 35.0% | |
| CATCACTGATAAAAGAGCAA+CGG | + | Chr3:93430018-93430037 | MsG0380017217.01.T01:CDS | 35.0% | |
| CATTGACAAAAATGGTAGGA+GGG | + | Chr3:93429248-93429267 | MsG0380017217.01.T01:CDS | 35.0% | |
| CCAACAATTGATGCTTTAAC+TGG | + | Chr3:93431151-93431170 | MsG0380017217.01.T01:CDS | 35.0% | |
| CGTTATACTTCTCCTAACAA+TGG | + | Chr3:93429276-93429295 | MsG0380017217.01.T01:CDS | 35.0% | |
| CTTGTGACCATAAATCCTTA+TGG | - | Chr3:93431293-93431312 | None:intergenic | 35.0% | |
| GAAAATGGAGGAAGTGATTT+CGG | + | Chr3:93431261-93431280 | MsG0380017217.01.T01:CDS | 35.0% | |
| GATCAAGATCTAAACAACTG+AGG | - | Chr3:93430724-93430743 | None:intergenic | 35.0% | |
| GCATGTGATTCAATCTAAAC+CGG | + | Chr3:93430250-93430269 | MsG0380017217.01.T01:CDS | 35.0% | |
| GGGATGGTATTAAATAGAGA+AGG | + | Chr3:93430305-93430324 | MsG0380017217.01.T01:CDS | 35.0% | |
| GGTACATTGACAAAAATGGT+AGG | + | Chr3:93429244-93429263 | MsG0380017217.01.T01:CDS | 35.0% | |
| GGTTTCTCTTTCAACTGTAA+TGG | - | Chr3:93429888-93429907 | None:intergenic | 35.0% | |
| GTGAGCAGAAATTTCACTTT+GGG | + | Chr3:93430861-93430880 | MsG0380017217.01.T01:CDS | 35.0% | |
| TAGGTTTCTTCAGTGGTTTA+AGG | - | Chr3:93431558-93431577 | None:intergenic | 35.0% | |
| TGTGAGCAGAAATTTCACTT+TGG | + | Chr3:93430860-93430879 | MsG0380017217.01.T01:CDS | 35.0% | |
| TTGTCCTCGATGTTCTTTAT+TGG | - | Chr3:93431341-93431360 | None:intergenic | 35.0% | |
| TTTAGATCTTGATCGAGTTC+CGG | + | Chr3:93430730-93430749 | MsG0380017217.01.T01:CDS | 35.0% | |
| ! | AAGATACTAGTGGATGATGT+AGG | - | Chr3:93430524-93430543 | None:intergenic | 35.0% |
| ! | ATAGAGAAGGTATAAGGGAA+AGG | + | Chr3:93430318-93430337 | MsG0380017217.01.T01:CDS | 35.0% |
| ! | CCAGTTAAAGCATCAATTGT+TGG | - | Chr3:93431154-93431173 | None:intergenic | 35.0% |
| ! | GACACATGGACAAAATCTTT+TGG | + | Chr3:93431454-93431473 | MsG0380017217.01.T01:CDS | 35.0% |
| ! | TCGCTCTTTAGAAAGTAAAC+AGG | - | Chr3:93429550-93429569 | None:intergenic | 35.0% |
| ! | TTTTTCTCAACTACAGCTGA+AGG | + | Chr3:93429476-93429495 | MsG0380017217.01.T01:CDS | 35.0% |
| !! | TAAAGATAGTGCTGGTAGAA+AGG | + | Chr3:93429170-93429189 | MsG0380017217.01.T01:CDS | 35.0% |
| !! | TGTGATTTTGGAGAAAATGG+AGG | + | Chr3:93431249-93431268 | MsG0380017217.01.T01:CDS | 35.0% |
| !! | TGTTGATAATGTAGTAACCG+TGG | - | Chr3:93430213-93430232 | None:intergenic | 35.0% |
| !!! | TGTTCTATTTGTGGTTTTGG+AGG | + | Chr3:93430659-93430678 | MsG0380017217.01.T01:CDS | 35.0% |
| AGAGTTGCATTGAAGAAGGA+GGG | + | Chr3:93429331-93429350 | MsG0380017217.01.T01:CDS | 40.0% | |
| AGATTATCCGCAACCTTAAC+TGG | - | Chr3:93431007-93431026 | None:intergenic | 40.0% | |
| AGGCACTATGTTCATATCAG+GGG | - | Chr3:93429094-93429113 | None:intergenic | 40.0% | |
| AGGTTGCGGATAATCTAACT+TGG | + | Chr3:93431011-93431030 | MsG0380017217.01.T01:CDS | 40.0% | |
| AGTTGCTCATTCGACTGTAA+TGG | - | Chr3:93429621-93429640 | None:intergenic | 40.0% | |
| CAAGATCGTAAAGATAGTGC+TGG | + | Chr3:93429162-93429181 | MsG0380017217.01.T01:CDS | 40.0% | |
| CAAGATCTAAACAACTGAGG+TGG | - | Chr3:93430721-93430740 | None:intergenic | 40.0% | |
| CAGGCACTATGTTCATATCA+GGG | - | Chr3:93429095-93429114 | None:intergenic | 40.0% | |
| GATCTTGTAGTCCTGTTAAG+CGG | - | Chr3:93429149-93429168 | None:intergenic | 40.0% | |
| GCTATTGTGGAAACCAGTTA+AGG | + | Chr3:93430991-93431010 | MsG0380017217.01.T01:CDS | 40.0% | |
| GTATCTTCTTGGAAGATGGA+AGG | + | Chr3:93430537-93430556 | MsG0380017217.01.T01:CDS | 40.0% | |
| GTCACAATGTTGTTACAAGC+GGG | + | Chr3:93430411-93430430 | MsG0380017217.01.T01:CDS | 40.0% | |
| GTCGTTGTTGGAATGTCAAA+GGG | + | Chr3:93430559-93430578 | MsG0380017217.01.T01:CDS | 40.0% | |
| GTGGCTACCATAAGGATTTA+TGG | + | Chr3:93431283-93431302 | MsG0380017217.01.T01:CDS | 40.0% | |
| TCAGGCACTATGTTCATATC+AGG | - | Chr3:93429096-93429115 | None:intergenic | 40.0% | |
| TCCTCGATGTTCTTTATTGG+TGG | - | Chr3:93431338-93431357 | None:intergenic | 40.0% | |
| TTTCACTCTCGCTGGATTTA+AGG | + | Chr3:93430478-93430497 | MsG0380017217.01.T01:CDS | 40.0% | |
| ! | CATAAGCGCTTGAACTTTTG+TGG | + | Chr3:93431217-93431236 | MsG0380017217.01.T01:CDS | 40.0% |
| ! | CGTTGCTCTTTTATCAGTGA+TGG | - | Chr3:93430020-93430039 | None:intergenic | 40.0% |
| !! | AGCGGGAGTATATTTTGTGA+TGG | + | Chr3:93430428-93430447 | MsG0380017217.01.T01:CDS | 40.0% |
| !! | GAGAAACAATTGACTCGCTT+TGG | + | Chr3:93431391-93431410 | MsG0380017217.01.T01:CDS | 40.0% |
| !! | GTGAATAGTGATGATGATGG+CGG | + | Chr3:93431049-93431068 | MsG0380017217.01.T01:CDS | 40.0% |
| !! | TTTCTTTGGGTTGGAAGCTT+TGG | + | Chr3:93429223-93429242 | MsG0380017217.01.T01:CDS | 40.0% |
| !!! | GGTTGCTTTTTCGACTGTAA+TGG | - | Chr3:93430086-93430105 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTGAGAGGATGAC+AGG | + | Chr3:93431472-93431491 | MsG0380017217.01.T01:CDS | 40.0% |
| AAAGCAACCAAGTGAATCCG+AGG | + | Chr3:93430097-93430116 | MsG0380017217.01.T01:CDS | 45.0% | |
| AATGGAGGAAGTGATTTCGG+TGG | + | Chr3:93431264-93431283 | MsG0380017217.01.T01:CDS | 45.0% | |
| ACCGGAAGTTACTAATTCGG+TGG | + | Chr3:93430268-93430287 | MsG0380017217.01.T01:CDS | 45.0% | |
| ACTGATACCTCGGATTCCTT+CGG | - | Chr3:93429777-93429796 | None:intergenic | 45.0% | |
| ACTGCTTCCTCAGATTCTCT+CGG | - | Chr3:93429909-93429928 | None:intergenic | 45.0% | |
| AGAGAAACCGAGAGAATCTG+AGG | + | Chr3:93429899-93429918 | MsG0380017217.01.T01:CDS | 45.0% | |
| AGTCGCTCAATCGACTGAAA+TGG | - | Chr3:93429822-93429841 | None:intergenic | 45.0% | |
| AGTCGCTCTTTCGACTGTAA+TGG | - | Chr3:93429690-93429709 | None:intergenic | 45.0% | |
| CAACTGAGGTGGAATACAGA+AGG | - | Chr3:93430710-93430729 | None:intergenic | 45.0% | |
| CACCATTCTCTTACAGCTTC+TGG | - | Chr3:93429126-93429145 | None:intergenic | 45.0% | |
| CCATGTGTCTATAGCATCCT+CGG | - | Chr3:93431443-93431462 | None:intergenic | 45.0% | |
| CCCACCGAATTAGTAACTTC+CGG | - | Chr3:93430272-93430291 | None:intergenic | 45.0% | |
| CCGGAAGTTACTAATTCGGT+GGG | + | Chr3:93430269-93430288 | MsG0380017217.01.T01:CDS | 45.0% | |
| GAGAGTTGCATTGAAGAAGG+AGG | + | Chr3:93429330-93429349 | MsG0380017217.01.T01:CDS | 45.0% | |
| GCCACCAATAAAGAACATCG+AGG | + | Chr3:93431334-93431353 | MsG0380017217.01.T01:CDS | 45.0% | |
| GGCACTATGTTCATATCAGG+GGG | - | Chr3:93429093-93429112 | None:intergenic | 45.0% | |
| GGTCGTTGTTGGAATGTCAA+AGG | + | Chr3:93430558-93430577 | MsG0380017217.01.T01:CDS | 45.0% | |
| GTCCAGAAGCTGTAAGAGAA+TGG | + | Chr3:93429121-93429140 | MsG0380017217.01.T01:CDS | 45.0% | |
| GTGGAAACCAGTTAAGGTTG+CGG | + | Chr3:93430997-93431016 | MsG0380017217.01.T01:CDS | 45.0% | |
| TCCTCTTGCTACTGATACCT+CGG | - | Chr3:93429787-93429806 | None:intergenic | 45.0% | |
| TGATTTCGGTGGCTACCATA+AGG | + | Chr3:93431275-93431294 | MsG0380017217.01.T01:CDS | 45.0% | |
| TGCGAGAGTTGCATTGAAGA+AGG | + | Chr3:93429327-93429346 | MsG0380017217.01.T01:CDS | 45.0% | |
| TTCTTCAATGCAACTCTCGC+AGG | - | Chr3:93429328-93429347 | None:intergenic | 45.0% | |
| TTTGGGTGTGTAAAGGCAAC+AGG | + | Chr3:93430878-93430897 | MsG0380017217.01.T01:CDS | 45.0% | |
| ! | AGGAATGCGTCGTTTGTTGA+TGG | + | Chr3:93431360-93431379 | MsG0380017217.01.T01:CDS | 45.0% |
| ! | GCAATATAGTTTGCGCGAAC+AGG | + | Chr3:93430951-93430970 | MsG0380017217.01.T01:CDS | 45.0% |
| ! | GGCCATTTAGGTTTCTTCAG+TGG | - | Chr3:93431565-93431584 | None:intergenic | 45.0% |
| ! | GGTTGCTGAGATAGTTTTCG+TGG | + | Chr3:93431312-93431331 | MsG0380017217.01.T01:CDS | 45.0% |
| ! | GTTACTAATTCGGTGGGTAG+TGG | + | Chr3:93430275-93430294 | MsG0380017217.01.T01:CDS | 45.0% |
| ! | TGTTGTTGTCGCTTCTTCCT+CGG | - | Chr3:93429583-93429602 | None:intergenic | 45.0% |
| !! | CATGGTTTTGCATTCATCCG+AGG | + | Chr3:93431423-93431442 | MsG0380017217.01.T01:CDS | 45.0% |
| !! | TCGCTTTGGAGTAGAAAGCA+TGG | + | Chr3:93431405-93431424 | MsG0380017217.01.T01:CDS | 45.0% |
| !! | TGCAGTTGAAGGGTGTTTGA+GGG | - | Chr3:93429361-93429380 | None:intergenic | 45.0% |
| !! | TTACTGGTGCTGCAGTTGAA+GGG | - | Chr3:93429371-93429390 | None:intergenic | 45.0% |
| AAAGCGACCTAGAGAATCCG+AGG | + | Chr3:93429431-93429450 | MsG0380017217.01.T01:CDS | 50.0% | |
| ACAGCTTCTGGACAATGCTC+AGG | - | Chr3:93429114-93429133 | None:intergenic | 50.0% | |
| ACTGCTTCCTCGGATTCTCT+AGG | - | Chr3:93429441-93429460 | None:intergenic | 50.0% | |
| AGAGCGACTGAGAGAATCTG+AGG | + | Chr3:93429701-93429720 | MsG0380017217.01.T01:CDS | 50.0% | |
| ATCGAGTTCCGGATGGTGAT+TGG | + | Chr3:93430741-93430760 | MsG0380017217.01.T01:CDS | 50.0% | |
| CCGAGGATGCTATAGACACA+TGG | + | Chr3:93431440-93431459 | MsG0380017217.01.T01:CDS | 50.0% | |
| GATCTTGATCGAGTTCCGGA+TGG | + | Chr3:93430734-93430753 | MsG0380017217.01.T01:CDS | 50.0% | |
| GCTGGATTTAAGGATCACGC+TGG | + | Chr3:93430488-93430507 | MsG0380017217.01.T01:CDS | 50.0% | |
| GCTTCTTCCTCGGATTCTCT+TGG | - | Chr3:93429573-93429592 | None:intergenic | 50.0% | |
| GGAAGATGGAAGGTCGTTGT+TGG | + | Chr3:93430547-93430566 | MsG0380017217.01.T01:CDS | 50.0% | |
| GGACAGAACCAATCACCATC+CGG | - | Chr3:93430752-93430771 | None:intergenic | 50.0% | |
| GGAGCGACAGAGAAAATCTG+AGG | + | Chr3:93429497-93429516 | MsG0380017217.01.T01:CDS | 50.0% | |
| GGTTGCACTTTCAGCTGGAA+TGG | - | Chr3:93429756-93429775 | None:intergenic | 50.0% | |
| TGAGCAACTGAGAGAATCCG+TGG | + | Chr3:93429632-93429651 | MsG0380017217.01.T01:CDS | 50.0% | |
| TGCTCTAGCTACTGCTTCCT+CGG | - | Chr3:93429451-93429470 | None:intergenic | 50.0% | |
| ! | CGGTGGGTAGTGGTAAAAGA+GGG | + | Chr3:93430285-93430304 | MsG0380017217.01.T01:CDS | 50.0% |
| ! | GGGTAGTGGTAAAAGAGGGA+TGG | + | Chr3:93430289-93430308 | MsG0380017217.01.T01:CDS | 50.0% |
| ! | TCCGAGGTATCAGTAGCAAG+AGG | + | Chr3:93429783-93429802 | MsG0380017217.01.T01:CDS | 50.0% |
| ! | TCGGTGGGTAGTGGTAAAAG+AGG | + | Chr3:93430284-93430303 | MsG0380017217.01.T01:CDS | 50.0% |
| ! | TGCTATTGCTGCTGCTTCCT+CGG | - | Chr3:93430117-93430136 | None:intergenic | 50.0% |
| ! | TGTTGTTGCTGCTGCTTCCA+CGG | - | Chr3:93429652-93429671 | None:intergenic | 50.0% |
| !! | AGAGAATGGTGCCGCTTAAC+AGG | + | Chr3:93429135-93429154 | MsG0380017217.01.T01:CDS | 50.0% |
| !! | ATTGAGCGACTGAGAGCATC+TGG | + | Chr3:93429831-93429850 | MsG0380017217.01.T01:CDS | 50.0% |
| !! | CTGCAGTTGAAGGGTGTTTG+AGG | - | Chr3:93429362-93429381 | None:intergenic | 50.0% |
| !! | GTTACTGGTGCTGCAGTTGA+AGG | - | Chr3:93429372-93429391 | None:intergenic | 50.0% |
| !!! | GGTCGCTTTTTCGACTGTGA+TGG | - | Chr3:93429420-93429439 | None:intergenic | 50.0% |
| AGAGCGACCAAGAGAATCCG+AGG | + | Chr3:93429563-93429582 | MsG0380017217.01.T01:CDS | 55.0% | |
| AGAGCGACTGAGAGAATGCG+AGG | + | Chr3:93429965-93429984 | MsG0380017217.01.T01:CDS | 55.0% | |
| AGTGCAACCGAAGGAATCCG+AGG | + | Chr3:93429767-93429786 | MsG0380017217.01.T01:CDS | 55.0% | |
| CCTTCGGTTGCACTTTCAGC+TGG | - | Chr3:93429761-93429780 | None:intergenic | 55.0% | |
| GCTGCTTCCTCGGATTCACT+TGG | - | Chr3:93430107-93430126 | None:intergenic | 55.0% | |
| GGGACTAATGTGCTCTGTCG+TGG | + | Chr3:93430386-93430405 | MsG0380017217.01.T01:CDS | 55.0% | |
| ! | CCAGCTGAAAGTGCAACCGA+AGG | + | Chr3:93429758-93429777 | MsG0380017217.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 93429072 | 93431621 | 93429072 | ID=MsG0380017217.01;Name=MsG0380017217.01 |
| Chr3 | mRNA | 93429072 | 93431621 | 93429072 | ID=MsG0380017217.01.T01;Parent=MsG0380017217.01;Name=MsG0380017217.01.T01;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|849 |
| Chr3 | exon | 93429072 | 93431621 | 93429072 | ID=MsG0380017217.01.T01:exon:25342;Parent=MsG0380017217.01.T01 |
| Chr3 | CDS | 93429072 | 93431621 | 93429072 | ID=MsG0380017217.01.T01:cds;Parent=MsG0380017217.01.T01 |
| Gene Sequence |
| Protein sequence |
