AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017218.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017218.01.T01 MTR_3g103160 68.136 295 36 4 36 293 13 286 1.01e-100 305
MsG0380017218.01.T01 MTR_5g024390 56.667 240 85 6 101 329 10 241 2.41e-82 257
MsG0380017218.01.T01 MTR_5g024500 56.303 238 85 6 103 329 12 241 1.03e-80 253
MsG0380017218.01.T01 MTR_7g109640 56.277 231 77 4 103 329 393 603 1.65e-80 261
MsG0380017218.01.T01 MTR_3g103110 46.296 324 111 8 52 329 309 615 2.68e-77 253
MsG0380017218.01.T01 MTR_3g103120 47.674 344 110 8 37 329 324 648 3.71e-75 248
MsG0380017218.01.T01 MTR_3g464550 40.870 230 112 8 104 329 613 822 8.35e-42 156
MsG0380017218.01.T01 MTR_5g071340 34.386 285 137 9 70 329 639 898 3.22e-39 148
MsG0380017218.01.T01 MTR_2g078040 34.685 222 116 6 109 324 778 976 3.16e-31 125
MsG0380017218.01.T01 MTR_1g103830 33.913 230 125 4 102 324 614 823 8.03e-30 121
MsG0380017218.01.T01 MTR_1g072130 35.685 241 122 11 103 333 822 1039 3.29e-28 116
MsG0380017218.01.T01 MTR_1g068930 29.204 226 98 8 128 321 496 691 1.28e-21 96.7
MsG0380017218.01.T01 MTR_1g068930 29.204 226 98 8 128 321 459 654 1.58e-21 96.7
MsG0380017218.01.T01 MTR_2g084425 27.372 274 112 8 103 323 470 709 1.39e-16 81.6
MsG0380017218.01.T01 MTR_2g084425 27.273 275 113 8 103 324 470 710 1.40e-16 81.6
MsG0380017218.01.T01 MTR_7g102610 25.100 251 112 7 119 323 526 746 3.95e-16 80.1
MsG0380017218.01.T01 MTR_6g061000 45.000 80 41 1 181 260 23 99 1.51e-14 69.3
MsG0380017218.01.T01 MTR_7g095140 34.426 122 61 4 207 323 13 120 1.29e-12 68.6
MsG0380017218.01.T01 MTR_4g050090 23.723 274 131 8 100 325 196 439 1.43e-12 69.3
MsG0380017218.01.T01 MTR_4g056990 24.014 279 129 9 95 325 196 439 9.18e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 573 826 6.39e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 573 826 7.24e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 342 595 7.95e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 564 817 7.96e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 573 826 8.11e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 573 826 8.11e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 564 817 9.15e-42 156
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 564 817 1.02e-41 155
MsG0380017218.01.T01 AT5G58610 36.861 274 139 7 74 333 564 817 1.10e-41 155
MsG0380017218.01.T01 AT5G58610 36.364 253 127 7 74 312 564 796 8.03e-36 139
MsG0380017218.01.T01 AT5G58610 36.364 253 127 7 74 312 564 796 8.99e-36 138
MsG0380017218.01.T01 AT5G36740 34.052 232 126 6 102 324 547 760 7.21e-31 124
MsG0380017218.01.T01 AT5G36740 34.052 232 126 6 102 324 547 760 7.21e-31 124
MsG0380017218.01.T01 AT5G36670 34.052 232 126 6 102 324 547 760 8.34e-31 124
MsG0380017218.01.T01 AT5G36670 34.052 232 126 6 102 324 547 760 8.34e-31 124
MsG0380017218.01.T01 AT5G36740 34.052 232 126 6 102 324 547 760 1.02e-30 124
MsG0380017218.01.T01 AT5G36740 34.052 232 126 6 102 324 547 760 1.02e-30 124
MsG0380017218.01.T01 AT5G36670 34.052 232 126 6 102 324 547 760 1.02e-30 124
MsG0380017218.01.T01 AT5G36740 32.231 242 127 7 102 324 394 617 9.93e-27 112
MsG0380017218.01.T01 AT1G05380 33.750 240 127 8 104 332 524 742 1.14e-26 112
MsG0380017218.01.T01 AT1G05380 33.750 240 127 8 104 332 524 742 1.14e-26 112
MsG0380017218.01.T01 AT1G05380 33.750 240 127 8 104 332 524 742 1.14e-26 112
MsG0380017218.01.T01 AT5G36670 32.231 242 127 7 102 324 394 617 1.21e-26 112
MsG0380017218.01.T01 AT5G36670 32.231 242 127 7 102 324 547 770 1.24e-26 112
MsG0380017218.01.T01 AT4G14920 29.688 320 169 14 37 332 513 800 2.61e-25 107
MsG0380017218.01.T01 AT4G14920 29.688 320 169 14 37 332 513 800 2.89e-25 107
MsG0380017218.01.T01 AT4G14920 29.688 320 169 14 37 332 513 800 2.89e-25 107
MsG0380017218.01.T01 AT3G14980 29.665 209 127 6 116 324 645 833 1.22e-21 97.1
MsG0380017218.01.T01 AT3G14980 29.665 209 127 6 116 324 645 833 1.22e-21 97.1
MsG0380017218.01.T01 AT3G14980 29.665 209 127 6 116 324 645 833 1.22e-21 97.1
MsG0380017218.01.T01 AT3G14980 29.665 209 127 6 116 324 600 788 1.23e-21 97.1
MsG0380017218.01.T01 AT3G14980 29.665 209 127 6 116 324 645 833 1.63e-21 96.7
MsG0380017218.01.T01 AT3G14980 29.665 209 127 6 116 324 645 833 1.65e-21 96.7
MsG0380017218.01.T01 AT2G37520 28.235 255 120 8 104 321 386 614 4.07e-20 92.4
MsG0380017218.01.T01 AT5G63900 35.766 137 76 3 207 343 255 379 1.04e-17 84.7
MsG0380017218.01.T01 AT2G27980 26.149 348 165 13 49 340 554 865 4.84e-17 83.2

Find 70 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTTCTGTTTGTTGTTT+TGG 0.157762 3:+93458620 MsG0380017218.01.T01:CDS
TCCTCAACCTCAACCTTAAT+TGG 0.184695 3:-93458968 None:intergenic
GTCTTCCAAGAAGATACTTT+TGG 0.271492 3:-93458456 None:intergenic
AATGGGGCTTGGGCTTGATC+AGG 0.284853 3:+93456733 MsG0380017218.01.T01:CDS
CTTAAGTCTGGAGAATCTAT+TGG 0.291332 3:+93458940 MsG0380017218.01.T01:CDS
ACCATCCAAAAGTATCTTCT+TGG 0.296021 3:+93458451 MsG0380017218.01.T01:CDS
GTTGATAAAGGATGGAGTTT+TGG 0.297915 3:+93458283 MsG0380017218.01.T01:intron
TCTATTGGGGAAACCAATTA+AGG 0.301369 3:+93458955 MsG0380017218.01.T01:CDS
ACAAGCATGAGCCTCAAATT+TGG 0.327395 3:-93458414 None:intergenic
TTTGAATCAGCAAATTTATT+AGG 0.331447 3:+93459031 MsG0380017218.01.T01:CDS
TGGGAACATGTTCTTAAGTC+TGG 0.333866 3:+93458928 MsG0380017218.01.T01:CDS
TTAAGTCTGGAGAATCTATT+GGG 0.345047 3:+93458941 MsG0380017218.01.T01:CDS
TTGTAATGCTGAAGCAAAAT+TGG 0.360691 3:+93458547 MsG0380017218.01.T01:CDS
TCTGTTTCCTCAGATTCTCT+TGG 0.364254 3:-93458076 None:intergenic
CGGACCATCCGGATCTCGTT+TGG 0.365460 3:-93458702 None:intergenic
CGGAGCTTCATTGTTGGACT+TGG 0.367598 3:+93458478 MsG0380017218.01.T01:CDS
CTGTTTCCTCAGATTCTCTT+GGG 0.378621 3:-93458075 None:intergenic
GAAACAGATAAATCAACTTC+TGG 0.384834 3:+93458091 MsG0380017218.01.T01:CDS
AGCAAGGTTCAAATGGGGCT+TGG 0.390590 3:+93456722 MsG0380017218.01.T01:CDS
ACCAATTAAGGTTGAGGTTG+AGG 0.397715 3:+93458967 MsG0380017218.01.T01:CDS
TGTTGTTGTTGTTCCTTCCT+CGG 0.407699 3:-93458020 None:intergenic
GTCTAGAGCAAGGTTCAAAT+GGG 0.417927 3:+93456716 MsG0380017218.01.T01:CDS
ATTCACTCTCACCAAATTTG+AGG 0.418669 3:+93458403 MsG0380017218.01.T01:CDS
GAGGGGCTATCAAGAATAGT+TGG 0.419790 3:+93456675 MsG0380017218.01.T01:CDS
GCATTATTATAAAGAAGAAT+TGG 0.423091 3:+93458888 MsG0380017218.01.T01:CDS
TGTCTAGAGCAAGGTTCAAA+TGG 0.441310 3:+93456715 MsG0380017218.01.T01:CDS
GGACCATCCGGATCTCGTTT+GGG 0.443423 3:-93458701 None:intergenic
GCAAGGTTCAAATGGGGCTT+GGG 0.444060 3:+93456723 MsG0380017218.01.T01:CDS
TCGTTCCACTCTGATTGTCT+AGG 0.448808 3:+93458677 MsG0380017218.01.T01:CDS
AGTTGGGTACAAGTGGAGAT+TGG 0.457185 3:+93456692 MsG0380017218.01.T01:CDS
CACGTACCATCCGGACCATC+CGG 0.457618 3:-93458713 None:intergenic
TCTGAGCTCAGCCAATCAAA+AGG 0.457877 3:+93458517 MsG0380017218.01.T01:CDS
GGGGAAACCAATTAAGGTTG+AGG 0.468263 3:+93458961 MsG0380017218.01.T01:CDS
CTGAGCTCAGCCAATCAAAA+GGG 0.474959 3:+93458518 MsG0380017218.01.T01:CDS
AATCATTGGTTGAAACTTGA+GGG 0.478864 3:+93456657 MsG0380017218.01.T01:CDS
TCTAGGTCCCAAACGAGATC+CGG 0.480604 3:+93458694 MsG0380017218.01.T01:CDS
GGCTAATGGAGAAGAATCAT+TGG 0.482342 3:+93456643 None:intergenic
GGAAGACGGAGCTTCATTGT+TGG 0.491076 3:+93458472 MsG0380017218.01.T01:CDS
ATGGGGCTTGGGCTTGATCA+GGG 0.493209 3:+93456734 MsG0380017218.01.T01:CDS
CAAACGAGATCCGGATGGTC+CGG 0.494710 3:+93458703 MsG0380017218.01.T01:CDS
TTCTTCAATAGATTATTCTC+AGG 0.497090 3:-93458995 None:intergenic
AGCTCAGAGCTTTCATTCGA+CGG 0.500191 3:-93458502 None:intergenic
AAGGATAATGTAATCAAAAG+AGG 0.510605 3:+93458335 MsG0380017218.01.T01:CDS
AGATAAATCAACTTCTGGTA+AGG 0.519619 3:+93458096 MsG0380017218.01.T01:CDS
AGGGGCTATCAAGAATAGTT+GGG 0.522747 3:+93456676 MsG0380017218.01.T01:CDS
GAATCATTGGTTGAAACTTG+AGG 0.523093 3:+93456656 MsG0380017218.01.T01:CDS
AAGGCAACAGAAACTGCATC+TGG 0.536387 3:+93458863 MsG0380017218.01.T01:CDS
CAAGAATAGTTGGGTACAAG+TGG 0.545137 3:+93456685 MsG0380017218.01.T01:CDS
CAATCAGAGTGGAACGAAGA+AGG 0.551856 3:-93458671 None:intergenic
CGAGATCCGGATGGTCCGGA+TGG 0.554057 3:+93458707 MsG0380017218.01.T01:CDS
AGGATAATGTAATCAAAAGA+GGG 0.558651 3:+93458336 MsG0380017218.01.T01:CDS
GGACATAACCACGTACCATC+CGG 0.559670 3:-93458722 None:intergenic
TTTAACAGAACTGAAACTAG+AGG 0.568183 3:-93458128 None:intergenic
GGTATCAAGATCAACTTCAA+AGG 0.574162 3:+93458168 MsG0380017218.01.T01:CDS
CATATTCTGCAGCAGCAACT+CGG 0.583193 3:-93458743 None:intergenic
AAAAGTATCTTCTTGGAAGA+CGG 0.583790 3:+93458458 MsG0380017218.01.T01:CDS
AGATCTCCCAAGAGAATCTG+AGG 0.584662 3:+93458069 MsG0380017218.01.T01:CDS
CGACAGAGAGAATCCGAGGA+AGG 0.596626 3:+93458007 MsG0380017218.01.T01:intron
AAAGCGACAGAGAGAATCCG+AGG 0.599141 3:+93458003 MsG0380017218.01.T01:intron
CGGATGGTCCGGATGGTACG+TGG 0.618538 3:+93458714 MsG0380017218.01.T01:CDS
AGAGGGAGTATATCTTGTGA+AGG 0.627803 3:+93458353 MsG0380017218.01.T01:CDS
TGAGCTCAGCCAATCAAAAG+GGG 0.629047 3:+93458519 MsG0380017218.01.T01:CDS
GGCGACTTAATATTATGTGA+TGG 0.631811 3:+93458644 MsG0380017218.01.T01:CDS
ATCATTGGTTGAAACTTGAG+GGG 0.635097 3:+93456658 MsG0380017218.01.T01:CDS
GGAGATTGGTGTCTAGAGCA+AGG 0.636440 3:+93456706 MsG0380017218.01.T01:CDS
TGATTACATTATCCTTACCA+CGG 0.660633 3:-93458328 None:intergenic
GGTCCCAAACGAGATCCGGA+TGG 0.671675 3:+93458698 MsG0380017218.01.T01:CDS
TAAGTCTGGAGAATCTATTG+GGG 0.696643 3:+93458942 MsG0380017218.01.T01:CDS
TCTAGAGCAAGGTTCAAATG+GGG 0.711387 3:+93456717 MsG0380017218.01.T01:CDS
TGGGACCTAGACAATCAGAG+TGG 0.755629 3:-93458682 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAACAAAAAATTAAT+AGG + Chr3:93457899-93457918 MsG0380017218.01.T01:intron 10.0%
!! AATAATATATTAAACCAAAT+AGG - Chr3:93457659-93457678 None:intergenic 10.0%
!! AATTCAGATAAAAAATAATA+GGG + Chr3:93457732-93457751 MsG0380017218.01.T01:intron 10.0%
!! ATAATATATTAAACCAAATA+GGG - Chr3:93457658-93457677 None:intergenic 10.0%
!! CAAATTTGTAAAACTATATT+CGG + Chr3:93457773-93457792 MsG0380017218.01.T01:intron 15.0%
!! GAATTCAGATAAAAAATAAT+AGG + Chr3:93457731-93457750 MsG0380017218.01.T01:intron 15.0%
!! TAATATATTAAACCAAATAG+GGG - Chr3:93457657-93457676 None:intergenic 15.0%
!! TGGTTTAATATATTATTGTT+TGG + Chr3:93457662-93457681 MsG0380017218.01.T01:intron 15.0%
!!! ATTTTTTGTTTTGTTTTTGT+AGG - Chr3:93457895-93457914 None:intergenic 15.0%
!! AATATATTAAACCAAATAGG+GGG - Chr3:93457656-93457675 None:intergenic 20.0%
!! GCATTATTATAAAGAAGAAT+TGG + Chr3:93458888-93458907 MsG0380017218.01.T01:CDS 20.0%
!! TATCATATTAGTATATGACA+TGG + Chr3:93457923-93457942 MsG0380017218.01.T01:intron 20.0%
!! TTTGAATCAGCAAATTTATT+AGG + Chr3:93459031-93459050 MsG0380017218.01.T01:CDS 20.0%
!! TTTGATTCAAATGAATAATG+AGG - Chr3:93457013-93457032 None:intergenic 20.0%
!!! AACAATTTGGGATAATTTTT+TGG + Chr3:93457234-93457253 MsG0380017218.01.T01:intron 20.0%
!!! ATTAGAATTTTCTAATTCAG+TGG + Chr3:93458219-93458238 MsG0380017218.01.T01:intron 20.0%
!!! GCTGATTCAAAAAAAAAAAT+TGG - Chr3:93459022-93459041 None:intergenic 20.0%
!!! GTGAACAAAAATATCATTTT+GGG + Chr3:93458834-93458853 MsG0380017218.01.T01:CDS 20.0%
!!! TGTGAACAAAAATATCATTT+TGG + Chr3:93458833-93458852 MsG0380017218.01.T01:CDS 20.0%
!!! TTAGAATTTTCTAATTCAGT+GGG + Chr3:93458220-93458239 MsG0380017218.01.T01:intron 20.0%
!!! TTTCTTGAGATTTTTGTTAA+GGG + Chr3:93457171-93457190 MsG0380017218.01.T01:intron 20.0%
!!! TTTTCTTGAGATTTTTGTTA+AGG + Chr3:93457170-93457189 MsG0380017218.01.T01:intron 20.0%
! AAGGATAATGTAATCAAAAG+AGG + Chr3:93458335-93458354 MsG0380017218.01.T01:CDS 25.0%
! AATTCGAATTATGGTAAAGT+GGG + Chr3:93456937-93456956 MsG0380017218.01.T01:intron 25.0%
! AGGATAATGTAATCAAAAGA+GGG + Chr3:93458336-93458355 MsG0380017218.01.T01:CDS 25.0%
! TAAAAAAGCTACACTAACTA+TGG + Chr3:93458147-93458166 MsG0380017218.01.T01:CDS 25.0%
! TAATTCGAATTATGGTAAAG+TGG + Chr3:93456936-93456955 MsG0380017218.01.T01:intron 25.0%
! TCAAAACGAATAAACAATCT+TGG + Chr3:93457425-93457444 MsG0380017218.01.T01:intron 25.0%
! TTCTTCAATAGATTATTCTC+AGG - Chr3:93458998-93459017 None:intergenic 25.0%
! TTGCAAAGACTCATTAATAA+TGG + Chr3:93457362-93457381 MsG0380017218.01.T01:intron 25.0%
! TTGTATTTGGATTGATTGTT+TGG + Chr3:93457480-93457499 MsG0380017218.01.T01:intron 25.0%
!! AAAGACTCATTAATAATGGA+TGG + Chr3:93457366-93457385 MsG0380017218.01.T01:intron 25.0%
!! CTCTTTATCTTGTTTGTATT+TGG + Chr3:93457467-93457486 MsG0380017218.01.T01:intron 25.0%
!! TTAATTTCTTGTAGCTCTTT+TGG + Chr3:93457333-93457352 MsG0380017218.01.T01:intron 25.0%
!! TTCGATCATGAATTTTATGT+TGG + Chr3:93456910-93456929 MsG0380017218.01.T01:intron 25.0%
!! TTCTTGAGATTTTTGTTAAG+GGG + Chr3:93457172-93457191 MsG0380017218.01.T01:intron 25.0%
!!! AAGACTCATTAATAATGGAT+GGG + Chr3:93457367-93457386 MsG0380017218.01.T01:intron 25.0%
AAAAGTGGAACAAATAGCAA+TGG - Chr3:93457705-93457724 None:intergenic 30.0%
AAACACATTCAAAACACCTT+CGG + Chr3:93457100-93457119 MsG0380017218.01.T01:intron 30.0%
ACAATTAGAAATGACTTCAC+GGG - Chr3:93457979-93457998 None:intergenic 30.0%
AGAGGAAAAGAAAGAAATCA+GGG + Chr3:93457198-93457217 MsG0380017218.01.T01:intron 30.0%
AGATAAATCAACTTCTGGTA+AGG + Chr3:93458096-93458115 MsG0380017218.01.T01:CDS 30.0%
AGATCAATAAGGTGATTGAA+GGG + Chr3:93456818-93456837 MsG0380017218.01.T01:intron 30.0%
ATTGTTTGGACTATTTAGCT+TGG + Chr3:93457676-93457695 MsG0380017218.01.T01:intron 30.0%
ATTTCTCTTGGTGAACAATT+TGG + Chr3:93457221-93457240 MsG0380017218.01.T01:intron 30.0%
ATTTGTATAATGCATTCTCG+AGG - Chr3:93457758-93457777 None:intergenic 30.0%
GAAACAGATAAATCAACTTC+TGG + Chr3:93458091-93458110 MsG0380017218.01.T01:CDS 30.0%
GACAATTAGAAATGACTTCA+CGG - Chr3:93457980-93457999 None:intergenic 30.0%
TCTCATTTGTAGGTCAATTT+GGG + Chr3:93457402-93457421 MsG0380017218.01.T01:intron 30.0%
TGATTACATTATCCTTACCA+CGG - Chr3:93458331-93458350 None:intergenic 30.0%
TTAAGTCTGGAGAATCTATT+GGG + Chr3:93458941-93458960 MsG0380017218.01.T01:CDS 30.0%
TTGATCAAGCTACATATAGA+TGG - Chr3:93457854-93457873 None:intergenic 30.0%
TTGTAATGCTGAAGCAAAAT+TGG + Chr3:93458547-93458566 MsG0380017218.01.T01:CDS 30.0%
TTTAACAGAACTGAAACTAG+AGG - Chr3:93458131-93458150 None:intergenic 30.0%
TTTCTCTTGGTGAACAATTT+GGG + Chr3:93457222-93457241 MsG0380017218.01.T01:intron 30.0%
! AATCATTGGTTGAAACTTGA+GGG + Chr3:93456657-93456676 MsG0380017218.01.T01:CDS 30.0%
!! AAAAGTATCTTCTTGGAAGA+CGG + Chr3:93458458-93458477 MsG0380017218.01.T01:CDS 30.0%
!! AAACTTTTTGAGAAACCTAG+AGG + Chr3:93457038-93457057 MsG0380017218.01.T01:intron 30.0%
!! AAAGTGTTCTCAGTTGATAA+AGG + Chr3:93458271-93458290 MsG0380017218.01.T01:intron 30.0%
!! AGTTGTTTTCTCTCATTTGT+AGG + Chr3:93457392-93457411 MsG0380017218.01.T01:intron 30.0%
!! GTAAAAAAGGGAAAGTACTA+AGG + Chr3:93458248-93458267 MsG0380017218.01.T01:intron 30.0%
!!! ACATGTTCTGTTTGTTGTTT+TGG + Chr3:93458620-93458639 MsG0380017218.01.T01:CDS 30.0%
!!! ATGTTCTGTTTGTTGTTTTG+GGG + Chr3:93458622-93458641 MsG0380017218.01.T01:CDS 30.0%
!!! CATGTTCTGTTTGTTGTTTT+GGG + Chr3:93458621-93458640 MsG0380017218.01.T01:CDS 30.0%
AAGAAATCAGGGATTTCTCT+TGG + Chr3:93457209-93457228 MsG0380017218.01.T01:intron 35.0%
ATTCACTCTCACCAAATTTG+AGG + Chr3:93458403-93458422 MsG0380017218.01.T01:CDS 35.0%
CAATTAGAAATGACTTCACG+GGG - Chr3:93457978-93457997 None:intergenic 35.0%
CTCTCATTTGTAGGTCAATT+TGG + Chr3:93457401-93457420 MsG0380017218.01.T01:intron 35.0%
CTTAAGTCTGGAGAATCTAT+TGG + Chr3:93458940-93458959 MsG0380017218.01.T01:CDS 35.0%
GAGAGGAAAAGAAAGAAATC+AGG + Chr3:93457197-93457216 MsG0380017218.01.T01:intron 35.0%
GAGATCAATAAGGTGATTGA+AGG + Chr3:93456817-93456836 MsG0380017218.01.T01:intron 35.0%
GGCGACTTAATATTATGTGA+TGG + Chr3:93458644-93458663 MsG0380017218.01.T01:CDS 35.0%
GGTATCAAGATCAACTTCAA+AGG + Chr3:93458168-93458187 MsG0380017218.01.T01:CDS 35.0%
TAAGTCTGGAGAATCTATTG+GGG + Chr3:93458942-93458961 MsG0380017218.01.T01:CDS 35.0%
TAAGTGAAGGGTTAAAGAGT+TGG - Chr3:93457614-93457633 None:intergenic 35.0%
TCTATTGGGGAAACCAATTA+AGG + Chr3:93458955-93458974 MsG0380017218.01.T01:CDS 35.0%
TCTGAATTCAACGAGAAAAG+TGG - Chr3:93457720-93457739 None:intergenic 35.0%
TTAGTAACTCTCTTGTGAGA+GGG + Chr3:93457262-93457281 MsG0380017218.01.T01:intron 35.0%
TTTAGTAACTCTCTTGTGAG+AGG + Chr3:93457261-93457280 MsG0380017218.01.T01:intron 35.0%
TTTGAATGTGTTTGTAACCC+TGG - Chr3:93457093-93457112 None:intergenic 35.0%
! AAGTGACATCATCGATGTTT+TGG + Chr3:93456843-93456862 MsG0380017218.01.T01:intron 35.0%
! ACAATCATTCCCCTTTTGAT+TGG - Chr3:93458531-93458550 None:intergenic 35.0%
! ATCATTGGTTGAAACTTGAG+GGG + Chr3:93456658-93456677 MsG0380017218.01.T01:CDS 35.0%
! ATTTTTGTTAAGGGGTTGAG+AGG + Chr3:93457180-93457199 MsG0380017218.01.T01:intron 35.0%
! GAATCATTGGTTGAAACTTG+AGG + Chr3:93456656-93456675 MsG0380017218.01.T01:CDS 35.0%
! GGTTTTGCAGTAAAGTTTGT+GGG + Chr3:93458909-93458928 MsG0380017218.01.T01:CDS 35.0%
! GTCTTCCAAGAAGATACTTT+TGG - Chr3:93458459-93458478 None:intergenic 35.0%
! TCCAAGAAGATACTTTTGGA+TGG - Chr3:93458455-93458474 None:intergenic 35.0%
! TTTTCTAATTCAGTGGGTAG+TGG + Chr3:93458226-93458245 MsG0380017218.01.T01:intron 35.0%
!! ACCATCCAAAAGTATCTTCT+TGG + Chr3:93458451-93458470 MsG0380017218.01.T01:CDS 35.0%
!! ATATCATTTTGGGTGCGTAA+AGG + Chr3:93458844-93458863 MsG0380017218.01.T01:CDS 35.0%
!! GTTGATAAAGGATGGAGTTT+TGG + Chr3:93458283-93458302 MsG0380017218.01.T01:intron 35.0%
!! GTTGGTGCTAATTCGAATTA+TGG + Chr3:93456928-93456947 MsG0380017218.01.T01:intron 35.0%
!! TGGTTTTGCAGTAAAGTTTG+TGG + Chr3:93458908-93458927 MsG0380017218.01.T01:CDS 35.0%
!! TGTTCTCAGTTGATAAAGGA+TGG + Chr3:93458275-93458294 MsG0380017218.01.T01:intron 35.0%
!!! TGTTCTGTTTGTTGTTTTGG+GGG + Chr3:93458623-93458642 MsG0380017218.01.T01:CDS 35.0%
ACAAGCATGAGCCTCAAATT+TGG - Chr3:93458417-93458436 None:intergenic 40.0%
ACCAATTAAGGTTGAGGTTG+AGG + Chr3:93458967-93458986 MsG0380017218.01.T01:CDS 40.0%
AGGGGCTATCAAGAATAGTT+GGG + Chr3:93456676-93456695 MsG0380017218.01.T01:CDS 40.0%
CAAAACACCTTCGGTAGTAA+GGG + Chr3:93457109-93457128 MsG0380017218.01.T01:intron 40.0%
CAAGAATAGTTGGGTACAAG+TGG + Chr3:93456685-93456704 MsG0380017218.01.T01:CDS 40.0%
CTGTTTCCTCAGATTCTCTT+GGG - Chr3:93458078-93458097 None:intergenic 40.0%
GAGAGAGAGAGAGATCAATA+AGG + Chr3:93456807-93456826 MsG0380017218.01.T01:intron 40.0%
TCAAAACACCTTCGGTAGTA+AGG + Chr3:93457108-93457127 MsG0380017218.01.T01:intron 40.0%
TCCTCAACCTCAACCTTAAT+TGG - Chr3:93458971-93458990 None:intergenic 40.0%
TCTGTTTCCTCAGATTCTCT+TGG - Chr3:93458079-93458098 None:intergenic 40.0%
TGGGAACATGTTCTTAAGTC+TGG + Chr3:93458928-93458947 MsG0380017218.01.T01:CDS 40.0%
TTGAGAAACCTAGAGGCTAA+GGG + Chr3:93457045-93457064 MsG0380017218.01.T01:intron 40.0%
TTTGAGAAACCTAGAGGCTA+AGG + Chr3:93457044-93457063 MsG0380017218.01.T01:intron 40.0%
! AGAGGGAGTATATCTTGTGA+AGG + Chr3:93458353-93458372 MsG0380017218.01.T01:CDS 40.0%
! AGTAAGGGTTTCTCTTTTGG+AGG + Chr3:93457124-93457143 MsG0380017218.01.T01:intron 40.0%
! CAGTGGGTAGTGGTAAAAAA+GGG + Chr3:93458236-93458255 MsG0380017218.01.T01:intron 40.0%
! GGTAGTAAGGGTTTCTCTTT+TGG + Chr3:93457121-93457140 MsG0380017218.01.T01:intron 40.0%
! GTCTAGAGCAAGGTTCAAAT+GGG + Chr3:93456716-93456735 MsG0380017218.01.T01:CDS 40.0%
! TATTGTTTTCTGCCGTGGTA+AGG + Chr3:93458316-93458335 MsG0380017218.01.T01:CDS 40.0%
! TCAGTGGGTAGTGGTAAAAA+AGG + Chr3:93458235-93458254 MsG0380017218.01.T01:intron 40.0%
! TCTAGAGCAAGGTTCAAATG+GGG + Chr3:93456717-93456736 MsG0380017218.01.T01:CDS 40.0%
! TGTCTAGAGCAAGGTTCAAA+TGG + Chr3:93456715-93456734 MsG0380017218.01.T01:CDS 40.0%
! TGTTGTTGTTGTTCCTTCCT+CGG - Chr3:93458023-93458042 None:intergenic 40.0%
!! GGGAGATCTTTTGACTGTAA+TGG - Chr3:93458058-93458077 None:intergenic 40.0%
!!! AAGGATGGAGTTTTGGTTTC+TGG + Chr3:93458290-93458309 MsG0380017218.01.T01:intron 40.0%
!!! AGGATGGAGTTTTGGTTTCT+GGG + Chr3:93458291-93458310 MsG0380017218.01.T01:intron 40.0%
!!! ATCGATGTTTTGGAGTCAAG+GGG + Chr3:93456853-93456872 MsG0380017218.01.T01:intron 40.0%
!!! CATCGATGTTTTGGAGTCAA+GGG + Chr3:93456852-93456871 MsG0380017218.01.T01:intron 40.0%
!!! CTTTTTTGCATGTGCGTTGA+CGG - Chr3:93458769-93458788 None:intergenic 40.0%
!!! TCATCGATGTTTTGGAGTCA+AGG + Chr3:93456851-93456870 MsG0380017218.01.T01:intron 40.0%
AACCTAGAGGCTAAGGGTTA+CGG + Chr3:93457051-93457070 MsG0380017218.01.T01:intron 45.0%
AACTCTCTTGTGAGAGGGAA+AGG + Chr3:93457267-93457286 MsG0380017218.01.T01:intron 45.0%
AAGGCAACAGAAACTGCATC+TGG + Chr3:93458863-93458882 MsG0380017218.01.T01:CDS 45.0%
AAGGGGAACGGTAGAAAGTA+AGG + Chr3:93457286-93457305 MsG0380017218.01.T01:intron 45.0%
ACTCTCTTGTGAGAGGGAAA+GGG + Chr3:93457268-93457287 MsG0380017218.01.T01:intron 45.0%
AGAGAAACCCTTACTACCGA+AGG - Chr3:93457119-93457138 None:intergenic 45.0%
AGATCTCCCAAGAGAATCTG+AGG + Chr3:93458069-93458088 MsG0380017218.01.T01:CDS 45.0%
AGCTCAAGTGGTCTAAGTGA+AGG - Chr3:93457627-93457646 None:intergenic 45.0%
AGCTCAGAGCTTTCATTCGA+CGG - Chr3:93458505-93458524 None:intergenic 45.0%
AGTTGGGTACAAGTGGAGAT+TGG + Chr3:93456692-93456711 MsG0380017218.01.T01:CDS 45.0%
CAATCAGAGTGGAACGAAGA+AGG - Chr3:93458674-93458693 None:intergenic 45.0%
CATATTCTGCAGCAGCAACT+CGG - Chr3:93458746-93458765 None:intergenic 45.0%
CTGAGCTCAGCCAATCAAAA+GGG + Chr3:93458518-93458537 MsG0380017218.01.T01:CDS 45.0%
GAGGGGCTATCAAGAATAGT+TGG + Chr3:93456675-93456694 MsG0380017218.01.T01:CDS 45.0%
GCAATTGTGTCAGGTGACTA+AGG - Chr3:93457819-93457838 None:intergenic 45.0%
GCTCAAGTGGTCTAAGTGAA+GGG - Chr3:93457626-93457645 None:intergenic 45.0%
GGGGAAACCAATTAAGGTTG+AGG + Chr3:93458961-93458980 MsG0380017218.01.T01:CDS 45.0%
GGTTAAAGAGTTGGAGGTTC+AGG - Chr3:93457605-93457624 None:intergenic 45.0%
GTGAAGGGTTAAAGAGTTGG+AGG - Chr3:93457611-93457630 None:intergenic 45.0%
TCGTTCCACTCTGATTGTCT+AGG + Chr3:93458677-93458696 MsG0380017218.01.T01:CDS 45.0%
TCTGAGCTCAGCCAATCAAA+AGG + Chr3:93458517-93458536 MsG0380017218.01.T01:CDS 45.0%
TGAGCTCAGCCAATCAAAAG+GGG + Chr3:93458519-93458538 MsG0380017218.01.T01:CDS 45.0%
TTGCAGTGAGCAATTGTGTC+AGG - Chr3:93457828-93457847 None:intergenic 45.0%
!! AGGGTTTCTCTTTTGGAGGA+AGG + Chr3:93457128-93457147 MsG0380017218.01.T01:intron 45.0%
!!! TCGATGTTTTGGAGTCAAGG+GGG + Chr3:93456854-93456873 MsG0380017218.01.T01:intron 45.0%
AAAGCGACAGAGAGAATCCG+AGG + Chr3:93458003-93458022 MsG0380017218.01.T01:intron 50.0%
AAGGGTTACGGGACTTTGGT+TGG + Chr3:93457063-93457082 MsG0380017218.01.T01:intron 50.0%
ACCTAGAGGCTAAGGGTTAC+GGG + Chr3:93457052-93457071 MsG0380017218.01.T01:intron 50.0%
AGCAAGGTTCAAATGGGGCT+TGG + Chr3:93456722-93456741 MsG0380017218.01.T01:CDS 50.0%
AGGGTTACGGGACTTTGGTT+GGG + Chr3:93457064-93457083 MsG0380017218.01.T01:intron 50.0%
CGGAGCTTCATTGTTGGACT+TGG + Chr3:93458478-93458497 MsG0380017218.01.T01:CDS 50.0%
CTCTCTTGTGAGAGGGAAAG+GGG + Chr3:93457269-93457288 MsG0380017218.01.T01:intron 50.0%
GAGCTACTCAACCCCCTATT+TGG + Chr3:93457642-93457661 MsG0380017218.01.T01:intron 50.0%
GCAAGGTTCAAATGGGGCTT+GGG + Chr3:93456723-93456742 MsG0380017218.01.T01:CDS 50.0%
GGAAGACGGAGCTTCATTGT+TGG + Chr3:93458472-93458491 MsG0380017218.01.T01:CDS 50.0%
GGACATAACCACGTACCATC+CGG - Chr3:93458725-93458744 None:intergenic 50.0%
GGACTTTGGTTGGGTAACCA+GGG + Chr3:93457073-93457092 MsG0380017218.01.T01:intron 50.0%
TCTAGGTCCCAAACGAGATC+CGG + Chr3:93458694-93458713 MsG0380017218.01.T01:CDS 50.0%
TGGGACCTAGACAATCAGAG+TGG - Chr3:93458685-93458704 None:intergenic 50.0%
TTGTGAGAGGGAAAGGGGAA+CGG + Chr3:93457274-93457293 MsG0380017218.01.T01:intron 50.0%
! GACTAAGGAGTGTGCACTCT+TGG - Chr3:93457804-93457823 None:intergenic 50.0%
! GGAGATTGGTGTCTAGAGCA+AGG + Chr3:93456706-93456725 MsG0380017218.01.T01:CDS 50.0%
! GGGACTATTGTTTTCTGCCG+TGG + Chr3:93458311-93458330 MsG0380017218.01.T01:CDS 50.0%
AATGGGGCTTGGGCTTGATC+AGG + Chr3:93456733-93456752 MsG0380017218.01.T01:CDS 55.0%
AGGGGGTTGAGTAGCTCAAG+TGG - Chr3:93457639-93457658 None:intergenic 55.0%
ATGGGGCTTGGGCTTGATCA+GGG + Chr3:93456734-93456753 MsG0380017218.01.T01:CDS 55.0%
CAAACGAGATCCGGATGGTC+CGG + Chr3:93458703-93458722 MsG0380017218.01.T01:CDS 55.0%
CGACAGAGAGAATCCGAGGA+AGG + Chr3:93458007-93458026 MsG0380017218.01.T01:intron 55.0%
GGACCATCCGGATCTCGTTT+GGG - Chr3:93458704-93458723 None:intergenic 55.0%
GGCTAAGGGTTACGGGACTT+TGG + Chr3:93457059-93457078 MsG0380017218.01.T01:intron 55.0%
GGGACTTTGGTTGGGTAACC+AGG + Chr3:93457072-93457091 MsG0380017218.01.T01:intron 55.0%
TCCCGTAACCCTTAGCCTCT+AGG - Chr3:93457056-93457075 None:intergenic 55.0%
CACGTACCATCCGGACCATC+CGG - Chr3:93458716-93458735 None:intergenic 60.0%
CGGACCATCCGGATCTCGTT+TGG - Chr3:93458705-93458724 None:intergenic 60.0%
GGAGTCAAGGGGGAGAGTTG+TGG + Chr3:93456864-93456883 MsG0380017218.01.T01:intron 60.0%
GGTCCCAAACGAGATCCGGA+TGG + Chr3:93458698-93458717 MsG0380017218.01.T01:CDS 60.0%
CGAGATCCGGATGGTCCGGA+TGG + Chr3:93458707-93458726 MsG0380017218.01.T01:CDS 65.0%
CGGATGGTCCGGATGGTACG+TGG + Chr3:93458714-93458733 MsG0380017218.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93456648 93459057 93456648 ID=MsG0380017218.01;Name=MsG0380017218.01
Chr3 mRNA 93456648 93459057 93456648 ID=MsG0380017218.01.T01;Parent=MsG0380017218.01;Name=MsG0380017218.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.66|1|1|3|0|354
Chr3 exon 93456648 93456755 93456648 ID=MsG0380017218.01.T01:exon:25346;Parent=MsG0380017218.01.T01
Chr3 exon 93458013 93458204 93458013 ID=MsG0380017218.01.T01:exon:25347;Parent=MsG0380017218.01.T01
Chr3 exon 93458293 93459057 93458293 ID=MsG0380017218.01.T01:exon:25348;Parent=MsG0380017218.01.T01
Chr3 CDS 93456648 93456755 93456648 ID=MsG0380017218.01.T01:cds;Parent=MsG0380017218.01.T01
Chr3 CDS 93458013 93458204 93458013 ID=MsG0380017218.01.T01:cds;Parent=MsG0380017218.01.T01
Chr3 CDS 93458293 93459057 93458293 ID=MsG0380017218.01.T01:cds;Parent=MsG0380017218.01.T01
Gene Sequence

>MsG0380017218.01.T01

ATGGAGAAGAATCATTGGTTGAAACTTGAGGGGCTATCAAGAATAGTTGGGTACAAGTGGAGATTGGTGTCTAGAGCAAGGTTCAAATGGGGCTTGGGCTTGATCAGGAGAGAATCCGAGGAAGGAACAACAACAACAATTTCTTCATCTCCATTACAGTCAAAAGATCTCCCAAGAGAATCTGAGGAAACAGATAAATCAACTTCTGGTAAGGTTTCTAAAGCCTCTAGTTTCAGTTCTGTTAAAAAAGCTACACTAACTATGGTATCAAGATCAACTTCAAAGGAAAATGAGAAACATGATGGAGTTTTGGTTTCTGGGACTATTGTTTTCTGCCGTGGTAAGGATAATGTAATCAAAAGAGGGAGTATATCTTGTGAAGGTATAGCTTGTGATTGTTGTCATGTTAAATTCACTCTCACCAAATTTGAGGCTCATGCTTGTTGTACAAAACATAGACCATCCAAAAGTATCTTCTTGGAAGACGGAGCTTCATTGTTGGACTTGGACCGTCGAATGAAAGCTCTGAGCTCAGCCAATCAAAAGGGGAATGATTGTAATGCTGAAGCAAAATTGGAAGCAGCGAATAGTTGTGTTGCTGAAGAAAAGTCTCAACAAAATAATGATACATGTTCTGTTTGTTGTTTTGGGGGCGACTTAATATTATGTGATGGATGTCCTTCTTCGTTCCACTCTGATTGTCTAGGTCCCAAACGAGATCCGGATGGTCCGGATGGTACGTGGTTATGTCCGAGTTGCTGCTGCAGAATATGCCGTCAACGCACATGCAAAAAAGAATTTGCAAATGATAGTGATCACAATTTTCTTGCTTGTGTTCAATGTGAACAAAAATATCATTTTGGGTGCGTAAAGGCAACAGAAACTGCATCTGGTCGCATTATTATAAAGAAGAATTGGTTTTGCAGTAAAGTTTGTGGGAACATGTTCTTAAGTCTGGAGAATCTATTGGGGAAACCAATTAAGGTTGAGGTTGAGGAAGAGCCTGAGAATAATCTATTGAAGAAACCAATTTTTTTTTTTGAATCAGCAAATTTATTAGGCTAA
Protein sequence

>MsG0380017218.01.T01

MEKNHWLKLEGLSRIVGYKWRLVSRARFKWGLGLIRRESEEGTTTTISSSPLQSKDLPRESEETDKSTSGKVSKASSFSSVKKATLTMVSRSTSKENEKHDGVLVSGTIVFCRGKDNVIKRGSISCEGIACDCCHVKFTLTKFEAHACCTKHRPSKSIFLEDGASLLDLDRRMKALSSANQKGNDCNAEAKLEAANSCVAEEKSQQNNDTCSVCCFGGDLILCDGCPSSFHSDCLGPKRDPDGPDGTWLCPSCCCRICRQRTCKKEFANDSDHNFLACVQCEQKYHFGCVKATETASGRIIIKKNWFCSKVCGNMFLSLENLLGKPIKVEVEEEPENNLLKKPIFFFESANLLG*