AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017553.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017553.01.T01 MTR_3g108960 93.043 115 4 1 15 129 291 401 1.11e-74 227
MsG0380017553.01.T01 MTR_0117s0040 89.024 82 9 0 17 98 53 134 2.55e-49 158
MsG0380017553.01.T01 MTR_1g009613 67.708 96 28 1 15 110 239 331 6.69e-42 141
MsG0380017553.01.T01 MTR_4g127040 69.412 85 26 0 13 97 220 304 2.42e-40 137
MsG0380017553.01.T01 MTR_5g016610 65.476 84 29 0 12 95 173 256 5.68e-36 124
MsG0380017553.01.T01 MTR_4g094908 67.500 80 26 0 16 95 244 323 1.08e-34 122
MsG0380017553.01.T01 MTR_1g070455 59.302 86 35 0 16 101 271 356 5.81e-34 121
MsG0380017553.01.T01 MTR_2g016770 50.000 86 42 1 11 95 7 92 2.45e-26 98.2
MsG0380017553.01.T01 MTR_2g032030 51.163 86 37 1 15 95 239 324 1.81e-25 99.8
MsG0380017553.01.T01 MTR_2g032030 51.163 86 37 1 15 95 239 324 1.95e-25 100
MsG0380017553.01.T01 MTR_2g016770 51.852 81 38 1 16 95 4 84 5.29e-25 94.7
MsG0380017553.01.T01 MTR_2g083870 48.864 88 34 1 19 95 50 137 3.28e-24 94.0
MsG0380017553.01.T01 MTR_7g079040 49.398 83 37 1 13 95 134 211 5.20e-24 94.4
MsG0380017553.01.T01 MTR_8g028565 47.727 88 45 1 8 95 126 212 9.90e-23 91.3
MsG0380017553.01.T01 MTR_8g087000 57.627 59 25 0 37 95 76 134 1.10e-22 89.7
MsG0380017553.01.T01 MTR_8g087000 57.627 59 25 0 37 95 75 133 1.33e-22 89.4
MsG0380017553.01.T01 MTR_2g024350 56.250 64 28 0 32 95 2 65 1.36e-22 89.0
MsG0380017553.01.T01 MTR_7g109600 42.529 87 41 1 18 95 24 110 4.65e-22 88.2
MsG0380017553.01.T01 MTR_2g024380 48.750 80 40 1 16 95 230 308 1.38e-21 89.0
MsG0380017553.01.T01 MTR_5g043880 41.837 98 56 1 1 98 87 183 1.17e-20 84.7
MsG0380017553.01.T01 MTR_1g099600 41.111 90 52 1 6 95 154 242 4.44e-20 84.0
MsG0380017553.01.T01 MTR_8g098945 59.322 59 24 0 39 97 130 188 8.87e-20 82.4
MsG0380017553.01.T01 MTR_7g062220 37.615 109 53 3 17 114 106 210 7.09e-19 80.5
MsG0380017553.01.T01 MTR_2g023930 48.649 74 38 0 22 95 289 362 3.07e-18 79.7
MsG0380017553.01.T01 MTR_1g013760 52.632 57 27 0 39 95 141 197 9.16e-18 77.0
MsG0380017553.01.T01 MTR_3g053330 45.946 74 40 0 22 95 235 308 9.51e-18 78.2
MsG0380017553.01.T01 MTR_5g091390 47.222 72 37 1 25 96 144 214 1.18e-17 77.0
MsG0380017553.01.T01 MTR_4g007060 45.455 77 38 1 36 112 126 198 1.48e-17 76.6
MsG0380017553.01.T01 MTR_5g074400 45.783 83 44 1 13 95 395 476 1.66e-17 77.8
MsG0380017553.01.T01 MTR_8g092140 51.613 62 29 1 34 95 156 216 2.06e-17 75.5
MsG0380017553.01.T01 MTR_2g088000 47.297 74 39 0 22 95 333 406 2.08e-17 77.4
MsG0380017553.01.T01 MTR_4g007060 45.455 77 38 1 36 112 160 232 2.32e-17 76.6
MsG0380017553.01.T01 MTR_4g132430 47.297 74 39 0 22 95 245 318 2.76e-17 77.0
MsG0380017553.01.T01 MTR_1g086790 42.169 83 47 1 13 95 133 214 2.91e-17 76.3
MsG0380017553.01.T01 MTR_4g132430 47.297 74 39 0 22 95 111 184 3.11e-17 76.6
MsG0380017553.01.T01 MTR_7g109800 43.373 83 45 2 14 95 120 201 3.18e-17 75.9
MsG0380017553.01.T01 MTR_3g031220 47.436 78 40 1 18 95 345 421 3.30e-17 76.6
MsG0380017553.01.T01 MTR_3g031220 40.698 86 45 4 11 95 173 253 1.37e-11 60.8
MsG0380017553.01.T01 MTR_3g095080 51.613 62 29 1 34 95 140 200 3.77e-17 74.3
MsG0380017553.01.T01 MTR_5g094430 47.297 74 38 1 22 95 214 286 4.64e-17 76.3
MsG0380017553.01.T01 MTR_5g094430 47.297 74 38 1 22 95 236 308 4.74e-17 76.3
MsG0380017553.01.T01 MTR_3g095080 51.613 62 29 1 34 95 164 224 4.75e-17 74.7
MsG0380017553.01.T01 MTR_7g110720 45.946 74 40 0 22 95 200 273 5.49e-17 76.3
MsG0380017553.01.T01 MTR_3g106060 39.024 82 48 1 39 120 139 218 5.89e-17 75.1
MsG0380017553.01.T01 MTR_5g094430 47.297 74 38 1 22 95 348 420 5.89e-17 76.3
MsG0380017553.01.T01 MTR_7g100510 52.239 67 31 1 30 96 353 418 6.05e-17 75.9
MsG0380017553.01.T01 MTR_7g100510 44.186 86 41 4 30 114 180 259 7.51e-14 67.0
MsG0380017553.01.T01 MTR_4g094588 45.070 71 38 1 25 95 165 234 6.27e-17 75.5
MsG0380017553.01.T01 MTR_7g110720 45.946 74 40 0 22 95 173 246 7.13e-17 75.9
MsG0380017553.01.T01 MTR_3g056100 39.286 112 56 3 22 122 399 509 7.77e-17 75.9
MsG0380017553.01.T01 MTR_3g056100 39.286 112 56 3 22 122 242 352 7.96e-17 75.5
MsG0380017553.01.T01 MTR_7g009730 48.101 79 33 2 19 95 204 276 7.97e-17 75.9
MsG0380017553.01.T01 MTR_3g056100 39.286 112 56 3 22 122 386 496 8.05e-17 75.9
MsG0380017553.01.T01 MTR_3g056100 39.286 112 56 3 22 122 255 365 8.20e-17 75.5
MsG0380017553.01.T01 MTR_8g069935 38.889 90 55 0 8 97 301 390 9.17e-17 75.5
MsG0380017553.01.T01 MTR_2g033820 45.333 75 40 1 21 95 186 259 1.17e-16 75.1
MsG0380017553.01.T01 MTR_4g107970 47.368 76 36 3 22 95 162 235 1.22e-16 75.1
MsG0380017553.01.T01 MTR_8g007270 41.935 93 44 4 21 110 134 219 1.31e-16 73.2
MsG0380017553.01.T01 MTR_2g105060 36.047 86 43 1 22 95 66 151 1.37e-16 73.6
MsG0380017553.01.T01 MTR_8g067635 36.283 113 64 2 6 118 320 424 1.38e-16 75.1
MsG0380017553.01.T01 MTR_2g105060 36.047 86 43 1 22 95 141 226 1.44e-16 74.3
MsG0380017553.01.T01 MTR_4g107970 47.368 76 36 3 22 95 239 312 1.48e-16 75.1
MsG0380017553.01.T01 MTR_1g013790 51.667 60 29 0 36 95 99 158 2.92e-16 72.8
MsG0380017553.01.T01 MTR_4g094412 46.667 75 36 1 21 95 221 291 3.49e-16 73.9
MsG0380017553.01.T01 MTR_4g094412 46.667 75 36 1 21 95 230 300 3.58e-16 73.9
MsG0380017553.01.T01 MTR_1g015140 43.662 71 39 1 25 95 89 158 3.92e-16 70.5
MsG0380017553.01.T01 MTR_7g011820 53.226 62 28 1 34 95 406 466 4.98e-16 73.6
MsG0380017553.01.T01 MTR_7g011820 45.679 81 41 3 30 109 219 297 1.98e-14 68.9
MsG0380017553.01.T01 MTR_8g099350 41.237 97 52 3 8 100 101 196 6.22e-16 72.8
MsG0380017553.01.T01 MTR_8g067650 41.667 96 51 2 6 100 310 401 8.73e-16 72.8
MsG0380017553.01.T01 MTR_3g009470 45.455 77 41 1 19 95 476 551 9.86e-16 72.8
MsG0380017553.01.T01 MTR_3g009470 35.106 94 55 4 6 95 244 335 1.99e-12 63.2
MsG0380017553.01.T01 MTR_4g130900 55.000 60 26 1 36 95 357 415 1.12e-15 72.4
MsG0380017553.01.T01 MTR_4g122530 44.595 74 40 1 22 95 192 264 1.33e-15 72.0
MsG0380017553.01.T01 MTR_5g067680 52.381 63 28 1 37 97 201 263 1.45e-15 71.6
MsG0380017553.01.T01 MTR_5g042920 41.558 77 44 1 19 95 301 376 1.58e-15 72.0
MsG0380017553.01.T01 MTR_5g042920 47.761 67 32 3 30 95 142 206 2.01e-12 63.2
MsG0380017553.01.T01 MTR_4g013260 42.857 77 43 1 19 95 317 392 3.62e-15 70.9
MsG0380017553.01.T01 MTR_4g013260 45.614 57 30 1 39 95 185 240 2.51e-11 60.1
MsG0380017553.01.T01 MTR_2g045360 47.458 59 31 0 38 96 211 269 3.79e-15 70.9
MsG0380017553.01.T01 MTR_3g104750 36.667 90 56 1 10 99 76 164 4.72e-15 67.8
MsG0380017553.01.T01 MTR_1g077780 37.624 101 59 2 19 116 43 142 5.60e-15 67.4
MsG0380017553.01.T01 MTR_7g080000 46.154 78 38 2 21 95 412 488 7.99e-15 70.1
MsG0380017553.01.T01 MTR_7g080000 49.123 57 27 2 39 95 235 289 3.27e-11 59.7
MsG0380017553.01.T01 MTR_4g082580 48.387 62 31 1 34 95 274 334 1.03e-14 69.7
MsG0380017553.01.T01 MTR_7g080020 43.333 90 42 3 22 108 474 557 2.01e-14 68.9
MsG0380017553.01.T01 MTR_7g080020 45.161 62 32 2 39 100 281 340 2.26e-11 60.1
MsG0380017553.01.T01 MTR_7g117200 43.529 85 42 4 21 102 101 182 3.09e-14 67.8
MsG0380017553.01.T01 MTR_7g079010 40.000 80 44 2 19 95 119 197 7.17e-14 65.9
MsG0380017553.01.T01 MTR_1g078260 51.613 62 28 2 35 95 244 304 1.55e-13 66.2
MsG0380017553.01.T01 MTR_7g071120 41.558 77 44 1 19 95 305 380 1.80e-13 66.2
MsG0380017553.01.T01 MTR_3g090860 52.632 57 25 1 39 93 134 190 2.46e-13 65.5
MsG0380017553.01.T01 MTR_6g053200 35.789 95 54 2 9 97 296 389 2.97e-13 65.5
MsG0380017553.01.T01 MTR_6g086555 38.710 93 44 3 15 95 172 263 7.71e-13 64.3
MsG0380017553.01.T01 MTR_8g092010 44.262 61 33 1 35 95 105 164 1.14e-12 62.0
MsG0380017553.01.T01 MTR_7g028415 45.161 62 33 1 34 95 89 149 1.15e-12 61.6
MsG0380017553.01.T01 MTR_7g028710 45.161 62 33 1 34 95 89 149 1.15e-12 61.6
MsG0380017553.01.T01 MTR_5g097490 48.333 60 30 1 36 95 250 308 1.17e-12 63.5
MsG0380017553.01.T01 MTR_4g049760 47.170 53 28 0 43 95 295 347 1.44e-12 63.5
MsG0380017553.01.T01 MTR_3g009470 35.106 94 55 4 6 95 244 335 2.41e-12 62.8
MsG0380017553.01.T01 MTR_3g095040 41.935 62 35 1 35 96 115 175 3.29e-12 61.2
MsG0380017553.01.T01 MTR_4g049790 40.580 69 40 1 28 95 301 369 3.78e-12 62.4
MsG0380017553.01.T01 MTR_3g031220 40.698 86 45 4 11 95 173 253 9.74e-12 61.2
MsG0380017553.01.T01 MTR_8g027860 44.776 67 35 1 39 103 137 203 1.59e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017553.01.T01 AT4G31550 68.367 98 27 1 15 112 222 315 8.18e-44 146
MsG0380017553.01.T01 AT4G31550 69.072 97 26 1 16 112 224 316 1.58e-43 145
MsG0380017553.01.T01 AT2G24570 64.646 99 31 1 16 114 221 315 5.43e-41 139
MsG0380017553.01.T01 AT2G30590 61.364 88 34 0 15 102 290 377 9.88e-36 126
MsG0380017553.01.T01 AT4G24240 54.737 95 43 0 15 109 258 352 3.42e-35 124
MsG0380017553.01.T01 AT2G23320 60.494 81 32 0 15 95 217 297 1.61e-34 122
MsG0380017553.01.T01 AT3G04670 57.955 88 37 0 11 98 235 322 4.26e-34 121
MsG0380017553.01.T01 AT5G28650 56.818 88 38 0 11 98 235 322 1.69e-33 119
MsG0380017553.01.T01 AT2G34830 52.326 86 36 2 15 95 187 272 1.83e-25 99.8
MsG0380017553.01.T01 AT2G34830 52.326 86 36 2 15 95 196 281 2.00e-25 99.8
MsG0380017553.01.T01 AT1G29280 61.017 59 23 0 37 95 73 131 4.57e-25 96.3
MsG0380017553.01.T01 AT1G30650 52.326 86 36 2 15 95 189 274 8.36e-25 97.8
MsG0380017553.01.T01 AT3G58710 48.913 92 31 2 15 95 41 127 1.23e-24 95.1
MsG0380017553.01.T01 AT3G58710 49.451 91 30 2 16 95 43 128 2.26e-24 94.7
MsG0380017553.01.T01 AT5G45050 47.561 82 42 1 14 95 1157 1237 5.16e-23 93.6
MsG0380017553.01.T01 AT5G45050 47.561 82 42 1 14 95 1129 1209 5.26e-23 93.6
MsG0380017553.01.T01 AT5G45050 47.561 82 42 1 14 95 1018 1098 6.29e-23 93.2
MsG0380017553.01.T01 AT4G01250 48.193 83 41 1 13 95 105 185 2.12e-22 89.7
MsG0380017553.01.T01 AT5G52830 50.617 81 39 1 15 95 143 222 3.03e-22 90.1
MsG0380017553.01.T01 AT1G29860 48.649 74 37 1 22 95 120 192 6.25e-19 80.5
MsG0380017553.01.T01 AT4G31800 37.615 109 64 2 24 130 97 203 6.59e-19 79.7
MsG0380017553.01.T01 AT5G26170 38.710 93 51 2 12 99 82 173 6.67e-19 78.2
MsG0380017553.01.T01 AT4G31550 77.273 44 10 0 15 58 222 265 9.31e-19 79.7
MsG0380017553.01.T01 AT4G39410 48.193 83 39 3 16 95 198 279 9.41e-19 80.1
MsG0380017553.01.T01 AT1G69310 40.860 93 54 1 6 98 115 206 1.15e-18 79.7
MsG0380017553.01.T01 AT1G69310 40.860 93 54 1 6 98 115 206 1.15e-18 79.7
MsG0380017553.01.T01 AT1G69310 40.860 93 54 1 6 98 115 206 1.15e-18 79.7
MsG0380017553.01.T01 AT2G47260 35.714 126 77 3 8 130 142 266 1.33e-18 80.1
MsG0380017553.01.T01 AT4G31800 37.615 109 64 2 24 130 162 268 1.71e-18 79.3
MsG0380017553.01.T01 AT4G23550 51.613 62 30 0 35 96 137 198 2.18e-18 79.3
MsG0380017553.01.T01 AT4G18170 42.169 83 47 1 13 95 147 228 3.88e-18 78.6
MsG0380017553.01.T01 AT1G62300 47.297 74 39 0 22 95 296 369 1.04e-17 78.2
MsG0380017553.01.T01 AT4G04450 47.297 74 39 0 22 95 182 255 1.35e-17 77.8
MsG0380017553.01.T01 AT2G37260 46.512 86 45 1 13 98 244 328 1.50e-17 77.4
MsG0380017553.01.T01 AT5G49520 45.946 74 39 1 22 95 205 277 1.61e-17 77.4
MsG0380017553.01.T01 AT2G37260 46.512 86 45 1 13 98 242 326 1.62e-17 77.0
MsG0380017553.01.T01 AT5G07100 43.210 81 45 1 16 96 119 198 1.66e-17 75.5
MsG0380017553.01.T01 AT5G07100 43.210 81 45 1 16 96 119 198 1.66e-17 75.5
MsG0380017553.01.T01 AT5G07100 43.210 81 45 1 16 96 119 198 1.66e-17 75.5
MsG0380017553.01.T01 AT5G07100 43.210 81 45 1 16 96 119 198 1.66e-17 75.5
MsG0380017553.01.T01 AT4G22070 47.297 74 39 0 22 95 281 354 1.73e-17 77.8
MsG0380017553.01.T01 AT4G22070 47.297 74 39 0 22 95 281 354 1.73e-17 77.8
MsG0380017553.01.T01 AT4G22070 47.297 74 39 0 22 95 281 354 1.73e-17 77.8
MsG0380017553.01.T01 AT4G22070 47.297 74 39 0 22 95 281 354 1.73e-17 77.8
MsG0380017553.01.T01 AT4G04450 47.297 74 39 0 22 95 276 349 1.93e-17 77.4
MsG0380017553.01.T01 AT2G37260 46.512 86 45 1 13 98 324 408 2.31e-17 77.0
MsG0380017553.01.T01 AT3G04670 61.538 52 20 0 11 62 235 286 2.69e-17 75.9
MsG0380017553.01.T01 AT5G07100 43.210 81 45 1 16 96 212 291 3.73e-17 75.9
MsG0380017553.01.T01 AT4G24240 68.182 44 14 0 15 58 258 301 4.29e-17 75.5
MsG0380017553.01.T01 AT5G15130 48.684 76 35 3 22 95 169 242 4.80e-17 76.3
MsG0380017553.01.T01 AT5G15130 48.684 76 35 3 22 95 211 284 5.29e-17 76.3
MsG0380017553.01.T01 AT5G46350 46.479 71 37 1 25 95 170 239 5.30e-17 75.5
MsG0380017553.01.T01 AT2G04880 44.156 77 42 1 19 95 264 339 7.60e-17 75.9
MsG0380017553.01.T01 AT2G04880 44.156 77 42 1 19 95 288 363 7.78e-17 75.9
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 189 261 1.43e-16 74.7
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 189 261 1.43e-16 74.7
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 189 261 1.43e-16 74.7
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 189 261 1.43e-16 74.7
MsG0380017553.01.T01 AT2G44745 42.857 84 44 3 15 95 119 201 1.63e-16 72.8
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 293 365 1.92e-16 74.7
MsG0380017553.01.T01 AT4G01720 47.297 74 39 0 22 95 223 296 2.04e-16 74.7
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 365 437 2.29e-16 74.3
MsG0380017553.01.T01 AT4G26640 47.297 74 38 1 22 95 325 397 2.37e-16 74.3
MsG0380017553.01.T01 AT2G03340 44.156 77 42 1 19 95 396 471 4.32e-16 73.6
MsG0380017553.01.T01 AT2G03340 46.032 63 31 3 34 95 245 305 7.67e-12 61.6
MsG0380017553.01.T01 AT2G38470 45.946 74 39 1 22 95 346 418 4.55e-16 73.6
MsG0380017553.01.T01 AT2G38470 45.614 57 29 2 39 95 185 239 3.98e-11 59.3
MsG0380017553.01.T01 AT2G40740 45.783 83 41 3 15 93 148 230 4.86e-16 72.8
MsG0380017553.01.T01 AT3G01080 51.613 62 29 1 34 95 340 400 6.34e-16 73.2
MsG0380017553.01.T01 AT3G01080 43.529 85 45 3 35 118 201 283 1.92e-14 68.9
MsG0380017553.01.T01 AT2G40740 45.783 83 41 3 15 93 157 239 6.44e-16 72.4
MsG0380017553.01.T01 AT3G62340 38.000 100 61 1 16 115 96 194 6.86e-16 72.0
MsG0380017553.01.T01 AT2G23320 63.636 44 16 0 15 58 217 260 7.08e-16 72.0
MsG0380017553.01.T01 AT3G01080 51.613 62 29 1 34 95 302 362 8.66e-16 72.8
MsG0380017553.01.T01 AT3G01080 43.529 85 45 3 35 118 163 245 2.23e-14 68.6
MsG0380017553.01.T01 AT1G13960 44.156 77 42 1 19 95 390 465 9.30e-16 72.8
MsG0380017553.01.T01 AT1G13960 42.647 68 36 3 34 100 224 289 8.87e-12 61.2
MsG0380017553.01.T01 AT1G68150 44.156 77 39 1 19 95 220 292 1.02e-15 72.4
MsG0380017553.01.T01 AT1G18860 54.717 53 24 0 43 95 244 296 1.24e-15 72.4
MsG0380017553.01.T01 AT4G26440 40.816 98 52 2 18 115 352 443 1.24e-15 72.4
MsG0380017553.01.T01 AT4G26440 39.080 87 45 4 37 122 176 255 9.19e-12 61.2
MsG0380017553.01.T01 AT1G13960 46.479 71 37 1 25 95 243 312 1.40e-15 72.0
MsG0380017553.01.T01 AT1G13960 36.364 99 54 4 34 125 71 167 1.13e-11 60.8
MsG0380017553.01.T01 AT2G25000 47.368 57 30 0 39 95 104 160 1.55e-15 70.5
MsG0380017553.01.T01 AT2G25000 47.368 57 30 0 39 95 104 160 1.55e-15 70.5
MsG0380017553.01.T01 AT1G64000 49.180 61 30 1 35 95 111 170 1.64e-15 69.7
MsG0380017553.01.T01 AT5G56270 45.455 77 41 1 19 95 468 543 1.74e-15 72.0
MsG0380017553.01.T01 AT5G41570 41.250 80 46 1 16 95 76 154 2.13e-15 69.3
MsG0380017553.01.T01 AT2G25000 47.368 57 30 0 39 95 126 182 2.66e-15 70.1
MsG0380017553.01.T01 AT2G25000 47.368 57 30 0 39 95 147 203 3.64e-15 70.1
MsG0380017553.01.T01 AT5G45260 34.000 100 64 1 16 113 1186 1285 7.18e-15 70.5
MsG0380017553.01.T01 AT4G30935 51.667 60 28 1 36 95 329 387 8.12e-15 70.1
MsG0380017553.01.T01 AT3G01080 43.529 85 45 3 35 118 201 283 1.60e-14 68.9
MsG0380017553.01.T01 AT1G80840 41.667 60 35 0 36 95 144 203 5.25e-14 67.0
MsG0380017553.01.T01 AT1G69310 37.634 93 53 2 6 98 115 202 9.58e-14 66.2
MsG0380017553.01.T01 AT1G66550 38.889 90 45 2 14 93 76 165 1.09e-13 65.9
MsG0380017553.01.T01 AT5G64810 39.474 76 45 1 25 100 97 171 1.20e-13 64.7
MsG0380017553.01.T01 AT1G69810 36.364 99 53 5 22 117 187 278 1.48e-13 66.2
MsG0380017553.01.T01 AT1G69810 36.364 99 53 5 22 117 129 220 1.50e-13 66.2
MsG0380017553.01.T01 AT5G43290 50.000 58 28 1 39 96 115 171 1.85e-13 65.5
MsG0380017553.01.T01 AT1G66550 52.542 59 26 1 37 93 102 160 2.14e-13 65.1
MsG0380017553.01.T01 AT1G66560 50.847 59 27 1 37 93 102 160 4.38e-13 64.3
MsG0380017553.01.T01 AT2G21900 45.614 57 30 1 39 95 110 165 7.90e-13 62.8
MsG0380017553.01.T01 AT2G46130 45.161 62 33 1 34 95 26 86 9.43e-13 60.5
MsG0380017553.01.T01 AT5G13080 45.161 62 33 1 34 95 63 123 9.86e-13 61.6
MsG0380017553.01.T01 AT1G80590 44.304 79 37 2 39 115 86 159 1.56e-12 62.4
MsG0380017553.01.T01 AT2G46400 36.905 84 49 2 10 89 74 157 2.53e-12 62.4
MsG0380017553.01.T01 AT1G55600 45.902 61 32 1 35 95 304 363 2.70e-12 62.8
MsG0380017553.01.T01 AT3G01970 43.548 62 34 1 34 95 61 121 3.58e-12 60.1
MsG0380017553.01.T01 AT2G30250 37.838 74 45 1 22 95 312 384 7.62e-12 61.6
MsG0380017553.01.T01 AT4G11070 47.541 61 30 1 39 97 110 170 1.40e-11 60.5
MsG0380017553.01.T01 AT4G11070 47.541 61 30 1 39 97 142 202 1.48e-11 60.5
MsG0380017553.01.T01 AT4G23810 43.284 67 36 1 39 103 159 225 2.72e-11 59.7
MsG0380017553.01.T01 AT5G22570 47.761 67 33 1 36 100 108 174 2.98e-11 59.3

Find 45 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGAGTGGGAGCATGGATT+TGG 0.234912 3:-97812987 MsG0380017553.01.T01:CDS
GGGAGTGGGAGCATGGATTT+GGG 0.237711 3:-97812986 MsG0380017553.01.T01:CDS
TACGTTACAACTAGTATATT+TGG 0.242016 3:+97813082 None:intergenic
AATAATTCTGGTTCAGGTTC+AGG 0.270724 3:-97813007 MsG0380017553.01.T01:CDS
GTATGGCTCCAAACCGATTA+AGG 0.275343 3:-97813289 MsG0380017553.01.T01:CDS
TTTATTTCAGGGGTTATTAT+AGG 0.286785 3:-97813162 MsG0380017553.01.T01:intron
GGATGTGGTGTTCCCTTAAT+CGG 0.308127 3:+97813276 None:intergenic
CAGAATTATTCTCTTGCATT+GGG 0.323224 3:+97813020 None:intergenic
CAAGAGAATAATTCTGGTTC+AGG 0.324630 3:-97813013 MsG0380017553.01.T01:CDS
AATCACTCCGGCGATGTCTC+TGG 0.334104 3:-97813702 None:intergenic
CCAATGCAAGAGAATAATTC+TGG 0.372712 3:-97813019 MsG0380017553.01.T01:CDS
GAGTATTCATGGAGGAAGTA+TGG 0.388070 3:-97813306 MsG0380017553.01.T01:CDS
AAAATTGTCCAGCTAGGAAA+AGG 0.409042 3:-97813126 MsG0380017553.01.T01:CDS
TGGTGTTCCCTTAATCGGTT+TGG 0.409958 3:+97813281 None:intergenic
CCAGAATTATTCTCTTGCAT+TGG 0.415510 3:+97813019 None:intergenic
GGGGTGTTTGAGCTAACCTT+AGG 0.419189 3:-97812965 MsG0380017553.01.T01:CDS
GGAGTGGGAGCATGGATTTG+GGG 0.422889 3:-97812985 MsG0380017553.01.T01:CDS
TACCAGCAGATGAGTATTCA+TGG 0.434617 3:-97813317 MsG0380017553.01.T01:CDS
GAGTGGGAGCATGGATTTGG+GGG 0.475482 3:-97812984 MsG0380017553.01.T01:CDS
CTCCATGAATACTCATCTGC+TGG 0.476195 3:+97813315 None:intergenic
CTTGTTCTAATTCCCTCCTA+AGG 0.478049 3:+97812949 None:intergenic
ATCACTCCGGCGATGTCTCT+GGG 0.478282 3:-97813701 None:intergenic
GAGTCCCGTGCATAAGTTCA+AGG 0.483185 3:-97813350 MsG0380017553.01.T01:CDS
ATAATTCTGGTTCAGGTTCA+GGG 0.485370 3:-97813006 MsG0380017553.01.T01:CDS
TTGGGGCTTGATTATGAAGC+TGG 0.489027 3:+97813038 None:intergenic
TATGGCTCCAAACCGATTAA+GGG 0.491967 3:-97813288 MsG0380017553.01.T01:CDS
ATTAATTTACCTTCTGGCAG+TGG 0.494133 3:+97813655 None:intergenic
CTGGTTCAGGTTCAGGGAGT+GGG 0.498298 3:-97813000 MsG0380017553.01.T01:CDS
AGCTAGGAAAAGGGTGGAGA+AGG 0.508533 3:-97813116 MsG0380017553.01.T01:CDS
TCTGGTTCAGGTTCAGGGAG+TGG 0.509914 3:-97813001 MsG0380017553.01.T01:CDS
GTGTTTGAGCTAACCTTAGG+AGG 0.513166 3:-97812962 MsG0380017553.01.T01:CDS
AGGTTCAGGGAGTGGGAGCA+TGG 0.522327 3:-97812993 MsG0380017553.01.T01:CDS
ATCATCAGTCACCTTGGATG+TGG 0.536621 3:+97813261 None:intergenic
AAATTGTCCAGCTAGGAAAA+GGG 0.578813 3:-97813125 MsG0380017553.01.T01:CDS
CAATCCTTGAACTTATGCAC+GGG 0.601760 3:+97813346 None:intergenic
GCAGTGGCATTTCTTAGATG+CGG 0.605629 3:+97813671 None:intergenic
TAAGAAATGCCACTGCCAGA+AGG 0.606913 3:-97813664 MsG0380017553.01.T01:intron
GTGGCATTTCTTAGATGCGG+AGG 0.615532 3:+97813674 None:intergenic
AGAATTATTCTCTTGCATTG+GGG 0.619176 3:+97813021 None:intergenic
GCAATCCTTGAACTTATGCA+CGG 0.621816 3:+97813345 None:intergenic
TTAAGGGAACACCACATCCA+AGG 0.631610 3:-97813272 MsG0380017553.01.T01:intron
TGTTTGAGCTAACCTTAGGA+GGG 0.631673 3:-97812961 MsG0380017553.01.T01:CDS
TTGTCCAGCTAGGAAAAGGG+TGG 0.652692 3:-97813122 MsG0380017553.01.T01:CDS
GGGCTTGATTATGAAGCTGG+TGG 0.693764 3:+97813041 None:intergenic
CAGCAGATGAGTATTCATGG+AGG 0.765821 3:-97813314 MsG0380017553.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTAGGAAAAAT+CGG - Chr3:97813255-97813274 MsG0380017553.01.T01:intron 10.0%
!! ATTTATTTGAATATGGTAAA+AGG - Chr3:97813422-97813441 MsG0380017553.01.T01:intron 15.0%
!! TAAATGACAAATAAAATATG+CGG + Chr3:97813161-97813180 None:intergenic 15.0%
!!! CGTTTTGATTTTATTTTTTT+AGG - Chr3:97813246-97813265 MsG0380017553.01.T01:intron 15.0%
!! AAATGACAAATAAAATATGC+GGG + Chr3:97813160-97813179 None:intergenic 20.0%
!! ACCATATTCAAATAAATCAA+CGG + Chr3:97813419-97813438 None:intergenic 20.0%
!! ATTAATTTACGAGAATCATT+TGG - Chr3:97813006-97813025 MsG0380017553.01.T01:CDS 20.0%
!!! GTTTTGTTTTGTTTATTTCA+GGG - Chr3:97813471-97813490 MsG0380017553.01.T01:intron 20.0%
!!! TGTTTTGTTTTGTTTATTTC+AGG - Chr3:97813470-97813489 MsG0380017553.01.T01:intron 20.0%
!!! TTTTGTTTTGTTTATTTCAG+GGG - Chr3:97813472-97813491 MsG0380017553.01.T01:intron 20.0%
! AATGACAAATAAAATATGCG+GGG + Chr3:97813159-97813178 None:intergenic 25.0%
! GGTAAAAGGAATGTTTAATA+AGG - Chr3:97813436-97813455 MsG0380017553.01.T01:intron 25.0%
! TACGTTACAACTAGTATATT+TGG + Chr3:97813565-97813584 None:intergenic 25.0%
! TCGTAAATTAATTTACCTTC+TGG + Chr3:97812998-97813017 None:intergenic 25.0%
! TTTATTTCAGGGGTTATTAT+AGG - Chr3:97813482-97813501 MsG0380017553.01.T01:intron 25.0%
AGAATTATTCTCTTGCATTG+GGG + Chr3:97813626-97813645 None:intergenic 30.0%
CAGAATTATTCTCTTGCATT+GGG + Chr3:97813627-97813646 None:intergenic 30.0%
TGGTAATAGTCAACATTCAA+TGG - Chr3:97813026-97813045 MsG0380017553.01.T01:CDS 30.0%
!! GCCGTTGATTTATTTGAATA+TGG - Chr3:97813415-97813434 MsG0380017553.01.T01:intron 30.0%
!! TTTTTAGGAAAAATCGGAAC+AGG - Chr3:97813261-97813280 MsG0380017553.01.T01:intron 30.0%
AAAATTGTCCAGCTAGGAAA+AGG - Chr3:97813518-97813537 MsG0380017553.01.T01:intron 35.0%
AAATCAATCATCAGTCACCT+TGG + Chr3:97813392-97813411 None:intergenic 35.0%
AAATTGTCCAGCTAGGAAAA+GGG - Chr3:97813519-97813538 MsG0380017553.01.T01:intron 35.0%
ATTAATTTACCTTCTGGCAG+TGG + Chr3:97812992-97813011 None:intergenic 35.0%
CCAATGCAAGAGAATAATTC+TGG - Chr3:97813625-97813644 MsG0380017553.01.T01:intron 35.0%
CCAGAATTATTCTCTTGCAT+TGG + Chr3:97813628-97813647 None:intergenic 35.0%
CGTTTGTCGTAAAAAAGACA+AGG - Chr3:97813105-97813124 MsG0380017553.01.T01:CDS 35.0%
TAGTCAACATTCAATGGTCA+CGG - Chr3:97813032-97813051 MsG0380017553.01.T01:CDS 35.0%
TGTCTAAAAATTGTCCAGCT+AGG - Chr3:97813512-97813531 MsG0380017553.01.T01:intron 35.0%
!! AATAATTCTGGTTCAGGTTC+AGG - Chr3:97813637-97813656 MsG0380017553.01.T01:intron 35.0%
!! ATAATTCTGGTTCAGGTTCA+GGG - Chr3:97813638-97813657 MsG0380017553.01.T01:intron 35.0%
!! CAAGAGAATAATTCTGGTTC+AGG - Chr3:97813631-97813650 MsG0380017553.01.T01:intron 35.0%
CAATCCTTGAACTTATGCAC+GGG + Chr3:97813301-97813320 None:intergenic 40.0%
GAGTATTCATGGAGGAAGTA+TGG - Chr3:97813338-97813357 MsG0380017553.01.T01:CDS 40.0%
GCAATCCTTGAACTTATGCA+CGG + Chr3:97813302-97813321 None:intergenic 40.0%
TACCAGCAGATGAGTATTCA+TGG - Chr3:97813327-97813346 MsG0380017553.01.T01:CDS 40.0%
TATGGCTCCAAACCGATTAA+GGG - Chr3:97813356-97813375 MsG0380017553.01.T01:CDS 40.0%
TGTTTGAGCTAACCTTAGGA+GGG - Chr3:97813683-97813702 MsG0380017553.01.T01:CDS 40.0%
ATCATCAGTCACCTTGGATG+TGG + Chr3:97813386-97813405 None:intergenic 45.0%
CAGCAGATGAGTATTCATGG+AGG - Chr3:97813330-97813349 MsG0380017553.01.T01:CDS 45.0%
CTCCATGAATACTCATCTGC+TGG + Chr3:97813332-97813351 None:intergenic 45.0%
GCAGTGGCATTTCTTAGATG+CGG + Chr3:97812976-97812995 None:intergenic 45.0%
GGATGTGGTGTTCCCTTAAT+CGG + Chr3:97813371-97813390 None:intergenic 45.0%
GTATGGCTCCAAACCGATTA+AGG - Chr3:97813355-97813374 MsG0380017553.01.T01:CDS 45.0%
GTGTTTGAGCTAACCTTAGG+AGG - Chr3:97813682-97813701 MsG0380017553.01.T01:CDS 45.0%
TAAGAAATGCCACTGCCAGA+AGG - Chr3:97812980-97812999 MsG0380017553.01.T01:CDS 45.0%
TGGTGTTCCCTTAATCGGTT+TGG + Chr3:97813366-97813385 None:intergenic 45.0%
TTAAGGGAACACCACATCCA+AGG - Chr3:97813372-97813391 MsG0380017553.01.T01:CDS 45.0%
TTGGGGCTTGATTATGAAGC+TGG + Chr3:97813609-97813628 None:intergenic 45.0%
AGCTAGGAAAAGGGTGGAGA+AGG - Chr3:97813528-97813547 MsG0380017553.01.T01:intron 50.0%
GAGTCCCGTGCATAAGTTCA+AGG - Chr3:97813294-97813313 MsG0380017553.01.T01:CDS 50.0%
GGGCTTGATTATGAAGCTGG+TGG + Chr3:97813606-97813625 None:intergenic 50.0%
GTGGCATTTCTTAGATGCGG+AGG + Chr3:97812973-97812992 None:intergenic 50.0%
TTGTCCAGCTAGGAAAAGGG+TGG - Chr3:97813522-97813541 MsG0380017553.01.T01:intron 50.0%
! GGGGTGTTTGAGCTAACCTT+AGG - Chr3:97813679-97813698 MsG0380017553.01.T01:CDS 50.0%
! TTCTCCACCCTTTTCCTAGC+TGG + Chr3:97813529-97813548 None:intergenic 50.0%
! AGGGAGTGGGAGCATGGATT+TGG - Chr3:97813657-97813676 MsG0380017553.01.T01:intron 55.0%
! CTGGTTCAGGTTCAGGGAGT+GGG - Chr3:97813644-97813663 MsG0380017553.01.T01:intron 55.0%
! GAGTGGGAGCATGGATTTGG+GGG - Chr3:97813660-97813679 MsG0380017553.01.T01:intron 55.0%
! GGAGTGGGAGCATGGATTTG+GGG - Chr3:97813659-97813678 MsG0380017553.01.T01:intron 55.0%
! GGGAGTGGGAGCATGGATTT+GGG - Chr3:97813658-97813677 MsG0380017553.01.T01:intron 55.0%
! TCTGGTTCAGGTTCAGGGAG+TGG - Chr3:97813643-97813662 MsG0380017553.01.T01:intron 55.0%
AGGTTCAGGGAGTGGGAGCA+TGG - Chr3:97813651-97813670 MsG0380017553.01.T01:intron 60.0%
TTCAATGGTCACGGCACGCG+TGG - Chr3:97813041-97813060 MsG0380017553.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97812955 97813711 97812955 ID=MsG0380017553.01;Name=MsG0380017553.01
Chr3 mRNA 97812955 97813711 97812955 ID=MsG0380017553.01.T01;Parent=MsG0380017553.01;Name=MsG0380017553.01.T01;_AED=0.39;_eAED=0.46;_QI=0|0|0|1|1|1|3|0|130
Chr3 exon 97813665 97813711 97813665 ID=MsG0380017553.01.T01:exon:21373;Parent=MsG0380017553.01.T01
Chr3 exon 97813273 97813398 97813273 ID=MsG0380017553.01.T01:exon:21372;Parent=MsG0380017553.01.T01
Chr3 exon 97812955 97813174 97812955 ID=MsG0380017553.01.T01:exon:21371;Parent=MsG0380017553.01.T01
Chr3 CDS 97813665 97813711 97813665 ID=MsG0380017553.01.T01:cds;Parent=MsG0380017553.01.T01
Chr3 CDS 97813273 97813398 97813273 ID=MsG0380017553.01.T01:cds;Parent=MsG0380017553.01.T01
Chr3 CDS 97812955 97813174 97812955 ID=MsG0380017553.01.T01:cds;Parent=MsG0380017553.01.T01
Gene Sequence

>MsG0380017553.01.T01

ATGTCTCTGGGAAAACCTCCGCATCTAAGAAATGCCACTGCCAGAAGGAAAAATCGGAACAGGAGACAAGTGAGAGTCCCGTGCATAAGTTCAAGGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTATGGCTCCAAACCGATTAAGGGAACACCACATCCAAGGGGTTATTATAGGTGCACTATGTCTAAAAATTGTCCAGCTAGGAAAAGGGTGGAGAAGGCGAAAGATGATCCAAATATACTAGTTGTAACGTATGAGTTTGAGCATCGTCACCACCAGCTTCATAATCAAGCCCCAATGCAAGAGAATAATTCTGGTTCAGGTTCAGGGAGTGGGAGCATGGATTTGGGGGTGTTTGAGCTAACCTTAGGAGGGAATTAG
Protein sequence

>MsG0380017553.01.T01

MSLGKPPHLRNATARRKNRNRRQVRVPCISSRIADIPADEYSWRKYGSKPIKGTPHPRGYYRCTMSKNCPARKRVEKAKDDPNILVVTYEFEHRHHQLHNQAPMQENNSGSGSGSGSMDLGVFELTLGGN*