AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017616.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017616.01.T01 MTR_4g098870 82.653 98 12 2 143 236 296 392 3.27e-45 159
MsG0380017616.01.T01 MTR_4g098870 82.653 98 12 2 143 236 276 372 3.28e-45 159
MsG0380017616.01.T01 MTR_4g098870 82.653 98 12 2 143 236 296 392 3.52e-45 159
MsG0380017616.01.T01 MTR_4g098870 82.653 98 12 2 143 236 276 372 3.65e-45 159
MsG0380017616.01.T01 MTR_4g098870 82.653 98 12 2 143 236 315 411 5.08e-45 159
MsG0380017616.01.T01 MTR_5g014040 86.207 58 8 0 176 233 313 370 5.93e-27 108
MsG0380017616.01.T01 MTR_5g014040 79.365 63 8 1 176 233 273 335 8.05e-25 102
MsG0380017616.01.T01 MTR_5g014040 79.365 63 8 1 176 233 313 375 9.03e-25 102
MsG0380017616.01.T01 MTR_4g078810 65.574 61 21 0 176 236 160 220 2.56e-24 100
MsG0380017616.01.T01 MTR_2g090675 65.574 61 21 0 176 236 163 223 9.33e-24 99.0
MsG0380017616.01.T01 MTR_2g450070 57.377 61 26 0 176 236 215 275 8.91e-18 82.4
MsG0380017616.01.T01 MTR_2g450070 57.377 61 26 0 176 236 215 275 8.98e-18 82.4
MsG0380017616.01.T01 MTR_3g106220 61.404 57 22 0 176 232 200 256 6.11e-17 80.1
MsG0380017616.01.T01 MTR_4g121020 61.404 57 22 0 176 232 217 273 7.23e-17 80.1
MsG0380017616.01.T01 MTR_4g121020 61.404 57 22 0 176 232 217 273 7.31e-17 79.7
MsG0380017616.01.T01 MTR_4g121020 61.404 57 22 0 176 232 113 169 7.40e-17 79.7
MsG0380017616.01.T01 MTR_7g089010 66.000 50 17 0 179 228 96 145 4.73e-16 76.3
MsG0380017616.01.T01 MTR_4g064730 66.000 50 17 0 179 228 136 185 6.34e-16 75.9
MsG0380017616.01.T01 MTR_3g025840 82.500 40 7 0 18 57 1 40 7.98e-16 75.5
MsG0380017616.01.T01 MTR_1g032570 56.140 57 25 0 176 232 202 258 2.11e-15 75.5
MsG0380017616.01.T01 MTR_4g131570 67.347 49 16 0 179 227 208 256 2.22e-15 75.5
MsG0380017616.01.T01 MTR_1g032570 56.140 57 25 0 176 232 133 189 2.30e-15 75.5
MsG0380017616.01.T01 MTR_3g102600 56.604 53 23 0 175 227 84 136 2.65e-15 72.0
MsG0380017616.01.T01 MTR_3g102600 56.604 53 23 0 175 227 133 185 4.48e-15 72.4
MsG0380017616.01.T01 MTR_4g131580 59.016 61 23 1 179 239 205 263 7.03e-15 73.9
MsG0380017616.01.T01 MTR_1g013170 59.259 54 22 0 179 232 196 249 7.12e-15 73.9
MsG0380017616.01.T01 MTR_3g102590 62.264 53 20 0 175 227 144 196 7.37e-15 72.0
MsG0380017616.01.T01 MTR_7g026400 52.459 61 29 0 179 239 162 222 9.04e-15 73.6
MsG0380017616.01.T01 MTR_7g117705 57.895 57 24 0 176 232 193 249 9.88e-15 73.6
MsG0380017616.01.T01 MTR_4g131600 63.265 49 18 0 179 227 206 254 1.45e-14 73.2
MsG0380017616.01.T01 MTR_2g034960 52.632 57 27 0 176 232 213 269 1.68e-14 72.8
MsG0380017616.01.T01 MTR_1g080330 46.000 100 33 4 128 226 149 228 1.89e-14 71.6
MsG0380017616.01.T01 MTR_4g021760 28.889 180 100 5 47 226 70 221 2.22e-14 71.6
MsG0380017616.01.T01 MTR_1g013180 60.377 53 21 0 176 228 344 396 2.28e-14 72.4
MsG0380017616.01.T01 MTR_8g079940 30.973 226 98 10 40 228 59 263 2.31e-14 72.4
MsG0380017616.01.T01 MTR_4g086835 53.704 54 25 0 179 232 279 332 2.46e-14 72.0
MsG0380017616.01.T01 MTR_1g080330 46.000 100 33 4 128 226 149 228 2.49e-14 72.0
MsG0380017616.01.T01 MTR_3g102600 52.941 51 24 0 175 225 84 134 2.21e-13 65.9
MsG0380017616.01.T01 MTR_3g102600 52.941 51 24 0 175 225 133 183 3.64e-13 66.2
MsG0380017616.01.T01 MTR_5g017980 55.769 52 23 0 179 230 197 248 4.94e-13 67.8
MsG0380017616.01.T01 MTR_5g017980 55.769 52 23 0 179 230 198 249 5.02e-13 67.8
MsG0380017616.01.T01 MTR_3g086100 57.407 54 23 0 175 228 200 253 6.20e-13 68.2
MsG0380017616.01.T01 MTR_3g086100 57.407 54 23 0 175 228 129 182 6.54e-13 68.2
MsG0380017616.01.T01 MTR_4g086835 52.727 55 25 1 179 232 279 333 9.24e-13 67.4
MsG0380017616.01.T01 MTR_0450s0040 47.458 59 31 0 179 237 174 232 1.33e-12 66.6
MsG0380017616.01.T01 MTR_4g113140 52.632 57 26 1 179 234 240 296 1.34e-12 67.0
MsG0380017616.01.T01 MTR_4g021790 26.131 199 115 6 34 228 52 222 2.69e-12 65.5
MsG0380017616.01.T01 MTR_3g102590 61.224 49 19 0 175 223 144 192 3.06e-12 63.9
MsG0380017616.01.T01 MTR_1g053830 47.619 63 32 1 175 236 19 81 3.43e-12 61.6
MsG0380017616.01.T01 MTR_5g054300 56.604 53 22 1 179 230 203 255 4.53e-12 65.5
MsG0380017616.01.T01 MTR_7g098250 65.306 49 16 1 179 226 267 315 4.88e-12 65.5
MsG0380017616.01.T01 MTR_1g093080 54.717 53 23 1 179 230 216 268 7.49e-12 64.7
MsG0380017616.01.T01 MTR_4g021855 53.704 54 25 0 175 228 169 222 8.42e-12 64.3
MsG0380017616.01.T01 MTR_7g115530 50.000 66 31 2 179 242 223 288 1.40e-11 63.5
MsG0380017616.01.T01 MTR_5g017980 54.717 53 23 1 179 230 198 250 1.92e-11 63.2
MsG0380017616.01.T01 MTR_8g105600 55.769 52 23 0 177 228 190 241 2.17e-11 63.5
MsG0380017616.01.T01 MTR_7g115530 50.000 66 31 2 179 242 223 288 2.52e-11 62.8
MsG0380017616.01.T01 MTR_7g115530 50.000 66 31 2 179 242 223 288 2.57e-11 63.2
MsG0380017616.01.T01 MTR_7g115530 61.224 49 18 1 179 226 223 271 3.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 2.96e-26 106
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 2.96e-26 106
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 2.96e-26 106
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 2.96e-26 106
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 2.96e-26 106
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 2.96e-26 106
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 3.16e-26 107
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 3.16e-26 107
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 3.16e-26 107
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 3.16e-26 107
MsG0380017616.01.T01 AT4G18020 47.458 118 49 2 127 244 262 366 3.16e-26 107
MsG0380017616.01.T01 AT2G20570 55.556 90 36 1 151 236 142 231 6.32e-25 102
MsG0380017616.01.T01 AT5G44190 70.492 61 18 0 176 236 149 209 7.33e-25 101
MsG0380017616.01.T01 AT5G44190 70.492 61 18 0 176 236 149 209 8.29e-25 101
MsG0380017616.01.T01 AT2G20570 70.492 61 18 0 176 236 155 215 2.81e-24 100
MsG0380017616.01.T01 AT5G58080 63.158 57 21 0 176 232 196 252 5.45e-18 83.2
MsG0380017616.01.T01 AT5G59570 62.963 54 20 0 179 232 146 199 2.33e-17 79.7
MsG0380017616.01.T01 AT5G59570 62.963 54 20 0 179 232 146 199 2.33e-17 79.7
MsG0380017616.01.T01 AT2G40970 64.815 54 19 0 179 232 110 163 3.74e-17 78.6
MsG0380017616.01.T01 AT5G05090 66.000 50 17 0 179 228 86 135 1.10e-16 77.4
MsG0380017616.01.T01 AT3G10760 61.111 54 21 0 179 232 110 163 1.13e-16 78.6
MsG0380017616.01.T01 AT3G46640 66.000 50 17 0 179 228 149 198 2.79e-16 77.0
MsG0380017616.01.T01 AT3G46640 66.000 50 17 0 179 228 149 198 2.79e-16 77.0
MsG0380017616.01.T01 AT3G46640 66.000 50 17 0 179 228 149 198 3.29e-16 77.0
MsG0380017616.01.T01 AT2G25180 64.912 57 20 0 176 232 197 253 4.59e-16 77.4
MsG0380017616.01.T01 AT3G16857 59.649 57 23 0 176 232 169 225 1.18e-15 76.3
MsG0380017616.01.T01 AT3G16857 59.649 57 23 0 176 232 239 295 1.24e-15 76.3
MsG0380017616.01.T01 AT3G16857 59.649 57 23 0 176 232 239 295 1.24e-15 76.3
MsG0380017616.01.T01 AT2G01760 56.897 58 25 0 175 232 136 193 1.51e-15 75.1
MsG0380017616.01.T01 AT2G01760 56.897 58 25 0 175 232 229 286 1.72e-15 75.5
MsG0380017616.01.T01 AT2G01760 56.897 58 25 0 175 232 201 258 1.83e-15 75.5
MsG0380017616.01.T01 AT1G25550 60.377 53 20 1 179 230 214 266 1.73e-14 72.4
MsG0380017616.01.T01 AT4G31920 61.538 52 20 0 176 227 185 236 3.07e-14 72.0
MsG0380017616.01.T01 AT1G68670 58.491 53 21 1 179 230 220 272 1.10e-13 70.1
MsG0380017616.01.T01 AT1G67710 61.818 55 20 1 175 228 120 174 6.14e-13 68.2
MsG0380017616.01.T01 AT1G67710 61.818 55 20 1 175 228 129 183 7.36e-13 67.8
MsG0380017616.01.T01 AT1G67710 61.818 55 20 1 175 228 194 248 7.40e-13 68.2
MsG0380017616.01.T01 AT2G03500 52.632 57 26 1 179 234 238 294 7.80e-13 67.8
MsG0380017616.01.T01 AT3G25790 56.604 53 22 1 179 230 201 253 1.33e-12 67.0
MsG0380017616.01.T01 AT4G37180 50.704 71 34 1 161 230 197 267 1.51e-12 66.6
MsG0380017616.01.T01 AT4G37180 50.704 71 34 1 161 230 204 274 1.70e-12 66.6
MsG0380017616.01.T01 AT2G20400 59.322 59 23 1 179 236 236 294 1.29e-11 64.3
MsG0380017616.01.T01 AT2G20400 59.322 59 23 1 179 236 236 294 1.33e-11 63.9
MsG0380017616.01.T01 AT5G07210 47.368 57 30 0 176 232 224 280 1.64e-11 63.9
MsG0380017616.01.T01 AT5G07210 47.368 57 30 0 176 232 232 288 1.68e-11 63.9
MsG0380017616.01.T01 AT4G28610 52.459 61 28 1 179 238 230 290 3.18e-11 63.2
MsG0380017616.01.T01 AT3G13040 57.143 56 23 1 175 229 242 297 6.54e-11 62.0
MsG0380017616.01.T01 AT3G13040 57.143 56 23 1 175 229 242 297 6.54e-11 62.0
MsG0380017616.01.T01 AT3G13040 57.143 56 23 1 175 229 242 297 6.54e-11 62.0

Find 80 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTATTCCTTCTCGAATAT+TGG 0.160903 3:-98564667 MsG0380017616.01.T01:CDS
TATCTCTTGAACCTTGTAAA+TGG 0.204425 3:-98564343 MsG0380017616.01.T01:three_prime_UTR
ACCGAGTTGGCTCGGATATT+TGG 0.217124 3:-98567644 MsG0380017616.01.T01:CDS
ATCAGAACCAAATCTGAAAA+AGG 0.233092 3:-98567748 MsG0380017616.01.T01:CDS
CATCTATAACCTTCGATCTA+TGG 0.272522 3:+98567899 None:intergenic
GAAGGGTTCTAGATTTGTTT+TGG 0.280064 3:+98568043 None:intergenic
TTGGGAATTTGTATACAAAA+TGG 0.303253 3:-98564319 MsG0380017616.01.T01:three_prime_UTR
ATGGAAGCTTTGATCAGTTA+TGG 0.352182 3:-98567828 MsG0380017616.01.T01:CDS
GTAATGACATTGACACGAAC+TGG 0.358024 3:+98567798 None:intergenic
AGGACAAGCTCAGAAATATT+TGG 0.362029 3:-98565261 MsG0380017616.01.T01:CDS
TGGAAGAAAGGGTTTGAGGC+AGG 0.375876 3:+98568063 None:intergenic
TAATGTGGCAAGCCATCTTC+AGG 0.386166 3:-98564613 MsG0380017616.01.T01:intron
TCCGTTGCGCCTATCATTCA+AGG 0.393615 3:-98567203 MsG0380017616.01.T01:CDS
TTGAACCTTGTAAATGGGTT+GGG 0.399685 3:-98564337 MsG0380017616.01.T01:three_prime_UTR
TTGTTTAGAACCTTCACATT+TGG 0.405530 3:+98564998 None:intergenic
TGGAAGCTTTGATCAGTTAT+GGG 0.406259 3:-98567827 MsG0380017616.01.T01:CDS
ATCTCTTGAACCTTGTAAAT+GGG 0.411820 3:-98564342 MsG0380017616.01.T01:three_prime_UTR
CATAGATCGAAGGTTATAGA+TGG 0.421466 3:-98567898 MsG0380017616.01.T01:exon
ATCATTAGCGAACTGAATAT+CGG 0.435710 3:-98567969 MsG0380017616.01.T01:five_prime_UTR
GGTTTGAGGCAGGGAAGGAA+AGG 0.441105 3:+98568073 None:intergenic
ACATCAGGACCTTGAATGAT+AGG 0.448658 3:+98567194 None:intergenic
ACATATCTTACCGAAGGAAA+TGG 0.458461 3:-98564425 MsG0380017616.01.T01:CDS
TCAGAAATATTTGGCAGCAT+TGG 0.459276 3:-98565252 MsG0380017616.01.T01:CDS
AATATGCTTGACATATATAT+AGG 0.459459 3:-98564384 MsG0380017616.01.T01:exon
GAAAGGGTTTGAGGCAGGGA+AGG 0.464225 3:+98568068 None:intergenic
CTTGAACCTTGTAAATGGGT+TGG 0.468348 3:-98564338 MsG0380017616.01.T01:three_prime_UTR
TAGAAGTTGATATGAAAGGA+AGG 0.470496 3:+98568025 None:intergenic
TTGTATTTAGCCATTTCCTT+CGG 0.476439 3:+98564415 None:intergenic
TGTGCTCGTCGTGTTTGCCT+TGG 0.477507 3:+98567946 None:intergenic
GGAAGAAAGGGTTTGAGGCA+GGG 0.487210 3:+98568064 None:intergenic
CTCAAACAGGCATTCAATGC+TGG 0.493866 3:-98565143 MsG0380017616.01.T01:intron
TGAGTAGAAGTTGATATGAA+AGG 0.494199 3:+98568021 None:intergenic
TGAGTCTGAGCAACGACATC+AGG 0.494396 3:+98567179 None:intergenic
CTGAGCTTGTCCTCGGAGAG+TGG 0.496448 3:+98565271 None:intergenic
AATGTTGGATCTACGATCCA+TGG 0.500572 3:+98567870 None:intergenic
GTGGACTGTGTATTCCGTTA+TGG 0.500845 3:-98564280 MsG0380017616.01.T01:three_prime_UTR
TACTTTGGTCTCAGGTAGAC+TGG 0.503714 3:-98564746 MsG0380017616.01.T01:CDS
ATTCATGATTGATCTGAAGA+AGG 0.505823 3:+98567990 None:intergenic
ATCTCATGTTTCTCCGTCGA+TGG 0.513865 3:-98567678 MsG0380017616.01.T01:CDS
AATATTGGATCTAATGAAAG+TGG 0.519493 3:-98564652 MsG0380017616.01.T01:CDS
GGATCTTGCTCTTACCGAGT+TGG 0.525015 3:-98567657 MsG0380017616.01.T01:CDS
GTTTGAGGCAGGGAAGGAAA+GGG 0.527325 3:+98568074 None:intergenic
ACAACATCTGCAAATAAAGT+AGG 0.528162 3:-98564959 MsG0380017616.01.T01:CDS
GGTTATAGATGGAGATTCCA+TGG 0.530246 3:-98567887 MsG0380017616.01.T01:exon
TTGCTCTTACCGAGTTGGCT+CGG 0.538423 3:-98567652 MsG0380017616.01.T01:CDS
ATTAGATCCAATATTCGAGA+AGG 0.541398 3:+98564660 None:intergenic
ATCTAAACATCATGCCATAA+CGG 0.541538 3:+98564266 None:intergenic
AAATTCCCAACCCATTTACA+AGG 0.542035 3:+98564332 None:intergenic
TGTCCTCGGAGAGTGGTTTG+CGG 0.546327 3:+98565278 None:intergenic
AATATTTCTGAGCTTGTCCT+CGG 0.546887 3:+98565264 None:intergenic
TGAGATCTCGATTGAAGATG+AGG 0.546965 3:-98564232 MsG0380017616.01.T01:three_prime_UTR
CACAGATCGAAGGTTAGAGA+TGG 0.547649 3:-98567927 MsG0380017616.01.T01:five_prime_UTR
ACATGATAAGAGTGATGAGA+TGG 0.558935 3:+98564207 None:intergenic
GTTTGAAAGTATACTTGTGA+GGG 0.562377 3:-98564173 MsG0380017616.01.T01:three_prime_UTR
GGTAGATTATAACCTGAAGA+TGG 0.564115 3:+98564601 None:intergenic
ACCACAGTTACCAAATGTGA+AGG 0.574268 3:-98565008 MsG0380017616.01.T01:intron
GTGAAGGCAGTGGAGCAACT+AGG 0.575398 3:-98564699 MsG0380017616.01.T01:CDS
TTCATGATTGATCTGAAGAA+GGG 0.578233 3:+98567991 None:intergenic
TAATGACATTGACACGAACT+GGG 0.581222 3:+98567799 None:intergenic
ACCAAATATCCGAGCCAACT+CGG 0.582938 3:+98567643 None:intergenic
AGCGAACTGAATATCGGCCA+AGG 0.594367 3:-98567963 MsG0380017616.01.T01:five_prime_UTR
GTTGGCTCGGATATTTGGTG+TGG 0.596388 3:-98567639 MsG0380017616.01.T01:CDS
ACACGACGAGCACAGATCGA+AGG 0.605489 3:-98567937 MsG0380017616.01.T01:five_prime_UTR
AGAAGTTGATATGAAAGGAA+GGG 0.607486 3:+98568026 None:intergenic
TTTGGCAGCATTGGTTCACA+AGG 0.608971 3:-98565243 MsG0380017616.01.T01:intron
AGTTTGAAAGTATACTTGTG+AGG 0.609821 3:-98564174 MsG0380017616.01.T01:three_prime_UTR
ATTGGATCTAATGAAAGTGG+AGG 0.613074 3:-98564649 MsG0380017616.01.T01:CDS
ATGGAGATTCCATAGATCGA+AGG 0.627231 3:-98567908 MsG0380017616.01.T01:five_prime_UTR
ACCTTGAATGATAGGCGCAA+CGG 0.631083 3:+98567202 None:intergenic
GGGCTTGACAAGGCATAATG+TGG 0.631155 3:-98564628 MsG0380017616.01.T01:CDS
TAAGAGACATATCTTACCGA+AGG 0.633987 3:-98564431 MsG0380017616.01.T01:CDS
GAAGGAAATGGCTAAATACA+AGG 0.634430 3:-98564413 MsG0380017616.01.T01:CDS
AACGGAATACACAGTCCACA+TGG 0.636947 3:+98564284 None:intergenic
TTGGATCTAATGAAAGTGGA+GGG 0.637148 3:-98564648 MsG0380017616.01.T01:CDS
TGAAAGTGGAGGGCTTGACA+AGG 0.644049 3:-98564638 MsG0380017616.01.T01:CDS
GAGATCTCGATTGAAGATGA+GGG 0.646124 3:-98564231 MsG0380017616.01.T01:three_prime_UTR
CGACGGAGAAACATGAGATG+CGG 0.667323 3:+98567682 None:intergenic
TGGCTTGATACAACACCATG+TGG 0.668237 3:-98564299 MsG0380017616.01.T01:three_prime_UTR
TCTCCGCAAACCACTCTCCG+AGG 0.676397 3:-98565281 MsG0380017616.01.T01:CDS
GTAAGAGCAAGATCCATCGA+CGG 0.708111 3:+98567665 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATAAAAAAGAAGAT+AGG + Chr3:98565146-98565165 None:intergenic 15.0%
!! AATAGAAAAATTACTTTGAT+AGG + Chr3:98564846-98564865 None:intergenic 15.0%
!! GTTTGTATAAATAATTGTTA+GGG - Chr3:98564777-98564796 MsG0380017616.01.T01:intron 15.0%
!! TGTTTGTATAAATAATTGTT+AGG - Chr3:98564776-98564795 MsG0380017616.01.T01:intron 15.0%
!! TTAAATGAAGTTTATTTCAA+TGG - Chr3:98564695-98564714 MsG0380017616.01.T01:CDS 15.0%
!!! AAAATAAAAAGTGTGAATAT+AGG - Chr3:98565275-98565294 MsG0380017616.01.T01:CDS 15.0%
!!! AAATAAAAAGTGTGAATATA+GGG - Chr3:98565276-98565295 MsG0380017616.01.T01:CDS 15.0%
!!! AATTGCTATTTACATAATTA+TGG - Chr3:98565531-98565550 MsG0380017616.01.T01:intron 15.0%
!!! AATTTTACATGAATACATTT+TGG - Chr3:98566434-98566453 MsG0380017616.01.T01:intron 15.0%
!!! TGTGTTACATTATATTTTTT+GGG - Chr3:98565736-98565755 MsG0380017616.01.T01:intron 15.0%
!!! TTGTGTTACATTATATTTTT+TGG - Chr3:98565735-98565754 MsG0380017616.01.T01:intron 15.0%
!! AAAACTGTATTAAGAAAATC+AGG + Chr3:98567457-98567476 None:intergenic 20.0%
!! AAATTGATGAATGTGTTATA+GGG - Chr3:98566520-98566539 MsG0380017616.01.T01:intron 20.0%
!! AATATGCTTGACATATATAT+AGG - Chr3:98567841-98567860 MsG0380017616.01.T01:CDS 20.0%
!! ATTTAAGGAAAAAAAAGATG+AGG - Chr3:98566252-98566271 MsG0380017616.01.T01:intron 20.0%
!! CATTCAAATAATAATCCTTT+AGG - Chr3:98566114-98566133 MsG0380017616.01.T01:intron 20.0%
!! TATAGTATCTAAATATATGC+AGG - Chr3:98566221-98566240 MsG0380017616.01.T01:intron 20.0%
!!! ATTAATTACAGTTTTGAATG+AGG + Chr3:98567680-98567699 None:intergenic 20.0%
!!! CAATTTTCTTATACAAATCA+AGG - Chr3:98564749-98564768 MsG0380017616.01.T01:CDS 20.0%
!!! TGAAAAAGCTTTTTAAAACA+TGG + Chr3:98565995-98566014 None:intergenic 20.0%
!!! TGATTTTCTTAATACAGTTT+TGG - Chr3:98567456-98567475 MsG0380017616.01.T01:intron 20.0%
!!! TTAATTTTAATGTACTCGAT+AGG - Chr3:98566313-98566332 MsG0380017616.01.T01:intron 20.0%
! AACATTATGAGAAGAATGAA+TGG + Chr3:98567351-98567370 None:intergenic 25.0%
! AAGAAAAACTACAAAATCAG+TGG + Chr3:98565320-98565339 None:intergenic 25.0%
! AATATTGGATCTAATGAAAG+TGG - Chr3:98567573-98567592 MsG0380017616.01.T01:intron 25.0%
! AATTGATGAATGTGTTATAG+GGG - Chr3:98566521-98566540 MsG0380017616.01.T01:intron 25.0%
! AATTGTAAGAGAGTAATTTG+AGG - Chr3:98565191-98565210 MsG0380017616.01.T01:intron 25.0%
! AGAAAAACTACAAAATCAGT+GGG + Chr3:98565319-98565338 None:intergenic 25.0%
! ATATTAAGAGTAAATGCATG+TGG + Chr3:98567033-98567052 None:intergenic 25.0%
! ATGAGAAAGATAGAAAATCT+TGG + Chr3:98565716-98565735 None:intergenic 25.0%
! ATGTAATGCATACTAACATA+AGG - Chr3:98567732-98567751 MsG0380017616.01.T01:CDS 25.0%
! CAATGAACATTGTGAAATAA+CGG + Chr3:98567380-98567399 None:intergenic 25.0%
! CTGAGTAAAATATTCTTATG+TGG - Chr3:98567055-98567074 MsG0380017616.01.T01:intron 25.0%
! GAAATTGATGAATGTGTTAT+AGG - Chr3:98566519-98566538 MsG0380017616.01.T01:intron 25.0%
! GAATATAACCTTATACAACA+TGG + Chr3:98567408-98567427 None:intergenic 25.0%
! GATGAGAAATATTGATGTAT+AGG - Chr3:98565948-98565967 MsG0380017616.01.T01:intron 25.0%
! TAAATGTGAGAAAAGCTAAT+CGG - Chr3:98567301-98567320 MsG0380017616.01.T01:intron 25.0%
! TATATCAACTTGAAAAGCTA+GGG + Chr3:98566205-98566224 None:intergenic 25.0%
! TCAGTTCTACTTACTTAAAT+AGG - Chr3:98566813-98566832 MsG0380017616.01.T01:intron 25.0%
! TCTTATGCATTCTATATTTC+TGG + Chr3:98567779-98567798 None:intergenic 25.0%
! TTGGGAATTTGTATACAAAA+TGG - Chr3:98567906-98567925 MsG0380017616.01.T01:five_prime_UTR 25.0%
! TTGTTTATCCATGTTGTATA+AGG - Chr3:98567397-98567416 MsG0380017616.01.T01:intron 25.0%
! TTTAAAAGGATATGGTCTAT+CGG + Chr3:98566759-98566778 None:intergenic 25.0%
! TTTACTACTAATTCATTTGC+AGG - Chr3:98564657-98564676 MsG0380017616.01.T01:CDS 25.0%
!! AAGACCATGAAACTTTTTAA+AGG + Chr3:98565677-98565696 None:intergenic 25.0%
!! ACCATATCCTTTTAAATTAG+TGG - Chr3:98566763-98566782 MsG0380017616.01.T01:intron 25.0%
!! CAATTCAGGAATTTTCATAT+TGG - Chr3:98564814-98564833 MsG0380017616.01.T01:intron 25.0%
!! CCATATCCTTTTAAATTAGT+GGG - Chr3:98566764-98566783 MsG0380017616.01.T01:intron 25.0%
!! TATATCGTTATTTCATGCTT+TGG - Chr3:98566726-98566745 MsG0380017616.01.T01:intron 25.0%
!! TTGTCCTTTAAAAAGTTTCA+TGG - Chr3:98565670-98565689 MsG0380017616.01.T01:intron 25.0%
!!! AACTTTTTAAAGGACAACAA+CGG + Chr3:98565667-98565686 None:intergenic 25.0%
!!! GCTAATCAACTAGTTTTATT+TGG - Chr3:98566786-98566805 MsG0380017616.01.T01:intron 25.0%
!!! TAGATTTGTTTTGGAAGAAA+GGG + Chr3:98564176-98564195 None:intergenic 25.0%
!!! TCATAACTCTAAAACAGAAT+GGG + Chr3:98565562-98565581 None:intergenic 25.0%
!!! TGAGGTATTGAAATAGTTTT+TGG + Chr3:98567662-98567681 None:intergenic 25.0%
!!! TTAATACAGTTTTGGTACTT+TGG - Chr3:98567464-98567483 MsG0380017616.01.T01:intron 25.0%
!!! TTCATAACTCTAAAACAGAA+TGG + Chr3:98565563-98565582 None:intergenic 25.0%
!!! TTGTTTTGCTTTTTTAAGCT+TGG - Chr3:98566909-98566928 MsG0380017616.01.T01:intron 25.0%
!!! TTTGATTTGTTTGTCAATTC+AGG - Chr3:98564800-98564819 MsG0380017616.01.T01:intron 25.0%
AAAAAAAGATGAGGATGATG+AGG - Chr3:98566261-98566280 MsG0380017616.01.T01:intron 30.0%
ACAACATCTGCAAATAAAGT+AGG - Chr3:98567266-98567285 MsG0380017616.01.T01:intron 30.0%
ACCATCATAAAAATGCCTAA+AGG + Chr3:98566132-98566151 None:intergenic 30.0%
AGTAGTTGTAACAAACCTTT+AGG - Chr3:98566153-98566172 MsG0380017616.01.T01:intron 30.0%
AGTGAGAAGACAAAAAATGT+TGG + Chr3:98564373-98564392 None:intergenic 30.0%
ATCAGAACCAAATCTGAAAA+AGG - Chr3:98564477-98564496 MsG0380017616.01.T01:intron 30.0%
ATCATTAGCGAACTGAATAT+CGG - Chr3:98564256-98564275 MsG0380017616.01.T01:three_prime_UTR 30.0%
ATCTAAACATCATGCCATAA+CGG + Chr3:98567962-98567981 None:intergenic 30.0%
ATCTCTTGAACCTTGTAAAT+GGG - Chr3:98567883-98567902 MsG0380017616.01.T01:exon 30.0%
ATTAGATCCAATATTCGAGA+AGG + Chr3:98567568-98567587 None:intergenic 30.0%
ATTCATGATTGATCTGAAGA+AGG + Chr3:98564238-98564257 None:intergenic 30.0%
ATTGTAAAACCTCATAGCTA+CGG + Chr3:98566350-98566369 None:intergenic 30.0%
CCAATGGAATACTTGAAAAT+AGG - Chr3:98566045-98566064 MsG0380017616.01.T01:intron 30.0%
CCCACTAATTTAAAAGGATA+TGG + Chr3:98566767-98566786 None:intergenic 30.0%
CTATATCAACTTGAAAAGCT+AGG + Chr3:98566206-98566225 None:intergenic 30.0%
CTCATCAACCAAATATAACT+CGG - Chr3:98564887-98564906 MsG0380017616.01.T01:intron 30.0%
CTGATTATGCAAATTATCCT+TGG + Chr3:98565590-98565609 None:intergenic 30.0%
GAACATGACATGGAAAATAT+GGG - Chr3:98566543-98566562 MsG0380017616.01.T01:intron 30.0%
GATTTGATTCTAGCCATAAA+AGG - Chr3:98565855-98565874 MsG0380017616.01.T01:intron 30.0%
TATCTCTTGAACCTTGTAAA+TGG - Chr3:98567882-98567901 MsG0380017616.01.T01:CDS 30.0%
TATTATCATCAACGGTGATA+TGG - Chr3:98564917-98564936 MsG0380017616.01.T01:intron 30.0%
TCAGAACCAAATCTGAAAAA+GGG - Chr3:98564478-98564497 MsG0380017616.01.T01:intron 30.0%
TTAGAGTTATGAATGTACCA+AGG - Chr3:98565570-98565589 MsG0380017616.01.T01:intron 30.0%
TTCATGATTGATCTGAAGAA+GGG + Chr3:98564237-98564256 None:intergenic 30.0%
TTGTATTTAGCCATTTCCTT+CGG + Chr3:98567813-98567832 None:intergenic 30.0%
TTTAGTGCTAATGATCATCT+TGG - Chr3:98565815-98565834 MsG0380017616.01.T01:intron 30.0%
! ACTCATAATTGCTCCTTTTA+TGG + Chr3:98565871-98565890 None:intergenic 30.0%
! AGGAATTTGGATAAAGTGTT+CGG + Chr3:98565789-98565808 None:intergenic 30.0%
! AGTTTGAAAGTATACTTGTG+AGG - Chr3:98568051-98568070 MsG0380017616.01.T01:five_prime_UTR 30.0%
! GAATCCATATGAAAAGGTAT+AGG + Chr3:98565464-98565483 None:intergenic 30.0%
! GATTAGCCCACTAATTTAAA+AGG + Chr3:98566773-98566792 None:intergenic 30.0%
! GTTTGAAAGTATACTTGTGA+GGG - Chr3:98568052-98568071 MsG0380017616.01.T01:five_prime_UTR 30.0%
! TACCTTTTCATATGGATTCT+TGG - Chr3:98565465-98565484 MsG0380017616.01.T01:intron 30.0%
! TCCTTTAGGCATTTTTATGA+TGG - Chr3:98566128-98566147 MsG0380017616.01.T01:intron 30.0%
! TTCTCCTATACCTTTTCATA+TGG - Chr3:98565457-98565476 MsG0380017616.01.T01:intron 30.0%
! TTGTTTAGAACCTTCACATT+TGG + Chr3:98567230-98567249 None:intergenic 30.0%
!! AAATAGTTTTTGGAAACCGT+GGG + Chr3:98567652-98567671 None:intergenic 30.0%
!! AGAAGTTGATATGAAAGGAA+GGG + Chr3:98564202-98564221 None:intergenic 30.0%
!! AGTTATATTTGGTTGATGAG+AGG + Chr3:98564887-98564906 None:intergenic 30.0%
!! ATCAATTTCAAGTTCCATAG+AGG + Chr3:98566508-98566527 None:intergenic 30.0%
!! TAGAAGTTGATATGAAAGGA+AGG + Chr3:98564203-98564222 None:intergenic 30.0%
!! TCAATTTCAAGTTCCATAGA+GGG + Chr3:98566507-98566526 None:intergenic 30.0%
!! TGAGTAGAAGTTGATATGAA+AGG + Chr3:98564207-98564226 None:intergenic 30.0%
!!! AGAGTTTTTTCATGGTAACA+AGG - Chr3:98565234-98565253 MsG0380017616.01.T01:intron 30.0%
!!! CCTATTTTCAAGTATTCCAT+TGG + Chr3:98566048-98566067 None:intergenic 30.0%
!!! CGATGATAAGAGTTTTTTCA+TGG - Chr3:98565226-98565245 MsG0380017616.01.T01:intron 30.0%
!!! CTAGATTTGTTTTGGAAGAA+AGG + Chr3:98564177-98564196 None:intergenic 30.0%
!!! GAGTTTTTTCATGGTAACAA+GGG - Chr3:98565235-98565254 MsG0380017616.01.T01:intron 30.0%
!!! TTTGTTTTGAATCTGCAAGA+TGG + Chr3:98567157-98567176 None:intergenic 30.0%
AAACAAAGCAGAGAGTAAAG+AGG + Chr3:98566895-98566914 None:intergenic 35.0%
AAATTCCCAACCCATTTACA+AGG + Chr3:98567896-98567915 None:intergenic 35.0%
AACCATATATTTAGCGTGTC+AGG - Chr3:98565507-98565526 MsG0380017616.01.T01:intron 35.0%
ACACGCTAAATATATGGTTG+TGG + Chr3:98565506-98565525 None:intergenic 35.0%
ACATATCTTACCGAAGGAAA+TGG - Chr3:98567800-98567819 MsG0380017616.01.T01:CDS 35.0%
ACATGATAAGAGTGATGAGA+TGG + Chr3:98568021-98568040 None:intergenic 35.0%
AGAATATGCCTGTAGAATGA+AGG + Chr3:98565441-98565460 None:intergenic 35.0%
AGGACAAGCTCAGAAATATT+TGG - Chr3:98566964-98566983 MsG0380017616.01.T01:intron 35.0%
ATCAACCAAATATAACTCGG+CGG - Chr3:98564890-98564909 MsG0380017616.01.T01:intron 35.0%
ATGCAGGCATCATACATTTA+AGG - Chr3:98566237-98566256 MsG0380017616.01.T01:intron 35.0%
ATTGGATCTAATGAAAGTGG+AGG - Chr3:98567576-98567595 MsG0380017616.01.T01:intron 35.0%
CAAAAAATTTGTGAAGGCAG+TGG - Chr3:98567516-98567535 MsG0380017616.01.T01:intron 35.0%
CACTAAATTGCACAGGAATT+TGG + Chr3:98565802-98565821 None:intergenic 35.0%
CATAGATCGAAGGTTATAGA+TGG - Chr3:98564327-98564346 MsG0380017616.01.T01:three_prime_UTR 35.0%
CATCTATAACCTTCGATCTA+TGG + Chr3:98564329-98564348 None:intergenic 35.0%
CTAAATATATGGTTGTGGCT+TGG + Chr3:98565501-98565520 None:intergenic 35.0%
CTTATGTGGTTAACTCAAAC+AGG - Chr3:98567069-98567088 MsG0380017616.01.T01:intron 35.0%
GAAGGAAATGGCTAAATACA+AGG - Chr3:98567812-98567831 MsG0380017616.01.T01:CDS 35.0%
GCTGCACAAAAAATTTGTGA+AGG - Chr3:98567510-98567529 MsG0380017616.01.T01:intron 35.0%
GGAACATGACATGGAAAATA+TGG - Chr3:98566542-98566561 MsG0380017616.01.T01:intron 35.0%
GGTAGATTATAACCTGAAGA+TGG + Chr3:98567627-98567646 None:intergenic 35.0%
TAAGAGACATATCTTACCGA+AGG - Chr3:98567794-98567813 MsG0380017616.01.T01:CDS 35.0%
TAATGACATTGACACGAACT+GGG + Chr3:98564429-98564448 None:intergenic 35.0%
TACCTGACACGCTAAATATA+TGG + Chr3:98565512-98565531 None:intergenic 35.0%
TATCTTTGTTCATCCCTCTA+TGG - Chr3:98566491-98566510 MsG0380017616.01.T01:intron 35.0%
TCAGAAATATTTGGCAGCAT+TGG - Chr3:98566973-98566992 MsG0380017616.01.T01:intron 35.0%
TCATTAGCACTAAATTGCAC+AGG + Chr3:98565809-98565828 None:intergenic 35.0%
TGCCAAGAATCCATATGAAA+AGG + Chr3:98565470-98565489 None:intergenic 35.0%
TTACTGCTATGCACTTATCA+TGG + Chr3:98566669-98566688 None:intergenic 35.0%
TTCATTAACTGTTAGCAGCA+AGG + Chr3:98566381-98566400 None:intergenic 35.0%
TTGGATCTAATGAAAGTGGA+GGG - Chr3:98567577-98567596 MsG0380017616.01.T01:intron 35.0%
! AATATTTCTGAGCTTGTCCT+CGG + Chr3:98566964-98566983 None:intergenic 35.0%
! AATCTGAAAAAGGGTACGTT+TGG - Chr3:98564487-98564506 MsG0380017616.01.T01:intron 35.0%
! AGTGCATAGCAGTAAGATTT+TGG - Chr3:98566674-98566693 MsG0380017616.01.T01:intron 35.0%
! ATGGAAGCTTTGATCAGTTA+TGG - Chr3:98564397-98564416 MsG0380017616.01.T01:CDS 35.0%
! ATTGATGAAAGCATGCTGAT+AGG + Chr3:98565903-98565922 None:intergenic 35.0%
! ATTTCAATGGTAGCTTGCAA+TGG - Chr3:98564708-98564727 MsG0380017616.01.T01:CDS 35.0%
! TGGAAGCTTTGATCAGTTAT+GGG - Chr3:98564398-98564417 MsG0380017616.01.T01:CDS 35.0%
! TTGAACCTTGTAAATGGGTT+GGG - Chr3:98567888-98567907 MsG0380017616.01.T01:exon 35.0%
! TTTTGTCTTCTCACTGTACA+TGG - Chr3:98564378-98564397 MsG0380017616.01.T01:exon 35.0%
!! ACATTTTGGTGATTATGCGA+GGG - Chr3:98566448-98566467 MsG0380017616.01.T01:intron 35.0%
!! GAAATAGTTTTTGGAAACCG+TGG + Chr3:98567653-98567672 None:intergenic 35.0%
!! TACATTTTGGTGATTATGCG+AGG - Chr3:98566447-98566466 MsG0380017616.01.T01:intron 35.0%
!!! AACGTACCCTTTTTCAGATT+TGG + Chr3:98564487-98564506 None:intergenic 35.0%
!!! ACAAATTTTTTGTGCAGCTC+TGG + Chr3:98567508-98567527 None:intergenic 35.0%
!!! GAAGGGTTCTAGATTTGTTT+TGG + Chr3:98564185-98564204 None:intergenic 35.0%
AACAACCTTAGAGCTCATAG+AGG + Chr3:98565097-98565116 None:intergenic 40.0%
AATGTTGGATCTACGATCCA+TGG + Chr3:98564358-98564377 None:intergenic 40.0%
ACATCAGGACCTTGAATGAT+AGG + Chr3:98565034-98565053 None:intergenic 40.0%
ACCACAGTTACCAAATGTGA+AGG - Chr3:98567217-98567236 MsG0380017616.01.T01:intron 40.0%
ACCTTTAGGCTATCTGACAT+AGG - Chr3:98566167-98566186 MsG0380017616.01.T01:intron 40.0%
ATGGACTTAGAGTCGACATA+TGG - Chr3:98564936-98564955 MsG0380017616.01.T01:intron 40.0%
ATGGAGATTCCATAGATCGA+AGG - Chr3:98564317-98564336 MsG0380017616.01.T01:three_prime_UTR 40.0%
CAGCATGCTTTCATCAATGT+AGG - Chr3:98565905-98565924 MsG0380017616.01.T01:intron 40.0%
CATCAACTCCTTCATTCTAC+AGG - Chr3:98565430-98565449 MsG0380017616.01.T01:intron 40.0%
CCTCTCACACTTATAAGTGT+CGG + Chr3:98567191-98567210 None:intergenic 40.0%
CGCTATTCCTTCTCGAATAT+TGG - Chr3:98567558-98567577 MsG0380017616.01.T01:intron 40.0%
CTTGAACCTTGTAAATGGGT+TGG - Chr3:98567887-98567906 MsG0380017616.01.T01:exon 40.0%
GAGATCTCGATTGAAGATGA+GGG - Chr3:98567994-98568013 MsG0380017616.01.T01:five_prime_UTR 40.0%
GCAGACTCACTATCTAACAA+AGG + Chr3:98565124-98565143 None:intergenic 40.0%
GCATAATCAGTTTGAGTCTG+TGG - Chr3:98565600-98565619 MsG0380017616.01.T01:intron 40.0%
GCGCGCATCAACAATTAAAA+TGG + Chr3:98566869-98566888 None:intergenic 40.0%
GCGGTGACTATTATCATCAA+CGG - Chr3:98564909-98564928 MsG0380017616.01.T01:intron 40.0%
GCTGATACGACTATCAATCA+GGG - Chr3:98564987-98565006 MsG0380017616.01.T01:CDS 40.0%
GGTTATAATCTACCTTCCCA+CGG - Chr3:98567633-98567652 MsG0380017616.01.T01:CDS 40.0%
GGTTATAGATGGAGATTCCA+TGG - Chr3:98564338-98564357 MsG0380017616.01.T01:three_prime_UTR 40.0%
GTAATGACATTGACACGAAC+TGG + Chr3:98564430-98564449 None:intergenic 40.0%
TCCTATGTCAGATAGCCTAA+AGG + Chr3:98566171-98566190 None:intergenic 40.0%
TGAATCACTGAAACCTGTCA+AGG - Chr3:98567119-98567138 MsG0380017616.01.T01:intron 40.0%
TGAGATCTCGATTGAAGATG+AGG - Chr3:98567993-98568012 MsG0380017616.01.T01:five_prime_UTR 40.0%
TGCTGATACGACTATCAATC+AGG - Chr3:98564986-98565005 MsG0380017616.01.T01:CDS 40.0%
TGTACTCGATAGGCAGTTAT+AGG - Chr3:98566323-98566342 MsG0380017616.01.T01:intron 40.0%
TGTTATAGGGGAACATGACA+TGG - Chr3:98566533-98566552 MsG0380017616.01.T01:intron 40.0%
! ACCTTCACATTTGGTAACTG+TGG + Chr3:98567221-98567240 None:intergenic 40.0%
!! AGTTTTGGTACTTTGGTCTC+AGG - Chr3:98567471-98567490 MsG0380017616.01.T01:intron 40.0%
!! ATTTTGGTGATTATGCGAGG+GGG - Chr3:98566450-98566469 MsG0380017616.01.T01:intron 40.0%
!! CATTTTGGTGATTATGCGAG+GGG - Chr3:98566449-98566468 MsG0380017616.01.T01:intron 40.0%
!! CTTGCTGCAAGTTTTGTAGT+CGG - Chr3:98566594-98566613 MsG0380017616.01.T01:intron 40.0%
!! CTTTTGAGAGAGAGAGAGAA+GGG + Chr3:98564521-98564540 None:intergenic 40.0%
!! GTTTTGAATCTGCAAGATGG+AGG + Chr3:98567154-98567173 None:intergenic 40.0%
!!! CTTTTTTAAGCTTGGAGCAG+TGG - Chr3:98566917-98566936 MsG0380017616.01.T01:intron 40.0%
!!! GTTTTGGAAGAAAGGGTTTG+AGG + Chr3:98564169-98564188 None:intergenic 40.0%
AACGGAATACACAGTCCACA+TGG + Chr3:98567944-98567963 None:intergenic 45.0%
ACCAAATATCCGAGCCAACT+CGG + Chr3:98564585-98564604 None:intergenic 45.0%
ACCTTGAATGATAGGCGCAA+CGG + Chr3:98565026-98565045 None:intergenic 45.0%
AGAGTCGACATATGGTGTGA+AGG - Chr3:98564944-98564963 MsG0380017616.01.T01:CDS 45.0%
AGTCACCGCCGAGTTATATT+TGG + Chr3:98564898-98564917 None:intergenic 45.0%
ATCTCATGTTTCTCCGTCGA+TGG - Chr3:98564547-98564566 MsG0380017616.01.T01:intron 45.0%
CAAGACCTCTATGAGCTCTA+AGG - Chr3:98565089-98565108 MsG0380017616.01.T01:intron 45.0%
CACAGATCGAAGGTTAGAGA+TGG - Chr3:98564298-98564317 MsG0380017616.01.T01:three_prime_UTR 45.0%
CAGGTTTCAGTGATTCAGAC+AGG + Chr3:98567116-98567135 None:intergenic 45.0%
CCGACACTTATAAGTGTGAG+AGG - Chr3:98567188-98567207 MsG0380017616.01.T01:CDS 45.0%
CTCAAACAGGCATTCAATGC+TGG - Chr3:98567082-98567101 MsG0380017616.01.T01:intron 45.0%
GTAAGAGCAAGATCCATCGA+CGG + Chr3:98564563-98564582 None:intergenic 45.0%
GTTATAGGACCGTAGCTATG+AGG - Chr3:98566338-98566357 MsG0380017616.01.T01:intron 45.0%
TAATGTGGCAAGCCATCTTC+AGG - Chr3:98567612-98567631 MsG0380017616.01.T01:intron 45.0%
TACTTTGGTCTCAGGTAGAC+TGG - Chr3:98567479-98567498 MsG0380017616.01.T01:intron 45.0%
TAGAGGTCTTGCACTCTTAC+TGG + Chr3:98565080-98565099 None:intergenic 45.0%
TGGCTTGATACAACACCATG+TGG - Chr3:98567926-98567945 MsG0380017616.01.T01:five_prime_UTR 45.0%
! GTGGACTGTGTATTCCGTTA+TGG - Chr3:98567945-98567964 MsG0380017616.01.T01:five_prime_UTR 45.0%
! TTTTAAGCTTGGAGCAGTGG+AGG - Chr3:98566920-98566939 MsG0380017616.01.T01:intron 45.0%
!! AGACAAAAGAAGTGTCTGCG+TGG - Chr3:98566019-98566038 MsG0380017616.01.T01:intron 45.0%
!! AGTTTTTGGAAACCGTGGGA+AGG + Chr3:98567648-98567667 None:intergenic 45.0%
!! GCTTTTGAGAGAGAGAGAGA+AGG + Chr3:98564522-98564541 None:intergenic 45.0%
!! TTTGGCAGCATTGGTTCACA+AGG - Chr3:98566982-98567001 MsG0380017616.01.T01:intron 45.0%
!!! AGGGGGAAGCATGCTTTTTT+AGG - Chr3:98566467-98566486 MsG0380017616.01.T01:intron 45.0%
AGCGAACTGAATATCGGCCA+AGG - Chr3:98564262-98564281 MsG0380017616.01.T01:three_prime_UTR 50.0%
CGACGGAGAAACATGAGATG+CGG + Chr3:98564546-98564565 None:intergenic 50.0%
GAGGCTACAGATTCCTTGAC+AGG + Chr3:98567135-98567154 None:intergenic 50.0%
GGATCTTGCTCTTACCGAGT+TGG - Chr3:98564568-98564587 MsG0380017616.01.T01:intron 50.0%
GGGCTTGACAAGGCATAATG+TGG - Chr3:98567597-98567616 MsG0380017616.01.T01:intron 50.0%
GTCGACATATGGTGTGAAGG+CGG - Chr3:98564947-98564966 MsG0380017616.01.T01:CDS 50.0%
TCCGTTGCGCCTATCATTCA+AGG - Chr3:98565022-98565041 MsG0380017616.01.T01:intron 50.0%
TGAAAGTGGAGGGCTTGACA+AGG - Chr3:98567587-98567606 MsG0380017616.01.T01:intron 50.0%
TGAGTCTGAGCAACGACATC+AGG + Chr3:98565049-98565068 None:intergenic 50.0%
! GGAAGAAAGGGTTTGAGGCA+GGG + Chr3:98564164-98564183 None:intergenic 50.0%
! GTTTGAGGCAGGGAAGGAAA+GGG + Chr3:98564154-98564173 None:intergenic 50.0%
! TGGAAGAAAGGGTTTGAGGC+AGG + Chr3:98564165-98564184 None:intergenic 50.0%
! TTGCTCTTACCGAGTTGGCT+CGG - Chr3:98564573-98564592 MsG0380017616.01.T01:intron 50.0%
!! ACCGAGTTGGCTCGGATATT+TGG - Chr3:98564581-98564600 MsG0380017616.01.T01:intron 50.0%
!! GTTGGCTCGGATATTTGGTG+TGG - Chr3:98564586-98564605 MsG0380017616.01.T01:intron 50.0%
ACACGACGAGCACAGATCGA+AGG - Chr3:98564288-98564307 MsG0380017616.01.T01:three_prime_UTR 55.0%
GTGAAGGCAGTGGAGCAACT+AGG - Chr3:98567526-98567545 MsG0380017616.01.T01:intron 55.0%
TGTCCTCGGAGAGTGGTTTG+CGG + Chr3:98566950-98566969 None:intergenic 55.0%
TGTGCTCGTCGTGTTTGCCT+TGG + Chr3:98564282-98564301 None:intergenic 55.0%
! GAAAGGGTTTGAGGCAGGGA+AGG + Chr3:98564160-98564179 None:intergenic 55.0%
! GGTTTGAGGCAGGGAAGGAA+AGG + Chr3:98564155-98564174 None:intergenic 55.0%
AGTGTCTGCGTGGCTGCCAA+TGG - Chr3:98566029-98566048 MsG0380017616.01.T01:intron 60.0%
CTGAGCTTGTCCTCGGAGAG+TGG + Chr3:98566957-98566976 None:intergenic 60.0%
TCTCCGCAAACCACTCTCCG+AGG - Chr3:98566944-98566963 MsG0380017616.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98564129 98568118 98564129 ID=MsG0380017616.01;Name=MsG0380017616.01
Chr3 mRNA 98564129 98568118 98564129 ID=MsG0380017616.01.T01;Parent=MsG0380017616.01;Name=MsG0380017616.01.T01;_AED=0.29;_eAED=0.34;_QI=217|0.33|0.42|1|1|1|7|267|246
Chr3 exon 98564129 98564467 98564129 ID=MsG0380017616.01.T01:exon:6486;Parent=MsG0380017616.01.T01
Chr3 exon 98564614 98564774 98564614 ID=MsG0380017616.01.T01:exon:6485;Parent=MsG0380017616.01.T01
Chr3 exon 98564942 98565023 98564942 ID=MsG0380017616.01.T01:exon:6484;Parent=MsG0380017616.01.T01
Chr3 exon 98565142 98565156 98565142 ID=MsG0380017616.01.T01:exon:6483;Parent=MsG0380017616.01.T01
Chr3 exon 98565244 98565320 98565244 ID=MsG0380017616.01.T01:exon:6482;Parent=MsG0380017616.01.T01
Chr3 exon 98567168 98567228 98567168 ID=MsG0380017616.01.T01:exon:6481;Parent=MsG0380017616.01.T01
Chr3 exon 98567629 98568118 98567629 ID=MsG0380017616.01.T01:exon:6480;Parent=MsG0380017616.01.T01
Chr3 five_prime_UTR 98567902 98568118 98567902 ID=MsG0380017616.01.T01:five_prime_utr;Parent=MsG0380017616.01.T01
Chr3 CDS 98567629 98567901 98567629 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 CDS 98567168 98567228 98567168 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 CDS 98565244 98565320 98565244 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 CDS 98565142 98565156 98565142 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 CDS 98564942 98565023 98564942 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 CDS 98564614 98564774 98564614 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 CDS 98564396 98564467 98564396 ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3 three_prime_UTR 98564129 98564395 98564129 ID=MsG0380017616.01.T01:three_prime_utr;Parent=MsG0380017616.01.T01
Gene Sequence

>MsG0380017616.01.T01

ATGGAGATTCCATGGATCGTAGATCCAACATTTTTTGTCTTCTCACTGTACATGGAAGCTTTGATCAGTTATGGGATCGACCCAGTTCGTGTCAATGTCATTACAAAGCAGCGATCTTGTTTTTCGTTTGAATCAGAACCAAATCTGAAAAAGGGTACGTTTGGATTTCAAACCCTTCTCTCTCTCTCTCAAAAGCTCCGCATCTCATGTTTCTCCGTCGATGGATCTTGCTCTTACCGAGTTGGCTCGGATATTTGGTGTGGACAGTGCAACCGTTCCGTTGCGCCTATCATTCAAGGTCCTGATGTCGTTGCTCAGACTCAATCTAGAACCACTTGGAGCAGTGGAGGTTCTCCGCAAACCACTCTCCGAGGACAAGCTCAGAAATATTTGGCAGCATTGGTTCACAAGGCATTCAATGCTGGTTTACCAAATGTGAAGGTTCTAAACAATGATAGTGAAAGTAATACAACATCTGCAAATAAAGTAGGTATTCGCAGTCATAAATTTTTGGTACTTTGGTCTCAGGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTAATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTACCGAAGGAAATGGCTAAATACAAGGTAGTTAAATATGCTTGA
Protein sequence

>MsG0380017616.01.T01

MEIPWIVDPTFFVFSLYMEALISYGIDPVRVNVITKQRSCFSFESEPNLKKGTFGFQTLLSLSQKLRISCFSVDGSCSYRVGSDIWCGQCNRSVAPIIQGPDVVAQTQSRTTWSSGGSPQTTLRGQAQKYLAALVHKAFNAGLPNVKVLNNDSESNTTSANKVGIRSHKFLVLWSQVDWTPELHKKFVKAVEQLGINHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKEMAKYKVVKYA*