AlfalfaGEDB | MsG0380017616.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017616.01

KEGG: -
GO: GO:0003677
PFAM: PF00249

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017616.01.T01	KEH31562.1	82.653	98	12	2	143	236	296	392	2.70E-41	159

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017616.01.T01	Q6LA43	47.458	118	49	2	127	244	262	366	3.10E-25	107

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017616.01.T01	A0A072UPE2	82.653	98	12	2	143	236	296	392	1.29e-41	159

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0380017616.01.T01	TF	GARP-G2-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017616.01.T01	MTR_4g098870	82.653	98	12	2	143	236	296	392	3.27e-45	159
MsG0380017616.01.T01	MTR_4g098870	82.653	98	12	2	143	236	276	372	3.28e-45	159
MsG0380017616.01.T01	MTR_4g098870	82.653	98	12	2	143	236	296	392	3.52e-45	159
MsG0380017616.01.T01	MTR_4g098870	82.653	98	12	2	143	236	276	372	3.65e-45	159
MsG0380017616.01.T01	MTR_4g098870	82.653	98	12	2	143	236	315	411	5.08e-45	159
MsG0380017616.01.T01	MTR_5g014040	86.207	58	8	0	176	233	313	370	5.93e-27	108
MsG0380017616.01.T01	MTR_5g014040	79.365	63	8	1	176	233	273	335	8.05e-25	102
MsG0380017616.01.T01	MTR_5g014040	79.365	63	8	1	176	233	313	375	9.03e-25	102
MsG0380017616.01.T01	MTR_4g078810	65.574	61	21	0	176	236	160	220	2.56e-24	100
MsG0380017616.01.T01	MTR_2g090675	65.574	61	21	0	176	236	163	223	9.33e-24	99.0

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	2.96e-26	106
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	2.96e-26	106
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	2.96e-26	106
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	2.96e-26	106
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	2.96e-26	106
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	2.96e-26	106
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	3.16e-26	107
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	3.16e-26	107
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	3.16e-26	107
MsG0380017616.01.T01	AT4G18020	47.458	118	49	2	127	244	262	366	3.16e-26	107

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Find 80 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCCCAACCCATTTACA+AGG	0.542035	3:+98564332	None:intergenic
AACGGAATACACAGTCCACA+TGG	0.636947	3:+98564284	None:intergenic
AATATGCTTGACATATATAT+AGG	0.459459	3:-98564384	MsG0380017616.01.T01:exon
AATATTGGATCTAATGAAAG+TGG	0.519493	3:-98564652	MsG0380017616.01.T01:CDS
AATATTTCTGAGCTTGTCCT+CGG	0.546887	3:+98565264	None:intergenic
AATGTTGGATCTACGATCCA+TGG	0.500572	3:+98567870	None:intergenic
ACAACATCTGCAAATAAAGT+AGG	0.528162	3:-98564959	MsG0380017616.01.T01:CDS
ACACGACGAGCACAGATCGA+AGG	0.605489	3:-98567937	MsG0380017616.01.T01:five_prime_UTR
ACATATCTTACCGAAGGAAA+TGG	0.458461	3:-98564425	MsG0380017616.01.T01:CDS
ACATCAGGACCTTGAATGAT+AGG	0.448658	3:+98567194	None:intergenic

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGATGAGGATGATG+AGG	-	Chr3:98566261-98566280	MsG0380017616.01.T01:intron	30.0%
ACAACATCTGCAAATAAAGT+AGG	-	Chr3:98567266-98567285	MsG0380017616.01.T01:intron	30.0%
ACCATCATAAAAATGCCTAA+AGG	+	Chr3:98566132-98566151	None:intergenic	30.0%
AGTAGTTGTAACAAACCTTT+AGG	-	Chr3:98566153-98566172	MsG0380017616.01.T01:intron	30.0%
AGTGAGAAGACAAAAAATGT+TGG	+	Chr3:98564373-98564392	None:intergenic	30.0%
ATCAGAACCAAATCTGAAAA+AGG	-	Chr3:98564477-98564496	MsG0380017616.01.T01:intron	30.0%
ATCATTAGCGAACTGAATAT+CGG	-	Chr3:98564256-98564275	MsG0380017616.01.T01:three_prime_UTR	30.0%
ATCTAAACATCATGCCATAA+CGG	+	Chr3:98567962-98567981	None:intergenic	30.0%
ATCTCTTGAACCTTGTAAAT+GGG	-	Chr3:98567883-98567902	MsG0380017616.01.T01:exon	30.0%
ATTAGATCCAATATTCGAGA+AGG	+	Chr3:98567568-98567587	None:intergenic	30.0%

Showing 1 to 10 of 238 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	98564129	98568118	98564129	ID=MsG0380017616.01;Name=MsG0380017616.01
Chr3	mRNA	98564129	98568118	98564129	ID=MsG0380017616.01.T01;Parent=MsG0380017616.01;Name=MsG0380017616.01.T01;_AED=0.29;_eAED=0.34;_QI=217\|0.33\|0.42\|1\|1\|1\|7\|267\|246
Chr3	exon	98564129	98564467	98564129	ID=MsG0380017616.01.T01:exon:6486;Parent=MsG0380017616.01.T01
Chr3	exon	98564614	98564774	98564614	ID=MsG0380017616.01.T01:exon:6485;Parent=MsG0380017616.01.T01
Chr3	exon	98564942	98565023	98564942	ID=MsG0380017616.01.T01:exon:6484;Parent=MsG0380017616.01.T01
Chr3	exon	98565142	98565156	98565142	ID=MsG0380017616.01.T01:exon:6483;Parent=MsG0380017616.01.T01
Chr3	exon	98565244	98565320	98565244	ID=MsG0380017616.01.T01:exon:6482;Parent=MsG0380017616.01.T01
Chr3	exon	98567168	98567228	98567168	ID=MsG0380017616.01.T01:exon:6481;Parent=MsG0380017616.01.T01
Chr3	exon	98567629	98568118	98567629	ID=MsG0380017616.01.T01:exon:6480;Parent=MsG0380017616.01.T01
Chr3	five_prime_UTR	98567902	98568118	98567902	ID=MsG0380017616.01.T01:five_prime_utr;Parent=MsG0380017616.01.T01
Chr3	CDS	98567629	98567901	98567629	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	CDS	98567168	98567228	98567168	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	CDS	98565244	98565320	98565244	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	CDS	98565142	98565156	98565142	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	CDS	98564942	98565023	98564942	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	CDS	98564614	98564774	98564614	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	CDS	98564396	98564467	98564396	ID=MsG0380017616.01.T01:cds;Parent=MsG0380017616.01.T01
Chr3	three_prime_UTR	98564129	98564395	98564129	ID=MsG0380017616.01.T01:three_prime_utr;Parent=MsG0380017616.01.T01

Gene Sequence

>MsG0380017616.01.T01

ATGGAGATTCCATGGATCGTAGATCCAACATTTTTTGTCTTCTCACTGTACATGGAAGCTTTGATCAGTTATGGGATCGACCCAGTTCGTGTCAATGTCATTACAAAGCAGCGATCTTGTTTTTCGTTTGAATCAGAACCAAATCTGAAAAAGGGTACGTTTGGATTTCAAACCCTTCTCTCTCTCTCTCAAAAGCTCCGCATCTCATGTTTCTCCGTCGATGGATCTTGCTCTTACCGAGTTGGCTCGGATATTTGGTGTGGACAGTGCAACCGTTCCGTTGCGCCTATCATTCAAGGTCCTGATGTCGTTGCTCAGACTCAATCTAGAACCACTTGGAGCAGTGGAGGTTCTCCGCAAACCACTCTCCGAGGACAAGCTCAGAAATATTTGGCAGCATTGGTTCACAAGGCATTCAATGCTGGTTTACCAAATGTGAAGGTTCTAAACAATGATAGTGAAAGTAATACAACATCTGCAAATAAAGTAGGTATTCGCAGTCATAAATTTTTGGTACTTTGGTCTCAGGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTAATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTACCGAAGGAAATGGCTAAATACAAGGTAGTTAAATATGCTTGA

Protein sequence

>MsG0380017616.01.T01

MEIPWIVDPTFFVFSLYMEALISYGIDPVRVNVITKQRSCFSFESEPNLKKGTFGFQTLLSLSQKLRISCFSVDGSCSYRVGSDIWCGQCNRSVAPIIQGPDVVAQTQSRTTWSSGGSPQTTLRGQAQKYLAALVHKAFNAGLPNVKVLNNDSESNTTSANKVGIRSHKFLVLWSQVDWTPELHKKFVKAVEQLGINHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKEMAKYKVVKYA*