AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017850.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017850.01.T01 MTR_3g113800 74.499 349 20 7 1 285 1 344 2.71e-169 474
MsG0380017850.01.T01 MTR_3g113800 77.863 262 16 6 1 225 1 257 1.89e-129 371
MsG0380017850.01.T01 MTR_1g105110 35.542 332 135 11 53 309 92 419 4.29e-40 146
MsG0380017850.01.T01 MTR_4g052000 33.648 318 131 10 69 309 100 414 2.91e-37 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017850.01.T01 AT1G47870 40.860 279 116 9 70 309 122 390 2.43e-49 169
MsG0380017850.01.T01 AT1G47870 40.860 279 116 9 70 309 123 391 2.82e-49 169
MsG0380017850.01.T01 AT2G36010 32.641 337 146 11 52 309 114 448 1.46e-34 131
MsG0380017850.01.T01 AT2G36010 32.448 339 146 11 52 309 114 450 3.29e-34 130
MsG0380017850.01.T01 AT5G22220 43.077 195 71 5 69 225 92 284 2.58e-33 127
MsG0380017850.01.T01 AT5G22220 43.077 195 71 5 69 225 92 284 2.65e-33 127
MsG0380017850.01.T01 AT2G36010 33.019 318 151 12 52 309 164 479 1.93e-32 126

Find 67 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTGATAAATTTCT+TGG 0.195269 3:+101398711 None:intergenic
TACCATTATGCTTTCCTCTT+TGG 0.206217 3:+101399032 None:intergenic
ACAAATTACTCCTACGGATT+TGG 0.244715 3:-101396454 MsG0380017850.01.T01:CDS
TAAAACTGCTGAGATCTTAA+AGG 0.260105 3:-101398656 MsG0380017850.01.T01:intron
TCGCTTGACTCGGAGGCTTT+TGG 0.262921 3:-101396483 MsG0380017850.01.T01:CDS
TGCAGGTTGATGGTGATTAT+TGG 0.273035 3:-101396331 MsG0380017850.01.T01:intron
ATATTTACTTCCACCGGATA+TGG 0.278597 3:+101398429 None:intergenic
AACATAGAAGAAGAAGTAAA+AGG 0.295787 3:+101400238 None:intergenic
ACAAATGTTCTTGAAGGAAT+AGG 0.317166 3:-101398476 MsG0380017850.01.T01:CDS
ACCTCAATGAAACTAGCTTT+TGG 0.340106 3:+101396969 None:intergenic
TTATGCTTTCCTCTTTGGTT+GGG 0.365134 3:+101399037 None:intergenic
GACATTACAAATGTTCTTGA+AGG 0.381084 3:-101398482 MsG0380017850.01.T01:CDS
ATTATGCTTTCCTCTTTGGT+TGG 0.394432 3:+101399036 None:intergenic
ACAATTCTGTTAGGCCAACT+TGG 0.403992 3:+101396294 None:intergenic
ATCTTCTAACTTTGACTGCT+TGG 0.404072 3:+101396596 None:intergenic
TGGACTTGAGCCACGAGAAC+TGG 0.409912 3:-101398308 MsG0380017850.01.T01:CDS
TTAACAGTGTTGCTCTGATT+CGG 0.418919 3:+101399085 None:intergenic
AAGTTGAATCCCACCTCATC+AGG 0.430971 3:+101396939 None:intergenic
AATCCCACCTCATCAGGATC+AGG 0.450123 3:+101396945 None:intergenic
AACCAAAGAGGAAAGCATAA+TGG 0.451388 3:-101399034 MsG0380017850.01.T01:CDS
CGGCTGCAGAATGGAGGGTG+TGG 0.459695 3:-101396556 MsG0380017850.01.T01:CDS
AATCGTTACGACAGTTCCTT+AGG 0.464649 3:-101398834 MsG0380017850.01.T01:intron
CAATTCTGTTAGGCCAACTT+GGG 0.473073 3:+101396295 None:intergenic
GCGAATCAGATTTCAAATAC+AGG 0.481135 3:-101398980 MsG0380017850.01.T01:intron
GAGTTTAAGTTCGCTTGACT+CGG 0.483009 3:-101396493 MsG0380017850.01.T01:CDS
GCATCAAGTTAATACTCTAA+AGG 0.484382 3:-101398284 MsG0380017850.01.T01:CDS
TTGGGTTCAGTTTGAAGAAG+TGG 0.490056 3:+101399055 None:intergenic
CAGTTTGATCAATGAGGCTA+AGG 0.500273 3:-101398698 MsG0380017850.01.T01:CDS
AAACTTCAAAGAACCATATC+CGG 0.503618 3:-101398442 MsG0380017850.01.T01:intron
AGTTGGCCTAACAGAATTGT+GGG 0.505242 3:-101396291 MsG0380017850.01.T01:CDS
TAAGCAACTTATTACAATCA+AGG 0.507030 3:-101396994 MsG0380017850.01.T01:CDS
CAAGCACGACCACAAGTTTG+AGG 0.520279 3:-101396628 MsG0380017850.01.T01:intron
AATTCAACAAATTACTCCTA+CGG 0.521739 3:-101396460 MsG0380017850.01.T01:CDS
AAGTTGGCCTAACAGAATTG+TGG 0.522443 3:-101396292 MsG0380017850.01.T01:CDS
CAGCCGTTGCTACTCCGTGA+TGG 0.529933 3:+101396573 None:intergenic
GAGTAGCAACGGCTGCAGAA+TGG 0.537502 3:-101396565 MsG0380017850.01.T01:CDS
CATACCAGATGTGTAAAAGC+AGG 0.547778 3:+101398211 None:intergenic
TTTCAATCAGATCCCCAAGT+TGG 0.557691 3:-101396308 MsG0380017850.01.T01:CDS
TGAGGAATTTGATCGTCGGT+TGG 0.559998 3:+101400283 None:intergenic
GGCTGCAGAATGGAGGGTGT+GGG 0.561995 3:-101396555 MsG0380017850.01.T01:CDS
ATTTATCAGTTTGATCAATG+AGG 0.562030 3:-101398704 MsG0380017850.01.T01:CDS
TCCAAAAGCTAGTTTCATTG+AGG 0.562628 3:-101396970 MsG0380017850.01.T01:CDS
AAGCACGACCACAAGTTTGA+GGG 0.571657 3:-101396627 MsG0380017850.01.T01:CDS
AATAATGTCAACTTGCACAC+TGG 0.574183 3:-101399127 MsG0380017850.01.T01:CDS
GGTTCAGTTTGAAGAAGTGG+AGG 0.575422 3:+101399058 None:intergenic
ATGTGTAAAAGCAGGAAATG+TGG 0.578932 3:+101398219 None:intergenic
CTTATTCACAGGGGATGTGA+TGG 0.579582 3:-101398328 MsG0380017850.01.T01:intron
TAGCAACGGCTGCAGAATGG+AGG 0.582567 3:-101396562 MsG0380017850.01.T01:CDS
CACTCACACCCTCAAACTTG+TGG 0.587462 3:+101396619 None:intergenic
GATCCATCACGGAGTAGCAA+CGG 0.589664 3:-101396576 MsG0380017850.01.T01:CDS
CAAACTGAACCCAACCAAAG+AGG 0.600334 3:-101399046 MsG0380017850.01.T01:CDS
AGCGAACTTAAACTCCCAGA+AGG 0.601180 3:+101396501 None:intergenic
TTGATCAATGAGGCTAAGGA+TGG 0.604623 3:-101398694 MsG0380017850.01.T01:CDS
TTTAAGTTCGCTTGACTCGG+AGG 0.606411 3:-101396490 MsG0380017850.01.T01:CDS
AAAATGAGGAATTTGATCGT+CGG 0.607202 3:+101400279 None:intergenic
ACTTGATGCTCCAGTTCTCG+TGG 0.612095 3:+101398298 None:intergenic
GTGGGATTATTAGAAAACCA+AGG 0.618758 3:-101396537 MsG0380017850.01.T01:CDS
AGCAACGGCTGCAGAATGGA+GGG 0.619777 3:-101396561 MsG0380017850.01.T01:CDS
ATCCCACCTCATCAGGATCA+GGG 0.627980 3:+101396946 None:intergenic
GCGAACTTAAACTCCCAGAA+GGG 0.628059 3:+101396502 None:intergenic
AATTCTGTTAGGCCAACTTG+GGG 0.629313 3:+101396296 None:intergenic
ATTCATACATCCAAATCCGT+AGG 0.638390 3:+101396444 None:intergenic
TGAGGTCCCTGATCCTGATG+AGG 0.654451 3:-101396952 MsG0380017850.01.T01:intron
CAAAGTTAGAAGATCCATCA+CGG 0.662830 3:-101396587 MsG0380017850.01.T01:CDS
GTTGGCCTAACAGAATTGTG+GGG 0.672060 3:-101396290 MsG0380017850.01.T01:CDS
TTGGCCTAACAGAATTGTGG+GGG 0.685774 3:-101396289 MsG0380017850.01.T01:CDS
ACTGTCGTAACGATTGACTG+TGG 0.786828 3:+101398842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAAAAT+TGG + Chr3:101396394-101396413 None:intergenic 0.0%
!! TGAATAAATAAAATAATAGA+TGG - Chr3:101398903-101398922 MsG0380017850.01.T01:intron 10.0%
!!! AAATATCTAATCTTTTTATT+TGG - Chr3:101398166-101398185 MsG0380017850.01.T01:intron 10.0%
!!! AAATGATTTTTTTAACAAAA+TGG - Chr3:101396959-101396978 MsG0380017850.01.T01:CDS 10.0%
!!! ACATTATTTTTATTTTATGT+TGG - Chr3:101397680-101397699 MsG0380017850.01.T01:intron 10.0%
!!! ATTTAGAAAAAAATAGATTT+TGG - Chr3:101396899-101396918 MsG0380017850.01.T01:intron 10.0%
!!! CAAAATAAAAATGAAATTTT+AGG - Chr3:101400193-101400212 MsG0380017850.01.T01:intron 10.0%
!!! CATTATTTTTATTTTATGTT+GGG - Chr3:101397681-101397700 MsG0380017850.01.T01:intron 10.0%
!!! TTGTTAAAAAAATCATTTTT+AGG + Chr3:101396957-101396976 None:intergenic 10.0%
!!! TTTAAAAAAAATAGATTTTG+AGG - Chr3:101396755-101396774 MsG0380017850.01.T01:intron 10.0%
!! AAATAAATAAAAATTGGAGA+AGG + Chr3:101396388-101396407 None:intergenic 15.0%
!! AATAAAATGAATGAAAACTT+TGG + Chr3:101400219-101400238 None:intergenic 15.0%
!! AATGAAATGATAATATATGA+TGG - Chr3:101398225-101398244 MsG0380017850.01.T01:CDS 15.0%
!! ACAGAAAGAAAAAAAAATTA+GGG + Chr3:101399829-101399848 None:intergenic 15.0%
!! ACTAAAATTAGTATAACAAA+TGG + Chr3:101397125-101397144 None:intergenic 15.0%
!! ATGAAATGATAATATATGAT+GGG - Chr3:101398226-101398245 MsG0380017850.01.T01:CDS 15.0%
!! CTAAACTATATTATACATAT+AGG + Chr3:101398016-101398035 None:intergenic 15.0%
!! TACAGAAAGAAAAAAAAATT+AGG + Chr3:101399830-101399849 None:intergenic 15.0%
!! TGTTATTAATTAATCATTAG+AGG + Chr3:101400164-101400183 None:intergenic 15.0%
!!! ATCTTCAAAAAATGATTTTT+AGG + Chr3:101396851-101396870 None:intergenic 15.0%
!!! ATGTTTTTAATTTTGTTTGT+TGG - Chr3:101398808-101398827 MsG0380017850.01.T01:intron 15.0%
!!! TCTATTTTTTTCTAAATACA+AGG + Chr3:101396896-101396915 None:intergenic 15.0%
!!! TTCTCAATTTACTTTTTATA+GGG - Chr3:101397164-101397183 MsG0380017850.01.T01:intron 15.0%
!!! TTTCTCAATTTACTTTTTAT+AGG - Chr3:101397163-101397182 MsG0380017850.01.T01:intron 15.0%
!! AAATTGAATTGAGAAAAATG+AGG + Chr3:101396316-101396335 None:intergenic 20.0%
!! ACAAAAGTGAGTAATAATAA+TGG + Chr3:101399547-101399566 None:intergenic 20.0%
!! GAGAAACATAACATAAAAAA+AGG + Chr3:101397149-101397168 None:intergenic 20.0%
!! TAAGAAATCAAAACTCATAA+AGG + Chr3:101399391-101399410 None:intergenic 20.0%
!! TATCTTCTTTGGTAAAAAAA+AGG + Chr3:101399456-101399475 None:intergenic 20.0%
!! TCAAAAAAATCCAAAACAAA+CGG - Chr3:101397056-101397075 MsG0380017850.01.T01:intron 20.0%
!! TGAAAGAAGAAAAAAATGAT+CGG + Chr3:101396483-101396502 None:intergenic 20.0%
!!! AAAAAATGATCGGAAATTTT+TGG + Chr3:101396473-101396492 None:intergenic 20.0%
!!! AATTTAACATTTGTCTTTTC+AGG - Chr3:101398053-101398072 MsG0380017850.01.T01:intron 20.0%
!!! ATTATTATTTTAGGGTTTTG+TGG + Chr3:101399044-101399063 None:intergenic 20.0%
!!! CATTTTATTTGTATTTTTGC+AGG - Chr3:101400230-101400249 MsG0380017850.01.T01:intron 20.0%
!!! TATTTTTATTTTATGTTGGG+TGG - Chr3:101397684-101397703 MsG0380017850.01.T01:intron 20.0%
!!! TTAATATCCTTTTTCATTGT+TGG - Chr3:101399877-101399896 MsG0380017850.01.T01:intron 20.0%
!!! TTAGGTTGATTCATAATAAT+TGG + Chr3:101396567-101396586 None:intergenic 20.0%
!!! TTATTATTTTAGGGTTTTGT+GGG + Chr3:101399043-101399062 None:intergenic 20.0%
! AACATAGAAGAAGAAGTAAA+AGG + Chr3:101396343-101396362 None:intergenic 25.0%
! AATTCAACAAATTACTCCTA+CGG - Chr3:101400118-101400137 MsG0380017850.01.T01:intron 25.0%
! ACAAACTCACTATTACATAA+AGG + Chr3:101399419-101399438 None:intergenic 25.0%
! AGGATATTAACAAATAAGCA+CGG + Chr3:101399867-101399886 None:intergenic 25.0%
! ATTTATCAGTTTGATCAATG+AGG - Chr3:101397874-101397893 MsG0380017850.01.T01:intron 25.0%
! CTTATAATTAAGTCTGCTTA+TGG - Chr3:101397275-101397294 MsG0380017850.01.T01:intron 25.0%
! CTTTAAACCAACAATGAAAA+AGG + Chr3:101399887-101399906 None:intergenic 25.0%
! GATCAAACTGATAAATTTCT+TGG + Chr3:101397870-101397889 None:intergenic 25.0%
! GTATGATCGAATGATTAATT+AGG - Chr3:101398385-101398404 MsG0380017850.01.T01:intron 25.0%
! TAAGCAACTTATTACAATCA+AGG - Chr3:101399584-101399603 MsG0380017850.01.T01:intron 25.0%
! TCATATGTTCTACACATATT+TGG + Chr3:101399087-101399106 None:intergenic 25.0%
! TTCATCTATAGTATACAAAC+CGG + Chr3:101398555-101398574 None:intergenic 25.0%
! TTTATTTGGCACTTACTATT+GGG - Chr3:101398180-101398199 MsG0380017850.01.T01:intron 25.0%
! TTTCATTTCACAATATCGAT+CGG - Chr3:101396433-101396452 MsG0380017850.01.T01:intron 25.0%
!! CATTGTTGACTAATATTTGT+TGG + Chr3:101397341-101397360 None:intergenic 25.0%
!! TATACAAAGTTTTCGATACT+TGG + Chr3:101399513-101399532 None:intergenic 25.0%
!! TTGATTTGATATCATCATGT+TGG - Chr3:101398860-101398879 MsG0380017850.01.T01:CDS 25.0%
!! TTTTCTTCTTTCAATTCCTT+TGG - Chr3:101396490-101396509 MsG0380017850.01.T01:CDS 25.0%
!!! AGCAGTTTTATTTAGATCAA+GGG + Chr3:101397912-101397931 None:intergenic 25.0%
!!! TTAATTTTGTTTGTTGGATG+AGG - Chr3:101398814-101398833 MsG0380017850.01.T01:intron 25.0%
!!! TTTTATTTGGCACTTACTAT+TGG - Chr3:101398179-101398198 MsG0380017850.01.T01:intron 25.0%
AAAATGAGGAATTTGATCGT+CGG + Chr3:101396302-101396321 None:intergenic 30.0%
AAACTTCAAAGAACCATATC+CGG - Chr3:101398136-101398155 MsG0380017850.01.T01:intron 30.0%
AAGAGATCTCTTAACATCTT+AGG + Chr3:101396585-101396604 None:intergenic 30.0%
AAGGGTAAGAATATCTTCTT+TGG + Chr3:101399467-101399486 None:intergenic 30.0%
AATACAAGTTACTAGCAGTA+AGG - Chr3:101398650-101398669 MsG0380017850.01.T01:intron 30.0%
ACAAATGTTCTTGAAGGAAT+AGG - Chr3:101398102-101398121 MsG0380017850.01.T01:intron 30.0%
AGGAAAAAGAAGAAGACTTA+CGG + Chr3:101396368-101396387 None:intergenic 30.0%
ATGGACCAAATTATCAGAAT+TGG + Chr3:101399155-101399174 None:intergenic 30.0%
GACATTACAAATGTTCTTGA+AGG - Chr3:101398096-101398115 MsG0380017850.01.T01:intron 30.0%
GATTAGATATTTACTTCCAC+CGG + Chr3:101398158-101398177 None:intergenic 30.0%
GCATATAAAAGATCAGTTAG+AGG + Chr3:101399924-101399943 None:intergenic 30.0%
GCATCAAGTTAATACTCTAA+AGG - Chr3:101398294-101398313 MsG0380017850.01.T01:CDS 30.0%
TAAAACTGCTGAGATCTTAA+AGG - Chr3:101397922-101397941 MsG0380017850.01.T01:intron 30.0%
TAAGAGATCTCTTCTTTCAT+GGG - Chr3:101396592-101396611 MsG0380017850.01.T01:CDS 30.0%
TATTACCTGAACCTAAGAAA+GGG + Chr3:101398996-101399015 None:intergenic 30.0%
TTAAGAGATCTCTTCTTTCA+TGG - Chr3:101396591-101396610 MsG0380017850.01.T01:CDS 30.0%
TTATTACCTGAACCTAAGAA+AGG + Chr3:101398997-101399016 None:intergenic 30.0%
TTGGTCCAATTCTGATAATT+TGG - Chr3:101399147-101399166 MsG0380017850.01.T01:CDS 30.0%
! AATCTCTCCAAAGTATTTGT+TGG - Chr3:101398579-101398598 MsG0380017850.01.T01:intron 30.0%
! AGTGAGTTTGTTTGATCATT+AGG - Chr3:101399428-101399447 MsG0380017850.01.T01:intron 30.0%
! TTCAAGAGGTACAGATTTAT+CGG + Chr3:101399782-101399801 None:intergenic 30.0%
! TTTCTTTGACTTAACTGCAA+TGG + Chr3:101397424-101397443 None:intergenic 30.0%
! TTTTCGATACTTGGAGAAAA+AGG + Chr3:101399504-101399523 None:intergenic 30.0%
!! ACAGAAGTATTTCAATCTTG+AGG + Chr3:101398757-101398776 None:intergenic 30.0%
!! CAGAAGTATTTCAATCTTGA+GGG + Chr3:101398756-101398775 None:intergenic 30.0%
!! TAGATTTTGGAAAAGCTACT+TGG - Chr3:101396912-101396931 MsG0380017850.01.T01:intron 30.0%
!! TTTGTATTTTTGCAGGTTGA+TGG - Chr3:101400237-101400256 MsG0380017850.01.T01:CDS 30.0%
!!! CAGCAGTTTTATTTAGATCA+AGG + Chr3:101397913-101397932 None:intergenic 30.0%
!!! TGTCTTTTCAGGTTCAAAAA+AGG - Chr3:101398064-101398083 MsG0380017850.01.T01:intron 30.0%
AATAATGTCAACTTGCACAC+TGG - Chr3:101397451-101397470 MsG0380017850.01.T01:intron 35.0%
ACAAATTACTCCTACGGATT+TGG - Chr3:101400124-101400143 MsG0380017850.01.T01:intron 35.0%
ACATGTTAATGTACAACTGC+AGG + Chr3:101396521-101396540 None:intergenic 35.0%
ACCAATGTTATATTCTCTCG+GGG - Chr3:101396638-101396657 MsG0380017850.01.T01:intron 35.0%
ACTGCTACCAACAAATACTT+TGG + Chr3:101398589-101398608 None:intergenic 35.0%
ATAACATTGGTGCATTCCTA+GGG + Chr3:101396629-101396648 None:intergenic 35.0%
ATATTTACTTCCACCGGATA+TGG + Chr3:101398152-101398171 None:intergenic 35.0%
ATCTTCTAACTTTGACTGCT+TGG + Chr3:101399985-101400004 None:intergenic 35.0%
ATGTGTAAAAGCAGGAAATG+TGG + Chr3:101398362-101398381 None:intergenic 35.0%
ATTATGCTTTCCTCTTTGGT+TGG + Chr3:101397545-101397564 None:intergenic 35.0%
ATTCATACATCCAAATCCGT+AGG + Chr3:101400137-101400156 None:intergenic 35.0%
CAAAGTTAGAAGATCCATCA+CGG - Chr3:101399991-101400010 MsG0380017850.01.T01:intron 35.0%
CAAATTAATGCTCTGCAGTA+TGG - Chr3:101399117-101399136 MsG0380017850.01.T01:CDS 35.0%
CACCAATGTTATATTCTCTC+GGG - Chr3:101396637-101396656 MsG0380017850.01.T01:intron 35.0%
CAGTTAGAGGCAATGAAATA+CGG + Chr3:101399911-101399930 None:intergenic 35.0%
CATAAAAGATCACTTGAGTG+TGG + Chr3:101397775-101397794 None:intergenic 35.0%
GAAATATACGCAATCAGTCT+TGG - Chr3:101398960-101398979 MsG0380017850.01.T01:intron 35.0%
GAACCTAAGAAAGGGAAAAT+TGG + Chr3:101398988-101399007 None:intergenic 35.0%
GCACCAATGTTATATTCTCT+CGG - Chr3:101396636-101396655 MsG0380017850.01.T01:intron 35.0%
GCGAATCAGATTTCAAATAC+AGG - Chr3:101397598-101397617 MsG0380017850.01.T01:intron 35.0%
GCTGAGTGTCTTCATTAATT+TGG - Chr3:101397794-101397813 MsG0380017850.01.T01:intron 35.0%
GGAAAAAGAAGAAGACTTAC+GGG + Chr3:101396367-101396386 None:intergenic 35.0%
GTCAATTCTCAGTGAAAGAA+AGG - Chr3:101399303-101399322 MsG0380017850.01.T01:intron 35.0%
GTGAAAGAAAGGAGCTTATA+AGG - Chr3:101399314-101399333 MsG0380017850.01.T01:intron 35.0%
GTGGGATTATTAGAAAACCA+AGG - Chr3:101400041-101400060 MsG0380017850.01.T01:intron 35.0%
TACCATTATGCTTTCCTCTT+TGG + Chr3:101397549-101397568 None:intergenic 35.0%
TATAACATTGGTGCATTCCT+AGG + Chr3:101396630-101396649 None:intergenic 35.0%
TATAGGTCAAGCTCAAAATC+AGG + Chr3:101397999-101398018 None:intergenic 35.0%
TGTCAGAAGTTCTTACTTTC+CGG + Chr3:101399362-101399381 None:intergenic 35.0%
TTACATCATGTACTGTTTGC+AGG - Chr3:101397836-101397855 MsG0380017850.01.T01:intron 35.0%
TTAGTTTCCTTCCAAGTCAT+AGG - Chr3:101398459-101398478 MsG0380017850.01.T01:CDS 35.0%
TTATGCTTTCCTCTTTGGTT+GGG + Chr3:101397544-101397563 None:intergenic 35.0%
! AACCAAAGAGGAAAGCATAA+TGG - Chr3:101397544-101397563 MsG0380017850.01.T01:intron 35.0%
! ATGATTGTTAGAAGTGCAAC+TGG - Chr3:101399755-101399774 MsG0380017850.01.T01:intron 35.0%
! ATTTTCCCTTTCTTAGGTTC+AGG - Chr3:101398988-101399007 MsG0380017850.01.T01:CDS 35.0%
! CATTATTTCTTGAAGCCGAA+AGG - Chr3:101398694-101398713 MsG0380017850.01.T01:CDS 35.0%
! GTTCCAATTTTCCCTTTCTT+AGG - Chr3:101398982-101399001 MsG0380017850.01.T01:CDS 35.0%
! GTTTTCAGAAAAACCCTTCT+GGG - Chr3:101400063-101400082 MsG0380017850.01.T01:intron 35.0%
! TCCAAAAGCTAGTTTCATTG+AGG - Chr3:101399608-101399627 MsG0380017850.01.T01:intron 35.0%
! TTAACAGTGTTGCTCTGATT+CGG + Chr3:101397496-101397515 None:intergenic 35.0%
!! AAGGGTTTTTCTGAAAACCT+TGG + Chr3:101400061-101400080 None:intergenic 35.0%
!! ATTTCCTGCTTTTACACATC+TGG - Chr3:101398363-101398382 MsG0380017850.01.T01:intron 35.0%
!!! ACCTCAATGAAACTAGCTTT+TGG + Chr3:101399612-101399631 None:intergenic 35.0%
!!! TTTTGTGGGTAAAGAGTGTT+TGG + Chr3:101399029-101399048 None:intergenic 35.0%
AAAGGAGCTTATAAGGAACC+TGG - Chr3:101399321-101399340 MsG0380017850.01.T01:intron 40.0%
AATCGTTACGACAGTTCCTT+AGG - Chr3:101397744-101397763 MsG0380017850.01.T01:intron 40.0%
AATGCTCTGCAGTATGGAAA+TGG - Chr3:101399123-101399142 MsG0380017850.01.T01:CDS 40.0%
AATTCTGTTAGGCCAACTTG+GGG + Chr3:101400285-101400304 None:intergenic 40.0%
ACAATTCTGTTAGGCCAACT+TGG + Chr3:101400287-101400306 None:intergenic 40.0%
ATACAAGGAGCTCAAGTGTA+AGG + Chr3:101396881-101396900 None:intergenic 40.0%
ATACTTGGAGAAAAAGGACC+TGG + Chr3:101399498-101399517 None:intergenic 40.0%
ATGGGTTTCAATCTAACCCT+AGG - Chr3:101396610-101396629 MsG0380017850.01.T01:CDS 40.0%
CAATCATTCTGTACTGCCTT+TGG + Chr3:101399742-101399761 None:intergenic 40.0%
CAATTCTGTTAGGCCAACTT+GGG + Chr3:101400286-101400305 None:intergenic 40.0%
CACTCAAATGAGCAGGAATT+AGG - Chr3:101399710-101399729 MsG0380017850.01.T01:intron 40.0%
CAGGAATCTTATTGTCTTCG+TGG - Chr3:101398485-101398504 MsG0380017850.01.T01:CDS 40.0%
CAGTTTGATCAATGAGGCTA+AGG - Chr3:101397880-101397899 MsG0380017850.01.T01:intron 40.0%
CATACCAGATGTGTAAAAGC+AGG + Chr3:101398370-101398389 None:intergenic 40.0%
CTATCAACTTCATCCTGCAA+TGG + Chr3:101399174-101399193 None:intergenic 40.0%
CTGAATTCAGAGAGTCTGAT+AGG + Chr3:101397716-101397735 None:intergenic 40.0%
CTGATAATTTGGTCCATTGC+AGG - Chr3:101399158-101399177 MsG0380017850.01.T01:intron 40.0%
GAGGTGGGATTCAACTTATA+TGG - Chr3:101399645-101399664 MsG0380017850.01.T01:intron 40.0%
GATTCCTGAAACCTATGACT+TGG + Chr3:101398473-101398492 None:intergenic 40.0%
GCAAACTTGACCAGTGTATA+AGG - Chr3:101399211-101399230 MsG0380017850.01.T01:intron 40.0%
TACAAGGAGCTCAAGTGTAA+GGG + Chr3:101396880-101396899 None:intergenic 40.0%
TCAGCCCAAAAGTTTCCTTT+CGG + Chr3:101398712-101398731 None:intergenic 40.0%
TCCCCGAGAGAATATAACAT+TGG + Chr3:101396642-101396661 None:intergenic 40.0%
TCCTAGGTGCAATGTCTAAT+CGG + Chr3:101398528-101398547 None:intergenic 40.0%
TCTGCAGTATGGAAATGGTT+TGG - Chr3:101399128-101399147 MsG0380017850.01.T01:CDS 40.0%
TTGATCAATGAGGCTAAGGA+TGG - Chr3:101397884-101397903 MsG0380017850.01.T01:intron 40.0%
TTGGGTTCAGTTTGAAGAAG+TGG + Chr3:101397526-101397545 None:intergenic 40.0%
TTTCAATCAGATCCCCAAGT+TGG - Chr3:101400270-101400289 MsG0380017850.01.T01:CDS 40.0%
! AAGTTGGCCTAACAGAATTG+TGG - Chr3:101400286-101400305 MsG0380017850.01.T01:CDS 40.0%
! AGTTGGCCTAACAGAATTGT+GGG - Chr3:101400287-101400306 MsG0380017850.01.T01:CDS 40.0%
! GAAGCCGAAAGGAAACTTTT+GGG - Chr3:101398705-101398724 MsG0380017850.01.T01:CDS 40.0%
! GAGTTTAAGTTCGCTTGACT+CGG - Chr3:101400085-101400104 MsG0380017850.01.T01:intron 40.0%
! GGTTTTCAGAAAAACCCTTC+TGG - Chr3:101400062-101400081 MsG0380017850.01.T01:intron 40.0%
! TGAAGCCGAAAGGAAACTTT+TGG - Chr3:101398704-101398723 MsG0380017850.01.T01:CDS 40.0%
!! AGTTGATAGCTTATATGCCG+AGG - Chr3:101399185-101399204 MsG0380017850.01.T01:intron 40.0%
!! ATATGATGGGCCTTATTCAC+AGG - Chr3:101398239-101398258 MsG0380017850.01.T01:CDS 40.0%
!! CAGAAGAGAAGTACTTCAAG+AGG + Chr3:101399796-101399815 None:intergenic 40.0%
!! GGTAAAGAGTGTTTGGCTAA+AGG + Chr3:101399022-101399041 None:intergenic 40.0%
!! GTTGAGCGCTGAATTTAAAG+TGG - Chr3:101396677-101396696 MsG0380017850.01.T01:intron 40.0%
!! TATGATGGGCCTTATTCACA+GGG - Chr3:101398240-101398259 MsG0380017850.01.T01:CDS 40.0%
!! TCGGGGATTAGTCTATTATG+AGG - Chr3:101396655-101396674 MsG0380017850.01.T01:intron 40.0%
!! TGCAGGTTGATGGTGATTAT+TGG - Chr3:101400247-101400266 MsG0380017850.01.T01:CDS 40.0%
!! TGTTGGTAGCAGTACAGTTA+AGG - Chr3:101398596-101398615 MsG0380017850.01.T01:intron 40.0%
AAGCACGACCACAAGTTTGA+GGG - Chr3:101399951-101399970 MsG0380017850.01.T01:intron 45.0%
AAGTTGAATCCCACCTCATC+AGG + Chr3:101399642-101399661 None:intergenic 45.0%
ACAACTGCAGGTGAAACCAA+AGG + Chr3:101396509-101396528 None:intergenic 45.0%
ACCAGTGTATAAGGTTCGCT+AGG - Chr3:101399220-101399239 MsG0380017850.01.T01:intron 45.0%
ACCATCGGGCATGTATACAA+TGG + Chr3:101397963-101397982 None:intergenic 45.0%
ACCGATTAGACATTGCACCT+AGG - Chr3:101398524-101398543 MsG0380017850.01.T01:intron 45.0%
ACCTAGCGAACCTTATACAC+TGG + Chr3:101399224-101399243 None:intergenic 45.0%
ACTGTCGTAACGATTGACTG+TGG + Chr3:101397739-101397758 None:intergenic 45.0%
AGAAAAAGGACCTGGAAGCA+TGG + Chr3:101399490-101399509 None:intergenic 45.0%
AGCGAACTTAAACTCCCAGA+AGG + Chr3:101400080-101400099 None:intergenic 45.0%
AGGAATTAGGCTTCCACCAA+AGG - Chr3:101399723-101399742 MsG0380017850.01.T01:intron 45.0%
AGTGTGCCTAGATCAGTTCT+AGG + Chr3:101397084-101397103 None:intergenic 45.0%
CAAACTGAACCCAACCAAAG+AGG - Chr3:101397532-101397551 MsG0380017850.01.T01:intron 45.0%
CATCACATCCCCTGTGAATA+AGG + Chr3:101398252-101398271 None:intergenic 45.0%
CCTTCCAAGTCATAGGTTTC+AGG - Chr3:101398466-101398485 MsG0380017850.01.T01:CDS 45.0%
CTGGTCAAGTTTGCATTCCT+CGG + Chr3:101399205-101399224 None:intergenic 45.0%
CTTATAAGGAACCTGGAGGA+AGG - Chr3:101399328-101399347 MsG0380017850.01.T01:intron 45.0%
CTTATTCACAGGGGATGTGA+TGG - Chr3:101398250-101398269 MsG0380017850.01.T01:CDS 45.0%
CTTCAAAGAACCATATCCGG+TGG - Chr3:101398139-101398158 MsG0380017850.01.T01:intron 45.0%
CTTGAGTGTGGACATACCTA+AGG + Chr3:101397763-101397782 None:intergenic 45.0%
GACTTCTCACTCAAATGAGC+AGG - Chr3:101399703-101399722 MsG0380017850.01.T01:intron 45.0%
GCCTGCTAATATGAACCATC+GGG + Chr3:101397977-101397996 None:intergenic 45.0%
GCGAACTTAAACTCCCAGAA+GGG + Chr3:101400079-101400098 None:intergenic 45.0%
GGCCTGCTAATATGAACCAT+CGG + Chr3:101397978-101397997 None:intergenic 45.0%
GGTTCAGTTTGAAGAAGTGG+AGG + Chr3:101397523-101397542 None:intergenic 45.0%
GTGTGCCTAGATCAGTTCTA+GGG + Chr3:101397083-101397102 None:intergenic 45.0%
TATACAAACCGGAGACTCCT+AGG + Chr3:101398544-101398563 None:intergenic 45.0%
TCATTCTGTACTGCCTTTGG+TGG + Chr3:101399739-101399758 None:intergenic 45.0%
TCCATTGTATACATGCCCGA+TGG - Chr3:101397959-101397978 MsG0380017850.01.T01:intron 45.0%
TGAGGAATTTGATCGTCGGT+TGG + Chr3:101396298-101396317 None:intergenic 45.0%
TTGGCCTAACAGAATTGTGG+GGG - Chr3:101400289-101400308 MsG0380017850.01.T01:CDS 45.0%
! ATGCCGCTTGCTAGTTGTTA+GGG - Chr3:101396716-101396735 MsG0380017850.01.T01:intron 45.0%
! CCTGAAACCTATGACTTGGA+AGG + Chr3:101398469-101398488 None:intergenic 45.0%
! GCGAGCATTTAAAGTGTGAG+TGG + Chr3:101397386-101397405 None:intergenic 45.0%
! GTTGGCCTAACAGAATTGTG+GGG - Chr3:101400288-101400307 MsG0380017850.01.T01:CDS 45.0%
! TATGCCGCTTGCTAGTTGTT+AGG - Chr3:101396715-101396734 MsG0380017850.01.T01:intron 45.0%
!! ATGATGGGCCTTATTCACAG+GGG - Chr3:101398241-101398260 MsG0380017850.01.T01:CDS 45.0%
!! TTTAAGTTCGCTTGACTCGG+AGG - Chr3:101400088-101400107 MsG0380017850.01.T01:intron 45.0%
!!! GTTCTAGGGTCCGTTTGTTT+TGG + Chr3:101397069-101397088 None:intergenic 45.0%
!! TAAATAGTATATAAAAAATA+TGG + Chr3:101398442-101398461 None:intergenic 5.0%
!!! ACTATTATTATTATTATTTT+AGG + Chr3:101399053-101399072 None:intergenic 5.0%
!!! CTATTATTATTATTATTTTA+GGG + Chr3:101399052-101399071 None:intergenic 5.0%
AATCCCACCTCATCAGGATC+AGG + Chr3:101399636-101399655 None:intergenic 50.0%
ACATTGCACCTAGGAGTCTC+CGG - Chr3:101398533-101398552 MsG0380017850.01.T01:intron 50.0%
ACGGACCCTAGAACTGATCT+AGG - Chr3:101397075-101397094 MsG0380017850.01.T01:intron 50.0%
ACTTGATGCTCCAGTTCTCG+TGG + Chr3:101398283-101398302 None:intergenic 50.0%
ATCCCACCTCATCAGGATCA+GGG + Chr3:101399635-101399654 None:intergenic 50.0%
CAAGCACGACCACAAGTTTG+AGG - Chr3:101399950-101399969 MsG0380017850.01.T01:intron 50.0%
CACCCCTAACAACTAGCAAG+CGG + Chr3:101396722-101396741 None:intergenic 50.0%
CACTCACACCCTCAAACTTG+TGG + Chr3:101399962-101399981 None:intergenic 50.0%
CAGTACAGTTAAGGCTGCTG+AGG - Chr3:101398605-101398624 MsG0380017850.01.T01:intron 50.0%
CTGGAGGAAGGTGAAAACAC+CGG - Chr3:101399340-101399359 MsG0380017850.01.T01:intron 50.0%
GATCCATCACGGAGTAGCAA+CGG - Chr3:101400002-101400021 MsG0380017850.01.T01:intron 50.0%
GCCCGATGGTTCATATTAGC+AGG - Chr3:101397973-101397992 MsG0380017850.01.T01:intron 50.0%
GCTGCTGAGGATGATAACAG+TGG - Chr3:101398618-101398637 MsG0380017850.01.T01:intron 50.0%
GGAGCTTATAAGGAACCTGG+AGG - Chr3:101399324-101399343 MsG0380017850.01.T01:intron 50.0%
TCTTACCCTTCCATGCTTCC+AGG - Chr3:101399477-101399496 MsG0380017850.01.T01:intron 50.0%
! AAAGGACCTGGAAGCATGGA+AGG + Chr3:101399486-101399505 None:intergenic 50.0%
! AAGGACCTGGAAGCATGGAA+GGG + Chr3:101399485-101399504 None:intergenic 50.0%
! TGCCGCTTGCTAGTTGTTAG+GGG - Chr3:101396717-101396736 MsG0380017850.01.T01:intron 50.0%
AGCAACGGCTGCAGAATGGA+GGG - Chr3:101400017-101400036 MsG0380017850.01.T01:intron 55.0%
GAGTAGCAACGGCTGCAGAA+TGG - Chr3:101400013-101400032 MsG0380017850.01.T01:intron 55.0%
GTCCCTGATCCTGATGAGGT+GGG - Chr3:101399630-101399649 MsG0380017850.01.T01:intron 55.0%
TAGCAACGGCTGCAGAATGG+AGG - Chr3:101400016-101400035 MsG0380017850.01.T01:intron 55.0%
TGAGGTCCCTGATCCTGATG+AGG - Chr3:101399626-101399645 MsG0380017850.01.T01:intron 55.0%
TGGACTTGAGCCACGAGAAC+TGG - Chr3:101398270-101398289 MsG0380017850.01.T01:CDS 55.0%
! CGGTGTTTTCACCTTCCTCC+AGG + Chr3:101399342-101399361 None:intergenic 55.0%
!!! TCGCTTGACTCGGAGGCTTT+TGG - Chr3:101400095-101400114 MsG0380017850.01.T01:intron 55.0%
CAGCCGTTGCTACTCCGTGA+TGG + Chr3:101400008-101400027 None:intergenic 60.0%
GGTCCCTGATCCTGATGAGG+TGG - Chr3:101399629-101399648 MsG0380017850.01.T01:intron 60.0%
! GGCTGCAGAATGGAGGGTGT+GGG - Chr3:101400023-101400042 MsG0380017850.01.T01:intron 60.0%
CGGCTGCAGAATGGAGGGTG+TGG - Chr3:101400022-101400041 MsG0380017850.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101396286 101400314 101396286 ID=MsG0380017850.01;Name=MsG0380017850.01
Chr3 mRNA 101396286 101400314 101396286 ID=MsG0380017850.01.T01;Parent=MsG0380017850.01;Name=MsG0380017850.01.T01;_AED=0.34;_eAED=0.39;_QI=0|0|0|1|1|1|9|0|310
Chr3 exon 101400234 101400314 101400234 ID=MsG0380017850.01.T01:exon:18112;Parent=MsG0380017850.01.T01
Chr3 exon 101398981 101399170 101398981 ID=MsG0380017850.01.T01:exon:18111;Parent=MsG0380017850.01.T01
Chr3 exon 101398835 101398879 101398835 ID=MsG0380017850.01.T01:exon:18110;Parent=MsG0380017850.01.T01
Chr3 exon 101398657 101398742 101398657 ID=MsG0380017850.01.T01:exon:18109;Parent=MsG0380017850.01.T01
Chr3 exon 101398443 101398525 101398443 ID=MsG0380017850.01.T01:exon:18108;Parent=MsG0380017850.01.T01
Chr3 exon 101398216 101398339 101398216 ID=MsG0380017850.01.T01:exon:18107;Parent=MsG0380017850.01.T01
Chr3 exon 101396953 101397018 101396953 ID=MsG0380017850.01.T01:exon:18106;Parent=MsG0380017850.01.T01
Chr3 exon 101396452 101396646 101396452 ID=MsG0380017850.01.T01:exon:18105;Parent=MsG0380017850.01.T01
Chr3 exon 101396286 101396348 101396286 ID=MsG0380017850.01.T01:exon:18104;Parent=MsG0380017850.01.T01
Chr3 CDS 101400234 101400314 101400234 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101398981 101399170 101398981 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101398835 101398879 101398835 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101398657 101398742 101398657 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101398443 101398525 101398443 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101398216 101398339 101398216 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101396953 101397018 101396953 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101396452 101396646 101396452 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Chr3 CDS 101396286 101396348 101396286 ID=MsG0380017850.01.T01:cds;Parent=MsG0380017850.01.T01
Gene Sequence

>MsG0380017850.01.T01

ATGTCGACTCCAACCGACGATCAAATTCCTCATTTTTCTCAATTCAATTTCACTCCTTTTACTTCTTCTTCTATGTTTCCCTTAAGTCAAAGAAATGAAATCAATAATGTCAACTTGCACACTGGTAGTAACGTTGAAGCGTTTCCGAATCAGAGCAACACTGTTAATCTTCCTCCACTTCTTCAAACTGAACCCAACCAAAGAGGAAAGCATAATGGTAAATCAAAAGTTTCAAAAAATTCAAAATCTGCGAATCAGATTTCAAATACAGACTCTCTGAATTCAGCCACAGTCAATCGTTACGACAGTTCCTTAGGATTGTTAACCAAGAAATTTATCAGTTTGATCAATGAGGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGATCTTAAAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATCCGGGGATGTGATGGACTTGAGCCACGAGAACTGGAGCATCAAGTTAATACTCTAAAGGTTTGTCAATCTTTTTTTACTTATCAGTTAGTTAATATGTATTCCACATTTCCTGCTTTTACACATCTGAATAAGCAACTTATTACAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCTGATGAGCACGACCACAAGTTTGAGGGTGTGAGTGCCAAGCAGTCAAAGTTAGAAGATCCATCACGGAGTAGCAACGGCTGCAGAATGGAGGGTGTGGGATTATTAGAAAACCAAGGTTTTCAGAAAAACCCTTCTGGGAGTTTAAGTTCGCTTGACTCGGAGGCTTTTGGAATTCAACAAATTACTCCTACGGATTTGGATGTTGATGGTGATTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAGAATTGTGGGGGTAG
Protein sequence

>MsG0380017850.01.T01

MSTPTDDQIPHFSQFNFTPFTSSSMFPLSQRNEINNVNLHTGSNVEAFPNQSNTVNLPPLLQTEPNQRGKHNGKSKVSKNSKSANQISNTDSLNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKTSKNHIRGCDGLEPRELEHQVNTLKVCQSFFTYQLVNMYSTFPAFTHLNKQLITIKAPKASFIEVPDPDEHDHKFEGVSAKQSKLEDPSRSSNGCRMEGVGLLENQGFQKNPSGSLSSLDSEAFGIQQITPTDLDVDGDYWFQSDPQVGLTELWG*