AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018876.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018876.01.T01 MTR_1g010220 98.361 61 1 0 34 94 495 555 1.38e-34 125
MsG0480018876.01.T01 MTR_1g010250 85.246 61 9 0 34 94 376 436 2.42e-28 107
MsG0480018876.01.T01 MTR_1g027640 77.419 62 13 1 34 94 496 557 5.61e-24 95.5
MsG0480018876.01.T01 MTR_1g010260 79.032 62 12 1 34 94 503 564 8.76e-24 94.7
MsG0480018876.01.T01 MTR_1g027600 75.806 62 14 1 34 94 494 555 1.45e-23 94.0
MsG0480018876.01.T01 MTR_1g010240 77.419 62 13 1 34 94 417 478 3.33e-23 93.2
MsG0480018876.01.T01 MTR_1g027570 74.194 62 15 1 34 94 491 552 6.88e-23 92.0
MsG0480018876.01.T01 MTR_1g027660 72.581 62 16 1 34 94 468 529 6.10e-22 89.4
MsG0480018876.01.T01 MTR_1g027670 78.846 52 11 0 44 95 144 195 1.28e-21 87.8
MsG0480018876.01.T01 MTR_1g027580 70.968 62 17 1 34 94 491 552 1.57e-21 88.2
MsG0480018876.01.T01 MTR_1g027490 64.706 68 23 1 28 94 470 537 5.69e-21 86.7
MsG0480018876.01.T01 MTR_3g088750 70.492 61 18 0 34 94 506 566 1.32e-20 85.9
MsG0480018876.01.T01 MTR_2g009670 70.492 61 18 0 34 94 511 571 1.41e-20 85.5
MsG0480018876.01.T01 MTR_3g088760 67.213 61 20 0 34 94 501 561 4.75e-20 84.0
MsG0480018876.01.T01 MTR_3g088755 65.574 61 21 0 34 94 508 568 6.24e-20 84.0
MsG0480018876.01.T01 MTR_3g088780 65.574 61 20 1 34 94 505 564 3.74e-19 81.6
MsG0480018876.01.T01 MTR_3g088785 63.934 61 22 0 34 94 503 563 4.17e-19 81.3
MsG0480018876.01.T01 MTR_3g088775 63.934 61 22 0 34 94 524 584 1.29e-18 80.1
MsG0480018876.01.T01 MTR_7g079350 54.098 61 28 0 34 94 442 502 2.41e-17 76.3
MsG0480018876.01.T01 MTR_7g079320 54.098 61 28 0 34 94 435 495 8.05e-17 74.7
MsG0480018876.01.T01 MTR_2g031520 58.333 60 25 0 35 94 463 522 6.40e-16 72.4
MsG0480018876.01.T01 MTR_2g031530 59.259 54 22 0 35 88 477 530 7.35e-15 69.3
MsG0480018876.01.T01 MTR_2g090710 54.098 61 27 1 34 94 774 833 7.82e-14 66.2
MsG0480018876.01.T01 MTR_8g070880 48.684 76 31 2 27 94 693 768 7.81e-13 63.5
MsG0480018876.01.T01 MTR_7g103180 63.265 49 18 0 46 94 437 485 8.57e-13 63.5
MsG0480018876.01.T01 MTR_3g008270 46.269 67 36 0 28 94 517 583 1.55e-12 62.8
MsG0480018876.01.T01 MTR_3g111510 54.545 55 24 1 34 88 414 467 2.25e-12 62.4
MsG0480018876.01.T01 MTR_5g018570 58.929 56 20 2 34 88 410 463 3.12e-12 62.0
MsG0480018876.01.T01 MTR_8g070910 47.368 76 32 2 27 94 340 415 3.30e-12 61.6
MsG0480018876.01.T01 MTR_2g104790 44.776 67 37 0 28 94 196 262 3.75e-12 61.6
MsG0480018876.01.T01 MTR_3g062570 47.368 76 30 2 28 94 434 508 3.93e-12 61.6
MsG0480018876.01.T01 MTR_3g062570 47.368 76 30 2 28 94 570 644 3.99e-12 61.6
MsG0480018876.01.T01 MTR_3g062570 47.368 76 30 2 28 94 685 759 4.03e-12 61.6
MsG0480018876.01.T01 MTR_3g008280 44.776 67 37 0 28 94 526 592 4.11e-12 61.6
MsG0480018876.01.T01 MTR_3g008280 44.776 67 37 0 28 94 518 584 4.44e-12 61.2
MsG0480018876.01.T01 MTR_2g084120 61.702 47 18 0 48 94 192 238 6.08e-12 60.8
MsG0480018876.01.T01 MTR_4g073140 54.386 57 23 1 34 87 380 436 8.33e-12 60.5
MsG0480018876.01.T01 MTR_4g085810 47.541 61 31 1 34 94 405 464 8.72e-12 60.5
MsG0480018876.01.T01 MTR_4g073140 54.386 57 23 1 34 87 380 436 1.05e-11 60.5
MsG0480018876.01.T01 MTR_8g028115 53.846 52 24 0 43 94 10 61 1.19e-11 59.3
MsG0480018876.01.T01 MTR_3g104660 41.791 67 39 0 28 94 483 549 1.38e-11 60.1
MsG0480018876.01.T01 MTR_4g073140 54.386 57 23 1 34 87 380 436 1.57e-11 59.7
MsG0480018876.01.T01 MTR_8g028110 53.846 52 24 0 43 94 660 711 1.94e-11 59.7
MsG0480018876.01.T01 MTR_4g088320 47.761 67 34 1 28 94 772 837 2.22e-11 59.3
MsG0480018876.01.T01 MTR_1g009310 44.262 61 34 0 34 94 545 605 2.42e-11 59.3
MsG0480018876.01.T01 MTR_3g437630 54.000 50 23 0 45 94 896 945 3.74e-11 58.9
MsG0480018876.01.T01 MTR_4g036505 46.269 67 35 1 35 100 779 845 4.29e-11 58.5
MsG0480018876.01.T01 MTR_6g016040 53.191 47 22 0 48 94 208 254 4.51e-11 58.5
MsG0480018876.01.T01 MTR_7g077780 40.845 71 36 1 34 98 615 685 4.88e-11 58.5
MsG0480018876.01.T01 MTR_4g005130 50.000 56 27 1 34 88 578 633 5.23e-11 58.2
MsG0480018876.01.T01 MTR_7g015390 49.315 73 31 3 23 94 605 672 8.74e-11 57.8
MsG0480018876.01.T01 MTR_2g099530 42.623 61 35 0 34 94 386 446 9.38e-11 57.8
MsG0480018876.01.T01 MTR_3g080170 35.106 94 57 2 3 94 398 489 9.59e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018876.01.T01 AT1G21270 63.934 61 22 0 34 94 484 544 1.43e-18 80.1
MsG0480018876.01.T01 AT1G21240 63.934 61 22 0 34 94 495 555 6.28e-18 78.2
MsG0480018876.01.T01 AT1G21230 65.574 61 21 0 34 94 488 548 7.77e-18 77.8
MsG0480018876.01.T01 AT1G21210 60.656 61 24 0 34 94 490 550 1.23e-17 77.4
MsG0480018876.01.T01 AT1G21240 63.934 61 22 0 34 94 234 294 1.48e-17 77.0
MsG0480018876.01.T01 AT1G16110 62.069 58 20 1 39 94 517 574 1.91e-17 76.6
MsG0480018876.01.T01 AT1G21250 62.295 61 23 0 34 94 489 549 2.57e-17 76.3
MsG0480018876.01.T01 AT1G16130 61.404 57 20 1 40 94 500 556 1.24e-16 74.3
MsG0480018876.01.T01 AT1G16120 57.627 59 23 1 38 94 511 569 1.83e-16 73.9
MsG0480018876.01.T01 AT3G25490 70.833 48 14 0 48 95 202 249 3.08e-16 73.2
MsG0480018876.01.T01 AT1G16160 57.627 59 23 1 38 94 514 572 3.15e-16 73.2
MsG0480018876.01.T01 AT1G79680 69.565 46 14 0 49 94 529 574 7.58e-16 72.0
MsG0480018876.01.T01 AT1G79670 57.627 59 23 1 38 94 466 524 1.27e-15 71.6
MsG0480018876.01.T01 AT1G79670 57.627 59 23 1 38 94 503 561 1.28e-15 71.6
MsG0480018876.01.T01 AT1G16150 61.111 54 21 0 35 88 505 558 2.48e-15 70.9
MsG0480018876.01.T01 AT1G19390 77.500 40 9 0 49 88 546 585 6.14e-15 69.7
MsG0480018876.01.T01 AT4G31100 68.085 47 15 0 48 94 539 585 8.13e-15 69.3
MsG0480018876.01.T01 AT1G16260 70.213 47 14 0 48 94 475 521 8.64e-15 69.3
MsG0480018876.01.T01 AT1G16260 70.213 47 14 0 48 94 484 530 8.65e-15 69.3
MsG0480018876.01.T01 AT1G16260 70.213 47 14 0 48 94 484 530 8.65e-15 69.3
MsG0480018876.01.T01 AT1G69730 69.565 46 14 0 49 94 543 588 9.14e-15 68.9
MsG0480018876.01.T01 AT4G31110 65.957 47 16 0 48 94 526 572 2.93e-14 67.8
MsG0480018876.01.T01 AT4G31110 65.957 47 16 0 48 94 548 594 2.96e-14 67.8
MsG0480018876.01.T01 AT1G49100 45.946 74 40 0 21 94 648 721 3.60e-13 64.7
MsG0480018876.01.T01 AT5G12000 47.541 61 32 0 34 94 499 559 4.33e-13 64.3
MsG0480018876.01.T01 AT5G12000 47.541 61 32 0 34 94 414 474 4.49e-13 64.3
MsG0480018876.01.T01 AT5G26150 43.056 72 38 1 23 94 494 562 6.52e-13 63.9
MsG0480018876.01.T01 AT5G26150 43.056 72 38 1 23 94 499 567 7.26e-13 63.5
MsG0480018876.01.T01 AT1G35710 43.836 73 39 1 24 94 924 996 8.25e-13 63.5
MsG0480018876.01.T01 AT4G20450 50.000 60 30 0 35 94 672 731 9.14e-13 63.5
MsG0480018876.01.T01 AT4G20450 50.000 60 30 0 35 94 672 731 9.15e-13 63.5
MsG0480018876.01.T01 AT5G02070 63.830 47 17 0 48 94 459 505 1.68e-12 62.8
MsG0480018876.01.T01 AT5G07180 44.928 69 38 0 26 94 627 695 1.86e-12 62.4
MsG0480018876.01.T01 AT5G07180 44.928 69 38 0 26 94 723 791 1.87e-12 62.4
MsG0480018876.01.T01 AT1G17910 60.000 45 18 0 50 94 550 594 1.89e-12 62.4
MsG0480018876.01.T01 AT1G72760 45.902 61 33 0 28 88 453 513 2.47e-12 62.0
MsG0480018876.01.T01 AT1G17540 44.776 67 37 0 28 94 480 546 2.50e-12 62.0
MsG0480018876.01.T01 AT1G72760 45.902 61 33 0 28 88 462 522 2.52e-12 62.0
MsG0480018876.01.T01 AT3G58690 59.574 47 19 0 48 94 185 231 3.53e-12 61.6
MsG0480018876.01.T01 AT1G79620 44.737 76 34 1 27 94 702 777 4.69e-12 61.2
MsG0480018876.01.T01 AT1G79620 44.737 76 34 1 27 94 702 777 4.75e-12 61.2
MsG0480018876.01.T01 AT1G79620 44.737 76 34 1 27 94 728 803 4.76e-12 61.2
MsG0480018876.01.T01 AT2G25220 43.284 67 38 0 28 94 220 286 4.81e-12 61.2
MsG0480018876.01.T01 AT2G25220 43.284 67 38 0 28 94 171 237 4.89e-12 61.2
MsG0480018876.01.T01 AT1G72760 44.776 67 37 0 28 94 462 528 5.10e-12 61.2
MsG0480018876.01.T01 AT2G25220 43.284 67 38 0 28 94 225 291 5.33e-12 61.2
MsG0480018876.01.T01 AT4G31230 45.902 61 33 0 34 94 544 604 5.36e-12 61.2
MsG0480018876.01.T01 AT2G25220 43.284 67 38 0 28 94 220 286 5.86e-12 60.8
MsG0480018876.01.T01 AT4G31230 45.902 61 33 0 34 94 445 505 6.30e-12 60.8
MsG0480018876.01.T01 AT2G25220 43.284 67 38 0 28 94 171 237 6.66e-12 60.8
MsG0480018876.01.T01 AT2G25220 43.284 67 38 0 28 94 220 286 7.46e-12 60.8
MsG0480018876.01.T01 AT1G05700 39.130 92 46 2 23 105 629 719 9.04e-12 60.5
MsG0480018876.01.T01 AT1G05700 39.130 92 46 2 23 105 660 750 9.06e-12 60.5
MsG0480018876.01.T01 AT5G59680 50.000 60 30 0 35 94 661 720 1.02e-11 60.5
MsG0480018876.01.T01 AT5G59670 48.333 60 31 0 35 94 645 704 1.07e-11 60.5
MsG0480018876.01.T01 AT5G59670 48.333 60 31 0 35 94 645 704 1.07e-11 60.5
MsG0480018876.01.T01 AT5G47850 57.447 47 20 0 48 94 548 594 1.23e-11 60.1
MsG0480018876.01.T01 AT1G78940 41.791 67 39 0 28 94 448 514 1.44e-11 60.1
MsG0480018876.01.T01 AT1G51890 41.791 67 39 0 28 94 371 437 1.57e-11 59.7
MsG0480018876.01.T01 AT1G51890 41.791 67 39 0 28 94 643 709 1.60e-11 59.7
MsG0480018876.01.T01 AT1G51890 41.791 67 39 0 28 94 579 645 1.61e-11 59.7
MsG0480018876.01.T01 AT1G51890 41.791 67 39 0 28 94 643 709 1.62e-11 59.7
MsG0480018876.01.T01 AT3G20200 43.284 67 38 0 28 94 524 590 1.70e-11 59.7
MsG0480018876.01.T01 AT3G20200 43.284 67 38 0 28 94 524 590 1.70e-11 59.7
MsG0480018876.01.T01 AT1G78940 41.791 67 39 0 28 94 519 585 1.77e-11 59.7
MsG0480018876.01.T01 AT2G07020 47.273 55 29 0 34 88 496 550 1.83e-11 59.7
MsG0480018876.01.T01 AT3G20200 43.284 67 38 0 28 94 524 590 1.83e-11 59.7
MsG0480018876.01.T01 AT1G78940 41.791 67 39 0 28 94 519 585 1.84e-11 59.7
MsG0480018876.01.T01 AT3G20200 43.284 67 38 0 28 94 524 590 1.84e-11 59.7
MsG0480018876.01.T01 AT2G33580 44.118 68 37 1 27 94 434 500 2.10e-11 59.7
MsG0480018876.01.T01 AT3G46290 61.702 47 18 0 48 94 578 624 2.58e-11 59.3
MsG0480018876.01.T01 AT2G04300 57.447 47 20 0 48 94 635 681 3.07e-11 58.9
MsG0480018876.01.T01 AT2G04300 57.447 47 20 0 48 94 676 722 3.08e-11 58.9
MsG0480018876.01.T01 AT4G32710 45.588 68 37 0 37 104 471 538 3.32e-11 58.9
MsG0480018876.01.T01 AT5G38210 44.000 75 38 2 21 94 420 491 3.60e-11 58.9
MsG0480018876.01.T01 AT5G38210 44.000 75 38 2 21 94 426 497 3.60e-11 58.9
MsG0480018876.01.T01 AT5G38210 44.000 75 38 2 21 94 438 509 3.61e-11 58.9
MsG0480018876.01.T01 AT4G32000 41.791 67 39 0 28 94 203 269 4.03e-11 58.5
MsG0480018876.01.T01 AT4G32000 41.791 67 39 0 28 94 204 270 4.04e-11 58.5
MsG0480018876.01.T01 AT2G23450 50.909 55 26 1 34 88 428 481 4.06e-11 58.5
MsG0480018876.01.T01 AT2G23450 50.909 55 26 1 34 88 428 481 4.06e-11 58.5
MsG0480018876.01.T01 AT4G32000 41.791 67 39 0 28 94 204 270 4.35e-11 58.5
MsG0480018876.01.T01 AT3G07070 57.447 47 20 0 48 94 175 221 4.89e-11 58.5
MsG0480018876.01.T01 AT4G32000 41.791 67 39 0 28 94 246 312 5.08e-11 58.5
MsG0480018876.01.T01 AT5G59660 34.831 89 58 0 6 94 515 603 6.24e-11 58.2
MsG0480018876.01.T01 AT5G59660 34.831 89 58 0 6 94 537 625 6.25e-11 58.2
MsG0480018876.01.T01 AT5G59660 34.831 89 58 0 6 94 540 628 6.25e-11 58.2
MsG0480018876.01.T01 AT5G66790 47.273 55 29 0 34 88 394 448 6.91e-11 58.2
MsG0480018876.01.T01 AT1G16760 42.623 61 35 0 34 94 527 587 9.05e-11 57.8
MsG0480018876.01.T01 AT1G80640 40.299 67 40 0 28 94 224 290 9.26e-11 57.8

Find 21 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGCAAAGTGTCAGATTT+TGG 0.152117 4:-10965560 MsG0480018876.01.T01:CDS
CTTGACATCTCTATGGATAA+TGG 0.301631 4:+10965612 None:intergenic
TAACTTGGAAAACTCGTCTT+AGG 0.323972 4:-10965690 MsG0480018876.01.T01:CDS
AGTGCTAACATTCTCTTAGA+TGG 0.388143 4:-10965589 MsG0480018876.01.T01:CDS
TAGCACTCTTGACATCTCTA+TGG 0.397563 4:+10965605 None:intergenic
GAAGGAAATCCATACCTTCC+TGG 0.398219 4:-10966873 MsG0480018876.01.T01:CDS
TTGACATCTCTATGGATAAT+GGG 0.399039 4:+10965613 None:intergenic
AGGATAGCTGCAGAGGTAGC+TGG 0.435938 4:-10965670 MsG0480018876.01.T01:CDS
AAGTGTTTACAAGGCTTTGA+AGG 0.446150 4:-10966891 MsG0480018876.01.T01:CDS
TACCTTCCTGGAGGCTGCAC+AGG 0.464098 4:-10966861 MsG0480018876.01.T01:intron
AATCTGACACTTTGCAGTGT+TGG 0.478773 4:+10965564 None:intergenic
TACAGATGCAAGTGTTTACA+AGG 0.484621 4:-10966900 MsG0480018876.01.T01:CDS
GTAAGACGAATGATCTAACT+TGG 0.495721 4:-10965705 MsG0480018876.01.T01:CDS
GTGCAGCCTCCAGGAAGGTA+TGG 0.511055 4:+10966864 None:intergenic
GCTACTTCAGTTTGATCAAG+TGG 0.544794 4:+10965521 None:intergenic
TCTATGGATAATGGGTATTG+AGG 0.571110 4:+10965621 None:intergenic
TGAAAAGATTCAGATTATGA+CGG 0.590673 4:-10966924 MsG0480018876.01.T01:CDS
TACCTGTGCAGCCTCCAGGA+AGG 0.625485 4:+10966859 None:intergenic
TCTGAATTTCTTCGCACACA+AGG 0.631490 4:-10965727 MsG0480018876.01.T01:CDS
TCGTCTTAGGATAGCTGCAG+AGG 0.635252 4:-10965677 MsG0480018876.01.T01:CDS
GGAAATCCATACCTTCCTGG+AGG 0.721136 4:-10966870 MsG0480018876.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGATTTGATAATTAAAAA+AGG + Chr4:10966198-10966217 None:intergenic 10.0%
!! AATGAATGTAAAATACAATT+AGG + Chr4:10966081-10966100 None:intergenic 15.0%
!!! AAAAAGGTTAAATATGTTTT+TGG + Chr4:10966182-10966201 None:intergenic 15.0%
!!! AAATATATTAAACCCATTTT+TGG + Chr4:10966274-10966293 None:intergenic 15.0%
!!! TTTTCAATGTTTTTTGAATT+TGG - Chr4:10965685-10965704 MsG0480018876.01.T01:CDS 15.0%
!! AATTGAACAATTCATTAATG+AGG - Chr4:10966596-10966615 MsG0480018876.01.T01:intron 20.0%
!! CATTAATGAATTGTTCAATT+TGG + Chr4:10966596-10966615 None:intergenic 20.0%
!! TCTTCTTAATATACCAAAAA+AGG - Chr4:10966326-10966345 MsG0480018876.01.T01:intron 20.0%
!! TTCTAAATGAATCAATTATG+AGG + Chr4:10965713-10965732 None:intergenic 20.0%
!!! GGTTTAATATATTTTGATAC+AGG - Chr4:10966280-10966299 MsG0480018876.01.T01:intron 20.0%
!!! GTTGATTACACTAAATTTTT+AGG - Chr4:10965766-10965785 MsG0480018876.01.T01:intron 20.0%
!!! TAATTGATTCATTTAGAAAG+TGG - Chr4:10965715-10965734 MsG0480018876.01.T01:CDS 20.0%
! ACTACAAAAACAAAAAACAG+TGG + Chr4:10965642-10965661 None:intergenic 25.0%
! CAAATTGTAGAAACACTTTA+GGG - Chr4:10965930-10965949 MsG0480018876.01.T01:intron 25.0%
! TGAAAAAACCCATAAAAACA+TGG + Chr4:10965864-10965883 None:intergenic 25.0%
! TGAAAAGATTCAGATTATGA+CGG - Chr4:10965530-10965549 MsG0480018876.01.T01:CDS 25.0%
!!! AAATATGTTTTTGGTTCCTA+AGG + Chr4:10966173-10966192 None:intergenic 25.0%
!!! ACATTCATTTTTTTCCCAAA+TGG - Chr4:10966092-10966111 MsG0480018876.01.T01:intron 25.0%
!!! ACTAATGACCATGTTTTTAT+GGG - Chr4:10965853-10965872 MsG0480018876.01.T01:intron 25.0%
!!! CATTGGTAAATTTCCTTTTT+TGG + Chr4:10966342-10966361 None:intergenic 25.0%
!!! TACTAATGACCATGTTTTTA+TGG - Chr4:10965852-10965871 MsG0480018876.01.T01:intron 25.0%
AACAAACTCATAACCAACAA+AGG + Chr4:10966693-10966712 None:intergenic 30.0%
AGCAGCATAGATATTCTTAA+TGG + Chr4:10966229-10966248 None:intergenic 30.0%
ATACAAAGTTGACATAAGAG+TGG - Chr4:10965744-10965763 MsG0480018876.01.T01:intron 30.0%
CAATGAAAGAGAAGTTCTTT+AGG - Chr4:10966357-10966376 MsG0480018876.01.T01:intron 30.0%
CTAAAGAACTTCTCTTTCAT+TGG + Chr4:10966359-10966378 None:intergenic 30.0%
GCAAATTGTAGAAACACTTT+AGG - Chr4:10965929-10965948 MsG0480018876.01.T01:intron 30.0%
TATCAAAAAGTCCAAAACAG+TGG - Chr4:10966563-10966582 MsG0480018876.01.T01:intron 30.0%
TCAAATAAATCACAGGAATG+TGG - Chr4:10966632-10966651 MsG0480018876.01.T01:intron 30.0%
TGAACAATTCATTAATGAGG+TGG - Chr4:10966599-10966618 MsG0480018876.01.T01:intron 30.0%
TTGACATCTCTATGGATAAT+GGG + Chr4:10966844-10966863 None:intergenic 30.0%
TTGTCTCTCAAATAAATCAC+AGG - Chr4:10966625-10966644 MsG0480018876.01.T01:intron 30.0%
TTTGATGAGAGCTTAATCAT+AGG - Chr4:10966484-10966503 MsG0480018876.01.T01:intron 30.0%
!!! ATATATTTTGATACAGGAGC+AGG - Chr4:10966286-10966305 MsG0480018876.01.T01:intron 30.0%
!!! ATTTTTTTCCCAAATGGCAT+GGG - Chr4:10966098-10966117 MsG0480018876.01.T01:intron 30.0%
AGAAACAGAAGTTCCTTTGT+TGG - Chr4:10966677-10966696 MsG0480018876.01.T01:intron 35.0%
AGTACTATTGGAGTTGCATT+TGG + Chr4:10966025-10966044 None:intergenic 35.0%
AGTGCTAACATTCTCTTAGA+TGG - Chr4:10966865-10966884 MsG0480018876.01.T01:CDS 35.0%
ATGCTGCTGATATTATAGTC+TGG - Chr4:10966241-10966260 MsG0480018876.01.T01:intron 35.0%
CTTGACATCTCTATGGATAA+TGG + Chr4:10966845-10966864 None:intergenic 35.0%
GAAAATGTGAGCTATTTGAG+AGG + Chr4:10966432-10966451 None:intergenic 35.0%
GTAAGACGAATGATCTAACT+TGG - Chr4:10966749-10966768 MsG0480018876.01.T01:intron 35.0%
TAACTTGGAAAACTCGTCTT+AGG - Chr4:10966764-10966783 MsG0480018876.01.T01:intron 35.0%
TACAGATGCAAGTGTTTACA+AGG - Chr4:10965554-10965573 MsG0480018876.01.T01:CDS 35.0%
TCTGGGAACAATCCAAAAAT+GGG - Chr4:10966259-10966278 MsG0480018876.01.T01:intron 35.0%
TGCTGCTGATATTATAGTCT+GGG - Chr4:10966242-10966261 MsG0480018876.01.T01:intron 35.0%
! AAGTGTTTACAAGGCTTTGA+AGG - Chr4:10965563-10965582 MsG0480018876.01.T01:CDS 35.0%
!! AGGTTTTGGTACAGTTTCAA+AGG - Chr4:10966513-10966532 MsG0480018876.01.T01:intron 35.0%
!! TCTATGGATAATGGGTATTG+AGG + Chr4:10966836-10966855 None:intergenic 35.0%
!!! CATTTTTTTCCCAAATGGCA+TGG - Chr4:10966097-10966116 MsG0480018876.01.T01:intron 35.0%
!!! TTTTTTTCCCAAATGGCATG+GGG - Chr4:10966099-10966118 MsG0480018876.01.T01:intron 35.0%
AAGTTCTTTAGGCAGAATGG+AGG - Chr4:10966368-10966387 MsG0480018876.01.T01:intron 40.0%
AATAGTACTACCTACTGTCC+TGG - Chr4:10966036-10966055 MsG0480018876.01.T01:intron 40.0%
AATCTGACACTTTGCAGTGT+TGG + Chr4:10966893-10966912 None:intergenic 40.0%
AGGAATGTGGTCAAACTCTT+AGG - Chr4:10966645-10966664 MsG0480018876.01.T01:intron 40.0%
AGGACAGTAGGTAGTACTAT+TGG + Chr4:10966037-10966056 None:intergenic 40.0%
GAGAAGTTCTTTAGGCAGAA+TGG - Chr4:10966365-10966384 MsG0480018876.01.T01:intron 40.0%
GAGAGCTTAATCATAGGTTG+AGG - Chr4:10966490-10966509 MsG0480018876.01.T01:intron 40.0%
GCTCTCATCAAAGTTGTTAG+TGG + Chr4:10966476-10966495 None:intergenic 40.0%
GGAATGTGGTCAAACTCTTA+GGG - Chr4:10966646-10966665 MsG0480018876.01.T01:intron 40.0%
GTCTGGGAACAATCCAAAAA+TGG - Chr4:10966258-10966277 MsG0480018876.01.T01:intron 40.0%
TAGCACTCTTGACATCTCTA+TGG + Chr4:10966852-10966871 None:intergenic 40.0%
TCTGAATTTCTTCGCACACA+AGG - Chr4:10966727-10966746 MsG0480018876.01.T01:intron 40.0%
TTGCATTTGGATGAACTTGC+TGG + Chr4:10966012-10966031 None:intergenic 40.0%
! AGCTTAATCATAGGTTGAGG+AGG - Chr4:10966493-10966512 MsG0480018876.01.T01:intron 40.0%
! ATGCTTAGTTGTTGCTTACC+AGG + Chr4:10966057-10966076 None:intergenic 40.0%
!! AATCACACTTGTTTCTGTCC+AGG - Chr4:10965953-10965972 MsG0480018876.01.T01:intron 40.0%
!! ATCACACTTGTTTCTGTCCA+GGG - Chr4:10965954-10965973 MsG0480018876.01.T01:intron 40.0%
!! ATCATAGGTTGAGGAGGTTT+TGG - Chr4:10966499-10966518 MsG0480018876.01.T01:intron 40.0%
!! CACTGCAAAGTGTCAGATTT+TGG - Chr4:10966894-10966913 MsG0480018876.01.T01:CDS 40.0%
!!! AGATTTTGGAGCTTCGAGAT+TGG - Chr4:10966908-10966927 MsG0480018876.01.T01:CDS 40.0%
!!! GTTTTTGGTTCCTAAGGCTT+GGG + Chr4:10966167-10966186 None:intergenic 40.0%
!!! TGTTTTTGGTTCCTAAGGCT+TGG + Chr4:10966168-10966187 None:intergenic 40.0%
AACCGGAAAGGAACAAAGGA+AGG - Chr4:10965980-10965999 MsG0480018876.01.T01:intron 45.0%
CAATCGAACTTGAGACCTTG+AGG - Chr4:10966123-10966142 MsG0480018876.01.T01:intron 45.0%
CTCCTTCCTTTGTTCCTTTC+CGG + Chr4:10965985-10966004 None:intergenic 45.0%
GAAGGAAATCCATACCTTCC+TGG - Chr4:10965581-10965600 MsG0480018876.01.T01:CDS 45.0%
GCAGAATGGAGGTTCTATGT+TGG - Chr4:10966379-10966398 MsG0480018876.01.T01:intron 45.0%
GGAAAGGAACAAAGGAAGGA+GGG - Chr4:10965984-10966003 MsG0480018876.01.T01:intron 45.0%
! TTGTTGCTTACCAGGACAGT+AGG + Chr4:10966049-10966068 None:intergenic 45.0%
!! TCACACTTGTTTCTGTCCAG+GGG - Chr4:10965955-10965974 MsG0480018876.01.T01:intron 45.0%
!! TTGGCTTTCGTCCACTGTTT+TGG + Chr4:10966577-10966596 None:intergenic 45.0%
CGGAAAGGAACAAAGGAAGG+AGG - Chr4:10965983-10966002 MsG0480018876.01.T01:intron 50.0%
GGAAATCCATACCTTCCTGG+AGG - Chr4:10965584-10965603 MsG0480018876.01.T01:CDS 50.0%
GGCAAACCGGAAAGGAACAA+AGG - Chr4:10965976-10965995 MsG0480018876.01.T01:intron 50.0%
TCGAACTTGAGACCTTGAGG+AGG - Chr4:10966126-10966145 MsG0480018876.01.T01:intron 50.0%
TCGATTGTCCCCATGCCATT+TGG + Chr4:10966110-10966129 None:intergenic 50.0%
TCGTCTTAGGATAGCTGCAG+AGG - Chr4:10966777-10966796 MsG0480018876.01.T01:intron 50.0%
! CGATTGTCCCCATGCCATTT+GGG + Chr4:10966109-10966128 None:intergenic 50.0%
! TTTTTACCTGTGCAGCCTCC+AGG + Chr4:10965602-10965621 None:intergenic 50.0%
ACTCTCAGGTCCCAAGCCTT+AGG - Chr4:10966154-10966173 MsG0480018876.01.T01:intron 55.0%
AGGATAGCTGCAGAGGTAGC+TGG - Chr4:10966784-10966803 MsG0480018876.01.T01:intron 55.0%
GTTTCTGTCCAGGGGCAAAC+CGG - Chr4:10965963-10965982 MsG0480018876.01.T01:intron 55.0%
! TGAGAGTGTGCTCCTCCTCA+AGG + Chr4:10966141-10966160 None:intergenic 55.0%
! TTGAGGAGGAGCACACTCTC+AGG - Chr4:10966140-10966159 MsG0480018876.01.T01:intron 55.0%
GTGCAGCCTCCAGGAAGGTA+TGG + Chr4:10965593-10965612 None:intergenic 60.0%
TACCTGTGCAGCCTCCAGGA+AGG + Chr4:10965598-10965617 None:intergenic 60.0%
TACCTTCCTGGAGGCTGCAC+AGG - Chr4:10965593-10965612 MsG0480018876.01.T01:CDS 60.0%
TGTCCAGGGGCAAACCGGAA+AGG - Chr4:10965968-10965987 MsG0480018876.01.T01:intron 60.0%
! GTTCCTTTCCGGTTTGCCCC+TGG + Chr4:10965974-10965993 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 10965522 10966954 10965522 ID=MsG0480018876.01;Name=MsG0480018876.01
Chr4 mRNA 10965522 10966954 10965522 ID=MsG0480018876.01.T01;Parent=MsG0480018876.01;Name=MsG0480018876.01.T01;_AED=0.50;_eAED=0.64;_QI=0|0|0|1|1|1|2|0|110
Chr4 exon 10966862 10966954 10966862 ID=MsG0480018876.01.T01:exon:6924;Parent=MsG0480018876.01.T01
Chr4 exon 10965522 10965761 10965522 ID=MsG0480018876.01.T01:exon:6923;Parent=MsG0480018876.01.T01
Chr4 CDS 10966862 10966954 10966862 ID=MsG0480018876.01.T01:cds;Parent=MsG0480018876.01.T01
Chr4 CDS 10965522 10965761 10965522 ID=MsG0480018876.01.T01:cds;Parent=MsG0480018876.01.T01
Gene Sequence

>MsG0480018876.01.T01

ATGTGTGTTGAAAAGATTCAGATTATGACGGTTACAGATGCAAGTGTTTACAAGGCTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGCAATGTACTCTTTCTGAATTTCTTCGCACACAAGGTAAGACGAATGATCTAACTTGGAAAACTCGTCTTAGGATAGCTGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCAGCTGCCTCAATACCCATTATCCATAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCAAAGTGTCAGATTTTGGAGCTTCGAGATTGGTTCCACTTGATCAAACTGAAGTAG
Protein sequence

>MsG0480018876.01.T01

MCVEKIQIMTVTDASVYKALKEIHTFLEAAQQCTLSEFLRTQGKTNDLTWKTRLRIAAEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKCQILELRDWFHLIKLK*