Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018999.01.T01 | XP_013455007.2 | 82.109 | 313 | 42 | 3 | 1 | 300 | 1 | 312 | 0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018999.01.T01 | Q8H7S7 | 36.667 | 240 | 108 | 4 | 13 | 208 | 15 | 254 | 6.68E-42 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018999.01.T01 | A0A396I0H3 | 82.109 | 313 | 42 | 3 | 1 | 300 | 1 | 312 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480018999.01.T01 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018999.01.T01 | MTR_4g021760 | 81.150 | 313 | 45 | 3 | 1 | 300 | 1 | 312 | 0.0 | 513 |
| MsG0480018999.01.T01 | MTR_4g021855 | 68.333 | 240 | 64 | 1 | 1 | 228 | 1 | 240 | 5.85e-114 | 331 |
| MsG0480018999.01.T01 | MTR_4g021845 | 73.733 | 217 | 45 | 1 | 1 | 205 | 1 | 217 | 8.11e-114 | 328 |
| MsG0480018999.01.T01 | MTR_4g021790 | 66.667 | 240 | 68 | 1 | 1 | 228 | 1 | 240 | 4.11e-108 | 315 |
| MsG0480018999.01.T01 | MTR_5g055260 | 59.908 | 217 | 72 | 3 | 1 | 217 | 1 | 202 | 1.95e-85 | 257 |
| MsG0480018999.01.T01 | MTR_4g023980 | 75.397 | 126 | 31 | 0 | 55 | 180 | 35 | 160 | 1.17e-65 | 204 |
| MsG0480018999.01.T01 | MTR_6g045327 | 41.967 | 305 | 143 | 10 | 1 | 283 | 1 | 293 | 2.93e-57 | 189 |
| MsG0480018999.01.T01 | MTR_1g032570 | 32.500 | 360 | 167 | 7 | 13 | 296 | 14 | 373 | 1.67e-53 | 184 |
| MsG0480018999.01.T01 | MTR_8g093040 | 44.541 | 229 | 104 | 7 | 1 | 217 | 1 | 218 | 1.37e-46 | 158 |
| MsG0480018999.01.T01 | MTR_3g086100 | 36.864 | 236 | 109 | 4 | 13 | 208 | 16 | 251 | 8.81e-45 | 160 |
| MsG0480018999.01.T01 | MTR_8g079940 | 34.874 | 238 | 117 | 3 | 9 | 208 | 24 | 261 | 1.05e-44 | 159 |
| MsG0480018999.01.T01 | MTR_8g105600 | 39.648 | 227 | 105 | 3 | 14 | 208 | 13 | 239 | 2.28e-43 | 156 |
| MsG0480018999.01.T01 | MTR_2g034960 | 37.500 | 232 | 109 | 3 | 13 | 208 | 32 | 263 | 2.82e-43 | 156 |
| MsG0480018999.01.T01 | MTR_4g121020 | 36.325 | 234 | 111 | 3 | 13 | 208 | 34 | 267 | 3.33e-43 | 157 |
| MsG0480018999.01.T01 | MTR_4g121020 | 36.325 | 234 | 111 | 3 | 13 | 208 | 34 | 267 | 3.55e-43 | 157 |
| MsG0480018999.01.T01 | MTR_6g016850 | 42.767 | 159 | 88 | 2 | 14 | 169 | 13 | 171 | 1.24e-38 | 134 |
| MsG0480018999.01.T01 | MTR_4g131600 | 32.922 | 243 | 128 | 5 | 13 | 220 | 23 | 265 | 9.74e-37 | 138 |
| MsG0480018999.01.T01 | MTR_7g117705 | 32.281 | 285 | 148 | 7 | 13 | 255 | 8 | 289 | 4.28e-36 | 135 |
| MsG0480018999.01.T01 | MTR_1g013170 | 34.746 | 236 | 114 | 4 | 13 | 208 | 8 | 243 | 6.00e-36 | 135 |
| MsG0480018999.01.T01 | MTR_1g013180 | 31.707 | 287 | 156 | 5 | 13 | 259 | 159 | 445 | 4.07e-35 | 134 |
| MsG0480018999.01.T01 | MTR_3g106220 | 34.583 | 240 | 113 | 4 | 13 | 208 | 11 | 250 | 1.63e-34 | 132 |
| MsG0480018999.01.T01 | MTR_4g131570 | 29.555 | 247 | 134 | 5 | 13 | 219 | 20 | 266 | 1.49e-31 | 124 |
| MsG0480018999.01.T01 | MTR_1g032570 | 28.618 | 304 | 142 | 6 | 68 | 296 | 1 | 304 | 4.34e-31 | 122 |
| MsG0480018999.01.T01 | MTR_4g131580 | 29.508 | 244 | 135 | 5 | 13 | 219 | 20 | 263 | 2.12e-30 | 120 |
| MsG0480018999.01.T01 | MTR_3g102590 | 35.714 | 210 | 96 | 5 | 13 | 208 | 11 | 195 | 9.76e-30 | 113 |
| MsG0480018999.01.T01 | MTR_2g450070 | 29.762 | 252 | 128 | 5 | 13 | 215 | 21 | 272 | 1.86e-29 | 118 |
| MsG0480018999.01.T01 | MTR_2g450070 | 29.762 | 252 | 128 | 5 | 13 | 215 | 21 | 272 | 2.19e-29 | 118 |
| MsG0480018999.01.T01 | MTR_3g102590 | 34.783 | 207 | 96 | 5 | 13 | 205 | 11 | 192 | 2.52e-27 | 105 |
| MsG0480018999.01.T01 | MTR_3g102600 | 33.981 | 206 | 110 | 5 | 4 | 208 | 4 | 184 | 3.79e-27 | 106 |
| MsG0480018999.01.T01 | MTR_3g086100 | 34.444 | 180 | 79 | 3 | 68 | 208 | 1 | 180 | 2.41e-26 | 108 |
| MsG0480018999.01.T01 | MTR_3g102600 | 32.536 | 209 | 115 | 5 | 4 | 211 | 4 | 187 | 5.93e-26 | 102 |
| MsG0480018999.01.T01 | MTR_0450s0040 | 29.018 | 224 | 130 | 5 | 14 | 213 | 8 | 226 | 2.40e-22 | 95.5 |
| MsG0480018999.01.T01 | MTR_7g026400 | 27.442 | 215 | 111 | 5 | 54 | 235 | 32 | 234 | 2.66e-20 | 91.3 |
| MsG0480018999.01.T01 | MTR_3g102600 | 32.903 | 155 | 81 | 3 | 54 | 208 | 4 | 135 | 1.02e-19 | 85.1 |
| MsG0480018999.01.T01 | MTR_4g121020 | 34.177 | 158 | 67 | 3 | 88 | 208 | 6 | 163 | 9.00e-19 | 86.7 |
| MsG0480018999.01.T01 | MTR_3g102600 | 30.380 | 158 | 87 | 3 | 54 | 211 | 4 | 138 | 2.41e-18 | 80.1 |
| MsG0480018999.01.T01 | MTR_1g013160 | 40.299 | 67 | 40 | 0 | 71 | 137 | 1 | 67 | 7.82e-12 | 62.8 |
| MsG0480018999.01.T01 | MTR_8g024260 | 28.689 | 122 | 83 | 2 | 14 | 131 | 36 | 157 | 1.86e-11 | 65.1 |
| MsG0480018999.01.T01 | MTR_7g118260 | 26.515 | 132 | 92 | 3 | 14 | 140 | 14 | 145 | 8.97e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018999.01.T01 | AT1G67710 | 37.131 | 237 | 108 | 4 | 13 | 208 | 10 | 246 | 8.84e-44 | 156 |
| MsG0480018999.01.T01 | AT2G01760 | 34.510 | 255 | 116 | 6 | 13 | 218 | 10 | 262 | 1.68e-41 | 147 |
| MsG0480018999.01.T01 | AT3G16857 | 35.039 | 254 | 107 | 6 | 13 | 208 | 36 | 289 | 1.64e-37 | 141 |
| MsG0480018999.01.T01 | AT3G16857 | 35.039 | 254 | 107 | 6 | 13 | 208 | 36 | 289 | 1.84e-37 | 141 |
| MsG0480018999.01.T01 | AT2G01760 | 31.095 | 283 | 116 | 7 | 13 | 218 | 10 | 290 | 1.02e-35 | 133 |
| MsG0480018999.01.T01 | AT4G31920 | 33.198 | 247 | 136 | 7 | 13 | 234 | 16 | 258 | 1.15e-34 | 132 |
| MsG0480018999.01.T01 | AT2G25180 | 32.328 | 232 | 121 | 4 | 13 | 208 | 16 | 247 | 8.03e-32 | 124 |
| MsG0480018999.01.T01 | AT5G58080 | 33.621 | 232 | 116 | 6 | 13 | 208 | 17 | 246 | 3.26e-27 | 111 |
| MsG0480018999.01.T01 | AT3G16857 | 33.028 | 218 | 88 | 6 | 49 | 208 | 2 | 219 | 2.47e-26 | 108 |
| MsG0480018999.01.T01 | AT1G67710 | 35.359 | 181 | 77 | 3 | 68 | 208 | 1 | 181 | 4.82e-25 | 104 |
| MsG0480018999.01.T01 | AT2G01760 | 31.156 | 199 | 87 | 5 | 68 | 218 | 1 | 197 | 3.81e-24 | 100 |
| MsG0480018999.01.T01 | AT1G49190 | 27.119 | 236 | 129 | 5 | 16 | 208 | 36 | 271 | 5.56e-20 | 89.7 |
| MsG0480018999.01.T01 | AT3G62670 | 25.820 | 244 | 144 | 6 | 6 | 214 | 33 | 274 | 7.56e-19 | 86.7 |
| MsG0480018999.01.T01 | AT5G49240 | 25.105 | 239 | 134 | 4 | 9 | 205 | 37 | 272 | 3.56e-18 | 83.2 |
| MsG0480018999.01.T01 | AT1G49190 | 31.933 | 119 | 80 | 1 | 16 | 133 | 36 | 154 | 5.87e-15 | 75.5 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.04e-12 | 67.4 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.17e-12 | 67.0 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.17e-12 | 67.0 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.17e-12 | 67.0 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.51e-12 | 67.0 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.51e-12 | 67.0 |
| MsG0480018999.01.T01 | AT5G60100 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.51e-12 | 67.0 |
| MsG0480018999.01.T01 | AT5G24470 | 27.778 | 126 | 81 | 3 | 13 | 131 | 49 | 171 | 9.83e-12 | 65.9 |
Find 54 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4:+13116970 | MsG0480018999.01.T01:CDS |
| GTGTAATCGATGCAATTATA+AGG | 0.312923 | 4:+13116150 | MsG0480018999.01.T01:CDS |
| ACATCTCCTCGACGAAATTA+AGG | 0.321564 | 4:-13116129 | None:intergenic |
| CAACAACATTGGGTGGAAAT+TGG | 0.345706 | 4:+13117634 | MsG0480018999.01.T01:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.373812 | 4:-13116390 | None:intergenic |
| CGAATATTGGACCAAGCCTT+TGG | 0.374007 | 4:+13116578 | MsG0480018999.01.T01:CDS |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4:-13117706 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.387677 | 4:+13116565 | MsG0480018999.01.T01:CDS |
| CATCTTACCTCTTGTCTCAT+CGG | 0.413533 | 4:-13117485 | None:intergenic |
| ATCAGAAGCCATGCTACATT+TGG | 0.418312 | 4:-13116281 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.418636 | 4:+13116748 | MsG0480018999.01.T01:CDS |
| GTTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4:+13116689 | MsG0480018999.01.T01:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4:-13116305 | None:intergenic |
| TGGCAACATGTTATAAGAAA+AGG | 0.422808 | 4:+13116624 | MsG0480018999.01.T01:CDS |
| TGATGGTTTGTCGGTGAAAA+GGG | 0.427097 | 4:-13116059 | None:intergenic |
| AAAAGTGTTGCTCATAATGT+TGG | 0.434928 | 4:-13117662 | None:intergenic |
| CAGAATTATGAAGAAAACTT+TGG | 0.439068 | 4:-13117582 | None:intergenic |
| ATATGAAATTGTTGGAAGCT+TGG | 0.446291 | 4:+13116665 | MsG0480018999.01.T01:CDS |
| AAAAGAAACACTTGCAAAGA+AGG | 0.446990 | 4:+13116734 | MsG0480018999.01.T01:CDS |
| TCAACATATGGGAACAAGTT+GGG | 0.453000 | 4:-13117694 | None:intergenic |
| ATGATGGTTTGTCGGTGAAA+AGG | 0.455733 | 4:-13116060 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4:+13116306 | MsG0480018999.01.T01:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4:-13116418 | None:intergenic |
| TTCTCGCGACCAAGACAAAC+GGG | 0.470376 | 4:-13116757 | None:intergenic |
| TTGCAATGCACAACAACATT+GGG | 0.475265 | 4:+13117624 | MsG0480018999.01.T01:CDS |
| TGTAATCGATGCAATTATAA+GGG | 0.476930 | 4:+13116151 | MsG0480018999.01.T01:CDS |
| TTGAGACCTTCTGATAATGA+TGG | 0.479264 | 4:-13116076 | None:intergenic |
| TACTCACTCAATACCGGAGC+AGG | 0.481604 | 4:+13117558 | MsG0480018999.01.T01:CDS |
| TTCTGATAATGATGGTTTGT+CGG | 0.493949 | 4:-13116068 | None:intergenic |
| AAGTCGTAAACATCCATGTT+TGG | 0.494866 | 4:-13116364 | None:intergenic |
| TGTTTCAAGAAAATAGAAAA+CGG | 0.510078 | 4:+13116688 | MsG0480018999.01.T01:CDS |
| ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4:+13116549 | MsG0480018999.01.T01:CDS |
| AAGCTAAATTGTGTTTCAAG+AGG | 0.513615 | 4:-13117526 | None:intergenic |
| AGAAAACTTTGGTCCTGCTC+CGG | 0.527471 | 4:-13117571 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4:+13116297 | MsG0480018999.01.T01:CDS |
| TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4:+13116550 | MsG0480018999.01.T01:CDS |
| AAAACGAACCTGTAAATGGC+TGG | 0.538065 | 4:-13116978 | None:intergenic |
| TTCAGTTACCAAATGTAGCA+TGG | 0.538628 | 4:+13116273 | MsG0480018999.01.T01:intron |
| ATTGCAATGCACAACAACAT+TGG | 0.541421 | 4:+13117623 | MsG0480018999.01.T01:CDS |
| ATTCTCGCGACCAAGACAAA+CGG | 0.543227 | 4:-13116758 | None:intergenic |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4:-13117705 | None:intergenic |
| ATCAACATATGGGAACAAGT+TGG | 0.552596 | 4:-13117695 | None:intergenic |
| AGAAGCTACTCACTCAATAC+CGG | 0.567403 | 4:+13117552 | MsG0480018999.01.T01:CDS |
| ATCATTATCAGAAGGTCTCA+AGG | 0.582734 | 4:+13116078 | MsG0480018999.01.T01:CDS |
| CAATGCACAACAACATTGGG+TGG | 0.593262 | 4:+13117627 | MsG0480018999.01.T01:CDS |
| AGAACTTTCTGCAGAATCAA+CGG | 0.593830 | 4:-13116526 | None:intergenic |
| TCTTATAACATGTTGCCACA+TGG | 0.594344 | 4:-13116619 | None:intergenic |
| TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4:+13116551 | MsG0480018999.01.T01:CDS |
| TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4:+13116351 | MsG0480018999.01.T01:CDS |
| CACTCTCCTTAATTTCGTCG+AGG | 0.625060 | 4:+13116123 | MsG0480018999.01.T01:CDS |
| GACAAACCATCATTATCAGA+AGG | 0.636966 | 4:+13116070 | MsG0480018999.01.T01:CDS |
| AGCTCAACCGATGAGACAAG+AGG | 0.641822 | 4:+13117478 | MsG0480018999.01.T01:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4:+13117719 | MsG0480018999.01.T01:CDS |
| TTTCAAGAAAATAGAAAACG+GGG | 0.722642 | 4:+13116690 | MsG0480018999.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATATGAAATTGT+TGG | + | Chr4:13116657-13116676 | MsG0480018999.01.T01:CDS | 15.0% |
| !! | AACATAGTAAAAAAGTAATT+AGG | - | Chr4:13116841-13116860 | None:intergenic | 15.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | Chr4:13116421-13116440 | None:intergenic | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | Chr4:13117708-13117727 | None:intergenic | 20.0% |
| !! | ATAGATGAAAACTTTGAATA+AGG | - | Chr4:13116194-13116213 | None:intergenic | 20.0% |
| !! | TGAAAAATAAGAGAAAAACA+TGG | - | Chr4:13116895-13116914 | None:intergenic | 20.0% |
| !! | TGATTGTAAACTGAAATTTA+TGG | + | Chr4:13117389-13117408 | MsG0480018999.01.T01:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | + | Chr4:13116688-13116707 | MsG0480018999.01.T01:CDS | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | - | Chr4:13116957-13116976 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | + | Chr4:13116894-13116913 | MsG0480018999.01.T01:intron | 20.0% |
| !!! | ATTATTTCTTTTTGTAGTGA+TGG | + | Chr4:13116503-13116522 | MsG0480018999.01.T01:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | + | Chr4:13116895-13116914 | MsG0480018999.01.T01:intron | 20.0% |
| !!! | TTCAAAGTTTTCATCTATTT+TGG | + | Chr4:13116196-13116215 | MsG0480018999.01.T01:intron | 20.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | - | Chr4:13117353-13117372 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | - | Chr4:13117210-13117229 | None:intergenic | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | + | Chr4:13116549-13116568 | MsG0480018999.01.T01:CDS | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | - | Chr4:13117585-13117604 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | Chr4:13117709-13117728 | None:intergenic | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | + | Chr4:13116689-13116708 | MsG0480018999.01.T01:CDS | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | - | Chr4:13117244-13117263 | None:intergenic | 25.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | + | Chr4:13116151-13116170 | MsG0480018999.01.T01:CDS | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | + | Chr4:13116550-13116569 | MsG0480018999.01.T01:CDS | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | + | Chr4:13116690-13116709 | MsG0480018999.01.T01:CDS | 25.0% |
| !! | CAAAAAGATTCTGAAAATCA+TGG | + | Chr4:13116925-13116944 | MsG0480018999.01.T01:CDS | 25.0% |
| !! | CATGATTTTCAGAATCTTTT+TGG | - | Chr4:13116927-13116946 | None:intergenic | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | - | Chr4:13116956-13116975 | None:intergenic | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | + | Chr4:13116896-13116915 | MsG0480018999.01.T01:intron | 25.0% |
| AAAAGAAACACTTGCAAAGA+AGG | + | Chr4:13116734-13116753 | MsG0480018999.01.T01:CDS | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | - | Chr4:13117529-13117548 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | - | Chr4:13117335-13117354 | None:intergenic | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | Chr4:13116821-13116840 | None:intergenic | 30.0% | |
| ATATGAAATTGTTGGAAGCT+TGG | + | Chr4:13116665-13116684 | MsG0480018999.01.T01:CDS | 30.0% | |
| ATGATTTATCATCACTTGTG+TGG | + | Chr4:13117719-13117738 | MsG0480018999.01.T01:CDS | 30.0% | |
| GTGTAATCGATGCAATTATA+AGG | + | Chr4:13116150-13116169 | MsG0480018999.01.T01:CDS | 30.0% | |
| TACACAATTACAACAGACTT+AGG | - | Chr4:13117082-13117101 | None:intergenic | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | + | Chr4:13116551-13116570 | MsG0480018999.01.T01:CDS | 30.0% | |
| TGGCAACATGTTATAAGAAA+AGG | + | Chr4:13116624-13116643 | MsG0480018999.01.T01:CDS | 30.0% | |
| TTGTATAACATGCAAGACTA+TGG | - | Chr4:13117125-13117144 | None:intergenic | 30.0% | |
| ! | CTTTGCAAGTGTTTCTTTTA+AGG | - | Chr4:13116733-13116752 | None:intergenic | 30.0% |
| ! | TTCTGATAATGATGGTTTGT+CGG | - | Chr4:13116071-13116090 | None:intergenic | 30.0% |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | Chr4:13117665-13117684 | None:intergenic | 30.0% |
| !! | TTGAACTGTTTTTCAACCAA+AGG | - | Chr4:13116597-13116616 | None:intergenic | 30.0% |
| AAAAACAGTTCAAGACCATG+TGG | + | Chr4:13116604-13116623 | MsG0480018999.01.T01:CDS | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | - | Chr4:13117058-13117077 | None:intergenic | 35.0% | |
| AAGTCGTAAACATCCATGTT+TGG | - | Chr4:13116367-13116386 | None:intergenic | 35.0% | |
| AGAACTTTCTGCAGAATCAA+CGG | - | Chr4:13116529-13116548 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | Chr4:13117698-13117717 | None:intergenic | 35.0% | |
| ATCATTATCAGAAGGTCTCA+AGG | + | Chr4:13116078-13116097 | MsG0480018999.01.T01:CDS | 35.0% | |
| ATTGCAATGCACAACAACAT+TGG | + | Chr4:13117623-13117642 | MsG0480018999.01.T01:CDS | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | Chr4:13116306-13116325 | MsG0480018999.01.T01:CDS | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | Chr4:13116308-13116327 | None:intergenic | 35.0% | |
| GACAAACCATCATTATCAGA+AGG | + | Chr4:13116070-13116089 | MsG0480018999.01.T01:CDS | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | - | Chr4:13117697-13117716 | None:intergenic | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | - | Chr4:13116622-13116641 | None:intergenic | 35.0% | |
| TGCAAAAACGAACCTGTAAA+TGG | - | Chr4:13116985-13117004 | None:intergenic | 35.0% | |
| TTCAGTTACCAAATGTAGCA+TGG | + | Chr4:13116273-13116292 | MsG0480018999.01.T01:intron | 35.0% | |
| TTGCAATGCACAACAACATT+GGG | + | Chr4:13117624-13117643 | MsG0480018999.01.T01:CDS | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | Chr4:13116393-13116412 | None:intergenic | 35.0% |
| ! | TTGAGACCTTCTGATAATGA+TGG | - | Chr4:13116079-13116098 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | - | Chr4:13116404-13116423 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | - | Chr4:13116405-13116424 | None:intergenic | 35.0% |
| AAAACGAACCTGTAAATGGC+TGG | - | Chr4:13116981-13117000 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | - | Chr4:13117044-13117063 | None:intergenic | 40.0% | |
| ACATCTCCTCGACGAAATTA+AGG | - | Chr4:13116132-13116151 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | + | Chr4:13117552-13117571 | MsG0480018999.01.T01:CDS | 40.0% | |
| ATCAGAAGCCATGCTACATT+TGG | - | Chr4:13116284-13116303 | None:intergenic | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | + | Chr4:13117634-13117653 | MsG0480018999.01.T01:CDS | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | - | Chr4:13117191-13117210 | None:intergenic | 40.0% | |
| CATCTTACCTCTTGTCTCAT+CGG | - | Chr4:13117488-13117507 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | + | Chr4:13117165-13117184 | MsG0480018999.01.T01:intron | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | + | Chr4:13116351-13116370 | MsG0480018999.01.T01:CDS | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | Chr4:13116297-13116316 | MsG0480018999.01.T01:CDS | 40.0% | |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | - | Chr4:13116063-13116082 | None:intergenic | 40.0% |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | - | Chr4:13116062-13116081 | None:intergenic | 40.0% |
| !! | CTGTTTTTCAACCAAAGGCT+TGG | - | Chr4:13116592-13116611 | None:intergenic | 40.0% |
| AATGTGGGGCTTGCGAATAT+TGG | + | Chr4:13116565-13116584 | MsG0480018999.01.T01:CDS | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | + | Chr4:13116970-13116989 | MsG0480018999.01.T01:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | - | Chr4:13117574-13117593 | None:intergenic | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | + | Chr4:13117169-13117188 | MsG0480018999.01.T01:intron | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | - | Chr4:13116761-13116780 | None:intergenic | 45.0% | |
| CAATGCACAACAACATTGGG+TGG | + | Chr4:13117627-13117646 | MsG0480018999.01.T01:CDS | 45.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | + | Chr4:13116123-13116142 | MsG0480018999.01.T01:CDS | 45.0% | |
| CGAATATTGGACCAAGCCTT+TGG | + | Chr4:13116578-13116597 | MsG0480018999.01.T01:CDS | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | + | Chr4:13116795-13116814 | MsG0480018999.01.T01:intron | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | + | Chr4:13117038-13117057 | MsG0480018999.01.T01:intron | 45.0% | |
| AGCTCAACCGATGAGACAAG+AGG | + | Chr4:13117478-13117497 | MsG0480018999.01.T01:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | Chr4:13116748-13116767 | MsG0480018999.01.T01:CDS | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | + | Chr4:13117558-13117577 | MsG0480018999.01.T01:CDS | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | - | Chr4:13116760-13116779 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 13116055 | 13117744 | 13116055 | ID=MsG0480018999.01;Name=MsG0480018999.01 |
| Chr4 | mRNA | 13116055 | 13117744 | 13116055 | ID=MsG0480018999.01.T01;Parent=MsG0480018999.01;Name=MsG0480018999.01.T01;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|300 |
| Chr4 | exon | 13116055 | 13116172 | 13116055 | ID=MsG0480018999.01.T01:exon:8153;Parent=MsG0480018999.01.T01 |
| Chr4 | exon | 13116278 | 13116427 | 13116278 | ID=MsG0480018999.01.T01:exon:8154;Parent=MsG0480018999.01.T01 |
| Chr4 | exon | 13116520 | 13116790 | 13116520 | ID=MsG0480018999.01.T01:exon:8155;Parent=MsG0480018999.01.T01 |
| Chr4 | exon | 13116916 | 13116991 | 13116916 | ID=MsG0480018999.01.T01:exon:8156;Parent=MsG0480018999.01.T01 |
| Chr4 | exon | 13117457 | 13117744 | 13117457 | ID=MsG0480018999.01.T01:exon:8157;Parent=MsG0480018999.01.T01 |
| Chr4 | CDS | 13116055 | 13116172 | 13116055 | ID=MsG0480018999.01.T01:cds;Parent=MsG0480018999.01.T01 |
| Chr4 | CDS | 13116278 | 13116427 | 13116278 | ID=MsG0480018999.01.T01:cds;Parent=MsG0480018999.01.T01 |
| Chr4 | CDS | 13116520 | 13116790 | 13116520 | ID=MsG0480018999.01.T01:cds;Parent=MsG0480018999.01.T01 |
| Chr4 | CDS | 13116916 | 13116991 | 13116916 | ID=MsG0480018999.01.T01:cds;Parent=MsG0480018999.01.T01 |
| Chr4 | CDS | 13117457 | 13117744 | 13117457 | ID=MsG0480018999.01.T01:cds;Parent=MsG0480018999.01.T01 |
| Gene Sequence |
| Protein sequence |
