Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019003.01.T01 | KEH29059.1 | 86.636 | 217 | 29 | 0 | 1 | 217 | 1 | 217 | 5.48E-136 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019003.01.T01 | A2XE31 | 39.506 | 243 | 109 | 4 | 10 | 217 | 12 | 251 | 3.61E-48 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019003.01.T01 | A0A072UH21 | 86.636 | 217 | 29 | 0 | 1 | 217 | 1 | 217 | 2.62e-136 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480019003.01.T01 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019003.01.T01 | MTR_4g021790 | 86.636 | 217 | 29 | 0 | 1 | 217 | 1 | 217 | 6.64e-140 | 392 |
| MsG0480019003.01.T01 | MTR_4g021855 | 85.714 | 217 | 31 | 0 | 1 | 217 | 1 | 217 | 1.09e-137 | 388 |
| MsG0480019003.01.T01 | MTR_4g021845 | 81.364 | 220 | 41 | 0 | 1 | 220 | 1 | 220 | 4.01e-133 | 373 |
| MsG0480019003.01.T01 | MTR_4g021760 | 77.982 | 218 | 47 | 1 | 1 | 217 | 1 | 218 | 9.44e-126 | 358 |
| MsG0480019003.01.T01 | MTR_5g055260 | 63.134 | 217 | 53 | 4 | 1 | 217 | 1 | 190 | 3.39e-89 | 263 |
| MsG0480019003.01.T01 | MTR_4g023980 | 75.912 | 137 | 33 | 0 | 55 | 191 | 35 | 171 | 6.82e-76 | 227 |
| MsG0480019003.01.T01 | MTR_1g032570 | 45.600 | 250 | 99 | 4 | 2 | 217 | 3 | 249 | 1.75e-64 | 211 |
| MsG0480019003.01.T01 | MTR_6g045327 | 45.238 | 210 | 111 | 3 | 10 | 217 | 14 | 221 | 1.53e-51 | 171 |
| MsG0480019003.01.T01 | MTR_4g121020 | 40.167 | 239 | 113 | 3 | 7 | 217 | 28 | 264 | 7.48e-51 | 175 |
| MsG0480019003.01.T01 | MTR_4g121020 | 40.167 | 239 | 113 | 3 | 7 | 217 | 28 | 264 | 7.56e-51 | 175 |
| MsG0480019003.01.T01 | MTR_8g105600 | 42.544 | 228 | 111 | 2 | 10 | 217 | 9 | 236 | 2.10e-50 | 172 |
| MsG0480019003.01.T01 | MTR_2g034960 | 40.426 | 235 | 116 | 2 | 7 | 217 | 26 | 260 | 1.56e-49 | 171 |
| MsG0480019003.01.T01 | MTR_3g086100 | 40.678 | 236 | 112 | 5 | 10 | 217 | 13 | 248 | 5.42e-49 | 169 |
| MsG0480019003.01.T01 | MTR_8g079940 | 39.149 | 235 | 117 | 4 | 9 | 217 | 24 | 258 | 1.03e-47 | 164 |
| MsG0480019003.01.T01 | MTR_6g016850 | 44.172 | 163 | 88 | 2 | 10 | 169 | 9 | 171 | 1.80e-43 | 144 |
| MsG0480019003.01.T01 | MTR_4g131600 | 37.229 | 231 | 122 | 4 | 10 | 217 | 20 | 250 | 2.20e-42 | 151 |
| MsG0480019003.01.T01 | MTR_8g093040 | 41.981 | 212 | 108 | 5 | 1 | 206 | 1 | 203 | 1.07e-40 | 140 |
| MsG0480019003.01.T01 | MTR_1g013170 | 36.864 | 236 | 121 | 3 | 10 | 217 | 5 | 240 | 1.13e-40 | 145 |
| MsG0480019003.01.T01 | MTR_3g106220 | 36.214 | 243 | 117 | 4 | 10 | 217 | 8 | 247 | 4.42e-40 | 145 |
| MsG0480019003.01.T01 | MTR_1g032570 | 43.169 | 183 | 68 | 3 | 68 | 217 | 1 | 180 | 7.81e-40 | 144 |
| MsG0480019003.01.T01 | MTR_7g117705 | 33.051 | 236 | 130 | 3 | 10 | 217 | 5 | 240 | 4.15e-39 | 140 |
| MsG0480019003.01.T01 | MTR_1g013180 | 33.603 | 247 | 133 | 4 | 10 | 225 | 156 | 402 | 7.80e-38 | 139 |
| MsG0480019003.01.T01 | MTR_4g131570 | 33.898 | 236 | 128 | 4 | 10 | 217 | 17 | 252 | 9.89e-37 | 135 |
| MsG0480019003.01.T01 | MTR_4g131580 | 33.476 | 233 | 130 | 3 | 10 | 217 | 17 | 249 | 1.38e-35 | 132 |
| MsG0480019003.01.T01 | MTR_2g450070 | 31.837 | 245 | 130 | 4 | 10 | 217 | 18 | 262 | 1.82e-34 | 130 |
| MsG0480019003.01.T01 | MTR_2g450070 | 31.837 | 245 | 130 | 4 | 10 | 217 | 18 | 262 | 2.02e-34 | 129 |
| MsG0480019003.01.T01 | MTR_3g102590 | 34.722 | 216 | 114 | 4 | 7 | 220 | 5 | 195 | 9.18e-34 | 120 |
| MsG0480019003.01.T01 | MTR_3g102600 | 33.333 | 216 | 108 | 2 | 7 | 221 | 5 | 185 | 1.44e-33 | 119 |
| MsG0480019003.01.T01 | MTR_3g102590 | 34.742 | 213 | 112 | 4 | 7 | 217 | 5 | 192 | 1.78e-32 | 118 |
| MsG0480019003.01.T01 | MTR_3g102600 | 33.491 | 212 | 105 | 2 | 7 | 217 | 5 | 181 | 4.49e-32 | 117 |
| MsG0480019003.01.T01 | MTR_3g086100 | 39.548 | 177 | 80 | 4 | 68 | 217 | 1 | 177 | 1.84e-31 | 120 |
| MsG0480019003.01.T01 | MTR_7g026400 | 36.548 | 197 | 92 | 5 | 45 | 217 | 19 | 206 | 6.80e-28 | 111 |
| MsG0480019003.01.T01 | MTR_3g102600 | 32.941 | 170 | 79 | 1 | 52 | 221 | 2 | 136 | 3.44e-26 | 99.0 |
| MsG0480019003.01.T01 | MTR_0450s0040 | 29.493 | 217 | 138 | 3 | 12 | 217 | 6 | 218 | 2.69e-25 | 101 |
| MsG0480019003.01.T01 | MTR_3g102600 | 33.133 | 166 | 76 | 1 | 52 | 217 | 2 | 132 | 6.63e-25 | 97.1 |
| MsG0480019003.01.T01 | MTR_4g121020 | 37.419 | 155 | 72 | 1 | 88 | 217 | 6 | 160 | 1.02e-22 | 96.3 |
| MsG0480019003.01.T01 | MTR_1g013160 | 31.757 | 148 | 74 | 2 | 71 | 191 | 1 | 148 | 3.56e-16 | 73.6 |
| MsG0480019003.01.T01 | MTR_5g041350 | 58.824 | 51 | 20 | 1 | 168 | 217 | 15 | 65 | 4.07e-14 | 70.9 |
| MsG0480019003.01.T01 | MTR_2g016220 | 45.333 | 75 | 35 | 2 | 153 | 221 | 69 | 143 | 1.33e-13 | 69.3 |
| MsG0480019003.01.T01 | MTR_6g032990 | 58.824 | 51 | 20 | 1 | 168 | 217 | 42 | 92 | 2.90e-13 | 68.6 |
| MsG0480019003.01.T01 | MTR_2g016220 | 44.156 | 77 | 37 | 2 | 153 | 223 | 69 | 145 | 1.25e-12 | 66.6 |
| MsG0480019003.01.T01 | MTR_2g016220 | 44.156 | 77 | 37 | 2 | 153 | 223 | 69 | 145 | 1.40e-12 | 66.2 |
| MsG0480019003.01.T01 | MTR_2g086450 | 56.863 | 51 | 21 | 1 | 168 | 217 | 45 | 95 | 1.78e-12 | 66.2 |
| MsG0480019003.01.T01 | MTR_7g115530 | 55.357 | 56 | 24 | 1 | 168 | 222 | 218 | 273 | 4.20e-12 | 64.3 |
| MsG0480019003.01.T01 | MTR_0223s0040 | 50.000 | 54 | 26 | 1 | 166 | 218 | 16 | 69 | 6.46e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019003.01.T01 | AT2G01760 | 40.329 | 243 | 110 | 5 | 10 | 217 | 7 | 249 | 3.47e-50 | 168 |
| MsG0480019003.01.T01 | AT3G16857 | 37.795 | 254 | 112 | 4 | 10 | 217 | 33 | 286 | 9.80e-45 | 158 |
| MsG0480019003.01.T01 | AT1G67710 | 39.407 | 236 | 114 | 4 | 11 | 217 | 8 | 243 | 1.02e-44 | 156 |
| MsG0480019003.01.T01 | AT3G16857 | 37.795 | 254 | 112 | 4 | 10 | 217 | 33 | 286 | 1.32e-44 | 158 |
| MsG0480019003.01.T01 | AT2G01760 | 36.162 | 271 | 110 | 6 | 10 | 217 | 7 | 277 | 3.61e-44 | 153 |
| MsG0480019003.01.T01 | AT4G31920 | 37.179 | 234 | 126 | 6 | 10 | 225 | 13 | 243 | 5.96e-40 | 144 |
| MsG0480019003.01.T01 | AT2G25180 | 35.776 | 232 | 125 | 3 | 10 | 217 | 13 | 244 | 3.82e-38 | 139 |
| MsG0480019003.01.T01 | AT5G58080 | 35.745 | 235 | 119 | 6 | 10 | 217 | 14 | 243 | 1.75e-33 | 127 |
| MsG0480019003.01.T01 | AT3G16857 | 36.279 | 215 | 91 | 4 | 49 | 217 | 2 | 216 | 1.27e-32 | 124 |
| MsG0480019003.01.T01 | AT5G49240 | 31.950 | 241 | 137 | 5 | 7 | 220 | 35 | 275 | 5.39e-32 | 118 |
| MsG0480019003.01.T01 | AT2G01760 | 38.587 | 184 | 79 | 4 | 68 | 217 | 1 | 184 | 3.05e-30 | 114 |
| MsG0480019003.01.T01 | AT3G62670 | 30.317 | 221 | 130 | 6 | 27 | 224 | 52 | 271 | 1.91e-29 | 114 |
| MsG0480019003.01.T01 | AT1G67710 | 38.764 | 178 | 81 | 3 | 68 | 217 | 1 | 178 | 1.35e-27 | 109 |
| MsG0480019003.01.T01 | AT1G49190 | 28.452 | 239 | 140 | 5 | 10 | 217 | 30 | 268 | 6.39e-26 | 104 |
| MsG0480019003.01.T01 | AT1G67710 | 37.342 | 158 | 71 | 3 | 88 | 217 | 12 | 169 | 2.14e-19 | 86.3 |
| MsG0480019003.01.T01 | AT5G07210 | 27.132 | 258 | 132 | 8 | 14 | 217 | 16 | 271 | 4.54e-19 | 85.9 |
| MsG0480019003.01.T01 | AT5G07210 | 26.316 | 266 | 132 | 9 | 14 | 217 | 16 | 279 | 1.33e-16 | 78.6 |
| MsG0480019003.01.T01 | AT1G49190 | 31.200 | 125 | 85 | 1 | 10 | 133 | 30 | 154 | 3.23e-16 | 77.4 |
| MsG0480019003.01.T01 | AT5G29000 | 41.758 | 91 | 45 | 3 | 128 | 217 | 198 | 281 | 1.76e-13 | 68.6 |
| MsG0480019003.01.T01 | AT5G29000 | 34.959 | 123 | 65 | 4 | 103 | 217 | 123 | 238 | 1.93e-13 | 68.9 |
| MsG0480019003.01.T01 | AT5G29000 | 34.959 | 123 | 65 | 4 | 103 | 217 | 123 | 238 | 1.93e-13 | 68.9 |
| MsG0480019003.01.T01 | AT5G29000 | 41.758 | 91 | 45 | 3 | 128 | 217 | 198 | 281 | 2.03e-13 | 68.9 |
| MsG0480019003.01.T01 | AT3G04030 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 2.75e-13 | 68.6 |
| MsG0480019003.01.T01 | AT3G04030 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 2.87e-13 | 68.6 |
| MsG0480019003.01.T01 | AT5G18240 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 6.01e-13 | 67.4 |
| MsG0480019003.01.T01 | AT5G18240 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 6.01e-13 | 67.4 |
| MsG0480019003.01.T01 | AT5G18240 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 6.15e-13 | 67.4 |
| MsG0480019003.01.T01 | AT5G18240 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 6.15e-13 | 67.4 |
| MsG0480019003.01.T01 | AT5G18240 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 6.36e-13 | 67.4 |
| MsG0480019003.01.T01 | AT3G04030 | 54.000 | 50 | 23 | 0 | 168 | 217 | 45 | 94 | 3.26e-12 | 65.5 |
| MsG0480019003.01.T01 | AT2G01060 | 50.000 | 62 | 30 | 1 | 157 | 217 | 4 | 65 | 2.57e-11 | 62.4 |
| MsG0480019003.01.T01 | AT1G14600 | 58.000 | 50 | 20 | 1 | 170 | 218 | 25 | 74 | 8.13e-11 | 60.5 |
Find 52 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTTCCAACAAATTAA+AGG | 0.201740 | 4:-13171344 | None:intergenic |
| CAAAATGATTCTCAAAATTA+TGG | 0.243357 | 4:+13171960 | MsG0480019003.01.T01:CDS |
| ACATGTTGCTAGTCATTTAA+AGG | 0.246318 | 4:+13172005 | MsG0480019003.01.T01:CDS |
| AACTGCATCAACGATTTCTA+TGG | 0.292867 | 4:+13171813 | MsG0480019003.01.T01:CDS |
| CTCAAAATTATGGATGTTCC+AGG | 0.335551 | 4:+13171970 | MsG0480019003.01.T01:CDS |
| TTCTGATGCCTTTAATTTGT+TGG | 0.335924 | 4:+13171336 | MsG0480019003.01.T01:CDS |
| AATTATGGATGTTCCAGGTT+TGG | 0.345656 | 4:+13171975 | MsG0480019003.01.T01:CDS |
| CTTTAATTTGTTGGAAAGAA+AGG | 0.348441 | 4:+13171345 | MsG0480019003.01.T01:CDS |
| ATTATGGATGTTCCAGGTTT+GGG | 0.349053 | 4:+13171976 | MsG0480019003.01.T01:CDS |
| TAAGTGACTAACCTTGATAA+TGG | 0.362032 | 4:-13171178 | None:intergenic |
| AGAAATCGTTGATGCAGTTC+TGG | 0.372917 | 4:-13171809 | None:intergenic |
| TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4:-13171429 | None:intergenic |
| TACATATTGGACTAAGCCTT+TGG | 0.386876 | 4:+13171613 | MsG0480019003.01.T01:CDS |
| TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4:-13171441 | None:intergenic |
| GGTTGAAGAAAATAGAAAAC+GGG | 0.411991 | 4:+13171724 | MsG0480019003.01.T01:CDS |
| ATCAGAAGCTGTGTTACATT+TGG | 0.412873 | 4:-13171320 | None:intergenic |
| AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4:+13171692 | MsG0480019003.01.T01:CDS |
| TGCAATCGATTCCATTATCA+AGG | 0.445235 | 4:+13171167 | MsG0480019003.01.T01:CDS |
| AAGTTATAAACATCCATGTT+TGG | 0.449631 | 4:-13171403 | None:intergenic |
| TTCTGGCGACCAAGACAAAC+GGG | 0.460294 | 4:-13171792 | None:intergenic |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4:-13171457 | None:intergenic |
| ATATGAAATTGTTGGAAGCT+TGG | 0.461542 | 4:+13171700 | MsG0480019003.01.T01:CDS |
| TTGAGACCAGCAGGGAATGA+TGG | 0.464643 | 4:-13171092 | None:intergenic |
| AAAAGATACACATGCAAAGA+AGG | 0.470493 | 4:+13171769 | MsG0480019003.01.T01:CDS |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.473177 | 4:+13171783 | MsG0480019003.01.T01:CDS |
| CACTGTTCTTAACACTATTG+AGG | 0.478157 | 4:+13171139 | MsG0480019003.01.T01:CDS |
| ATCATTCCCTGCTGGTCTCA+AGG | 0.485183 | 4:+13171094 | MsG0480019003.01.T01:CDS |
| AATGTGGGGCTTGTACATAT+TGG | 0.487863 | 4:+13171600 | MsG0480019003.01.T01:CDS |
| GTTCTGGCGACCAAGACAAA+CGG | 0.493157 | 4:-13171793 | None:intergenic |
| GCAATAACCTTGAGACCAGC+AGG | 0.494358 | 4:-13171101 | None:intergenic |
| TGGCACCATGTTGCAAGAAA+CGG | 0.499982 | 4:+13171659 | MsG0480019003.01.T01:CDS |
| AACAGTGATGTCATGATCAA+TGG | 0.502328 | 4:-13171123 | None:intergenic |
| GACAGCCCATCATTCCCTGC+TGG | 0.504637 | 4:+13171086 | MsG0480019003.01.T01:CDS |
| GATGTTCCAGGTTTGGGTGT+AGG | 0.505057 | 4:+13171982 | MsG0480019003.01.T01:CDS |
| TGGTTGAAGAAAATAGAAAA+CGG | 0.506154 | 4:+13171723 | MsG0480019003.01.T01:CDS |
| TGATGGGCTGTCAACGAAAA+CGG | 0.507263 | 4:-13171075 | None:intergenic |
| ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4:+13171584 | MsG0480019003.01.T01:CDS |
| CTATGGGCTGTCAATCAACT+AGG | 0.518108 | 4:+13171830 | MsG0480019003.01.T01:CDS |
| GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4:-13171440 | None:intergenic |
| TTGAACTCTTCTTCAACCAA+AGG | 0.521847 | 4:-13171629 | None:intergenic |
| AGGAAAGAAGCATACTATCA+AGG | 0.524721 | 4:-13171853 | None:intergenic |
| TGAGACCAGCAGGGAATGAT+GGG | 0.532165 | 4:-13171091 | None:intergenic |
| TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4:+13171585 | MsG0480019003.01.T01:CDS |
| ACATGTCCTACACCCAAACC+TGG | 0.534820 | 4:-13171988 | None:intergenic |
| TGAAATTGTTGGAAGCTTGG+TGG | 0.576315 | 4:+13171703 | MsG0480019003.01.T01:CDS |
| ACTGCATCAACGATTTCTAT+GGG | 0.587946 | 4:+13171814 | MsG0480019003.01.T01:CDS |
| TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4:+13171586 | MsG0480019003.01.T01:CDS |
| TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4:+13171390 | MsG0480019003.01.T01:CDS |
| TCAAACCGTTTCTTGCAACA+TGG | 0.613360 | 4:-13171664 | None:intergenic |
| AAGAAGAGTTCAAGATCATG+TGG | 0.629722 | 4:+13171639 | MsG0480019003.01.T01:CDS |
| CAATAACCTTGAGACCAGCA+GGG | 0.699486 | 4:-13171100 | None:intergenic |
| GTTGAAGAAAATAGAAAACG+GGG | 0.712341 | 4:+13171725 | MsG0480019003.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGAATATGAAATTGT+TGG | + | Chr4:13171692-13171711 | MsG0480019003.01.T01:CDS | 15.0% |
| !!! | ATAATTTTGAGAATCATTTT+GGG | - | Chr4:13171961-13171980 | None:intergenic | 15.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | Chr4:13171460-13171479 | None:intergenic | 20.0% |
| !! | CAAAATGATTCTCAAAATTA+TGG | + | Chr4:13171960-13171979 | MsG0480019003.01.T01:CDS | 20.0% |
| !!! | CATAATTTTGAGAATCATTT+TGG | - | Chr4:13171962-13171981 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | + | Chr4:13171538-13171557 | MsG0480019003.01.T01:intron | 20.0% |
| ! | AAGTTATAAACATCCATGTT+TGG | - | Chr4:13171406-13171425 | None:intergenic | 25.0% |
| ! | ACAAAGCAAAGAAATGAATT+AGG | - | Chr4:13171876-13171895 | None:intergenic | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | + | Chr4:13171584-13171603 | MsG0480019003.01.T01:CDS | 25.0% |
| ! | CTTTCTTTCCAACAAATTAA+AGG | - | Chr4:13171347-13171366 | None:intergenic | 25.0% |
| ! | TGGTTGAAGAAAATAGAAAA+CGG | + | Chr4:13171723-13171742 | MsG0480019003.01.T01:CDS | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | + | Chr4:13171585-13171604 | MsG0480019003.01.T01:CDS | 25.0% |
| !!! | CTTTAATTTGTTGGAAAGAA+AGG | + | Chr4:13171345-13171364 | MsG0480019003.01.T01:CDS | 25.0% |
| !!! | GTCATTTAAAGGTTTGTTTT+CGG | + | Chr4:13172016-13172035 | MsG0480019003.01.T01:CDS | 25.0% |
| AAAAGATACACATGCAAAGA+AGG | + | Chr4:13171769-13171788 | MsG0480019003.01.T01:CDS | 30.0% | |
| ACATGTTGCTAGTCATTTAA+AGG | + | Chr4:13172005-13172024 | MsG0480019003.01.T01:CDS | 30.0% | |
| ATATGAAATTGTTGGAAGCT+TGG | + | Chr4:13171700-13171719 | MsG0480019003.01.T01:CDS | 30.0% | |
| GGTTGAAGAAAATAGAAAAC+GGG | + | Chr4:13171724-13171743 | MsG0480019003.01.T01:CDS | 30.0% | |
| GTTGAAGAAAATAGAAAACG+GGG | + | Chr4:13171725-13171744 | MsG0480019003.01.T01:CDS | 30.0% | |
| TAAGTGACTAACCTTGATAA+TGG | - | Chr4:13171181-13171200 | None:intergenic | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | + | Chr4:13171586-13171605 | MsG0480019003.01.T01:CDS | 30.0% | |
| ! | TTTGCATGTGTATCTTTTGA+GGG | - | Chr4:13171767-13171786 | None:intergenic | 30.0% |
| !! | TTCTGATGCCTTTAATTTGT+TGG | + | Chr4:13171336-13171355 | MsG0480019003.01.T01:CDS | 30.0% |
| !! | TTTAAAGGTTTGTTTTCGGA+AGG | + | Chr4:13172020-13172039 | MsG0480019003.01.T01:CDS | 30.0% |
| AACAGTGATGTCATGATCAA+TGG | - | Chr4:13171126-13171145 | None:intergenic | 35.0% | |
| AACTGCATCAACGATTTCTA+TGG | + | Chr4:13171813-13171832 | MsG0480019003.01.T01:CDS | 35.0% | |
| AAGAAGAGTTCAAGATCATG+TGG | + | Chr4:13171639-13171658 | MsG0480019003.01.T01:CDS | 35.0% | |
| AATTATGGATGTTCCAGGTT+TGG | + | Chr4:13171975-13171994 | MsG0480019003.01.T01:CDS | 35.0% | |
| ACTGCATCAACGATTTCTAT+GGG | + | Chr4:13171814-13171833 | MsG0480019003.01.T01:CDS | 35.0% | |
| ATCAGAAGCTGTGTTACATT+TGG | - | Chr4:13171323-13171342 | None:intergenic | 35.0% | |
| ATTATGGATGTTCCAGGTTT+GGG | + | Chr4:13171976-13171995 | MsG0480019003.01.T01:CDS | 35.0% | |
| CACTGTTCTTAACACTATTG+AGG | + | Chr4:13171139-13171158 | MsG0480019003.01.T01:CDS | 35.0% | |
| CTCAAAATTATGGATGTTCC+AGG | + | Chr4:13171970-13171989 | MsG0480019003.01.T01:CDS | 35.0% | |
| TACATATTGGACTAAGCCTT+TGG | + | Chr4:13171613-13171632 | MsG0480019003.01.T01:CDS | 35.0% | |
| TTGAACTCTTCTTCAACCAA+AGG | - | Chr4:13171632-13171651 | None:intergenic | 35.0% | |
| ! | AGGAAAGAAGCATACTATCA+AGG | - | Chr4:13171856-13171875 | None:intergenic | 35.0% |
| ! | CTTTGCATGTGTATCTTTTG+AGG | - | Chr4:13171768-13171787 | None:intergenic | 35.0% |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | Chr4:13171432-13171451 | None:intergenic | 35.0% |
| ! | TGCAATCGATTCCATTATCA+AGG | + | Chr4:13171167-13171186 | MsG0480019003.01.T01:CDS | 35.0% |
| ! | TTGCATGTGTATCTTTTGAG+GGG | - | Chr4:13171766-13171785 | None:intergenic | 35.0% |
| AATGTGGGGCTTGTACATAT+TGG | + | Chr4:13171600-13171619 | MsG0480019003.01.T01:CDS | 40.0% | |
| AGAAATCGTTGATGCAGTTC+TGG | - | Chr4:13171812-13171831 | None:intergenic | 40.0% | |
| TCAAACCGTTTCTTGCAACA+TGG | - | Chr4:13171667-13171686 | None:intergenic | 40.0% | |
| TGAAATTGTTGGAAGCTTGG+TGG | + | Chr4:13171703-13171722 | MsG0480019003.01.T01:CDS | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | + | Chr4:13171390-13171409 | MsG0480019003.01.T01:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | Chr4:13171443-13171462 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | Chr4:13171444-13171463 | None:intergenic | 40.0% |
| CAATAACCTTGAGACCAGCA+GGG | - | Chr4:13171103-13171122 | None:intergenic | 45.0% | |
| TGGCACCATGTTGCAAGAAA+CGG | + | Chr4:13171659-13171678 | MsG0480019003.01.T01:CDS | 45.0% | |
| ! | CTATGGGCTGTCAATCAACT+AGG | + | Chr4:13171830-13171849 | MsG0480019003.01.T01:CDS | 45.0% |
| !! | TGATGGGCTGTCAACGAAAA+CGG | - | Chr4:13171078-13171097 | None:intergenic | 45.0% |
| ACATGTCCTACACCCAAACC+TGG | - | Chr4:13171991-13172010 | None:intergenic | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | Chr4:13171783-13171802 | MsG0480019003.01.T01:CDS | 50.0% | |
| GATGTTCCAGGTTTGGGTGT+AGG | + | Chr4:13171982-13172001 | MsG0480019003.01.T01:CDS | 50.0% | |
| GCAATAACCTTGAGACCAGC+AGG | - | Chr4:13171104-13171123 | None:intergenic | 50.0% | |
| GTTCTGGCGACCAAGACAAA+CGG | - | Chr4:13171796-13171815 | None:intergenic | 50.0% | |
| TGAGACCAGCAGGGAATGAT+GGG | - | Chr4:13171094-13171113 | None:intergenic | 50.0% | |
| TTCTGGCGACCAAGACAAAC+GGG | - | Chr4:13171795-13171814 | None:intergenic | 50.0% | |
| TTGAGACCAGCAGGGAATGA+TGG | - | Chr4:13171095-13171114 | None:intergenic | 50.0% | |
| ! | ATCATTCCCTGCTGGTCTCA+AGG | + | Chr4:13171094-13171113 | MsG0480019003.01.T01:CDS | 50.0% |
| GACAGCCCATCATTCCCTGC+TGG | + | Chr4:13171086-13171105 | MsG0480019003.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 13171071 | 13172053 | 13171071 | ID=MsG0480019003.01;Name=MsG0480019003.01 |
| Chr4 | mRNA | 13171071 | 13172053 | 13171071 | ID=MsG0480019003.01.T01;Parent=MsG0480019003.01;Name=MsG0480019003.01.T01;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|4|0|225 |
| Chr4 | exon | 13171071 | 13171188 | 13171071 | ID=MsG0480019003.01.T01:exon:8247;Parent=MsG0480019003.01.T01 |
| Chr4 | exon | 13171317 | 13171466 | 13171317 | ID=MsG0480019003.01.T01:exon:8248;Parent=MsG0480019003.01.T01 |
| Chr4 | exon | 13171555 | 13171860 | 13171555 | ID=MsG0480019003.01.T01:exon:8249;Parent=MsG0480019003.01.T01 |
| Chr4 | exon | 13171950 | 13172053 | 13171950 | ID=MsG0480019003.01.T01:exon:8250;Parent=MsG0480019003.01.T01 |
| Chr4 | CDS | 13171071 | 13171188 | 13171071 | ID=MsG0480019003.01.T01:cds;Parent=MsG0480019003.01.T01 |
| Chr4 | CDS | 13171317 | 13171466 | 13171317 | ID=MsG0480019003.01.T01:cds;Parent=MsG0480019003.01.T01 |
| Chr4 | CDS | 13171555 | 13171860 | 13171555 | ID=MsG0480019003.01.T01:cds;Parent=MsG0480019003.01.T01 |
| Chr4 | CDS | 13171950 | 13172053 | 13171950 | ID=MsG0480019003.01.T01:cds;Parent=MsG0480019003.01.T01 |
| Gene Sequence |
| Protein sequence |
