AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019011.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019011.01.T01 MTR_4g021760 84.713 314 45 2 1 313 1 312 0.0 546
MsG0480019011.01.T01 MTR_4g021855 66.776 304 89 5 1 295 1 301 2.51e-139 396
MsG0480019011.01.T01 MTR_4g021845 85.845 219 29 1 1 219 1 217 8.04e-138 389
MsG0480019011.01.T01 MTR_4g021790 76.033 242 56 1 1 242 1 240 1.79e-129 370
MsG0480019011.01.T01 MTR_5g055260 60.173 231 63 5 1 231 1 202 2.59e-86 259
MsG0480019011.01.T01 MTR_4g023980 78.417 139 28 1 55 193 35 171 9.43e-74 225
MsG0480019011.01.T01 MTR_6g045327 45.752 306 143 9 1 296 1 293 3.36e-71 225
MsG0480019011.01.T01 MTR_1g032570 37.808 365 160 9 10 309 11 373 1.64e-68 225
MsG0480019011.01.T01 MTR_3g086100 39.921 253 119 5 10 231 13 263 9.16e-57 192
MsG0480019011.01.T01 MTR_8g079940 39.695 262 125 6 9 239 24 283 5.31e-56 190
MsG0480019011.01.T01 MTR_4g121020 38.868 265 133 4 10 248 31 292 6.19e-55 189
MsG0480019011.01.T01 MTR_2g034960 39.245 265 133 4 10 248 29 291 6.24e-55 188
MsG0480019011.01.T01 MTR_4g121020 38.868 265 133 4 10 248 31 292 6.30e-55 189
MsG0480019011.01.T01 MTR_8g105600 40.323 248 126 3 4 231 3 248 1.63e-53 184
MsG0480019011.01.T01 MTR_1g013170 39.200 250 118 4 7 226 2 247 2.39e-50 174
MsG0480019011.01.T01 MTR_4g131600 36.032 247 137 4 9 234 19 265 1.92e-48 171
MsG0480019011.01.T01 MTR_7g117705 36.090 266 142 4 7 244 2 267 2.87e-48 167
MsG0480019011.01.T01 MTR_8g093040 42.797 236 112 6 1 231 1 218 6.79e-48 162
MsG0480019011.01.T01 MTR_3g106220 37.652 247 124 3 10 226 8 254 2.02e-46 166
MsG0480019011.01.T01 MTR_1g013180 36.585 246 130 3 7 226 153 398 3.28e-44 160
MsG0480019011.01.T01 MTR_1g032570 33.987 306 136 8 68 309 1 304 1.69e-43 157
MsG0480019011.01.T01 MTR_4g131570 32.800 250 142 4 10 233 17 266 1.51e-42 155
MsG0480019011.01.T01 MTR_2g450070 34.510 255 132 4 10 229 18 272 2.81e-42 155
MsG0480019011.01.T01 MTR_4g131580 33.065 248 143 4 9 233 16 263 3.68e-42 154
MsG0480019011.01.T01 MTR_2g450070 34.510 255 132 4 10 229 18 272 3.70e-42 154
MsG0480019011.01.T01 MTR_3g102590 38.140 215 104 4 10 222 8 195 4.37e-41 143
MsG0480019011.01.T01 MTR_6g016850 43.750 160 86 2 4 161 3 160 4.88e-41 141
MsG0480019011.01.T01 MTR_3g102600 37.156 218 99 3 10 226 8 188 1.50e-39 139
MsG0480019011.01.T01 MTR_3g102590 37.264 212 104 4 10 219 8 192 1.16e-38 135
MsG0480019011.01.T01 MTR_3g086100 39.175 194 86 4 68 231 1 192 2.01e-38 142
MsG0480019011.01.T01 MTR_3g102600 35.616 219 101 4 4 221 4 183 4.90e-37 131
MsG0480019011.01.T01 MTR_0450s0040 29.719 249 154 4 12 248 6 245 4.48e-32 122
MsG0480019011.01.T01 MTR_3g102600 36.416 173 73 2 54 226 4 139 5.73e-32 117
MsG0480019011.01.T01 MTR_7g026400 33.175 211 120 4 52 248 30 233 1.29e-31 124
MsG0480019011.01.T01 MTR_3g102600 34.524 168 73 2 54 221 4 134 2.08e-29 109
MsG0480019011.01.T01 MTR_4g121020 36.559 186 90 3 88 248 6 188 1.42e-28 115
MsG0480019011.01.T01 MTR_8g032710 23.810 357 212 10 12 309 19 374 3.02e-21 94.0
MsG0480019011.01.T01 MTR_1g013160 34.211 152 67 3 71 193 1 148 5.58e-19 82.8
MsG0480019011.01.T01 MTR_2g090675 38.298 94 55 2 135 226 125 217 3.84e-14 72.8
MsG0480019011.01.T01 MTR_5g041350 55.556 54 23 1 170 222 15 68 1.33e-13 70.9
MsG0480019011.01.T01 MTR_6g032990 44.872 78 42 1 170 246 42 119 3.88e-13 69.7
MsG0480019011.01.T01 MTR_7g098250 43.678 87 44 3 161 245 253 336 4.44e-13 69.7
MsG0480019011.01.T01 MTR_4g078810 48.276 58 30 0 169 226 157 214 6.60e-13 69.3
MsG0480019011.01.T01 MTR_7g088070 40.659 91 51 2 168 257 48 136 8.91e-13 67.8
MsG0480019011.01.T01 MTR_4g081710 51.852 54 25 1 170 222 17 70 1.62e-12 67.8
MsG0480019011.01.T01 MTR_2g086450 53.704 54 24 1 170 222 45 98 2.51e-12 67.4
MsG0480019011.01.T01 MTR_7g088070 51.786 56 26 1 168 222 48 103 2.98e-12 66.2
MsG0480019011.01.T01 MTR_5g014040 36.250 80 51 0 169 248 310 389 4.15e-12 67.0
MsG0480019011.01.T01 MTR_7g115530 47.222 72 36 2 170 239 218 289 5.27e-12 65.9
MsG0480019011.01.T01 MTR_7g115530 40.659 91 51 3 170 258 218 307 6.97e-12 65.5
MsG0480019011.01.T01 MTR_7g115530 50.000 64 30 2 170 231 218 281 1.21e-11 65.1
MsG0480019011.01.T01 MTR_2g027860 55.556 54 23 1 170 222 49 102 1.35e-11 64.7
MsG0480019011.01.T01 MTR_7g115530 40.659 91 51 3 170 258 218 307 1.65e-11 65.1
MsG0480019011.01.T01 MTR_7g089010 48.276 58 30 0 169 226 90 147 1.81e-11 64.3
MsG0480019011.01.T01 MTR_4g098870 48.148 54 28 0 169 222 309 362 1.90e-11 65.1
MsG0480019011.01.T01 MTR_4g098870 48.148 54 28 0 169 222 309 362 1.92e-11 65.1
MsG0480019011.01.T01 MTR_4g098870 48.148 54 28 0 169 222 329 382 2.03e-11 65.1
MsG0480019011.01.T01 MTR_4g098870 48.148 54 28 0 169 222 348 401 2.20e-11 65.1
MsG0480019011.01.T01 MTR_4g098870 48.148 54 28 0 169 222 329 382 2.21e-11 64.7
MsG0480019011.01.T01 MTR_1g080330 42.857 84 45 3 161 242 165 247 2.80e-11 63.5
MsG0480019011.01.T01 MTR_7g093030 42.466 73 40 2 167 238 209 280 3.18e-11 63.5
MsG0480019011.01.T01 MTR_1g093080 45.122 82 35 3 151 229 199 273 3.24e-11 63.9
MsG0480019011.01.T01 MTR_4g064730 41.250 80 45 2 147 226 110 187 3.76e-11 63.5
MsG0480019011.01.T01 MTR_1g080330 47.059 68 34 2 166 231 171 238 6.64e-11 63.2
MsG0480019011.01.T01 MTR_7g093030 47.368 57 29 1 167 222 209 265 8.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019011.01.T01 AT2G01760 38.403 263 121 5 7 232 4 262 1.51e-55 185
MsG0480019011.01.T01 AT1G67710 40.075 267 124 8 11 243 8 272 2.32e-53 182
MsG0480019011.01.T01 AT3G16857 36.039 308 139 9 10 259 33 340 1.32e-50 178
MsG0480019011.01.T01 AT3G16857 36.688 308 137 11 10 259 33 340 1.35e-50 177
MsG0480019011.01.T01 AT2G01760 35.052 291 120 7 7 232 4 290 1.35e-49 170
MsG0480019011.01.T01 AT4G31920 36.481 233 138 2 10 232 13 245 3.97e-46 164
MsG0480019011.01.T01 AT2G25180 38.750 240 123 6 10 226 13 251 1.07e-43 158
MsG0480019011.01.T01 AT3G16857 34.944 269 117 9 49 259 2 270 2.12e-39 146
MsG0480019011.01.T01 AT5G58080 37.008 254 126 7 10 236 14 260 3.90e-39 145
MsG0480019011.01.T01 AT1G67710 40.191 209 90 7 68 243 1 207 7.11e-36 134
MsG0480019011.01.T01 AT2G01760 35.821 201 89 4 68 232 1 197 4.17e-35 129
MsG0480019011.01.T01 AT5G49240 31.356 236 137 5 9 219 37 272 3.14e-33 124
MsG0480019011.01.T01 AT3G62670 30.258 271 159 9 28 272 53 319 9.58e-32 123
MsG0480019011.01.T01 AT1G49190 27.734 256 154 6 10 234 30 285 1.48e-28 114
MsG0480019011.01.T01 AT1G67710 38.624 189 81 7 88 243 12 198 8.29e-27 109
MsG0480019011.01.T01 AT5G07210 27.778 270 141 7 14 231 16 283 3.98e-25 105
MsG0480019011.01.T01 AT5G07210 26.978 278 141 8 14 231 16 291 1.49e-22 98.6
MsG0480019011.01.T01 AT2G27070 25.379 264 140 8 14 222 16 277 1.90e-19 89.4
MsG0480019011.01.T01 AT1G49190 32.258 124 83 1 10 132 30 153 1.44e-17 83.6
MsG0480019011.01.T01 AT5G29000 40.566 106 54 4 135 238 203 301 1.27e-15 76.6
MsG0480019011.01.T01 AT5G29000 38.938 113 60 4 135 245 203 308 1.43e-15 77.0
MsG0480019011.01.T01 AT5G29000 38.938 113 60 4 135 245 160 265 1.55e-15 76.6
MsG0480019011.01.T01 AT5G29000 38.938 113 60 4 135 245 160 265 1.55e-15 76.6
MsG0480019011.01.T01 AT5G44190 48.333 60 31 0 167 226 144 203 1.31e-13 71.2
MsG0480019011.01.T01 AT5G44190 48.333 60 31 0 167 226 144 203 1.50e-13 70.9
MsG0480019011.01.T01 AT3G04030 55.556 54 23 1 170 222 45 98 3.90e-13 69.7
MsG0480019011.01.T01 AT3G04030 55.556 54 23 1 170 222 45 98 4.41e-13 69.7
MsG0480019011.01.T01 AT4G28610 47.126 87 40 4 170 252 225 309 7.27e-13 68.9
MsG0480019011.01.T01 AT5G18240 55.556 54 23 1 170 222 45 98 8.18e-13 68.9
MsG0480019011.01.T01 AT5G18240 55.556 54 23 1 170 222 45 98 8.18e-13 68.9
MsG0480019011.01.T01 AT5G18240 55.556 54 23 1 170 222 45 98 9.06e-13 68.9
MsG0480019011.01.T01 AT5G18240 55.556 54 23 1 170 222 45 98 9.06e-13 68.9
MsG0480019011.01.T01 AT5G18240 55.556 54 23 1 170 222 45 98 9.08e-13 68.9
MsG0480019011.01.T01 AT2G01060 45.783 83 42 2 159 238 4 86 1.14e-12 67.8
MsG0480019011.01.T01 AT5G59570 42.105 76 41 1 151 226 125 197 1.64e-12 67.4
MsG0480019011.01.T01 AT5G59570 42.105 76 41 1 151 226 125 197 1.64e-12 67.4
MsG0480019011.01.T01 AT3G04450 48.276 58 29 1 166 222 234 291 1.65e-12 67.4
MsG0480019011.01.T01 AT3G04030 52.830 53 25 0 170 222 45 97 2.64e-12 67.4
MsG0480019011.01.T01 AT3G46640 43.210 81 43 2 146 226 123 200 3.55e-12 66.6
MsG0480019011.01.T01 AT3G46640 43.210 81 43 2 146 226 123 200 3.55e-12 66.6
MsG0480019011.01.T01 AT3G46640 43.210 81 43 2 146 226 123 200 3.68e-12 66.6
MsG0480019011.01.T01 AT3G04450 48.276 58 29 1 166 222 234 291 3.76e-12 67.0
MsG0480019011.01.T01 AT3G04450 48.276 58 29 1 166 222 194 251 3.99e-12 67.0
MsG0480019011.01.T01 AT3G04450 48.276 58 29 1 166 222 194 251 3.99e-12 67.0
MsG0480019011.01.T01 AT1G69580 51.852 54 25 1 170 222 34 87 6.63e-12 65.9
MsG0480019011.01.T01 AT2G20570 46.552 58 31 0 169 226 152 209 6.74e-12 66.2
MsG0480019011.01.T01 AT1G69580 51.852 54 25 1 170 222 34 87 7.05e-12 65.9
MsG0480019011.01.T01 AT5G05090 42.697 89 39 3 138 226 61 137 7.26e-12 65.1
MsG0480019011.01.T01 AT2G40970 46.552 58 31 0 169 226 104 161 1.15e-11 64.3
MsG0480019011.01.T01 AT3G10760 48.276 58 30 0 169 226 104 161 1.35e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.86e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.86e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.86e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.86e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.86e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.86e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.99e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.99e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.99e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.99e-11 65.1
MsG0480019011.01.T01 AT4G18020 36.842 76 45 1 152 227 281 353 1.99e-11 65.1
MsG0480019011.01.T01 AT2G20570 47.273 55 29 0 172 226 171 225 4.88e-11 63.5
MsG0480019011.01.T01 AT3G24120 48.529 68 31 2 170 233 41 108 6.23e-11 62.8
MsG0480019011.01.T01 AT3G24120 48.529 68 31 2 170 233 41 108 6.28e-11 62.8
MsG0480019011.01.T01 AT4G04605 46.970 66 33 2 168 231 12 77 9.72e-11 61.2

Find 58 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGTGTCGCAGAATTC+AGG 0.268438 4:+13260649 None:intergenic
ACATATTGCCAGCCATTTAC+AGG 0.282271 4:-13261147 MsG0480019011.01.T01:intron
TTCAGTTACCAAATGTAGTA+TGG 0.293347 4:-13261872 MsG0480019011.01.T01:intron
TGAGTTGTAGGGTAACATTT+TGG 0.376494 4:+13261755 None:intergenic
GATAAATCATCATCAACATA+TGG 0.380393 4:+13260537 None:intergenic
AATGTGGGGCTTGCGAATAT+TGG 0.385194 4:-13261559 MsG0480019011.01.T01:CDS
CGAATATTGGACTAAGCCTT+TGG 0.392176 4:-13261546 MsG0480019011.01.T01:CDS
TGACAGGAATGTTGAGTTGT+AGG 0.408636 4:+13261743 None:intergenic
ATCAGAAGCCATACTACATT+TGG 0.409595 4:+13261864 None:intergenic
AATAAAGAATATGAAATTGT+TGG 0.416766 4:-13261461 MsG0480019011.01.T01:CDS
CTTTCTTTCCAACATGTTGA+AGG 0.419409 4:+13261840 None:intergenic
CAAAGAAGGCCCGTTTGTCT+TGG 0.435563 4:-13261370 MsG0480019011.01.T01:CDS
AAAAGAAACACTTGCAAAGA+AGG 0.435703 4:-13261384 MsG0480019011.01.T01:CDS
CAACGACATTGGGTGGAAAT+CGG 0.437862 4:-13260609 MsG0480019011.01.T01:CDS
GGTTCAAGAAAATAGAAAAC+GGG 0.441425 4:-13261429 MsG0480019011.01.T01:CDS
TTGCGATGCACAACGACATT+GGG 0.452490 4:-13260619 MsG0480019011.01.T01:CDS
TTGAGACCGGCTGGGAATGA+TGG 0.453544 4:+13262068 None:intergenic
CTTCAACATGTTGGAAAGAA+AGG 0.459586 4:-13261839 MsG0480019011.01.T01:CDS
AATAAATTCTTACTAATGAC+AGG 0.461511 4:+13261727 None:intergenic
ACATCTCCTCAATAGAGTTA+AGG 0.467190 4:+13262015 None:intergenic
TTCTCGTGACCAAGACAAAC+GGG 0.467708 4:+13261361 None:intergenic
TCAACATATGGGAACAAGTT+GGG 0.468173 4:+13260549 None:intergenic
TACTCACTCAATGCCGGAGC+AGG 0.473606 4:-13260685 MsG0480019011.01.T01:CDS
GCAATAACCTTGAGACCGGC+TGG 0.475576 4:+13262059 None:intergenic
AAAAGTGTTGCTCATAATGT+TGG 0.490442 4:+13260581 None:intergenic
AAGTCATAAACATCCATGTC+TGG 0.491105 4:+13261781 None:intergenic
TGGTTCAAGAAAATAGAAAA+CGG 0.501089 4:-13261430 MsG0480019011.01.T01:CDS
AGGAAAGAATCATACTATCA+AGG 0.510494 4:+13261300 None:intergenic
ATATGAAATTGTTGGAAGCT+CGG 0.515274 4:-13261453 MsG0480019011.01.T01:CDS
ATTGCGATGCACAACGACAT+TGG 0.516098 4:-13260620 MsG0480019011.01.T01:CDS
TGTAATCGATATCATTATCA+AGG 0.517908 4:-13261993 MsG0480019011.01.T01:intron
ATCATGAAATCTATTGAATG+TGG 0.519581 4:-13261575 MsG0480019011.01.T01:CDS
GACAGGAATGTTGAGTTGTA+GGG 0.519779 4:+13261744 None:intergenic
TCATGAAATCTATTGAATGT+GGG 0.521948 4:-13261574 MsG0480019011.01.T01:CDS
ATTCTCGTGACCAAGACAAA+CGG 0.526657 4:+13261360 None:intergenic
AAAATGAACCTGTAAATGGC+TGG 0.527802 4:+13261139 None:intergenic
TTCTGATGCCTTCAACATGT+TGG 0.527887 4:-13261848 MsG0480019011.01.T01:CDS
CATGTTGCAAGAATTAGAAA+CGG 0.528421 4:-13261494 MsG0480019011.01.T01:CDS
CACTCTCCTTAACTCTATTG+AGG 0.546467 4:-13262021 MsG0480019011.01.T01:CDS
CTACGTGCAGTCAATCAACT+AGG 0.547867 4:-13261323 MsG0480019011.01.T01:CDS
ATAAATCATCATCAACATAT+GGG 0.548211 4:+13260538 None:intergenic
AGCTCAACAGAAGAGACAAA+AGG 0.548661 4:-13260762 MsG0480019011.01.T01:CDS
AGAAAACTCTGGTCCTGCTC+CGG 0.548712 4:+13260672 None:intergenic
ATCATTCCCAGCCGGTCTCA+AGG 0.552068 4:-13262066 MsG0480019011.01.T01:CDS
ATCAACATATGGGAACAAGT+TGG 0.563419 4:+13260548 None:intergenic
CATGAAATCTATTGAATGTG+GGG 0.577494 4:-13261573 MsG0480019011.01.T01:CDS
TGAGACCGGCTGGGAATGAT+GGG 0.577892 4:+13262069 None:intergenic
CGATGCACAACGACATTGGG+TGG 0.580466 4:-13260616 MsG0480019011.01.T01:CDS
AATTGCAATAACCTTGAGAC+CGG 0.581075 4:+13262055 None:intergenic
AGAAGCTACTCACTCAATGC+CGG 0.591913 4:-13260691 MsG0480019011.01.T01:CDS
CAGAATTCAGGAGAAAACTC+TGG 0.602905 4:+13260661 None:intergenic
CAATAACCTTGAGACCGGCT+GGG 0.613963 4:+13262060 None:intergenic
CAACAGAAGAGACAAAAGGT+AGG 0.617016 4:-13260758 MsG0480019011.01.T01:CDS
GACAACCCATCATTCCCAGC+CGG 0.620153 4:-13262074 MsG0480019011.01.T01:CDS
TGATGCTCATATGCCAGACA+TGG 0.629107 4:-13261794 MsG0480019011.01.T01:CDS
TGAAATTGTTGGAAGCTCGG+TGG 0.670504 4:-13261450 MsG0480019011.01.T01:CDS
ATGATTTATCATCACTTGTG+TGG 0.696325 4:-13260524 MsG0480019011.01.T01:CDS
GTTCAAGAAAATAGAAAACG+GGG 0.742093 4:-13261428 MsG0480019011.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAATATGAAATTGT+TGG - Chr4:13261149-13261168 MsG0480019011.01.T01:CDS 15.0%
!!! AATATGTTCTTTTTTCATAT+CGG + Chr4:13261450-13261469 None:intergenic 15.0%
!!! TGATTTTAAACTGAAATTTA+TGG - Chr4:13261763-13261782 MsG0480019011.01.T01:CDS 15.0%
!! AAAAGATGAAAACTTGAATA+AGG + Chr4:13260660-13260679 None:intergenic 20.0%
!! AATAAATTCTTACTAATGAC+AGG + Chr4:13260886-13260905 None:intergenic 20.0%
!! AGCATAGTAAAAAAGTAATT+AGG + Chr4:13261333-13261352 None:intergenic 20.0%
!! ATAAATCATCATCAACATAT+GGG + Chr4:13262075-13262094 None:intergenic 20.0%
!! CAATATAAGAATAAACAAAC+AGG + Chr4:13260713-13260732 None:intergenic 20.0%
!!! AAAAAAGATTCTGAAAATCA+TGG - Chr4:13261418-13261437 MsG0480019011.01.T01:CDS 20.0%
!!! ATATGTTCTTTTTTCATATC+GGG + Chr4:13261449-13261468 None:intergenic 20.0%
!!! ATATTTCTTTTTTGTAGTGA+TGG - Chr4:13260989-13261008 MsG0480019011.01.T01:intron 20.0%
!!! ATGATTTTCAGAATCTTTTT+TGG + Chr4:13261419-13261438 None:intergenic 20.0%
!!! ATGTTTTTCTCTTAATTTTC+AGG - Chr4:13261386-13261405 MsG0480019011.01.T01:CDS 20.0%
!!! ATTCAAGTTTTCATCTTTTT+TGG - Chr4:13260661-13260680 MsG0480019011.01.T01:CDS 20.0%
!!! TGTTTTTCTCTTAATTTTCA+GGG - Chr4:13261387-13261406 MsG0480019011.01.T01:CDS 20.0%
!!! TTTTGCAGAAATATAGAAAT+CGG - Chr4:13261819-13261838 MsG0480019011.01.T01:CDS 20.0%
! ATCATGAAATCTATTGAATG+TGG - Chr4:13261035-13261054 MsG0480019011.01.T01:intron 25.0%
! GATAAATCATCATCAACATA+TGG + Chr4:13262076-13262095 None:intergenic 25.0%
! TACAAAAATGAACCTGTAAA+TGG + Chr4:13261478-13261497 None:intergenic 25.0%
! TCATGAAATCTATTGAATGT+GGG - Chr4:13261036-13261055 MsG0480019011.01.T01:intron 25.0%
! TGGTTCAAGAAAATAGAAAA+CGG - Chr4:13261180-13261199 MsG0480019011.01.T01:CDS 25.0%
! TGTAATCGATATCATTATCA+AGG - Chr4:13260617-13260636 MsG0480019011.01.T01:CDS 25.0%
!! GTTTTTCTCTTAATTTTCAG+GGG - Chr4:13261388-13261407 MsG0480019011.01.T01:CDS 25.0%
!! TTTCATGATAGAACTTTTTG+TGG + Chr4:13261024-13261043 None:intergenic 25.0%
!!! AAGTCAAATTTTGTTTCAAG+AGG + Chr4:13261899-13261918 None:intergenic 25.0%
AAAAGAAACACTTGCAAAGA+AGG - Chr4:13261226-13261245 MsG0480019011.01.T01:intron 30.0%
AACTGAGAAACTATAGACTT+AGG + Chr4:13261539-13261558 None:intergenic 30.0%
AGGAAAGAATCATACTATCA+AGG + Chr4:13261313-13261332 None:intergenic 30.0%
AGTAGCATATTATCAACAAG+AGG + Chr4:13261732-13261751 None:intergenic 30.0%
ATATGAAATTGTTGGAAGCT+CGG - Chr4:13261157-13261176 MsG0480019011.01.T01:CDS 30.0%
ATGATTTATCATCACTTGTG+TGG - Chr4:13262086-13262105 MsG0480019011.01.T01:CDS 30.0%
CATGAAATCTATTGAATGTG+GGG - Chr4:13261037-13261056 MsG0480019011.01.T01:intron 30.0%
CATGTTGCAAGAATTAGAAA+CGG - Chr4:13261116-13261135 MsG0480019011.01.T01:intron 30.0%
GGTTCAAGAAAATAGAAAAC+GGG - Chr4:13261181-13261200 MsG0480019011.01.T01:CDS 30.0%
GTTCAAGAAAATAGAAAACG+GGG - Chr4:13261182-13261201 MsG0480019011.01.T01:CDS 30.0%
TGATTTACAACAACAGACTT+AGG + Chr4:13261570-13261589 None:intergenic 30.0%
TTCAGTTACCAAATGTAGTA+TGG - Chr4:13260738-13260757 MsG0480019011.01.T01:CDS 30.0%
TTGAATAACATGCAAGACTA+AGG + Chr4:13261608-13261627 None:intergenic 30.0%
!! AAAAGTGTTGCTCATAATGT+TGG + Chr4:13262032-13262051 None:intergenic 30.0%
AAAAAGAGGTCAAGATCATG+TGG - Chr4:13261090-13261109 MsG0480019011.01.T01:intron 35.0%
AAAATGAACCTGTAAATGGC+TGG + Chr4:13261474-13261493 None:intergenic 35.0%
AAGTCATAAACATCCATGTC+TGG + Chr4:13260832-13260851 None:intergenic 35.0%
AATTGCAATAACCTTGAGAC+CGG + Chr4:13260558-13260577 None:intergenic 35.0%
ACATCTCCTCAATAGAGTTA+AGG + Chr4:13260598-13260617 None:intergenic 35.0%
AGAGGATGTATAGAAGCTAA+TGG + Chr4:13261714-13261733 None:intergenic 35.0%
AGTAGTGAATTATGCAGTCA+TGG - Chr4:13261644-13261663 MsG0480019011.01.T01:intron 35.0%
ATCAACATATGGGAACAAGT+TGG + Chr4:13262065-13262084 None:intergenic 35.0%
ATCAGAAGCCATACTACATT+TGG + Chr4:13260749-13260768 None:intergenic 35.0%
CTTCAACATGTTGGAAAGAA+AGG - Chr4:13260771-13260790 MsG0480019011.01.T01:CDS 35.0%
CTTTCTTTCCAACATGTTGA+AGG + Chr4:13260773-13260792 None:intergenic 35.0%
TAAGCCTTTGGTTGAAAAAG+AGG - Chr4:13261076-13261095 MsG0480019011.01.T01:intron 35.0%
TCAACATATGGGAACAAGTT+GGG + Chr4:13262064-13262083 None:intergenic 35.0%
! CTTTGCAAGTGTTTCTTTTG+AGG + Chr4:13261225-13261244 None:intergenic 35.0%
! TGAGTTGTAGGGTAACATTT+TGG + Chr4:13260858-13260877 None:intergenic 35.0%
!!! TTGACCTCTTTTTCAACCAA+AGG + Chr4:13261083-13261102 None:intergenic 35.0%
ACATATTGCCAGCCATTTAC+AGG - Chr4:13261463-13261482 MsG0480019011.01.T01:CDS 40.0%
AGCTCAACAGAAGAGACAAA+AGG - Chr4:13261848-13261867 MsG0480019011.01.T01:CDS 40.0%
ATTCTCGTGACCAAGACAAA+CGG + Chr4:13261253-13261272 None:intergenic 40.0%
CAACAGAAGAGACAAAAGGT+AGG - Chr4:13261852-13261871 MsG0480019011.01.T01:CDS 40.0%
CACTCTCCTTAACTCTATTG+AGG - Chr4:13260589-13260608 MsG0480019011.01.T01:CDS 40.0%
CAGAATTCAGGAGAAAACTC+TGG + Chr4:13261952-13261971 None:intergenic 40.0%
CGAATATTGGACTAAGCCTT+TGG - Chr4:13261064-13261083 MsG0480019011.01.T01:intron 40.0%
TTCTGATGCCTTCAACATGT+TGG - Chr4:13260762-13260781 MsG0480019011.01.T01:CDS 40.0%
! GACAGGAATGTTGAGTTGTA+GGG + Chr4:13260869-13260888 None:intergenic 40.0%
! TGACAGGAATGTTGAGTTGT+AGG + Chr4:13260870-13260889 None:intergenic 40.0%
AATGTGGGGCTTGCGAATAT+TGG - Chr4:13261051-13261070 MsG0480019011.01.T01:intron 45.0%
AGAAGCTACTCACTCAATGC+CGG - Chr4:13261919-13261938 MsG0480019011.01.T01:intron 45.0%
ATTGCGATGCACAACGACAT+TGG - Chr4:13261990-13262009 MsG0480019011.01.T01:intron 45.0%
CAACGACATTGGGTGGAAAT+CGG - Chr4:13262001-13262020 MsG0480019011.01.T01:CDS 45.0%
CTACGTGCAGTCAATCAACT+AGG - Chr4:13261287-13261306 MsG0480019011.01.T01:intron 45.0%
GACATTGTGTCGCAGAATTC+AGG + Chr4:13261964-13261983 None:intergenic 45.0%
TGAAATTGTTGGAAGCTCGG+TGG - Chr4:13261160-13261179 MsG0480019011.01.T01:CDS 45.0%
TGATGCTCATATGCCAGACA+TGG - Chr4:13260816-13260835 MsG0480019011.01.T01:intron 45.0%
TTCTCGTGACCAAGACAAAC+GGG + Chr4:13261252-13261271 None:intergenic 45.0%
TTGCGATGCACAACGACATT+GGG - Chr4:13261991-13262010 MsG0480019011.01.T01:intron 45.0%
AGAAAACTCTGGTCCTGCTC+CGG + Chr4:13261941-13261960 None:intergenic 50.0%
CAAAGAAGGCCCGTTTGTCT+TGG - Chr4:13261240-13261259 MsG0480019011.01.T01:intron 50.0%
CAATAACCTTGAGACCGGCT+GGG + Chr4:13260553-13260572 None:intergenic 50.0%
ATCATTCCCAGCCGGTCTCA+AGG - Chr4:13260544-13260563 MsG0480019011.01.T01:CDS 55.0%
CGATGCACAACGACATTGGG+TGG - Chr4:13261994-13262013 MsG0480019011.01.T01:CDS 55.0%
GACAACCCATCATTCCCAGC+CGG - Chr4:13260536-13260555 MsG0480019011.01.T01:CDS 55.0%
GCAATAACCTTGAGACCGGC+TGG + Chr4:13260554-13260573 None:intergenic 55.0%
TACTCACTCAATGCCGGAGC+AGG - Chr4:13261925-13261944 MsG0480019011.01.T01:intron 55.0%
TGAGACCGGCTGGGAATGAT+GGG + Chr4:13260544-13260563 None:intergenic 55.0%
TTGAGACCGGCTGGGAATGA+TGG + Chr4:13260545-13260564 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 13260521 13262111 13260521 ID=MsG0480019011.01;Name=MsG0480019011.01
Chr4 mRNA 13260521 13262111 13260521 ID=MsG0480019011.01.T01;Parent=MsG0480019011.01;Name=MsG0480019011.01.T01;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|5|0|313
Chr4 exon 13261994 13262111 13261994 ID=MsG0480019011.01.T01:exon:8307;Parent=MsG0480019011.01.T01
Chr4 exon 13261740 13261889 13261740 ID=MsG0480019011.01.T01:exon:8306;Parent=MsG0480019011.01.T01
Chr4 exon 13261315 13261626 13261315 ID=MsG0480019011.01.T01:exon:8305;Parent=MsG0480019011.01.T01
Chr4 exon 13261148 13261224 13261148 ID=MsG0480019011.01.T01:exon:8304;Parent=MsG0480019011.01.T01
Chr4 exon 13260521 13260805 13260521 ID=MsG0480019011.01.T01:exon:8303;Parent=MsG0480019011.01.T01
Chr4 CDS 13261994 13262111 13261994 ID=MsG0480019011.01.T01:cds;Parent=MsG0480019011.01.T01
Chr4 CDS 13261740 13261889 13261740 ID=MsG0480019011.01.T01:cds;Parent=MsG0480019011.01.T01
Chr4 CDS 13261315 13261626 13261315 ID=MsG0480019011.01.T01:cds;Parent=MsG0480019011.01.T01
Chr4 CDS 13261148 13261224 13261148 ID=MsG0480019011.01.T01:cds;Parent=MsG0480019011.01.T01
Chr4 CDS 13260521 13260805 13260521 ID=MsG0480019011.01.T01:cds;Parent=MsG0480019011.01.T01
Gene Sequence

>MsG0480019011.01.T01

ATGGCAGTTTTCACTGACAACCCATCATTCCCAGCCGGTCTCAAGGTTATTGCAATTGATCATGACATCACTCTCCTTAACTCTATTGAGGAGATGTGTAATCGATATCATTATCAAGTTACCAAATGTAGTATGGCTTCTGATGCCTTCAACATGTTGGAAAGAAAGGACTGTTTCGATGTAATGTTGATTGATGCTCATATGCCAGACATGGATGTTTATGACTTTGTCCAAAATGTTACCCTACAACTCAACATTCCTGTCATTATGATGGCTGTTGATTCCACAAAAAGTTCTATCATGAAATCTATTGAATGTGGGGCTTGCGAATATTGGACTAAGCCTTTGGTTGAAAAAGAGGTCAAGATCATGTGGCAACATGTTGCAAGAATTAGAAACGGTTTGATTGAAAATAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTCAAGAAAATAGAAAACGGGGTAGAGAAGATGCTAATGCCTCAAAAGAAACACTTGCAAAGAAGGCCCGTTTGTCTTGGTCACGAGAATTGCATCAGCAGTTTCTACGTGCAGTCAATCAACTAGGCCTTGATAGGGCAACGCCAAAAAAGATTCTGAAAATCATGGATGTTCCCGATATGAAAAAAGAACATATTGCCAGCCATTTACAGAAATATAGAAATCGGTTAAAGAGCTCAACAGAAGAGACAAAAGGTAGGATGAAAAAATCAAAGACGAGTCCTCTTGAAACAAAATTTGACTTAGAAGCTACTCACTCAATGCCGGAGCAGGACCAGAGTTTTCTCCTGAATTCTGCGACACAATGTCGCGACAATTGCGATGCACAACGACATTGGGTGGAAATCGGTGAATCCAACATTATGAGCAACACTTTTTCAGACTTGCCCAACTTGTTCCCATATGTTGATGATGATTTATCATCACTTGTGTGGTGA
Protein sequence

>MsG0480019011.01.T01

MAVFTDNPSFPAGLKVIAIDHDITLLNSIEEMCNRYHYQVTKCSMASDAFNMLERKDCFDVMLIDAHMPDMDVYDFVQNVTLQLNIPVIMMAVDSTKSSIMKSIECGACEYWTKPLVEKEVKIMWQHVARIRNGLIENKEYEIVGSSVVQENRKRGREDANASKETLAKKARLSWSRELHQQFLRAVNQLGLDRATPKKILKIMDVPDMKKEHIASHLQKYRNRLKSSTEETKGRMKKSKTSPLETKFDLEATHSMPEQDQSFLLNSATQCRDNCDAQRHWVEIGESNIMSNTFSDLPNLFPYVDDDLSSLVW*