Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019015.01.T01 | QSD99748.1 | 57.778 | 270 | 64 | 5 | 1 | 238 | 1 | 252 | 1.81E-95 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019015.01.T01 | Q9FXD6 | 37.5 | 168 | 97 | 4 | 11 | 175 | 8 | 170 | 4.31E-30 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019015.01.T01 | A0A896WF86 | 57.778 | 270 | 64 | 5 | 1 | 238 | 1 | 252 | 8.62e-96 | 290 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480019015.01.T01 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019015.01.T01 | MTR_4g021790 | 53.571 | 280 | 83 | 4 | 1 | 239 | 1 | 274 | 2.08e-91 | 270 |
| MsG0480019015.01.T01 | MTR_4g021855 | 48.701 | 308 | 82 | 7 | 1 | 239 | 1 | 301 | 4.52e-83 | 250 |
| MsG0480019015.01.T01 | MTR_5g055260 | 57.724 | 246 | 56 | 3 | 1 | 205 | 1 | 239 | 1.35e-82 | 247 |
| MsG0480019015.01.T01 | MTR_4g021845 | 86.923 | 130 | 16 | 1 | 1 | 129 | 1 | 130 | 2.06e-79 | 238 |
| MsG0480019015.01.T01 | MTR_4g021760 | 56.853 | 197 | 77 | 3 | 1 | 195 | 1 | 191 | 2.56e-68 | 213 |
| MsG0480019015.01.T01 | MTR_1g032570 | 50.000 | 122 | 59 | 2 | 10 | 129 | 11 | 132 | 8.70e-35 | 131 |
| MsG0480019015.01.T01 | MTR_6g016850 | 45.528 | 123 | 64 | 2 | 10 | 129 | 9 | 131 | 5.00e-32 | 115 |
| MsG0480019015.01.T01 | MTR_4g023980 | 70.130 | 77 | 22 | 1 | 55 | 130 | 35 | 111 | 9.80e-32 | 115 |
| MsG0480019015.01.T01 | MTR_8g093040 | 35.841 | 226 | 79 | 5 | 1 | 168 | 1 | 218 | 1.15e-31 | 117 |
| MsG0480019015.01.T01 | MTR_8g105600 | 46.721 | 122 | 63 | 2 | 10 | 129 | 9 | 130 | 4.02e-31 | 120 |
| MsG0480019015.01.T01 | MTR_4g121020 | 45.902 | 122 | 64 | 2 | 10 | 129 | 31 | 152 | 1.64e-29 | 116 |
| MsG0480019015.01.T01 | MTR_4g121020 | 45.902 | 122 | 64 | 2 | 10 | 129 | 31 | 152 | 1.71e-29 | 116 |
| MsG0480019015.01.T01 | MTR_3g086100 | 43.443 | 122 | 67 | 2 | 10 | 129 | 13 | 134 | 1.05e-28 | 113 |
| MsG0480019015.01.T01 | MTR_2g034960 | 45.082 | 122 | 65 | 2 | 10 | 129 | 29 | 150 | 1.13e-27 | 110 |
| MsG0480019015.01.T01 | MTR_8g079940 | 40.945 | 127 | 73 | 2 | 9 | 133 | 24 | 150 | 1.73e-27 | 110 |
| MsG0480019015.01.T01 | MTR_3g102600 | 34.066 | 182 | 93 | 3 | 10 | 164 | 8 | 189 | 2.53e-26 | 102 |
| MsG0480019015.01.T01 | MTR_6g045327 | 36.508 | 189 | 109 | 4 | 10 | 195 | 14 | 194 | 1.28e-25 | 103 |
| MsG0480019015.01.T01 | MTR_4g131600 | 39.844 | 128 | 75 | 2 | 10 | 135 | 20 | 147 | 2.51e-24 | 101 |
| MsG0480019015.01.T01 | MTR_7g117705 | 33.333 | 174 | 105 | 4 | 7 | 177 | 2 | 167 | 9.49e-24 | 99.0 |
| MsG0480019015.01.T01 | MTR_1g013170 | 38.168 | 131 | 79 | 2 | 7 | 135 | 2 | 132 | 6.47e-23 | 97.1 |
| MsG0480019015.01.T01 | MTR_3g106220 | 40.164 | 122 | 71 | 2 | 10 | 129 | 8 | 129 | 8.61e-23 | 97.1 |
| MsG0480019015.01.T01 | MTR_1g013180 | 40.000 | 125 | 73 | 2 | 7 | 129 | 153 | 277 | 1.16e-22 | 96.7 |
| MsG0480019015.01.T01 | MTR_3g102600 | 31.818 | 176 | 93 | 3 | 10 | 158 | 8 | 183 | 2.72e-22 | 90.9 |
| MsG0480019015.01.T01 | MTR_4g131570 | 35.938 | 128 | 80 | 2 | 10 | 135 | 17 | 144 | 3.95e-21 | 92.0 |
| MsG0480019015.01.T01 | MTR_4g131580 | 34.586 | 133 | 85 | 2 | 5 | 135 | 12 | 144 | 1.30e-20 | 90.5 |
| MsG0480019015.01.T01 | MTR_3g102590 | 30.159 | 189 | 94 | 4 | 10 | 160 | 8 | 196 | 1.80e-20 | 87.0 |
| MsG0480019015.01.T01 | MTR_3g102600 | 33.094 | 139 | 67 | 2 | 52 | 164 | 2 | 140 | 4.57e-19 | 82.0 |
| MsG0480019015.01.T01 | MTR_2g450070 | 33.607 | 122 | 79 | 2 | 10 | 129 | 18 | 139 | 1.98e-18 | 84.3 |
| MsG0480019015.01.T01 | MTR_2g450070 | 33.607 | 122 | 79 | 2 | 10 | 129 | 18 | 139 | 2.11e-18 | 84.3 |
| MsG0480019015.01.T01 | MTR_3g102590 | 29.189 | 185 | 93 | 4 | 10 | 156 | 8 | 192 | 1.05e-17 | 78.6 |
| MsG0480019015.01.T01 | MTR_3g102600 | 30.075 | 133 | 67 | 2 | 52 | 158 | 2 | 134 | 7.20e-15 | 69.7 |
| MsG0480019015.01.T01 | MTR_1g032570 | 42.857 | 63 | 35 | 1 | 68 | 129 | 1 | 63 | 1.46e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019015.01.T01 | AT1G67710 | 37.500 | 168 | 97 | 4 | 11 | 175 | 8 | 170 | 4.39e-31 | 120 |
| MsG0480019015.01.T01 | AT2G01760 | 45.238 | 126 | 66 | 3 | 7 | 129 | 4 | 129 | 1.39e-29 | 114 |
| MsG0480019015.01.T01 | AT3G16857 | 45.082 | 122 | 65 | 2 | 10 | 129 | 33 | 154 | 1.50e-28 | 113 |
| MsG0480019015.01.T01 | AT3G16857 | 45.082 | 122 | 65 | 2 | 10 | 129 | 33 | 154 | 1.71e-28 | 113 |
| MsG0480019015.01.T01 | AT2G01760 | 36.538 | 156 | 68 | 4 | 7 | 131 | 4 | 159 | 4.66e-24 | 99.8 |
| MsG0480019015.01.T01 | AT4G31920 | 39.344 | 122 | 72 | 2 | 10 | 129 | 13 | 134 | 1.30e-22 | 96.3 |
| MsG0480019015.01.T01 | AT2G25180 | 38.710 | 124 | 74 | 2 | 10 | 131 | 13 | 136 | 5.52e-22 | 94.7 |
| MsG0480019015.01.T01 | AT3G16857 | 44.578 | 83 | 44 | 2 | 49 | 129 | 2 | 84 | 7.46e-17 | 79.7 |
| MsG0480019015.01.T01 | AT1G49190 | 32.787 | 122 | 80 | 2 | 10 | 129 | 30 | 151 | 1.69e-15 | 75.5 |
| MsG0480019015.01.T01 | AT1G49190 | 32.787 | 122 | 80 | 2 | 10 | 129 | 30 | 151 | 2.00e-15 | 75.5 |
| MsG0480019015.01.T01 | AT5G49240 | 29.268 | 123 | 85 | 2 | 9 | 129 | 37 | 159 | 9.49e-15 | 72.4 |
| MsG0480019015.01.T01 | AT5G58080 | 34.426 | 122 | 77 | 3 | 10 | 129 | 14 | 134 | 7.09e-14 | 70.9 |
| MsG0480019015.01.T01 | AT1G67710 | 34.545 | 110 | 65 | 3 | 68 | 175 | 1 | 105 | 1.16e-13 | 70.1 |
| MsG0480019015.01.T01 | AT3G62670 | 28.358 | 134 | 89 | 4 | 27 | 158 | 52 | 180 | 7.62e-13 | 67.8 |
Find 53 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGATTCTCAAAATTA+TGG | 0.243357 | 4:-13320439 | MsG0480019015.01.T01:CDS |
| TTCAATGTGGGCCTGTATAT+TGG | 0.270271 | 4:-13320798 | MsG0480019015.01.T01:CDS |
| ACATGTTGCTAGTCATTTAC+AGG | 0.286115 | 4:-13320394 | MsG0480019015.01.T01:intron |
| ATCCTACCTTTACAACCTTA+TGG | 0.307805 | 4:-13320030 | MsG0480019015.01.T01:CDS |
| CTCAAAATTATGGATGTTCC+TGG | 0.317981 | 4:-13320429 | MsG0480019015.01.T01:CDS |
| CTTGAATTTGTTGGAAAGAA+AGG | 0.326280 | 4:-13321050 | MsG0480019015.01.T01:CDS |
| TGTATATTGGACTAAGCCTT+TGG | 0.365358 | 4:-13320785 | MsG0480019015.01.T01:CDS |
| TTCTGATGCCTTGAATTTGT+TGG | 0.373586 | 4:-13321059 | MsG0480019015.01.T01:CDS |
| AAAGTGACTAACCTTGATAA+TGG | 0.378712 | 4:+13321215 | None:intergenic |
| AATTATGGATGTTCCTGGTT+TGG | 0.386251 | 4:-13320424 | MsG0480019015.01.T01:CDS |
| ATTATGGATGTTCCTGGTTT+GGG | 0.388266 | 4:-13320423 | MsG0480019015.01.T01:CDS |
| CTTTCTTTCCAACAAATTCA+AGG | 0.396613 | 4:+13321051 | None:intergenic |
| TAGCTGAGTGGATTGATTGC+GGG | 0.403037 | 4:-13320058 | MsG0480019015.01.T01:CDS |
| ATCAGAAGCTGTGTTACATT+TGG | 0.412873 | 4:+13321075 | None:intergenic |
| CAGTTTGAAAGTTATCGTTC+TGG | 0.417272 | 4:+13320114 | None:intergenic |
| AAACTGCATATTAGGCCATA+AGG | 0.423301 | 4:+13320015 | None:intergenic |
| AATGTCGTTTGCAGAAATAT+AGG | 0.426550 | 4:-13320268 | MsG0480019015.01.T01:intron |
| GAGTGGATTGATTGCGGGAC+GGG | 0.433574 | 4:-13320053 | MsG0480019015.01.T01:CDS |
| TGTAATCGATTCCATTATCA+AGG | 0.450836 | 4:-13321226 | MsG0480019015.01.T01:intron |
| TCAAACTGAGCTGACTGATC+AGG | 0.459166 | 4:-13320099 | MsG0480019015.01.T01:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4:+13320938 | None:intergenic |
| TTGAGACCAGCAGGGAATGA+TGG | 0.467536 | 4:+13321301 | None:intergenic |
| AAGTCATAAGCATCCATGTT+TGG | 0.471983 | 4:+13320992 | None:intergenic |
| GATGTTCCTGGTTTGGGTGT+AGG | 0.487511 | 4:-13320417 | MsG0480019015.01.T01:CDS |
| CACTTTCCTCAACTCTATTG+AGG | 0.492388 | 4:-13321254 | MsG0480019015.01.T01:CDS |
| CAGCTAGAAAACCATCATTC+CGG | 0.492887 | 4:+13320075 | None:intergenic |
| GCAATAACCTTGAGACCAGC+AGG | 0.494358 | 4:+13321292 | None:intergenic |
| CTAGCTGAGTGGATTGATTG+CGG | 0.505708 | 4:-13320059 | MsG0480019015.01.T01:CDS |
| AAAGGCTTAGTCCAATATAC+AGG | 0.511075 | 4:+13320787 | None:intergenic |
| TAGGATTCATTTGAAGAGAT+CGG | 0.515087 | 4:-13320249 | MsG0480019015.01.T01:CDS |
| ATCATTCCCTGCTGGTCTCA+AGG | 0.520371 | 4:-13321299 | MsG0480019015.01.T01:CDS |
| ACTGATCAGGACCGGAATGA+TGG | 0.523712 | 4:-13320086 | MsG0480019015.01.T01:CDS |
| TCAAACTCAATCGATCGATC+AGG | 0.527821 | 4:-13320138 | MsG0480019015.01.T01:CDS |
| ATTAGGCCATAAGGTTGTAA+AGG | 0.531488 | 4:+13320024 | None:intergenic |
| TTGACGTCTTCTTCAACCAA+AGG | 0.537631 | 4:+13320769 | None:intergenic |
| GACAACCCATCATTCCCTGC+TGG | 0.539365 | 4:-13321307 | MsG0480019015.01.T01:CDS |
| TGAGACCAGCAGGGAATGAT+GGG | 0.539790 | 4:+13321302 | None:intergenic |
| TGGCAACATGTTGTCAGAAA+CGG | 0.543020 | 4:-13320739 | MsG0480019015.01.T01:intron |
| ATTGACAAGGTTCATAGTGA+TGG | 0.561362 | 4:-13320164 | MsG0480019015.01.T01:CDS |
| CTGAGCTGACTGATCAGGAC+CGG | 0.566450 | 4:-13320094 | MsG0480019015.01.T01:CDS |
| GAAAGTGATGTCATGATCAA+TGG | 0.586165 | 4:+13321270 | None:intergenic |
| TCAAGACGAGTGCATTGACA+AGG | 0.590781 | 4:-13320177 | MsG0480019015.01.T01:CDS |
| ATTATGAAGTCTATTCAATG+TGG | 0.593608 | 4:-13320811 | MsG0480019015.01.T01:CDS |
| TTATGAAGTCTATTCAATGT+GGG | 0.599103 | 4:-13320810 | MsG0480019015.01.T01:CDS |
| GGCCATAAGGTTGTAAAGGT+AGG | 0.602949 | 4:+13320028 | None:intergenic |
| TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4:-13321005 | MsG0480019015.01.T01:CDS |
| ACATGTCCTACACCCAAACC+AGG | 0.611300 | 4:+13320411 | None:intergenic |
| ACATCTCCTCAATAGAGTTG+AGG | 0.625514 | 4:+13321248 | None:intergenic |
| TGAGTGGATTGATTGCGGGA+CGG | 0.641804 | 4:-13320054 | MsG0480019015.01.T01:CDS |
| AAGAAGACGTCAAGAGCATG+TGG | 0.649026 | 4:-13320759 | MsG0480019015.01.T01:CDS |
| CGGCTGATGAAACAAAACGT+GGG | 0.694912 | 4:-13320229 | MsG0480019015.01.T01:CDS |
| CAATAACCTTGAGACCAGCA+GGG | 0.699486 | 4:+13321293 | None:intergenic |
| TCGGCTGATGAAACAAAACG+TGG | 0.707531 | 4:-13320230 | MsG0480019015.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGAATATGAAATTGT+TGG | - | Chr4:13320640-13320659 | MsG0480019015.01.T01:intron | 15.0% |
| !!! | ATAATTTTGAGAATCATTTT+GGG | + | Chr4:13320909-13320928 | None:intergenic | 15.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | Chr4:13320412-13320431 | None:intergenic | 20.0% |
| !! | CAAAATGATTCTCAAAATTA+TGG | - | Chr4:13320908-13320927 | MsG0480019015.01.T01:intron | 20.0% |
| !!! | CATAATTTTGAGAATCATTT+TGG | + | Chr4:13320910-13320929 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | - | Chr4:13320490-13320509 | MsG0480019015.01.T01:intron | 20.0% |
| ! | ACAAAGCAAAGAAAAGAATT+AGG | + | Chr4:13320824-13320843 | None:intergenic | 25.0% |
| ! | ATTATGAAGTCTATTCAATG+TGG | - | Chr4:13320536-13320555 | MsG0480019015.01.T01:intron | 25.0% |
| ! | TGGTTGAAGAAAATAGAAAA+CGG | - | Chr4:13320671-13320690 | MsG0480019015.01.T01:intron | 25.0% |
| ! | TTATGAAGTCTATTCAATGT+GGG | - | Chr4:13320537-13320556 | MsG0480019015.01.T01:intron | 25.0% |
| AAAAGATACACATGCAAAGA+AGG | - | Chr4:13320717-13320736 | MsG0480019015.01.T01:intron | 30.0% | |
| AAAGTGACTAACCTTGATAA+TGG | + | Chr4:13320135-13320154 | None:intergenic | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | Chr4:13320804-13320823 | None:intergenic | 30.0% | |
| ATATGAAATTGTTGGAAGCT+TGG | - | Chr4:13320648-13320667 | MsG0480019015.01.T01:intron | 30.0% | |
| CTTTCTTTCCAACAAATTCA+AGG | + | Chr4:13320299-13320318 | None:intergenic | 30.0% | |
| GGTTGAAGAAAATAGAAAAC+GGG | - | Chr4:13320672-13320691 | MsG0480019015.01.T01:intron | 30.0% | |
| GTTGAAGAAAATAGAAAACG+GGG | - | Chr4:13320673-13320692 | MsG0480019015.01.T01:intron | 30.0% | |
| TAGGATTCATTTGAAGAGAT+CGG | - | Chr4:13321098-13321117 | MsG0480019015.01.T01:intron | 30.0% | |
| ! | AATGTCGTTTGCAGAAATAT+AGG | - | Chr4:13321079-13321098 | MsG0480019015.01.T01:CDS | 30.0% |
| ! | TGTAATCGATTCCATTATCA+AGG | - | Chr4:13320121-13320140 | MsG0480019015.01.T01:CDS | 30.0% |
| ! | TTTGCATGTGTATCTTTTGA+GGG | + | Chr4:13320715-13320734 | None:intergenic | 30.0% |
| !! | CTTGAATTTGTTGGAAAGAA+AGG | - | Chr4:13320297-13320316 | MsG0480019015.01.T01:intron | 30.0% |
| !! | GTCATTTACAGGTTTGTTTT+CGG | - | Chr4:13320964-13320983 | MsG0480019015.01.T01:CDS | 30.0% |
| !!! | TGAGTTTTAGGGTAACATTT+TGG | + | Chr4:13320384-13320403 | None:intergenic | 30.0% |
| AAAGGCTTAGTCCAATATAC+AGG | + | Chr4:13320563-13320582 | None:intergenic | 35.0% | |
| AACTGCATCAACGATTTCTA+TGG | - | Chr4:13320761-13320780 | MsG0480019015.01.T01:CDS | 35.0% | |
| AAGTCATAAGCATCCATGTT+TGG | + | Chr4:13320358-13320377 | None:intergenic | 35.0% | |
| AATTATGGATGTTCCTGGTT+TGG | - | Chr4:13320923-13320942 | MsG0480019015.01.T01:intron | 35.0% | |
| ACATGTTGCTAGTCATTTAC+AGG | - | Chr4:13320953-13320972 | MsG0480019015.01.T01:CDS | 35.0% | |
| ACTGCATCAACGATTTCTAT+GGG | - | Chr4:13320762-13320781 | MsG0480019015.01.T01:CDS | 35.0% | |
| ATCAGAAGCTGTGTTACATT+TGG | + | Chr4:13320275-13320294 | None:intergenic | 35.0% | |
| ATCCTACCTTTACAACCTTA+TGG | - | Chr4:13321317-13321336 | MsG0480019015.01.T01:CDS | 35.0% | |
| ATTATGGATGTTCCTGGTTT+GGG | - | Chr4:13320924-13320943 | MsG0480019015.01.T01:intron | 35.0% | |
| ATTGACAAGGTTCATAGTGA+TGG | - | Chr4:13321183-13321202 | MsG0480019015.01.T01:intron | 35.0% | |
| CAGTTTGAAAGTTATCGTTC+TGG | + | Chr4:13321236-13321255 | None:intergenic | 35.0% | |
| CTCAAAATTATGGATGTTCC+TGG | - | Chr4:13320918-13320937 | MsG0480019015.01.T01:intron | 35.0% | |
| GAAAGTGATGTCATGATCAA+TGG | + | Chr4:13320080-13320099 | None:intergenic | 35.0% | |
| GTGGGAAGAAAAAATCAAAG+TGG | - | Chr4:13321136-13321155 | MsG0480019015.01.T01:intron | 35.0% | |
| TGTATATTGGACTAAGCCTT+TGG | - | Chr4:13320562-13320581 | MsG0480019015.01.T01:intron | 35.0% | |
| TTCTGATGCCTTGAATTTGT+TGG | - | Chr4:13320288-13320307 | MsG0480019015.01.T01:intron | 35.0% | |
| ! | CTTTGCATGTGTATCTTTTG+AGG | + | Chr4:13320716-13320735 | None:intergenic | 35.0% |
| ! | GACAGGAATGTTGAGTTTTA+GGG | + | Chr4:13320395-13320414 | None:intergenic | 35.0% |
| ! | TGACAGGAATGTTGAGTTTT+AGG | + | Chr4:13320396-13320415 | None:intergenic | 35.0% |
| ! | TTGCATGTGTATCTTTTGAG+GGG | + | Chr4:13320714-13320733 | None:intergenic | 35.0% |
| !! | TTTACAGGTTTGTTTTCGGA+AGG | - | Chr4:13320968-13320987 | MsG0480019015.01.T01:CDS | 35.0% |
| ACATCTCCTCAATAGAGTTG+AGG | + | Chr4:13320102-13320121 | None:intergenic | 40.0% | |
| AGAAATCGTTGATGCAGTTC+TGG | + | Chr4:13320760-13320779 | None:intergenic | 40.0% | |
| CACTTTCCTCAACTCTATTG+AGG | - | Chr4:13320093-13320112 | MsG0480019015.01.T01:CDS | 40.0% | |
| CAGCTAGAAAACCATCATTC+CGG | + | Chr4:13321275-13321294 | None:intergenic | 40.0% | |
| TCAAACTCAATCGATCGATC+AGG | - | Chr4:13321209-13321228 | MsG0480019015.01.T01:intron | 40.0% | |
| TGAAATTGTTGGAAGCTTGG+TGG | - | Chr4:13320651-13320670 | MsG0480019015.01.T01:intron | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | - | Chr4:13320342-13320361 | MsG0480019015.01.T01:intron | 40.0% | |
| TGGCAACATGTTGTCAGAAA+CGG | - | Chr4:13320608-13320627 | MsG0480019015.01.T01:intron | 40.0% | |
| TTCAATGTGGGCCTGTATAT+TGG | - | Chr4:13320549-13320568 | MsG0480019015.01.T01:intron | 40.0% | |
| TTGACGTCTTCTTCAACCAA+AGG | + | Chr4:13320581-13320600 | None:intergenic | 40.0% | |
| !!! | ATGATGGTTTTCTAGCTGAG+TGG | - | Chr4:13321277-13321296 | MsG0480019015.01.T01:CDS | 40.0% |
| CAATAACCTTGAGACCAGCA+GGG | + | Chr4:13320057-13320076 | None:intergenic | 45.0% | |
| CGGCTGATGAAACAAAACGT+GGG | - | Chr4:13321118-13321137 | MsG0480019015.01.T01:intron | 45.0% | |
| GGCCATAAGGTTGTAAAGGT+AGG | + | Chr4:13321322-13321341 | None:intergenic | 45.0% | |
| TCAAACTGAGCTGACTGATC+AGG | - | Chr4:13321248-13321267 | MsG0480019015.01.T01:CDS | 45.0% | |
| TCGGCTGATGAAACAAAACG+TGG | - | Chr4:13321117-13321136 | MsG0480019015.01.T01:intron | 45.0% | |
| ! | AAGAAGACGTCAAGAGCATG+TGG | - | Chr4:13320588-13320607 | MsG0480019015.01.T01:intron | 45.0% |
| ! | CTATGGGCTGTCAATCAACT+AGG | - | Chr4:13320778-13320797 | MsG0480019015.01.T01:CDS | 45.0% |
| ! | TCAAGACGAGTGCATTGACA+AGG | - | Chr4:13321170-13321189 | MsG0480019015.01.T01:intron | 45.0% |
| !! | CTAGCTGAGTGGATTGATTG+CGG | - | Chr4:13321288-13321307 | MsG0480019015.01.T01:CDS | 45.0% |
| !! | TAGCTGAGTGGATTGATTGC+GGG | - | Chr4:13321289-13321308 | MsG0480019015.01.T01:CDS | 45.0% |
| !! | TAGTATATTAATAATTTAAT+TGG | + | Chr4:13320997-13321016 | None:intergenic | 5.0% |
| ACATGTCCTACACCCAAACC+AGG | + | Chr4:13320939-13320958 | None:intergenic | 50.0% | |
| ACTGATCAGGACCGGAATGA+TGG | - | Chr4:13321261-13321280 | MsG0480019015.01.T01:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | Chr4:13320731-13320750 | MsG0480019015.01.T01:intron | 50.0% | |
| GCAATAACCTTGAGACCAGC+AGG | + | Chr4:13320058-13320077 | None:intergenic | 50.0% | |
| GTTCTGGCGACCAAGACAAA+CGG | + | Chr4:13320744-13320763 | None:intergenic | 50.0% | |
| TGAGACCAGCAGGGAATGAT+GGG | + | Chr4:13320048-13320067 | None:intergenic | 50.0% | |
| TTCTGGCGACCAAGACAAAC+GGG | + | Chr4:13320743-13320762 | None:intergenic | 50.0% | |
| TTGAGACCAGCAGGGAATGA+TGG | + | Chr4:13320049-13320068 | None:intergenic | 50.0% | |
| ! | ATCATTCCCTGCTGGTCTCA+AGG | - | Chr4:13320048-13320067 | MsG0480019015.01.T01:CDS | 50.0% |
| !! | GATGTTCCTGGTTTGGGTGT+AGG | - | Chr4:13320930-13320949 | MsG0480019015.01.T01:intron | 50.0% |
| !! | TGAGTGGATTGATTGCGGGA+CGG | - | Chr4:13321293-13321312 | MsG0480019015.01.T01:CDS | 50.0% |
| CTGAGCTGACTGATCAGGAC+CGG | - | Chr4:13321253-13321272 | MsG0480019015.01.T01:CDS | 55.0% | |
| GACAACCCATCATTCCCTGC+TGG | - | Chr4:13320040-13320059 | MsG0480019015.01.T01:CDS | 55.0% | |
| !! | GAGTGGATTGATTGCGGGAC+GGG | - | Chr4:13321294-13321313 | MsG0480019015.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 13320025 | 13321344 | 13320025 | ID=MsG0480019015.01;Name=MsG0480019015.01 |
| Chr4 | mRNA | 13320025 | 13321344 | 13320025 | ID=MsG0480019015.01.T01;Parent=MsG0480019015.01;Name=MsG0480019015.01.T01;_AED=0.35;_eAED=0.40;_QI=0|0|0|1|1|1|5|0|239 |
| Chr4 | exon | 13321227 | 13321344 | 13321227 | ID=MsG0480019015.01.T01:exon:8342;Parent=MsG0480019015.01.T01 |
| Chr4 | exon | 13320951 | 13321100 | 13320951 | ID=MsG0480019015.01.T01:exon:8341;Parent=MsG0480019015.01.T01 |
| Chr4 | exon | 13320740 | 13320862 | 13320740 | ID=MsG0480019015.01.T01:exon:8340;Parent=MsG0480019015.01.T01 |
| Chr4 | exon | 13320395 | 13320471 | 13320395 | ID=MsG0480019015.01.T01:exon:8339;Parent=MsG0480019015.01.T01 |
| Chr4 | exon | 13320025 | 13320276 | 13320025 | ID=MsG0480019015.01.T01:exon:8338;Parent=MsG0480019015.01.T01 |
| Chr4 | CDS | 13321227 | 13321344 | 13321227 | ID=MsG0480019015.01.T01:cds;Parent=MsG0480019015.01.T01 |
| Chr4 | CDS | 13320951 | 13321100 | 13320951 | ID=MsG0480019015.01.T01:cds;Parent=MsG0480019015.01.T01 |
| Chr4 | CDS | 13320740 | 13320862 | 13320740 | ID=MsG0480019015.01.T01:cds;Parent=MsG0480019015.01.T01 |
| Chr4 | CDS | 13320395 | 13320471 | 13320395 | ID=MsG0480019015.01.T01:cds;Parent=MsG0480019015.01.T01 |
| Chr4 | CDS | 13320025 | 13320276 | 13320025 | ID=MsG0480019015.01.T01:cds;Parent=MsG0480019015.01.T01 |
| Gene Sequence |
| Protein sequence |
