Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019029.01.T01 | XP_024628698.2 | 92.075 | 265 | 21 | 0 | 1 | 265 | 1 | 265 | 2.14E-176 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019029.01.T01 | Q9SZL8 | 33.75 | 240 | 150 | 6 | 33 | 265 | 46 | 283 | 5.08E-34 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019029.01.T01 | A0A2K3LW05 | 81.277 | 235 | 40 | 2 | 32 | 265 | 33 | 264 | 7.93e-135 | 394 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480019029.01.T01 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019029.01.T01 | MTR_0402s0040 | 92.500 | 200 | 15 | 0 | 33 | 232 | 1 | 200 | 7.56e-135 | 390 |
| MsG0480019029.01.T01 | MTR_6g017200 | 90.260 | 154 | 15 | 0 | 1 | 154 | 1 | 154 | 3.23e-101 | 292 |
| MsG0480019029.01.T01 | MTR_2g070590 | 89.831 | 118 | 12 | 0 | 44 | 161 | 3 | 120 | 4.66e-73 | 219 |
| MsG0480019029.01.T01 | MTR_1g057920 | 79.310 | 116 | 24 | 0 | 32 | 147 | 8 | 123 | 1.03e-62 | 193 |
| MsG0480019029.01.T01 | MTR_7g113010 | 65.132 | 152 | 38 | 2 | 32 | 182 | 431 | 568 | 2.60e-57 | 192 |
| MsG0480019029.01.T01 | MTR_5g015480 | 64.384 | 146 | 47 | 2 | 34 | 178 | 36 | 177 | 9.28e-55 | 177 |
| MsG0480019029.01.T01 | MTR_0291s0060 | 76.190 | 84 | 20 | 0 | 25 | 108 | 2 | 85 | 9.01e-39 | 131 |
| MsG0480019029.01.T01 | MTR_0137s0040 | 41.558 | 154 | 37 | 1 | 34 | 187 | 12 | 112 | 8.44e-32 | 114 |
| MsG0480019029.01.T01 | MTR_0558s0020 | 29.439 | 214 | 131 | 5 | 72 | 265 | 50 | 263 | 2.83e-26 | 104 |
| MsG0480019029.01.T01 | MTR_1g083640 | 28.571 | 224 | 140 | 5 | 62 | 265 | 55 | 278 | 1.93e-25 | 102 |
| MsG0480019029.01.T01 | MTR_7g074790 | 36.257 | 171 | 88 | 3 | 58 | 227 | 10 | 160 | 2.84e-25 | 100 |
| MsG0480019029.01.T01 | MTR_5g039760 | 35.385 | 195 | 97 | 6 | 62 | 253 | 14 | 182 | 4.12e-24 | 96.3 |
| MsG0480019029.01.T01 | MTR_1g050985 | 77.586 | 58 | 12 | 1 | 130 | 186 | 41 | 98 | 2.45e-23 | 91.7 |
| MsG0480019029.01.T01 | MTR_6g051425 | 27.830 | 212 | 134 | 7 | 66 | 265 | 25 | 229 | 1.80e-22 | 95.1 |
| MsG0480019029.01.T01 | MTR_0337s0040 | 33.103 | 145 | 95 | 2 | 121 | 263 | 78 | 222 | 2.23e-21 | 89.7 |
| MsG0480019029.01.T01 | MTR_6g090505 | 30.726 | 179 | 108 | 4 | 103 | 265 | 20 | 198 | 2.66e-21 | 92.0 |
| MsG0480019029.01.T01 | MTR_1g070355 | 28.111 | 217 | 141 | 7 | 58 | 265 | 72 | 282 | 4.67e-21 | 92.4 |
| MsG0480019029.01.T01 | MTR_8g446020 | 31.293 | 147 | 99 | 2 | 121 | 265 | 77 | 223 | 1.36e-19 | 85.9 |
| MsG0480019029.01.T01 | MTR_1g008290 | 32.374 | 139 | 89 | 2 | 114 | 251 | 7 | 141 | 1.39e-19 | 83.2 |
| MsG0480019029.01.T01 | MTR_4g102720 | 29.940 | 167 | 82 | 2 | 58 | 224 | 7 | 138 | 2.08e-19 | 84.7 |
| MsG0480019029.01.T01 | MTR_4g067290 | 39.683 | 126 | 65 | 4 | 58 | 181 | 56 | 172 | 2.57e-18 | 82.0 |
| MsG0480019029.01.T01 | MTR_7g061980 | 40.708 | 113 | 62 | 4 | 58 | 168 | 10 | 119 | 3.03e-18 | 78.6 |
| MsG0480019029.01.T01 | MTR_4g067290 | 39.683 | 126 | 65 | 4 | 58 | 181 | 76 | 192 | 3.42e-18 | 82.0 |
| MsG0480019029.01.T01 | MTR_4g067290 | 39.683 | 126 | 65 | 4 | 58 | 181 | 116 | 232 | 3.95e-18 | 82.4 |
| MsG0480019029.01.T01 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 58 | 162 | 56 | 158 | 5.21e-18 | 80.9 |
| MsG0480019029.01.T01 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 58 | 162 | 74 | 176 | 7.22e-18 | 80.9 |
| MsG0480019029.01.T01 | MTR_4g067290 | 42.056 | 107 | 56 | 3 | 58 | 162 | 76 | 178 | 7.75e-18 | 80.9 |
| MsG0480019029.01.T01 | MTR_5g076070 | 31.902 | 163 | 97 | 5 | 64 | 218 | 59 | 215 | 2.95e-17 | 79.7 |
| MsG0480019029.01.T01 | MTR_2g098920 | 40.187 | 107 | 58 | 3 | 58 | 162 | 80 | 182 | 3.24e-17 | 79.3 |
| MsG0480019029.01.T01 | MTR_1g091013 | 51.282 | 78 | 27 | 1 | 49 | 126 | 3 | 69 | 1.19e-15 | 70.1 |
| MsG0480019029.01.T01 | MTR_3g006370 | 38.462 | 104 | 62 | 2 | 58 | 160 | 50 | 152 | 4.05e-15 | 72.8 |
| MsG0480019029.01.T01 | MTR_4g035820 | 26.838 | 272 | 174 | 10 | 14 | 265 | 21 | 287 | 5.11e-15 | 75.1 |
| MsG0480019029.01.T01 | MTR_2g014100 | 23.737 | 198 | 132 | 4 | 62 | 240 | 48 | 245 | 1.70e-14 | 71.6 |
| MsG0480019029.01.T01 | MTR_7g446520 | 30.688 | 189 | 112 | 5 | 61 | 247 | 91 | 262 | 2.14e-14 | 72.4 |
| MsG0480019029.01.T01 | MTR_1g019850 | 29.282 | 181 | 107 | 5 | 12 | 190 | 35 | 196 | 9.25e-13 | 66.6 |
| MsG0480019029.01.T01 | MTR_2g098880 | 36.190 | 105 | 64 | 2 | 58 | 160 | 61 | 164 | 1.37e-12 | 66.2 |
| MsG0480019029.01.T01 | MTR_0019s0290 | 30.088 | 113 | 78 | 1 | 125 | 236 | 47 | 159 | 1.47e-12 | 64.3 |
| MsG0480019029.01.T01 | MTR_2g098880 | 36.190 | 105 | 64 | 2 | 58 | 160 | 73 | 176 | 1.57e-12 | 66.2 |
| MsG0480019029.01.T01 | MTR_1g055240 | 29.204 | 113 | 79 | 1 | 125 | 236 | 32 | 144 | 3.23e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019029.01.T01 | AT4G38180 | 33.750 | 240 | 150 | 6 | 33 | 265 | 46 | 283 | 5.18e-35 | 133 |
| MsG0480019029.01.T01 | AT1G10240 | 27.354 | 223 | 152 | 6 | 50 | 264 | 40 | 260 | 2.70e-20 | 90.5 |
| MsG0480019029.01.T01 | AT1G10240 | 27.354 | 223 | 152 | 6 | 50 | 264 | 40 | 260 | 2.70e-20 | 90.5 |
| MsG0480019029.01.T01 | AT3G59470 | 36.076 | 158 | 89 | 3 | 18 | 165 | 20 | 175 | 1.16e-19 | 85.9 |
| MsG0480019029.01.T01 | AT3G59470 | 36.076 | 158 | 89 | 3 | 18 | 165 | 20 | 175 | 1.16e-19 | 85.9 |
| MsG0480019029.01.T01 | AT3G59470 | 34.857 | 175 | 102 | 3 | 1 | 165 | 15 | 187 | 1.40e-19 | 85.9 |
| MsG0480019029.01.T01 | AT4G15090 | 25.714 | 210 | 153 | 3 | 58 | 265 | 51 | 259 | 1.56e-19 | 88.6 |
| MsG0480019029.01.T01 | AT4G15090 | 25.714 | 210 | 153 | 3 | 58 | 265 | 51 | 259 | 1.56e-19 | 88.6 |
| MsG0480019029.01.T01 | AT4G15090 | 25.714 | 210 | 153 | 3 | 58 | 265 | 51 | 259 | 1.56e-19 | 88.6 |
| MsG0480019029.01.T01 | AT4G15090 | 25.714 | 210 | 153 | 3 | 58 | 265 | 51 | 259 | 1.56e-19 | 88.6 |
| MsG0480019029.01.T01 | AT4G15090 | 25.714 | 210 | 153 | 3 | 58 | 265 | 51 | 259 | 1.56e-19 | 88.6 |
| MsG0480019029.01.T01 | AT4G12850 | 37.705 | 122 | 70 | 4 | 51 | 172 | 4 | 119 | 2.97e-17 | 76.6 |
| MsG0480019029.01.T01 | AT1G76320 | 26.699 | 206 | 139 | 5 | 62 | 265 | 1 | 196 | 5.45e-17 | 80.9 |
| MsG0480019029.01.T01 | AT1G76320 | 26.699 | 206 | 139 | 5 | 62 | 265 | 1 | 196 | 5.45e-17 | 80.9 |
| MsG0480019029.01.T01 | AT1G76320 | 26.699 | 206 | 139 | 5 | 62 | 265 | 1 | 196 | 5.93e-17 | 80.9 |
| MsG0480019029.01.T01 | AT4G12850 | 38.739 | 111 | 64 | 3 | 51 | 161 | 4 | 110 | 9.44e-17 | 75.1 |
| MsG0480019029.01.T01 | AT1G76320 | 26.699 | 206 | 139 | 5 | 62 | 265 | 1 | 196 | 9.73e-17 | 80.1 |
| MsG0480019029.01.T01 | AT4G12850 | 38.739 | 111 | 64 | 3 | 51 | 161 | 4 | 110 | 1.84e-16 | 75.9 |
| MsG0480019029.01.T01 | AT3G07500 | 40.000 | 105 | 62 | 1 | 58 | 162 | 33 | 136 | 3.26e-15 | 73.2 |
| MsG0480019029.01.T01 | AT3G06250 | 27.014 | 211 | 110 | 7 | 58 | 265 | 190 | 359 | 1.17e-14 | 73.9 |
| MsG0480019029.01.T01 | AT3G06250 | 37.500 | 104 | 49 | 3 | 58 | 160 | 28 | 116 | 1.15e-11 | 65.1 |
| MsG0480019029.01.T01 | AT3G06250 | 27.014 | 211 | 110 | 7 | 58 | 265 | 190 | 359 | 1.17e-14 | 73.9 |
| MsG0480019029.01.T01 | AT3G06250 | 37.500 | 104 | 49 | 3 | 58 | 160 | 28 | 116 | 1.15e-11 | 65.1 |
| MsG0480019029.01.T01 | AT3G06250 | 27.014 | 211 | 110 | 7 | 58 | 265 | 190 | 359 | 1.17e-14 | 73.9 |
| MsG0480019029.01.T01 | AT3G06250 | 37.500 | 104 | 49 | 3 | 58 | 160 | 28 | 116 | 1.15e-11 | 65.1 |
| MsG0480019029.01.T01 | AT2G43280 | 38.318 | 107 | 58 | 3 | 58 | 160 | 22 | 124 | 5.74e-14 | 69.3 |
| MsG0480019029.01.T01 | AT2G27110 | 27.391 | 230 | 130 | 10 | 43 | 265 | 31 | 230 | 1.08e-12 | 68.2 |
| MsG0480019029.01.T01 | AT2G27110 | 27.391 | 230 | 130 | 10 | 43 | 265 | 31 | 230 | 1.08e-12 | 68.2 |
| MsG0480019029.01.T01 | AT3G22170 | 26.606 | 218 | 123 | 8 | 62 | 265 | 74 | 268 | 2.13e-12 | 67.4 |
| MsG0480019029.01.T01 | AT3G22170 | 26.606 | 218 | 123 | 8 | 62 | 265 | 74 | 268 | 2.13e-12 | 67.4 |
| MsG0480019029.01.T01 | AT5G18960 | 37.383 | 107 | 51 | 3 | 58 | 163 | 43 | 134 | 4.35e-12 | 66.2 |
| MsG0480019029.01.T01 | AT5G18960 | 37.383 | 107 | 51 | 3 | 58 | 163 | 43 | 134 | 4.35e-12 | 66.2 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 1.27e-11 | 65.1 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 1.43e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 1.43e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 1.43e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 1.43e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 42 | 143 | 1.43e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 1 | 102 | 1.62e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G32250 | 30.189 | 106 | 70 | 2 | 62 | 167 | 1 | 102 | 1.62e-11 | 64.7 |
| MsG0480019029.01.T01 | AT2G43280 | 38.043 | 92 | 49 | 3 | 73 | 160 | 2 | 89 | 1.99e-11 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGATTGTGTCAATAAAT+TGG | 0.215486 | 4:-13509996 | MsG0480019029.01.T01:intron |
| CTTTAGTGACTGTTTCCTTT+TGG | 0.269240 | 4:+13509421 | None:intergenic |
| TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 4:-13509839 | MsG0480019029.01.T01:CDS |
| ATATATTCATGCAAATCTTT+TGG | 0.296908 | 4:+13509512 | None:intergenic |
| TCTGCTCTAGGCTCCCCTTT+TGG | 0.322934 | 4:+13509728 | None:intergenic |
| AATGAGTATAGTAAAAGAAT+TGG | 0.336174 | 4:-13509863 | MsG0480019029.01.T01:CDS |
| ATTGTCTTGGGAGATGAATA+TGG | 0.358947 | 4:-13509542 | MsG0480019029.01.T01:CDS |
| CTGTATTCCACCAGCTTGCT+TGG | 0.359827 | 4:+13509487 | None:intergenic |
| GGAAATAAAAGCAGAGTTGA+TGG | 0.361988 | 4:-13509818 | MsG0480019029.01.T01:CDS |
| TATAGTAAAAGAATTGGATT+TGG | 0.393932 | 4:-13509857 | MsG0480019029.01.T01:CDS |
| AGAAATTAGAACGGGATGTT+CGG | 0.397002 | 4:-13509708 | MsG0480019029.01.T01:CDS |
| CGAATTACCTTGAAACCAAA+AGG | 0.436415 | 4:-13509436 | MsG0480019029.01.T01:CDS |
| GTTCTATTATGACTTTCAAA+TGG | 0.442664 | 4:-13509342 | MsG0480019029.01.T01:CDS |
| AACGGGATGTTCGGCGCGTA+TGG | 0.445905 | 4:-13509699 | MsG0480019029.01.T01:CDS |
| GACAAAAGACGTCAACCAAA+AGG | 0.461065 | 4:-13509743 | MsG0480019029.01.T01:CDS |
| TAGTGTTGGTAGCAGGATGA+TGG | 0.465525 | 4:+13510335 | None:intergenic |
| CAATGGCAGCGGCGCTAGAA+TGG | 0.468527 | 4:+13510287 | None:intergenic |
| CACCTCGTACACCCTCTTTG+TGG | 0.472129 | 4:+13509768 | None:intergenic |
| GCTGCCATTGTTGTTGATCA+AGG | 0.480338 | 4:-13510274 | MsG0480019029.01.T01:intron |
| GGTTCGTTAGTGTTGGTAGC+AGG | 0.481503 | 4:+13510328 | None:intergenic |
| CCCGTTCTAATTTCTGCTCT+AGG | 0.484916 | 4:+13509716 | None:intergenic |
| AGTGTTGGTAGCAGGATGAT+GGG | 0.490017 | 4:+13510336 | None:intergenic |
| TGGTCGGAGACGGCGGCGAC+GGG | 0.493538 | 4:+13510307 | None:intergenic |
| ACAAAAGACGTCAACCAAAA+GGG | 0.496414 | 4:-13509742 | MsG0480019029.01.T01:CDS |
| ACAAGCATCACAAATTGTCT+TGG | 0.503759 | 4:-13509555 | MsG0480019029.01.T01:CDS |
| CGAATCATATGAACATGCTC+AGG | 0.508001 | 4:+13509602 | None:intergenic |
| TGCGAACAATGTACCTCACT+TGG | 0.508576 | 4:-13509927 | MsG0480019029.01.T01:CDS |
| TGGTTTCAAGGTAATTCGTA+AGG | 0.515695 | 4:+13509441 | None:intergenic |
| CAAGCATCACAAATTGTCTT+GGG | 0.518135 | 4:-13509554 | MsG0480019029.01.T01:CDS |
| GGAAATGAAGTTTGATTCTG+AGG | 0.518232 | 4:-13509906 | MsG0480019029.01.T01:CDS |
| CAAAATGTGCAACACGGACT+AGG | 0.518753 | 4:-13509956 | MsG0480019029.01.T01:CDS |
| CCTAGAGCAGAAATTAGAAC+GGG | 0.531792 | 4:-13509716 | MsG0480019029.01.T01:CDS |
| ATGGTCGGAGACGGCGGCGA+CGG | 0.532705 | 4:+13510306 | None:intergenic |
| GGCGACGGGTTCGTTAGTGT+TGG | 0.541693 | 4:+13510321 | None:intergenic |
| GAAGTTTGATTCTGAGGCGG+CGG | 0.545649 | 4:-13509900 | MsG0480019029.01.T01:CDS |
| GGCGCTAGAATGGTCGGAGA+CGG | 0.546289 | 4:+13510297 | None:intergenic |
| TCACTAAAGTATAGTGAGGT+GGG | 0.567839 | 4:-13509407 | MsG0480019029.01.T01:CDS |
| GGCAGCGGCGCTAGAATGGT+CGG | 0.570384 | 4:+13510291 | None:intergenic |
| GTCACTAAAGTATAGTGAGG+TGG | 0.577558 | 4:-13509408 | MsG0480019029.01.T01:CDS |
| GTGTTGGTAGCAGGATGATG+GGG | 0.582430 | 4:+13510337 | None:intergenic |
| GTATGGTTATTTCACTCGAT+CGG | 0.586251 | 4:-13509682 | MsG0480019029.01.T01:CDS |
| TATATATCCAAGCAAGCTGG+TGG | 0.588298 | 4:-13509494 | MsG0480019029.01.T01:CDS |
| GAATATATATCCAAGCAAGC+TGG | 0.590655 | 4:-13509497 | MsG0480019029.01.T01:CDS |
| GCTGGTGGAATACAGACAGT+TGG | 0.597501 | 4:-13509479 | MsG0480019029.01.T01:CDS |
| CATGCTCAGGTTGAAGTTGG+TGG | 0.600927 | 4:+13509615 | None:intergenic |
| TCAAACTTCATTTCCAAGTG+AGG | 0.602359 | 4:+13509914 | None:intergenic |
| GCCTAGAGCAGAAATTAGAA+CGG | 0.602891 | 4:-13509717 | MsG0480019029.01.T01:CDS |
| GCTAGAATGGTCGGAGACGG+CGG | 0.605325 | 4:+13510300 | None:intergenic |
| CAAAAGACGTCAACCAAAAG+GGG | 0.607006 | 4:-13509741 | MsG0480019029.01.T01:CDS |
| GAACATGCTCAGGTTGAAGT+TGG | 0.607804 | 4:+13509612 | None:intergenic |
| AGATTCACATGCCACAAAGA+GGG | 0.622687 | 4:-13509779 | MsG0480019029.01.T01:CDS |
| TTGATCAACAACAATGGCAG+CGG | 0.627743 | 4:+13510276 | None:intergenic |
| AAGATTCACATGCCACAAAG+AGG | 0.635428 | 4:-13509780 | MsG0480019029.01.T01:CDS |
| AATGAAGTTTGATTCTGAGG+CGG | 0.641025 | 4:-13509903 | MsG0480019029.01.T01:CDS |
| ATTACCTTGATCAACAACAA+TGG | 0.649121 | 4:+13510270 | None:intergenic |
| TGAAAGTCATAATAGAACGA+GGG | 0.653626 | 4:+13509347 | None:intergenic |
| CATGAACAAAATGTGCAACA+CGG | 0.658217 | 4:-13509962 | MsG0480019029.01.T01:CDS |
| TGCCACAAAGAGGGTGTACG+AGG | 0.663321 | 4:-13509770 | MsG0480019029.01.T01:CDS |
| ACAGTCACTAAAGTATAGTG+AGG | 0.678827 | 4:-13509411 | MsG0480019029.01.T01:CDS |
| TTGAAAGTCATAATAGAACG+AGG | 0.700448 | 4:+13509346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACCAAAATTTACAATTA+AGG | + | Chr4:13509640-13509659 | None:intergenic | 15.0% |
| !!! | TATACATATATATAGCTTTA+TGG | - | Chr4:13509524-13509543 | MsG0480019029.01.T01:CDS | 15.0% |
| !! | AATGAGTATAGTAAAAGAAT+TGG | - | Chr4:13509793-13509812 | MsG0480019029.01.T01:CDS | 20.0% |
| !! | GACAAATAATAAAATAGAGA+AGG | + | Chr4:13509420-13509439 | None:intergenic | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | - | Chr4:13509799-13509818 | MsG0480019029.01.T01:CDS | 20.0% |
| !!! | ATATATTCATGCAAATCTTT+TGG | + | Chr4:13510147-13510166 | None:intergenic | 20.0% |
| !!! | TTGATGAAAAATTAGTTTCT+AGG | - | Chr4:13509472-13509491 | MsG0480019029.01.T01:CDS | 20.0% |
| ! | ATGTATGAAATCATCACTTA+TGG | - | Chr4:13509611-13509630 | MsG0480019029.01.T01:CDS | 25.0% |
| ! | GTTCTATTATGACTTTCAAA+TGG | - | Chr4:13510314-13510333 | MsG0480019029.01.T01:CDS | 25.0% |
| ! | TTCAGATTGTGTCAATAAAT+TGG | - | Chr4:13509660-13509679 | MsG0480019029.01.T01:CDS | 25.0% |
| ATTACCTTGATCAACAACAA+TGG | + | Chr4:13509389-13509408 | None:intergenic | 30.0% | |
| TATGAAATCATCACTTATGG+TGG | - | Chr4:13509614-13509633 | MsG0480019029.01.T01:CDS | 30.0% | |
| TGAAAGTCATAATAGAACGA+GGG | + | Chr4:13510312-13510331 | None:intergenic | 30.0% | |
| TTGAAAGTCATAATAGAACG+AGG | + | Chr4:13510313-13510332 | None:intergenic | 30.0% | |
| !! | GTGGCCTTAATTGTAAATTT+TGG | - | Chr4:13509633-13509652 | MsG0480019029.01.T01:CDS | 30.0% |
| ACAAAAGACGTCAACCAAAA+GGG | - | Chr4:13509914-13509933 | MsG0480019029.01.T01:CDS | 35.0% | |
| ACAAGCATCACAAATTGTCT+TGG | - | Chr4:13510101-13510120 | MsG0480019029.01.T01:intron | 35.0% | |
| ACAGTCACTAAAGTATAGTG+AGG | - | Chr4:13510245-13510264 | MsG0480019029.01.T01:intron | 35.0% | |
| AGAAATTAGAACGGGATGTT+CGG | - | Chr4:13509948-13509967 | MsG0480019029.01.T01:CDS | 35.0% | |
| ATTGTCTTGGGAGATGAATA+TGG | - | Chr4:13510114-13510133 | MsG0480019029.01.T01:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | - | Chr4:13510102-13510121 | MsG0480019029.01.T01:intron | 35.0% | |
| CATGAACAAAATGTGCAACA+CGG | - | Chr4:13509694-13509713 | MsG0480019029.01.T01:CDS | 35.0% | |
| CGAATTACCTTGAAACCAAA+AGG | - | Chr4:13510220-13510239 | MsG0480019029.01.T01:intron | 35.0% | |
| GAATATATATCCAAGCAAGC+TGG | - | Chr4:13510159-13510178 | MsG0480019029.01.T01:intron | 35.0% | |
| GGAAATAAAAGCAGAGTTGA+TGG | - | Chr4:13509838-13509857 | MsG0480019029.01.T01:CDS | 35.0% | |
| GGAAATGAAGTTTGATTCTG+AGG | - | Chr4:13509750-13509769 | MsG0480019029.01.T01:CDS | 35.0% | |
| TCAAACTTCATTTCCAAGTG+AGG | + | Chr4:13509745-13509764 | None:intergenic | 35.0% | |
| TCACTAAAGTATAGTGAGGT+GGG | - | Chr4:13510249-13510268 | MsG0480019029.01.T01:intron | 35.0% | |
| TGGTTTCAAGGTAATTCGTA+AGG | + | Chr4:13510218-13510237 | None:intergenic | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | - | Chr4:13509817-13509836 | MsG0480019029.01.T01:CDS | 35.0% | |
| ! | AATGAAGTTTGATTCTGAGG+CGG | - | Chr4:13509753-13509772 | MsG0480019029.01.T01:CDS | 35.0% |
| ! | CTTTAGTGACTGTTTCCTTT+TGG | + | Chr4:13510238-13510257 | None:intergenic | 35.0% |
| ! | GTATGGTTATTTCACTCGAT+CGG | - | Chr4:13509974-13509993 | MsG0480019029.01.T01:CDS | 35.0% |
| !!! | ACTGTTTCCTTTTGGTTTCA+AGG | + | Chr4:13510230-13510249 | None:intergenic | 35.0% |
| AAGATTCACATGCCACAAAG+AGG | - | Chr4:13509876-13509895 | MsG0480019029.01.T01:CDS | 40.0% | |
| AGATTCACATGCCACAAAGA+GGG | - | Chr4:13509877-13509896 | MsG0480019029.01.T01:CDS | 40.0% | |
| CAAAAGACGTCAACCAAAAG+GGG | - | Chr4:13509915-13509934 | MsG0480019029.01.T01:CDS | 40.0% | |
| CCTAGAGCAGAAATTAGAAC+GGG | - | Chr4:13509940-13509959 | MsG0480019029.01.T01:CDS | 40.0% | |
| CGAATCATATGAACATGCTC+AGG | + | Chr4:13510057-13510076 | None:intergenic | 40.0% | |
| GACAAAAGACGTCAACCAAA+AGG | - | Chr4:13509913-13509932 | MsG0480019029.01.T01:CDS | 40.0% | |
| GCCTAGAGCAGAAATTAGAA+CGG | - | Chr4:13509939-13509958 | MsG0480019029.01.T01:CDS | 40.0% | |
| GGTCACTATGTGTGTAACTT+CGG | - | Chr4:13509545-13509564 | MsG0480019029.01.T01:CDS | 40.0% | |
| GTCACTAAAGTATAGTGAGG+TGG | - | Chr4:13510248-13510267 | MsG0480019029.01.T01:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | - | Chr4:13510162-13510181 | MsG0480019029.01.T01:intron | 40.0% | |
| TTGATCAACAACAATGGCAG+CGG | + | Chr4:13509383-13509402 | None:intergenic | 40.0% | |
| CAAAATGTGCAACACGGACT+AGG | - | Chr4:13509700-13509719 | MsG0480019029.01.T01:CDS | 45.0% | |
| CCCGTTCTAATTTCTGCTCT+AGG | + | Chr4:13509943-13509962 | None:intergenic | 45.0% | |
| TGCGAACAATGTACCTCACT+TGG | - | Chr4:13509729-13509748 | MsG0480019029.01.T01:CDS | 45.0% | |
| ! | GCTGCCATTGTTGTTGATCA+AGG | - | Chr4:13509382-13509401 | MsG0480019029.01.T01:CDS | 45.0% |
| !! | AGTGTTGGTAGCAGGATGAT+GGG | + | Chr4:13509323-13509342 | None:intergenic | 45.0% |
| !! | GAACATGCTCAGGTTGAAGT+TGG | + | Chr4:13510047-13510066 | None:intergenic | 45.0% |
| !! | TAGTGTTGGTAGCAGGATGA+TGG | + | Chr4:13509324-13509343 | None:intergenic | 45.0% |
| GCTGGTGGAATACAGACAGT+TGG | - | Chr4:13510177-13510196 | MsG0480019029.01.T01:intron | 50.0% | |
| ! | CTGTATTCCACCAGCTTGCT+TGG | + | Chr4:13510172-13510191 | None:intergenic | 50.0% |
| !! | CATGCTCAGGTTGAAGTTGG+TGG | + | Chr4:13510044-13510063 | None:intergenic | 50.0% |
| !! | GAAGTTTGATTCTGAGGCGG+CGG | - | Chr4:13509756-13509775 | MsG0480019029.01.T01:CDS | 50.0% |
| !! | GGTTCGTTAGTGTTGGTAGC+AGG | + | Chr4:13509331-13509350 | None:intergenic | 50.0% |
| !! | GTGTTGGTAGCAGGATGATG+GGG | + | Chr4:13509322-13509341 | None:intergenic | 50.0% |
| CACCTCGTACACCCTCTTTG+TGG | + | Chr4:13509891-13509910 | None:intergenic | 55.0% | |
| ! | TGCCACAAAGAGGGTGTACG+AGG | - | Chr4:13509886-13509905 | MsG0480019029.01.T01:CDS | 55.0% |
| !! | TCTGCTCTAGGCTCCCCTTT+TGG | + | Chr4:13509931-13509950 | None:intergenic | 55.0% |
| AACGGGATGTTCGGCGCGTA+TGG | - | Chr4:13509957-13509976 | MsG0480019029.01.T01:CDS | 60.0% | |
| CAATGGCAGCGGCGCTAGAA+TGG | + | Chr4:13509372-13509391 | None:intergenic | 60.0% | |
| GCTAGAATGGTCGGAGACGG+CGG | + | Chr4:13509359-13509378 | None:intergenic | 60.0% | |
| GGCGCTAGAATGGTCGGAGA+CGG | + | Chr4:13509362-13509381 | None:intergenic | 60.0% | |
| ! | GGCGACGGGTTCGTTAGTGT+TGG | + | Chr4:13509338-13509357 | None:intergenic | 60.0% |
| GGCAGCGGCGCTAGAATGGT+CGG | + | Chr4:13509368-13509387 | None:intergenic | 65.0% | |
| ATGGTCGGAGACGGCGGCGA+CGG | + | Chr4:13509353-13509372 | None:intergenic | 70.0% | |
| TGGTCGGAGACGGCGGCGAC+GGG | + | Chr4:13509352-13509371 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 13509310 | 13510368 | 13509310 | ID=MsG0480019029.01;Name=MsG0480019029.01 |
| Chr4 | mRNA | 13509310 | 13510368 | 13509310 | ID=MsG0480019029.01.T01;Parent=MsG0480019029.01;Name=MsG0480019029.01.T01;_AED=0.31;_eAED=0.32;_QI=0|0|0|1|1|1|2|0|265 |
| Chr4 | exon | 13510275 | 13510368 | 13510275 | ID=MsG0480019029.01.T01:exon:8451;Parent=MsG0480019029.01.T01 |
| Chr4 | exon | 13509310 | 13510013 | 13509310 | ID=MsG0480019029.01.T01:exon:8450;Parent=MsG0480019029.01.T01 |
| Chr4 | CDS | 13510275 | 13510368 | 13510275 | ID=MsG0480019029.01.T01:cds;Parent=MsG0480019029.01.T01 |
| Chr4 | CDS | 13509310 | 13510013 | 13509310 | ID=MsG0480019029.01.T01:cds;Parent=MsG0480019029.01.T01 |
| Gene Sequence |
| Protein sequence |
