Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019439.01.T01 | XP_003605525.1 | 76.623 | 231 | 54 | 0 | 1 | 231 | 1 | 231 | 6.12E-127 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019439.01.T01 | Q9FJK3 | 54.658 | 161 | 72 | 1 | 1 | 161 | 1 | 160 | 1.55E-50 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019439.01.T01 | G7JN85 | 76.623 | 231 | 54 | 0 | 1 | 231 | 1 | 231 | 2.92e-127 | 368 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480019439.01.T01 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019439.01.T01 | MTR_4g032620 | 76.623 | 231 | 54 | 0 | 1 | 231 | 1 | 231 | 7.41e-131 | 368 |
| MsG0480019439.01.T01 | MTR_8g036130 | 58.300 | 247 | 87 | 3 | 1 | 231 | 1 | 247 | 2.46e-89 | 264 |
| MsG0480019439.01.T01 | MTR_4g031910 | 52.991 | 234 | 102 | 2 | 1 | 231 | 1 | 229 | 4.88e-75 | 227 |
| MsG0480019439.01.T01 | MTR_4g032290 | 52.869 | 244 | 89 | 4 | 1 | 231 | 1 | 231 | 9.06e-70 | 213 |
| MsG0480019439.01.T01 | MTR_3g065100 | 49.138 | 232 | 108 | 2 | 1 | 223 | 1 | 231 | 2.42e-58 | 185 |
| MsG0480019439.01.T01 | MTR_4g032260 | 63.462 | 156 | 57 | 0 | 1 | 156 | 1 | 156 | 2.54e-58 | 182 |
| MsG0480019439.01.T01 | MTR_3g466980 | 44.286 | 210 | 104 | 3 | 1 | 198 | 1 | 209 | 2.58e-54 | 174 |
| MsG0480019439.01.T01 | MTR_3g466830 | 45.963 | 161 | 82 | 2 | 3 | 161 | 2 | 159 | 5.50e-46 | 150 |
| MsG0480019439.01.T01 | MTR_2g035610 | 63.636 | 121 | 44 | 0 | 1 | 121 | 1 | 121 | 2.70e-45 | 147 |
| MsG0480019439.01.T01 | MTR_5g047580 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 8.81e-42 | 139 |
| MsG0480019439.01.T01 | MTR_1g090697 | 41.772 | 158 | 90 | 2 | 1 | 158 | 1 | 156 | 2.17e-39 | 133 |
| MsG0480019439.01.T01 | MTR_4g063790 | 43.226 | 155 | 88 | 0 | 1 | 155 | 1 | 155 | 3.97e-39 | 133 |
| MsG0480019439.01.T01 | MTR_3g466890 | 43.671 | 158 | 84 | 2 | 3 | 158 | 2 | 156 | 8.72e-38 | 129 |
| MsG0480019439.01.T01 | MTR_1g077390 | 39.744 | 156 | 92 | 2 | 1 | 156 | 1 | 154 | 3.26e-37 | 128 |
| MsG0480019439.01.T01 | MTR_1g090710 | 39.241 | 158 | 95 | 1 | 1 | 158 | 1 | 157 | 6.65e-37 | 127 |
| MsG0480019439.01.T01 | MTR_1g084950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 3.71e-36 | 125 |
| MsG0480019439.01.T01 | MTR_7g011950 | 42.949 | 156 | 87 | 2 | 1 | 156 | 1 | 154 | 5.24e-36 | 125 |
| MsG0480019439.01.T01 | MTR_3g467080 | 38.462 | 156 | 96 | 0 | 1 | 156 | 1 | 156 | 4.90e-35 | 122 |
| MsG0480019439.01.T01 | MTR_4g028720 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 9.84e-35 | 122 |
| MsG0480019439.01.T01 | MTR_3g031100 | 38.182 | 165 | 102 | 0 | 1 | 165 | 1 | 165 | 1.16e-34 | 124 |
| MsG0480019439.01.T01 | MTR_1g090783 | 40.260 | 154 | 90 | 2 | 3 | 156 | 2 | 153 | 1.72e-34 | 121 |
| MsG0480019439.01.T01 | MTR_2g016210 | 37.805 | 164 | 102 | 0 | 1 | 164 | 1 | 164 | 2.43e-34 | 123 |
| MsG0480019439.01.T01 | MTR_4g028800 | 77.778 | 72 | 14 | 1 | 1 | 72 | 1 | 70 | 6.50e-34 | 117 |
| MsG0480019439.01.T01 | MTR_5g075380 | 38.312 | 154 | 94 | 1 | 1 | 154 | 1 | 153 | 3.77e-32 | 115 |
| MsG0480019439.01.T01 | MTR_3g031240 | 33.333 | 162 | 108 | 0 | 1 | 162 | 1 | 162 | 5.90e-31 | 112 |
| MsG0480019439.01.T01 | MTR_1g077320 | 38.462 | 156 | 94 | 2 | 1 | 156 | 1 | 154 | 3.62e-30 | 110 |
| MsG0480019439.01.T01 | MTR_3g465410 | 42.063 | 126 | 73 | 0 | 29 | 154 | 1 | 126 | 1.07e-27 | 103 |
| MsG0480019439.01.T01 | MTR_1g077300 | 39.103 | 156 | 91 | 2 | 1 | 156 | 1 | 152 | 9.21e-27 | 101 |
| MsG0480019439.01.T01 | MTR_7g055800 | 47.059 | 119 | 35 | 2 | 1 | 119 | 1 | 91 | 1.17e-26 | 99.0 |
| MsG0480019439.01.T01 | MTR_5g047560 | 40.476 | 126 | 58 | 2 | 1 | 126 | 1 | 109 | 4.72e-26 | 99.0 |
| MsG0480019439.01.T01 | MTR_3g466900 | 37.008 | 127 | 79 | 1 | 32 | 158 | 2 | 127 | 3.11e-25 | 96.7 |
| MsG0480019439.01.T01 | MTR_3g466930 | 38.760 | 129 | 74 | 2 | 32 | 158 | 2 | 127 | 3.93e-25 | 96.3 |
| MsG0480019439.01.T01 | MTR_2g035580 | 35.256 | 156 | 100 | 1 | 1 | 156 | 1 | 155 | 3.72e-24 | 94.7 |
| MsG0480019439.01.T01 | MTR_4g032270 | 48.485 | 99 | 46 | 3 | 135 | 231 | 36 | 131 | 2.54e-22 | 89.0 |
| MsG0480019439.01.T01 | MTR_4g019670 | 35.294 | 119 | 77 | 0 | 1 | 119 | 4 | 122 | 1.37e-21 | 93.2 |
| MsG0480019439.01.T01 | MTR_7g106510 | 34.454 | 119 | 78 | 0 | 1 | 119 | 4 | 122 | 1.38e-21 | 92.8 |
| MsG0480019439.01.T01 | MTR_7g055940 | 46.667 | 105 | 28 | 2 | 1 | 105 | 1 | 77 | 3.98e-21 | 84.3 |
| MsG0480019439.01.T01 | MTR_7g055790 | 47.273 | 110 | 40 | 1 | 1 | 110 | 59 | 150 | 1.05e-20 | 85.5 |
| MsG0480019439.01.T01 | MTR_3g093900 | 35.000 | 120 | 75 | 1 | 1 | 120 | 4 | 120 | 1.01e-17 | 82.0 |
| MsG0480019439.01.T01 | MTR_6g018920 | 36.752 | 117 | 67 | 4 | 1 | 111 | 1 | 116 | 7.44e-15 | 72.8 |
| MsG0480019439.01.T01 | MTR_1g114730 | 35.043 | 117 | 61 | 4 | 1 | 103 | 1 | 116 | 7.20e-14 | 70.1 |
| MsG0480019439.01.T01 | MTR_2g035590 | 46.067 | 89 | 48 | 0 | 74 | 162 | 1 | 89 | 2.85e-13 | 64.3 |
| MsG0480019439.01.T01 | MTR_6g005440 | 38.983 | 118 | 57 | 5 | 1 | 104 | 1 | 117 | 2.97e-13 | 68.2 |
| MsG0480019439.01.T01 | MTR_6g005450 | 35.593 | 118 | 69 | 4 | 1 | 112 | 1 | 117 | 4.66e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019439.01.T01 | AT5G48670 | 54.658 | 161 | 72 | 1 | 1 | 161 | 1 | 160 | 1.58e-51 | 170 |
| MsG0480019439.01.T01 | AT5G26630 | 38.743 | 191 | 115 | 2 | 1 | 190 | 1 | 190 | 3.18e-36 | 127 |
| MsG0480019439.01.T01 | AT1G65300 | 39.286 | 168 | 101 | 1 | 3 | 170 | 2 | 168 | 6.69e-36 | 128 |
| MsG0480019439.01.T01 | AT5G27810 | 50.442 | 113 | 56 | 0 | 29 | 141 | 1 | 113 | 1.18e-35 | 123 |
| MsG0480019439.01.T01 | AT5G26650 | 37.640 | 178 | 110 | 1 | 4 | 181 | 2 | 178 | 2.79e-34 | 126 |
| MsG0480019439.01.T01 | AT3G05860 | 40.667 | 150 | 88 | 1 | 1 | 150 | 1 | 149 | 6.69e-34 | 121 |
| MsG0480019439.01.T01 | AT5G27960 | 37.079 | 178 | 111 | 1 | 4 | 181 | 2 | 178 | 7.60e-34 | 124 |
| MsG0480019439.01.T01 | AT1G65330 | 39.181 | 171 | 101 | 2 | 3 | 173 | 2 | 169 | 1.68e-33 | 122 |
| MsG0480019439.01.T01 | AT3G05860 | 40.667 | 150 | 88 | 1 | 1 | 150 | 1 | 149 | 2.46e-33 | 120 |
| MsG0480019439.01.T01 | AT3G05860 | 40.667 | 150 | 88 | 1 | 1 | 150 | 1 | 149 | 2.99e-33 | 121 |
| MsG0480019439.01.T01 | AT1G31630 | 33.333 | 174 | 112 | 3 | 3 | 176 | 2 | 171 | 6.61e-29 | 111 |
| MsG0480019439.01.T01 | AT1G31640 | 34.437 | 151 | 97 | 2 | 3 | 153 | 2 | 150 | 5.33e-27 | 108 |
| MsG0480019439.01.T01 | AT2G28700 | 34.868 | 152 | 94 | 2 | 1 | 150 | 1 | 149 | 7.49e-27 | 105 |
| MsG0480019439.01.T01 | AT1G22590 | 30.769 | 156 | 104 | 1 | 1 | 156 | 1 | 152 | 7.45e-24 | 94.0 |
| MsG0480019439.01.T01 | AT5G26580 | 35.484 | 155 | 85 | 2 | 1 | 155 | 1 | 140 | 3.20e-23 | 96.3 |
| MsG0480019439.01.T01 | AT5G06500 | 35.065 | 154 | 98 | 1 | 1 | 154 | 1 | 152 | 2.46e-22 | 92.0 |
| MsG0480019439.01.T01 | AT2G40210 | 42.857 | 119 | 68 | 0 | 1 | 119 | 1 | 119 | 8.51e-21 | 89.7 |
| MsG0480019439.01.T01 | AT5G58890 | 36.607 | 112 | 62 | 4 | 1 | 105 | 1 | 110 | 5.14e-13 | 67.4 |
| MsG0480019439.01.T01 | AT5G55690 | 41.772 | 79 | 39 | 2 | 1 | 72 | 1 | 79 | 1.55e-12 | 65.9 |
| MsG0480019439.01.T01 | AT5G55690 | 41.772 | 79 | 39 | 2 | 1 | 72 | 1 | 79 | 1.55e-12 | 65.9 |
Find 60 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCTTGTGCCATAATTTA+TGG | 0.086162 | 4:+20454093 | MsG0480019439.01.T01:CDS |
| CACAACAATGACTAGGAAAA+AGG | 0.228363 | 4:+20453963 | None:intergenic |
| TCTTCATTACTAAATGTAAA+TGG | 0.248590 | 4:-20454483 | None:intergenic |
| TTCATTTAAGGTAGTAGATT+TGG | 0.253282 | 4:-20454648 | None:intergenic |
| ATGTAAATGGTGGTGGTATT+TGG | 0.283899 | 4:-20454470 | None:intergenic |
| TCATCGTAGATGATGATTCT+AGG | 0.316191 | 4:+20453998 | MsG0480019439.01.T01:CDS |
| CATTGAAAGTCAATCTTTCA+TGG | 0.320633 | 4:+20454560 | MsG0480019439.01.T01:CDS |
| TACATTTAGTAATGAAGAAA+TGG | 0.347896 | 4:+20454488 | MsG0480019439.01.T01:CDS |
| ATGTTGTTGCCATTATTCAT+AGG | 0.359690 | 4:-20454540 | None:intergenic |
| TACCAACCTCCTTCAATTTG+TGG | 0.372241 | 4:-20454401 | None:intergenic |
| GGAAAGCAACATACAATAGA+AGG | 0.409123 | 4:+20454019 | MsG0480019439.01.T01:CDS |
| TAATGAAGAAATGGCAATGA+TGG | 0.426450 | 4:+20454497 | MsG0480019439.01.T01:CDS |
| GGAGATGAGTCGGTGCCATT+TGG | 0.429830 | 4:+20454603 | MsG0480019439.01.T01:CDS |
| TGTGGTGACGGCCAGATCTC+TGG | 0.431268 | 4:-20454132 | None:intergenic |
| AATTGAAGGAGGTTGGTAGA+AGG | 0.442772 | 4:+20454406 | MsG0480019439.01.T01:CDS |
| GAAGGAGGTTGGTAGAAGGT+TGG | 0.444882 | 4:+20454410 | MsG0480019439.01.T01:CDS |
| GCTGGAATGCCTATGAATAA+TGG | 0.448862 | 4:+20454531 | MsG0480019439.01.T01:CDS |
| AAGAAACTTACATGAAAGAA+AGG | 0.450776 | 4:+20454226 | MsG0480019439.01.T01:CDS |
| TATGCTGAATAATATGTCAT+TGG | 0.454426 | 4:+20454347 | MsG0480019439.01.T01:CDS |
| CATGAAAGAAAGGGTTCTAA+AGG | 0.457088 | 4:+20454236 | MsG0480019439.01.T01:CDS |
| TGGTAGAAGGTTGGAAGCAG+AGG | 0.457415 | 4:+20454419 | MsG0480019439.01.T01:CDS |
| GTTGATTGACCACAAATTGA+AGG | 0.458305 | 4:+20454392 | MsG0480019439.01.T01:CDS |
| AGAGATCTGGCCGTCACCAC+AGG | 0.458628 | 4:+20454134 | MsG0480019439.01.T01:CDS |
| CTCGTAGGGTCCATAAATTA+TGG | 0.464730 | 4:-20454103 | None:intergenic |
| ATCTCTGGTTGAGGCTCGTA+GGG | 0.464949 | 4:-20454117 | None:intergenic |
| TTGATTCAAAACATCTTTGT+TGG | 0.470119 | 4:+20454370 | MsG0480019439.01.T01:CDS |
| ACGAGCCTCAACCAGAGATC+TGG | 0.471522 | 4:+20454121 | MsG0480019439.01.T01:CDS |
| ATTGAAAGTCAATCTTTCAT+GGG | 0.502132 | 4:+20454561 | MsG0480019439.01.T01:CDS |
| CTAGGATCGACTTCGCCAAA+TGG | 0.512642 | 4:-20454618 | None:intergenic |
| AGTAGATTTGGCAAAACTCT+AGG | 0.518146 | 4:-20454636 | None:intergenic |
| GACCACAAATTGAAGGAGGT+TGG | 0.522187 | 4:+20454399 | MsG0480019439.01.T01:CDS |
| GATCTCTGGTTGAGGCTCGT+AGG | 0.522551 | 4:-20454118 | None:intergenic |
| GACGGCCAGATCTCTGGTTG+AGG | 0.531549 | 4:-20454126 | None:intergenic |
| ATGATGGGTCCTAGCCATGC+TGG | 0.537310 | 4:+20454513 | MsG0480019439.01.T01:CDS |
| TTACTAAATGTAAATGGTGG+TGG | 0.538321 | 4:-20454477 | None:intergenic |
| GCGGAAGGGTCTACTGAAGA+AGG | 0.542122 | 4:+20454041 | MsG0480019439.01.T01:CDS |
| AGAATCATCATCTACGATGA+AGG | 0.548354 | 4:-20453995 | None:intergenic |
| AAATTCAGAACAATGACTGT+GGG | 0.557360 | 4:+20454177 | MsG0480019439.01.T01:CDS |
| AGAAACTTACATGAAAGAAA+GGG | 0.561601 | 4:+20454227 | MsG0480019439.01.T01:CDS |
| AACATACAATAGAAGGCGGA+AGG | 0.566279 | 4:+20454026 | MsG0480019439.01.T01:CDS |
| AATGAAGAAATGGCAATGAT+GGG | 0.575476 | 4:+20454498 | MsG0480019439.01.T01:CDS |
| AAGGCATGATAACAAGGAGA+TGG | 0.575499 | 4:+20454281 | MsG0480019439.01.T01:CDS |
| AAGAGAATCTGAAGATGCAA+AGG | 0.583106 | 4:+20454262 | MsG0480019439.01.T01:CDS |
| GTTTGGACTCCCTGTGGTGA+CGG | 0.587157 | 4:-20454144 | None:intergenic |
| ATAGGCATTCCAGCATGGCT+AGG | 0.588282 | 4:-20454522 | None:intergenic |
| GATGCAAAGGCATGATAACA+AGG | 0.593479 | 4:+20454275 | MsG0480019439.01.T01:CDS |
| TTGGAAGCAGAGGATAATAG+TGG | 0.618049 | 4:+20454429 | MsG0480019439.01.T01:CDS |
| TATTCATAGGCATTCCAGCA+TGG | 0.618391 | 4:-20454527 | None:intergenic |
| GGCTTGATGATGAATAGTAA+TGG | 0.618975 | 4:+20454582 | MsG0480019439.01.T01:CDS |
| AAAATTCAGAACAATGACTG+TGG | 0.623795 | 4:+20454176 | MsG0480019439.01.T01:CDS |
| TCATTACTAAATGTAAATGG+TGG | 0.625978 | 4:-20454480 | None:intergenic |
| GATTGACCACAAATTGAAGG+AGG | 0.630849 | 4:+20454395 | MsG0480019439.01.T01:CDS |
| GAGATCTGGCCGTCACCACA+GGG | 0.642312 | 4:+20454135 | MsG0480019439.01.T01:CDS |
| GAATAGTAATGGAGATGAGT+CGG | 0.650993 | 4:+20454593 | MsG0480019439.01.T01:CDS |
| AGCACTGTTTGGACTCCCTG+TGG | 0.665566 | 4:-20454150 | None:intergenic |
| ATTCAGAACAATGACTGTGG+GGG | 0.672862 | 4:+20454179 | MsG0480019439.01.T01:CDS |
| ACATACAATAGAAGGCGGAA+GGG | 0.677825 | 4:+20454027 | MsG0480019439.01.T01:CDS |
| AATTCAGAACAATGACTGTG+GGG | 0.687730 | 4:+20454178 | MsG0480019439.01.T01:CDS |
| AAGCAACATACAATAGAAGG+CGG | 0.694844 | 4:+20454022 | MsG0480019439.01.T01:CDS |
| TATGAACTAAGCACTCTGTG+TGG | 0.701795 | 4:+20454066 | MsG0480019439.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATTTAGTAATGAAGAAA+TGG | + | Chr4:20454488-20454507 | MsG0480019439.01.T01:CDS | 20.0% |
| !! | TCTTCATTACTAAATGTAAA+TGG | - | Chr4:20454486-20454505 | None:intergenic | 20.0% |
| ! | AAGAAACTTACATGAAAGAA+AGG | + | Chr4:20454226-20454245 | MsG0480019439.01.T01:CDS | 25.0% |
| ! | AGAAACTTACATGAAAGAAA+GGG | + | Chr4:20454227-20454246 | MsG0480019439.01.T01:CDS | 25.0% |
| ! | ATTGAAAGTCAATCTTTCAT+GGG | + | Chr4:20454561-20454580 | MsG0480019439.01.T01:CDS | 25.0% |
| ! | TATGCTGAATAATATGTCAT+TGG | + | Chr4:20454347-20454366 | MsG0480019439.01.T01:CDS | 25.0% |
| ! | TCATTACTAAATGTAAATGG+TGG | - | Chr4:20454483-20454502 | None:intergenic | 25.0% |
| ! | TTGATTCAAAACATCTTTGT+TGG | + | Chr4:20454370-20454389 | MsG0480019439.01.T01:CDS | 25.0% |
| AAAATTCAGAACAATGACTG+TGG | + | Chr4:20454176-20454195 | MsG0480019439.01.T01:CDS | 30.0% | |
| AAATTCAGAACAATGACTGT+GGG | + | Chr4:20454177-20454196 | MsG0480019439.01.T01:CDS | 30.0% | |
| AATGAAGAAATGGCAATGAT+GGG | + | Chr4:20454498-20454517 | MsG0480019439.01.T01:CDS | 30.0% | |
| ATGTTGTTGCCATTATTCAT+AGG | - | Chr4:20454543-20454562 | None:intergenic | 30.0% | |
| CATTGAAAGTCAATCTTTCA+TGG | + | Chr4:20454560-20454579 | MsG0480019439.01.T01:CDS | 30.0% | |
| TAATGAAGAAATGGCAATGA+TGG | + | Chr4:20454497-20454516 | MsG0480019439.01.T01:CDS | 30.0% | |
| TTACTAAATGTAAATGGTGG+TGG | - | Chr4:20454480-20454499 | None:intergenic | 30.0% | |
| AAGAGAATCTGAAGATGCAA+AGG | + | Chr4:20454262-20454281 | MsG0480019439.01.T01:CDS | 35.0% | |
| AAGCAACATACAATAGAAGG+CGG | + | Chr4:20454022-20454041 | MsG0480019439.01.T01:CDS | 35.0% | |
| AATTCAGAACAATGACTGTG+GGG | + | Chr4:20454178-20454197 | MsG0480019439.01.T01:CDS | 35.0% | |
| AGAATCATCATCTACGATGA+AGG | - | Chr4:20453998-20454017 | None:intergenic | 35.0% | |
| AGTAGATTTGGCAAAACTCT+AGG | - | Chr4:20454639-20454658 | None:intergenic | 35.0% | |
| GGAAAGCAACATACAATAGA+AGG | + | Chr4:20454019-20454038 | MsG0480019439.01.T01:CDS | 35.0% | |
| GTTGATTGACCACAAATTGA+AGG | + | Chr4:20454392-20454411 | MsG0480019439.01.T01:CDS | 35.0% | |
| TCATCGTAGATGATGATTCT+AGG | + | Chr4:20453998-20454017 | MsG0480019439.01.T01:CDS | 35.0% | |
| ! | CATGAAAGAAAGGGTTCTAA+AGG | + | Chr4:20454236-20454255 | MsG0480019439.01.T01:CDS | 35.0% |
| ! | CTAGCTTGTGCCATAATTTA+TGG | + | Chr4:20454093-20454112 | MsG0480019439.01.T01:CDS | 35.0% |
| ! | GAATAGTAATGGAGATGAGT+CGG | + | Chr4:20454593-20454612 | MsG0480019439.01.T01:CDS | 35.0% |
| !! | ATGTAAATGGTGGTGGTATT+TGG | - | Chr4:20454473-20454492 | None:intergenic | 35.0% |
| !! | GGCTTGATGATGAATAGTAA+TGG | + | Chr4:20454582-20454601 | MsG0480019439.01.T01:CDS | 35.0% |
| !!! | TGAATTTTGAGAGCACTGTT+TGG | - | Chr4:20454164-20454183 | None:intergenic | 35.0% |
| AACATACAATAGAAGGCGGA+AGG | + | Chr4:20454026-20454045 | MsG0480019439.01.T01:CDS | 40.0% | |
| AAGGCATGATAACAAGGAGA+TGG | + | Chr4:20454281-20454300 | MsG0480019439.01.T01:CDS | 40.0% | |
| ACATACAATAGAAGGCGGAA+GGG | + | Chr4:20454027-20454046 | MsG0480019439.01.T01:CDS | 40.0% | |
| ATTCAGAACAATGACTGTGG+GGG | + | Chr4:20454179-20454198 | MsG0480019439.01.T01:CDS | 40.0% | |
| CTCGTAGGGTCCATAAATTA+TGG | - | Chr4:20454106-20454125 | None:intergenic | 40.0% | |
| GATTGACCACAAATTGAAGG+AGG | + | Chr4:20454395-20454414 | MsG0480019439.01.T01:CDS | 40.0% | |
| GCTGGAATGCCTATGAATAA+TGG | + | Chr4:20454531-20454550 | MsG0480019439.01.T01:CDS | 40.0% | |
| TACCAACCTCCTTCAATTTG+TGG | - | Chr4:20454404-20454423 | None:intergenic | 40.0% | |
| TATGAACTAAGCACTCTGTG+TGG | + | Chr4:20454066-20454085 | MsG0480019439.01.T01:CDS | 40.0% | |
| TATTCATAGGCATTCCAGCA+TGG | - | Chr4:20454530-20454549 | None:intergenic | 40.0% | |
| TTGGAAGCAGAGGATAATAG+TGG | + | Chr4:20454429-20454448 | MsG0480019439.01.T01:CDS | 40.0% | |
| ! | GATGCAAAGGCATGATAACA+AGG | + | Chr4:20454275-20454294 | MsG0480019439.01.T01:CDS | 40.0% |
| !! | AATTGAAGGAGGTTGGTAGA+AGG | + | Chr4:20454406-20454425 | MsG0480019439.01.T01:CDS | 40.0% |
| GACCACAAATTGAAGGAGGT+TGG | + | Chr4:20454399-20454418 | MsG0480019439.01.T01:CDS | 45.0% | |
| ATAGGCATTCCAGCATGGCT+AGG | - | Chr4:20454525-20454544 | None:intergenic | 50.0% | |
| ATCTCTGGTTGAGGCTCGTA+GGG | - | Chr4:20454120-20454139 | None:intergenic | 50.0% | |
| GGGGGAGAAGAGCAACAAAA+CGG | + | Chr4:20454197-20454216 | MsG0480019439.01.T01:CDS | 50.0% | |
| TGGTAGAAGGTTGGAAGCAG+AGG | + | Chr4:20454419-20454438 | MsG0480019439.01.T01:CDS | 50.0% | |
| ! | CTAGGATCGACTTCGCCAAA+TGG | - | Chr4:20454621-20454640 | None:intergenic | 50.0% |
| !! | GAAGGAGGTTGGTAGAAGGT+TGG | + | Chr4:20454410-20454429 | MsG0480019439.01.T01:CDS | 50.0% |
| ACGAGCCTCAACCAGAGATC+TGG | + | Chr4:20454121-20454140 | MsG0480019439.01.T01:CDS | 55.0% | |
| AGCACTGTTTGGACTCCCTG+TGG | - | Chr4:20454153-20454172 | None:intergenic | 55.0% | |
| GATCTCTGGTTGAGGCTCGT+AGG | - | Chr4:20454121-20454140 | None:intergenic | 55.0% | |
| GCGGAAGGGTCTACTGAAGA+AGG | + | Chr4:20454041-20454060 | MsG0480019439.01.T01:CDS | 55.0% | |
| GTTTGGACTCCCTGTGGTGA+CGG | - | Chr4:20454147-20454166 | None:intergenic | 55.0% | |
| !! | ATGATGGGTCCTAGCCATGC+TGG | + | Chr4:20454513-20454532 | MsG0480019439.01.T01:CDS | 55.0% |
| !! | GGAGATGAGTCGGTGCCATT+TGG | + | Chr4:20454603-20454622 | MsG0480019439.01.T01:CDS | 55.0% |
| AGAGATCTGGCCGTCACCAC+AGG | + | Chr4:20454134-20454153 | MsG0480019439.01.T01:CDS | 60.0% | |
| GACGGCCAGATCTCTGGTTG+AGG | - | Chr4:20454129-20454148 | None:intergenic | 60.0% | |
| GAGATCTGGCCGTCACCACA+GGG | + | Chr4:20454135-20454154 | MsG0480019439.01.T01:CDS | 60.0% | |
| !! | TGTGGTGACGGCCAGATCTC+TGG | - | Chr4:20454135-20454154 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 20453970 | 20454665 | 20453970 | ID=MsG0480019439.01;Name=MsG0480019439.01 |
| Chr4 | mRNA | 20453970 | 20454665 | 20453970 | ID=MsG0480019439.01.T01;Parent=MsG0480019439.01;Name=MsG0480019439.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|231 |
| Chr4 | exon | 20453970 | 20454665 | 20453970 | ID=MsG0480019439.01.T01:exon:9891;Parent=MsG0480019439.01.T01 |
| Chr4 | CDS | 20453970 | 20454665 | 20453970 | ID=MsG0480019439.01.T01:cds;Parent=MsG0480019439.01.T01 |
| Gene Sequence |
| Protein sequence |
