AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019717.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019717.01.T01 MTR_7g028448 89.595 173 14 1 1 173 1 169 7.49e-104 295
MsG0480019717.01.T01 MTR_4g036915 89.595 173 14 1 1 173 1 169 7.49e-104 295
MsG0480019717.01.T01 MTR_2g105290 70.186 161 44 1 1 157 1 161 1.12e-78 232
MsG0480019717.01.T01 MTR_8g086290 67.081 161 49 1 1 157 1 161 9.63e-77 227
MsG0480019717.01.T01 MTR_4g127140 64.912 171 46 2 1 157 1 171 3.13e-67 203
MsG0480019717.01.T01 MTR_3g080940 41.975 162 86 2 6 159 3 164 2.30e-38 130
MsG0480019717.01.T01 MTR_1g105910 44.304 158 74 3 8 154 5 159 4.24e-38 130
MsG0480019717.01.T01 MTR_2g030740 44.937 158 73 3 8 154 5 159 5.80e-38 130
MsG0480019717.01.T01 MTR_8g043650 43.671 158 75 3 8 154 5 159 5.46e-37 128
MsG0480019717.01.T01 MTR_1g012570 43.038 158 76 3 8 154 5 159 7.22e-37 127
MsG0480019717.01.T01 MTR_3g052920 42.945 163 79 3 8 159 5 164 9.34e-37 127
MsG0480019717.01.T01 MTR_1g105920 43.038 158 76 3 8 154 5 159 2.29e-36 126
MsG0480019717.01.T01 MTR_1g106070 43.038 158 76 3 8 154 5 159 3.76e-36 124
MsG0480019717.01.T01 MTR_1g108510 41.954 174 85 4 8 169 5 174 8.69e-34 119
MsG0480019717.01.T01 MTR_1g108580 41.040 173 88 3 8 169 5 174 9.47e-34 119
MsG0480019717.01.T01 MTR_2g093190 41.618 173 87 3 8 169 5 174 1.28e-33 119
MsG0480019717.01.T01 MTR_5g053390 41.935 155 82 3 8 154 5 159 1.56e-33 119
MsG0480019717.01.T01 MTR_3g030770 41.618 173 87 3 8 169 5 174 2.44e-33 118
MsG0480019717.01.T01 MTR_5g045560 37.975 158 84 3 8 154 5 159 4.59e-32 115
MsG0480019717.01.T01 MTR_3g052870 43.537 147 68 4 8 147 5 143 1.22e-31 113
MsG0480019717.01.T01 MTR_2g085250 37.736 159 83 3 8 154 5 159 3.02e-30 110
MsG0480019717.01.T01 MTR_2g085280 37.736 159 83 3 8 154 5 159 3.08e-30 110
MsG0480019717.01.T01 MTR_1g075600 38.125 160 91 2 8 159 5 164 5.50e-30 110
MsG0480019717.01.T01 MTR_1g077360 39.130 161 84 3 8 157 5 162 6.91e-29 107
MsG0480019717.01.T01 MTR_1g105905 41.429 140 68 3 25 153 5 141 1.31e-28 105
MsG0480019717.01.T01 MTR_5g055100 37.419 155 87 3 8 153 5 158 1.83e-28 105
MsG0480019717.01.T01 MTR_8g022970 36.970 165 93 3 4 161 14 174 1.78e-27 102
MsG0480019717.01.T01 MTR_0121s0080 40.491 163 83 3 8 159 5 164 2.10e-27 103
MsG0480019717.01.T01 MTR_0121s0100 44.094 127 61 2 8 127 5 128 7.00e-27 99.0
MsG0480019717.01.T01 MTR_1g047550 49.425 87 42 1 11 97 1 85 5.37e-26 98.2
MsG0480019717.01.T01 MTR_8g079502 42.342 111 62 1 11 119 1 111 1.80e-25 96.7
MsG0480019717.01.T01 MTR_4g131030 36.875 160 80 5 11 153 1 156 2.77e-25 97.1
MsG0480019717.01.T01 MTR_8g046350 39.200 125 65 2 11 135 1 114 3.10e-25 95.5
MsG0480019717.01.T01 MTR_4g094632 35.928 167 93 5 11 172 1 158 5.86e-25 94.7
MsG0480019717.01.T01 MTR_8g051580 42.453 106 55 2 11 112 1 104 9.88e-25 94.7
MsG0480019717.01.T01 MTR_3g109930 36.486 148 88 2 20 161 10 157 2.83e-24 93.6
MsG0480019717.01.T01 MTR_3g030780 44.628 121 56 2 8 121 5 121 5.71e-24 91.7
MsG0480019717.01.T01 MTR_4g094638 35.099 151 89 2 11 158 1 145 6.30e-23 90.1
MsG0480019717.01.T01 MTR_1g054265 41.121 107 57 2 11 113 1 105 1.22e-22 89.0
MsG0480019717.01.T01 MTR_1g063160 37.748 151 76 5 11 154 1 140 3.52e-22 88.2
MsG0480019717.01.T01 MTR_3g067875 67.308 52 17 0 25 76 5 56 2.21e-21 82.8
MsG0480019717.01.T01 MTR_7g062350 39.583 144 71 4 28 159 37 176 8.30e-21 86.3
MsG0480019717.01.T01 MTR_3g452380 34.559 136 80 3 8 143 13 139 2.16e-20 85.1
MsG0480019717.01.T01 MTR_3g067870 53.030 66 31 0 19 84 83 148 4.55e-20 82.0
MsG0480019717.01.T01 MTR_5g066180 52.174 69 33 0 11 79 1 69 2.12e-19 82.0
MsG0480019717.01.T01 MTR_3g005530 34.783 138 77 4 11 146 1 127 5.36e-19 80.9
MsG0480019717.01.T01 MTR_8g087860 34.507 142 80 4 4 143 10 140 6.50e-19 81.3
MsG0480019717.01.T01 MTR_0003s0590 50.000 82 40 1 11 92 1 81 7.44e-19 81.3
MsG0480019717.01.T01 MTR_2g017865 34.965 143 80 5 3 143 8 139 1.44e-18 80.5
MsG0480019717.01.T01 MTR_1g053070 53.521 71 33 0 11 81 1 71 1.49e-18 80.1
MsG0480019717.01.T01 MTR_4g093970 56.250 64 28 0 13 76 29 92 2.05e-18 79.7
MsG0480019717.01.T01 MTR_3g102570 55.556 72 31 1 11 81 1 72 2.45e-18 80.9
MsG0480019717.01.T01 MTR_3g437790 33.333 138 83 2 29 157 30 167 4.95e-18 77.4
MsG0480019717.01.T01 MTR_3g067910 56.897 58 25 0 25 82 3 60 6.38e-18 75.1
MsG0480019717.01.T01 MTR_3g113030 38.971 136 65 5 11 143 1 121 6.52e-18 78.2
MsG0480019717.01.T01 MTR_6g464720 43.137 102 54 2 11 111 1 99 1.30e-17 77.8
MsG0480019717.01.T01 MTR_4g109810 31.210 157 92 5 11 162 1 146 1.70e-17 77.4
MsG0480019717.01.T01 MTR_5g046790 32.484 157 90 5 11 161 1 147 1.72e-17 76.6
MsG0480019717.01.T01 MTR_8g066260 34.161 161 82 5 11 161 1 147 2.85e-17 76.6
MsG0480019717.01.T01 MTR_5g031000 46.377 69 37 0 11 79 1 69 3.13e-17 76.3
MsG0480019717.01.T01 MTR_5g031000 46.377 69 37 0 11 79 1 69 3.25e-17 76.6
MsG0480019717.01.T01 MTR_5g066960 53.448 58 27 0 11 68 1 58 3.80e-17 72.0
MsG0480019717.01.T01 MTR_8g033220 37.333 150 79 6 15 157 5 146 4.62e-17 75.9
MsG0480019717.01.T01 MTR_4g084740 51.389 72 34 1 11 81 1 72 4.97e-17 77.4
MsG0480019717.01.T01 MTR_1g108500 68.000 50 16 0 25 74 110 159 4.97e-17 77.4
MsG0480019717.01.T01 MTR_8g033220 37.333 150 79 6 15 157 5 146 5.09e-17 75.9
MsG0480019717.01.T01 MTR_2g009890 46.377 69 37 0 11 79 1 69 5.28e-17 76.6
MsG0480019717.01.T01 MTR_5g032150 50.725 69 34 0 11 79 1 69 5.36e-17 75.9
MsG0480019717.01.T01 MTR_5g032520 50.725 69 34 0 11 79 1 69 5.50e-17 75.5
MsG0480019717.01.T01 MTR_5g021270 36.232 138 76 3 11 146 1 128 6.05e-17 75.5
MsG0480019717.01.T01 MTR_5g021270 36.232 138 76 3 11 146 1 128 6.34e-17 75.5
MsG0480019717.01.T01 MTR_5g046870 52.239 67 30 1 11 75 1 67 6.36e-17 72.8
MsG0480019717.01.T01 MTR_7g075870 34.307 137 71 3 15 146 5 127 6.98e-17 75.1
MsG0480019717.01.T01 MTR_1g029670 49.231 65 33 0 11 75 1 65 7.32e-17 74.3
MsG0480019717.01.T01 MTR_8g033270 49.275 69 35 0 11 79 1 69 8.66e-17 75.5
MsG0480019717.01.T01 MTR_4g109830 33.333 156 90 5 11 161 1 147 8.74e-17 75.1
MsG0480019717.01.T01 MTR_4g102530 42.056 107 60 2 15 119 5 111 8.89e-17 74.7
MsG0480019717.01.T01 MTR_3g088615 49.231 65 33 0 11 75 1 65 1.01e-16 73.9
MsG0480019717.01.T01 MTR_7g016630 31.410 156 91 5 11 161 1 145 3.90e-16 73.9
MsG0480019717.01.T01 MTR_7g075870 60.377 53 21 0 15 67 5 57 4.88e-16 72.8
MsG0480019717.01.T01 MTR_1g101970 31.250 160 102 4 11 170 1 152 1.01e-15 71.6
MsG0480019717.01.T01 MTR_2g461710 56.364 55 24 0 11 65 1 55 1.26e-15 67.8
MsG0480019717.01.T01 MTR_7g016600 54.386 57 26 0 11 67 1 57 2.40e-15 71.6
MsG0480019717.01.T01 MTR_1g038300 46.479 71 36 1 11 79 1 71 4.25e-15 70.9
MsG0480019717.01.T01 MTR_3g084980 56.140 57 25 0 11 67 1 57 4.56e-15 70.9
MsG0480019717.01.T01 MTR_8g097090 54.386 57 26 0 11 67 1 57 5.08e-15 70.5
MsG0480019717.01.T01 MTR_6g015975 48.571 70 35 1 11 79 1 70 5.46e-15 70.9
MsG0480019717.01.T01 MTR_7g075850 56.604 53 23 0 11 63 1 53 7.26e-15 70.5
MsG0480019717.01.T01 MTR_4g093030 52.727 55 26 0 11 65 1 55 3.46e-14 67.0
MsG0480019717.01.T01 MTR_2g045020 32.927 164 88 6 3 157 18 168 9.47e-14 66.2
MsG0480019717.01.T01 MTR_1g075570 35.593 118 62 2 25 138 5 112 1.08e-13 65.5
MsG0480019717.01.T01 MTR_4g051538 43.333 60 34 0 29 88 26 85 1.71e-13 66.2
MsG0480019717.01.T01 MTR_4g108720 50.000 54 27 0 11 64 1 54 2.31e-13 67.0
MsG0480019717.01.T01 MTR_4g036050 28.767 146 98 3 15 157 5 147 5.56e-13 64.3
MsG0480019717.01.T01 MTR_4g036050 28.767 146 98 3 15 157 5 147 7.75e-13 63.9
MsG0480019717.01.T01 MTR_1g041615 34.234 111 64 2 26 136 20 121 1.15e-12 62.4
MsG0480019717.01.T01 MTR_4g036050 50.980 51 25 0 15 65 5 55 1.20e-12 63.2
MsG0480019717.01.T01 MTR_4g036050 50.980 51 25 0 15 65 5 55 1.30e-12 63.2
MsG0480019717.01.T01 MTR_5g041650 37.662 77 46 2 11 85 38 114 1.75e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019717.01.T01 AT5G60440 40.373 161 79 3 8 154 3 160 2.62e-34 122
MsG0480019717.01.T01 AT2G24840 38.854 157 87 2 10 157 61 217 4.27e-34 121
MsG0480019717.01.T01 AT1G65360 38.125 160 90 3 8 159 3 161 1.20e-26 100
MsG0480019717.01.T01 AT1G01530 34.356 163 92 3 8 159 3 161 3.90e-25 97.8
MsG0480019717.01.T01 AT2G34440 37.762 143 81 4 11 146 1 142 2.15e-24 94.0
MsG0480019717.01.T01 AT4G36590 35.366 164 92 3 12 161 7 170 9.99e-24 94.0
MsG0480019717.01.T01 AT4G09960 38.406 138 72 5 11 146 1 127 6.52e-23 91.3
MsG0480019717.01.T01 AT3G04100 35.326 184 90 7 6 171 8 180 6.58e-23 90.9
MsG0480019717.01.T01 AT3G66656 48.454 97 49 1 11 107 1 96 6.60e-23 90.1
MsG0480019717.01.T01 AT4G09960 38.406 138 72 5 11 146 2 128 7.24e-23 91.3
MsG0480019717.01.T01 AT4G09960 38.406 138 72 5 11 146 1 127 7.65e-23 91.3
MsG0480019717.01.T01 AT4G09960 38.406 138 72 5 11 146 11 137 1.05e-22 91.3
MsG0480019717.01.T01 AT4G09960 38.406 138 72 5 11 146 27 153 1.66e-22 90.9
MsG0480019717.01.T01 AT4G09960 38.406 138 72 5 11 146 96 222 1.97e-21 89.4
MsG0480019717.01.T01 AT4G22950 39.098 133 69 2 15 146 5 126 3.57e-21 85.5
MsG0480019717.01.T01 AT2G45660 37.879 132 73 2 15 146 5 127 4.96e-21 84.7
MsG0480019717.01.T01 AT2G42830 36.429 140 76 4 9 146 14 142 6.46e-21 86.7
MsG0480019717.01.T01 AT2G42830 36.429 140 76 4 9 146 14 142 6.62e-21 86.7
MsG0480019717.01.T01 AT5G10140 44.538 119 57 4 11 126 1 113 1.11e-20 84.0
MsG0480019717.01.T01 AT1G28460 37.037 162 89 4 8 157 4 164 1.34e-20 84.3
MsG0480019717.01.T01 AT4G22950 39.098 133 69 2 15 146 5 126 1.48e-20 85.1
MsG0480019717.01.T01 AT4G22950 39.098 133 69 2 15 146 5 126 1.48e-20 85.1
MsG0480019717.01.T01 AT2G45660 37.879 132 73 2 15 146 5 127 1.54e-20 84.7
MsG0480019717.01.T01 AT5G10140 44.538 119 57 4 11 126 1 113 2.61e-20 83.6
MsG0480019717.01.T01 AT5G10140 44.538 119 57 4 11 126 1 113 2.83e-20 83.6
MsG0480019717.01.T01 AT5G10140 44.538 119 57 4 11 126 1 113 3.67e-20 83.6
MsG0480019717.01.T01 AT1G29962 35.928 167 91 5 6 157 2 167 3.74e-20 83.2
MsG0480019717.01.T01 AT1G72350 33.562 146 72 3 12 157 43 163 4.85e-20 83.6
MsG0480019717.01.T01 AT5G51870 35.915 142 77 2 8 146 21 151 5.48e-20 82.8
MsG0480019717.01.T01 AT1G77950 36.310 168 91 6 11 167 1 163 8.87e-20 83.6
MsG0480019717.01.T01 AT1G77950 36.310 168 91 6 11 167 1 163 8.87e-20 83.6
MsG0480019717.01.T01 AT1G77950 36.310 168 91 6 11 167 1 163 8.87e-20 83.6
MsG0480019717.01.T01 AT1G77950 36.310 168 91 6 11 167 1 163 8.87e-20 83.6
MsG0480019717.01.T01 AT5G51870 37.037 135 71 2 15 146 5 128 8.91e-20 82.0
MsG0480019717.01.T01 AT5G51870 37.037 135 71 2 15 146 5 128 1.70e-19 82.0
MsG0480019717.01.T01 AT1G28450 33.721 172 98 4 8 164 4 174 1.83e-19 81.3
MsG0480019717.01.T01 AT5G51870 34.899 149 83 2 1 146 1 138 2.24e-19 82.0
MsG0480019717.01.T01 AT4G24540 55.072 69 31 0 11 79 1 69 2.60e-19 81.6
MsG0480019717.01.T01 AT5G51870 37.037 135 71 2 15 146 5 128 3.02e-19 81.6
MsG0480019717.01.T01 AT5G13790 56.338 71 31 0 11 81 1 71 4.51e-19 82.0
MsG0480019717.01.T01 AT3G58780 35.211 142 79 4 4 143 15 145 4.55e-19 81.6
MsG0480019717.01.T01 AT5G51860 36.957 138 75 4 15 150 5 132 4.86e-19 80.5
MsG0480019717.01.T01 AT5G13790 56.338 71 31 0 11 81 1 71 5.00e-19 82.0
MsG0480019717.01.T01 AT3G58780 35.211 142 79 4 4 143 9 139 5.15e-19 81.6
MsG0480019717.01.T01 AT2G22540 53.623 69 32 0 11 79 1 69 5.23e-19 81.3
MsG0480019717.01.T01 AT2G22540 53.623 69 32 0 11 79 1 69 5.23e-19 81.3
MsG0480019717.01.T01 AT5G51860 36.957 138 75 4 15 150 5 132 6.29e-19 80.5
MsG0480019717.01.T01 AT3G58780 34.483 145 82 4 4 146 9 142 6.49e-19 81.6
MsG0480019717.01.T01 AT3G57390 37.241 145 66 4 11 155 1 120 6.63e-19 80.9
MsG0480019717.01.T01 AT1G77980 52.778 72 33 1 11 81 1 72 9.32e-19 82.0
MsG0480019717.01.T01 AT5G23260 47.436 78 39 1 6 81 12 89 1.11e-18 80.9
MsG0480019717.01.T01 AT4G18960 35.821 134 73 4 12 143 18 140 1.13e-18 80.5
MsG0480019717.01.T01 AT5G23260 47.436 78 39 1 6 81 12 89 1.15e-18 80.9
MsG0480019717.01.T01 AT3G57390 37.241 145 66 4 11 155 1 120 1.53e-18 80.5
MsG0480019717.01.T01 AT2G22540 63.636 55 20 0 11 65 1 55 2.03e-18 79.7
MsG0480019717.01.T01 AT5G60910 35.032 157 88 5 11 162 1 148 2.09e-18 79.7
MsG0480019717.01.T01 AT1G22130 51.389 72 34 1 11 81 1 72 4.22e-18 80.1
MsG0480019717.01.T01 AT3G30260 31.210 157 94 4 11 162 1 148 4.49e-18 79.0
MsG0480019717.01.T01 AT3G57230 44.928 69 38 0 11 79 1 69 5.16e-18 76.6
MsG0480019717.01.T01 AT3G54340 35.556 135 69 4 15 146 5 124 5.25e-18 78.6
MsG0480019717.01.T01 AT4G37940 46.377 69 37 0 11 79 1 69 6.11e-18 78.2
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 6.49e-18 76.6
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 6.49e-18 76.6
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 6.49e-18 76.6
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 6.49e-18 76.6
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 6.49e-18 76.6
MsG0480019717.01.T01 AT4G37940 46.377 69 37 0 11 79 1 69 6.76e-18 77.8
MsG0480019717.01.T01 AT4G37940 46.377 69 37 0 11 79 1 69 7.07e-18 77.0
MsG0480019717.01.T01 AT3G58780 37.324 142 69 5 4 143 9 132 7.40e-18 78.2
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 9.28e-18 76.3
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 9.28e-18 76.3
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 9.28e-18 76.3
MsG0480019717.01.T01 AT2G22630 39.583 96 56 1 11 106 1 94 1.50e-17 77.4
MsG0480019717.01.T01 AT2G22630 39.583 96 56 1 11 106 1 94 1.50e-17 77.4
MsG0480019717.01.T01 AT2G45650 50.725 69 34 0 11 79 1 69 1.92e-17 77.4
MsG0480019717.01.T01 AT5G62165 46.667 75 40 0 15 89 5 79 1.96e-17 73.9
MsG0480019717.01.T01 AT5G23260 49.315 73 35 1 11 81 1 73 2.15e-17 77.4
MsG0480019717.01.T01 AT5G23260 49.315 73 35 1 11 81 1 73 2.96e-17 76.6
MsG0480019717.01.T01 AT3G57230 44.928 69 38 0 11 79 1 69 3.31e-17 76.6
MsG0480019717.01.T01 AT3G57230 44.928 69 38 0 11 79 1 69 3.31e-17 76.6
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 3.41e-17 75.5
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 3.41e-17 75.5
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 4.18e-17 75.9
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 4.18e-17 75.9
MsG0480019717.01.T01 AT5G62165 36.232 138 67 4 15 146 5 127 4.18e-17 75.9
MsG0480019717.01.T01 AT4G11880 36.774 155 68 6 15 162 5 136 4.25e-17 75.1
MsG0480019717.01.T01 AT4G11880 36.774 155 68 6 15 162 5 136 4.25e-17 75.1
MsG0480019717.01.T01 AT4G11880 37.410 139 64 4 15 146 5 127 6.77e-17 75.5
MsG0480019717.01.T01 AT4G11880 37.410 139 64 4 15 146 5 127 6.77e-17 75.5
MsG0480019717.01.T01 AT3G58780 53.846 65 30 0 4 68 9 73 8.59e-17 75.9
MsG0480019717.01.T01 AT2G03710 29.747 158 95 4 11 162 1 148 2.68e-16 73.2
MsG0480019717.01.T01 AT5G20240 49.296 71 34 1 11 79 1 71 3.93e-16 71.6
MsG0480019717.01.T01 AT2G14210 47.143 70 36 1 11 79 1 70 4.84e-16 73.2
MsG0480019717.01.T01 AT5G20240 49.296 71 34 1 11 79 1 71 4.85e-16 72.8
MsG0480019717.01.T01 AT1G69120 32.919 161 84 6 11 161 1 147 5.21e-16 73.2
MsG0480019717.01.T01 AT1G26310 31.410 156 95 5 11 161 1 149 6.15e-16 73.6
MsG0480019717.01.T01 AT2G14210 47.143 70 36 1 11 79 1 70 6.77e-16 72.8
MsG0480019717.01.T01 AT1G69120 32.919 161 84 6 11 161 1 147 8.04e-16 73.2
MsG0480019717.01.T01 AT1G47760 48.333 60 31 0 11 70 1 60 1.29e-15 71.2
MsG0480019717.01.T01 AT1G24260 31.928 166 92 4 11 170 1 151 2.74e-15 71.6
MsG0480019717.01.T01 AT2G03710 29.747 158 95 4 11 162 1 148 3.41e-15 71.2
MsG0480019717.01.T01 AT2G03710 29.747 158 95 4 11 162 1 148 3.44e-15 71.2
MsG0480019717.01.T01 AT5G65070 39.759 83 47 2 11 92 1 81 4.18e-15 68.9
MsG0480019717.01.T01 AT1G24260 54.386 57 26 0 11 67 1 57 4.67e-15 70.9
MsG0480019717.01.T01 AT5G15800 54.386 57 26 0 11 67 1 57 4.76e-15 70.9
MsG0480019717.01.T01 AT3G02310 54.386 57 26 0 11 67 1 57 5.04e-15 70.1
MsG0480019717.01.T01 AT5G65050 34.266 143 78 5 11 150 1 130 5.19e-15 69.3
MsG0480019717.01.T01 AT1G24260 54.386 57 26 0 11 67 1 57 5.29e-15 70.5
MsG0480019717.01.T01 AT3G61120 44.928 69 38 0 11 79 1 69 8.14e-15 70.1
MsG0480019717.01.T01 AT5G65050 34.965 143 77 6 11 150 1 130 8.51e-15 68.9
MsG0480019717.01.T01 AT5G15800 54.386 57 26 0 11 67 1 57 9.69e-15 70.1
MsG0480019717.01.T01 AT5G65050 44.304 79 42 2 11 87 1 79 1.06e-14 68.9
MsG0480019717.01.T01 AT5G65070 39.759 83 47 2 11 92 1 81 1.10e-14 68.9
MsG0480019717.01.T01 AT5G65050 44.304 79 42 2 11 87 1 79 1.18e-14 68.9
MsG0480019717.01.T01 AT1G71692 54.545 55 25 0 11 65 1 55 1.58e-14 68.9
MsG0480019717.01.T01 AT3G02310 54.386 57 26 0 11 67 1 57 1.72e-14 69.3
MsG0480019717.01.T01 AT5G65070 39.759 83 47 2 11 92 1 81 2.85e-14 68.6
MsG0480019717.01.T01 AT5G65060 34.459 148 86 5 11 157 1 138 2.96e-14 67.8
MsG0480019717.01.T01 AT5G65060 44.286 70 38 1 11 79 1 70 3.57e-14 67.8
MsG0480019717.01.T01 AT5G65060 44.286 70 38 1 11 79 1 70 3.64e-14 67.4
MsG0480019717.01.T01 AT5G65070 39.759 83 47 2 11 92 1 81 4.56e-14 67.8
MsG0480019717.01.T01 AT2G26320 40.541 74 42 1 8 79 14 87 8.31e-14 64.7
MsG0480019717.01.T01 AT5G65070 44.828 58 32 0 11 68 1 58 1.10e-13 67.0
MsG0480019717.01.T01 AT4G37435 50.877 57 28 0 11 67 1 57 2.73e-13 65.1
MsG0480019717.01.T01 AT5G65080 34.821 112 64 3 6 108 3 114 1.22e-12 63.5
MsG0480019717.01.T01 AT1G18750 43.860 57 32 0 11 67 1 57 2.52e-12 64.3
MsG0480019717.01.T01 AT1G18750 43.860 57 32 0 11 67 1 57 3.06e-12 63.9
MsG0480019717.01.T01 AT1G18750 43.860 57 32 0 11 67 1 57 3.25e-12 63.9
MsG0480019717.01.T01 AT5G65080 41.667 60 35 0 6 65 3 62 4.59e-12 62.0
MsG0480019717.01.T01 AT1G31140 44.776 67 35 1 18 82 8 74 4.82e-12 62.0
MsG0480019717.01.T01 AT1G31140 44.776 67 35 1 18 82 8 74 4.95e-12 62.0
MsG0480019717.01.T01 AT1G17310 29.496 139 70 3 25 163 61 171 9.07e-12 61.6
MsG0480019717.01.T01 AT1G17310 29.496 139 70 3 25 163 72 182 1.19e-11 61.2
MsG0480019717.01.T01 AT5G38620 28.000 150 85 4 14 157 7 139 1.87e-11 61.6
MsG0480019717.01.T01 AT1G46408 36.975 119 60 5 14 118 6 123 2.78e-11 60.8
MsG0480019717.01.T01 AT1G69540 45.000 60 32 1 11 69 1 60 2.91e-11 61.2
MsG0480019717.01.T01 AT2G03060 44.068 59 32 1 11 68 1 59 3.08e-11 61.2
MsG0480019717.01.T01 AT2G03060 44.068 59 32 1 11 68 1 59 3.08e-11 61.2
MsG0480019717.01.T01 AT2G03060 44.068 59 32 1 11 68 1 59 3.08e-11 61.2
MsG0480019717.01.T01 AT2G03060 44.068 59 32 1 11 68 1 59 3.38e-11 61.2
MsG0480019717.01.T01 AT1G69540 38.571 70 42 1 11 79 1 70 4.01e-11 60.8
MsG0480019717.01.T01 AT5G49420 26.036 169 91 5 8 163 3 150 5.01e-11 60.5
MsG0480019717.01.T01 AT5G49490 35.897 78 46 1 8 81 41 118 5.16e-11 60.1

Find 33 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAGCTTGAACAATTTA+TGG 0.133052 4:-25711573 MsG0480019717.01.T01:CDS
TCCAAATTTCACCATGAATA+TGG 0.273438 4:-25712005 None:intergenic
TTGTCTATTGTACTCTTCAT+AGG 0.291632 4:+25711703 None:intergenic
TTGATCAACCAATGCTTTGC+AGG 0.316785 4:-25711523 MsG0480019717.01.T01:CDS
TTTGAGGATTCGAAGTCATT+AGG 0.351077 4:-25711737 MsG0480019717.01.T01:CDS
AAAATTTGAACAAAGGTGAT+TGG 0.388270 4:-25711625 MsG0480019717.01.T01:CDS
TTAGGTTGACCAAAGCAAAA+TGG 0.397509 4:+25711803 None:intergenic
GACCATGGAATTTCTTGATC+TGG 0.399840 4:-25711501 MsG0480019717.01.T01:CDS
TTAAGAATTGTCTCGGCGTT+AGG 0.405011 4:+25711785 None:intergenic
CAACGAAACCACCGAGTTTG+AGG 0.421716 4:-25711753 MsG0480019717.01.T01:CDS
AGCAAAATGGTTTGTCTGAA+GGG 0.440533 4:+25711816 None:intergenic
GGCATTGAAAATGTTGGAGT+TGG 0.446270 4:-25711672 MsG0480019717.01.T01:CDS
TTCAATACTCATATCATCAA+TGG 0.447418 4:+25711592 None:intergenic
TGAGAATGTGACTTGTCTGT+TGG 0.451459 4:+25711919 None:intergenic
TGCAAAGCATTGGTTGATCA+AGG 0.475819 4:+25711525 None:intergenic
TGAGGAGGCATTGAAAATGT+TGG 0.485382 4:-25711678 MsG0480019717.01.T01:CDS
ATTTGAACAAAGGTGATTGG+TGG 0.502919 4:-25711622 MsG0480019717.01.T01:CDS
TCCATGGTCCTGCAAAGCAT+TGG 0.514205 4:+25711515 None:intergenic
AGAGTACAATAGACAATATG+AGG 0.525883 4:-25711696 MsG0480019717.01.T01:CDS
AAGCAAAATGGTTTGTCTGA+AGG 0.532266 4:+25711815 None:intergenic
AACAAAAGAAAGAAAAGTGT+AGG 0.550757 4:-25711980 MsG0480019717.01.T01:CDS
ACCAATGCTTTGCAGGACCA+TGG 0.560385 4:-25711516 MsG0480019717.01.T01:CDS
GTAGCTATTAAGAATTGTCT+CGG 0.570359 4:+25711778 None:intergenic
ATCCAGATCAAGAAATTCCA+TGG 0.575084 4:+25711499 None:intergenic
ACAAAAGAAAGAAAAGTGTA+GGG 0.587235 4:-25711979 MsG0480019717.01.T01:CDS
GCAAAATGGTTTGTCTGAAG+GGG 0.601885 4:+25711817 None:intergenic
ATGTGATGCACATGTAGCCA+TGG 0.634027 4:-25711849 MsG0480019717.01.T01:CDS
ACATTCTCAAAGAGAAGACA+AGG 0.657201 4:-25711905 MsG0480019717.01.T01:CDS
TGACTTCGAATCCTCAAACT+CGG 0.658925 4:+25711742 None:intergenic
CTTCGAATCCTCAAACTCGG+TGG 0.678330 4:+25711745 None:intergenic
GTACAATAGACAATATGAGG+AGG 0.689576 4:-25711693 MsG0480019717.01.T01:CDS
TGATGCACATGTAGCCATGG+TGG 0.726525 4:-25711846 MsG0480019717.01.T01:CDS
TGAAGGGGAAAACACCACCA+TGG 0.731380 4:+25711832 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTCAAATTTTTAACAT+CGG + Chr4:25711854-25711873 None:intergenic 15.0%
!! GATGTTAAAAATTTGAACAA+AGG - Chr4:25711853-25711872 MsG0480019717.01.T01:CDS 20.0%
! AAAATTTGAACAAAGGTGAT+TGG - Chr4:25711860-25711879 MsG0480019717.01.T01:CDS 25.0%
! TTCAATACTCATATCATCAA+TGG + Chr4:25711896-25711915 None:intergenic 25.0%
!! AACAAAAGAAAGAAAAGTGT+AGG - Chr4:25711505-25711524 MsG0480019717.01.T01:CDS 25.0%
!! ACAAAAGAAAGAAAAGTGTA+GGG - Chr4:25711506-25711525 MsG0480019717.01.T01:CDS 25.0%
AGAGTACAATAGACAATATG+AGG - Chr4:25711789-25711808 MsG0480019717.01.T01:CDS 30.0%
GTAGCTATTAAGAATTGTCT+CGG + Chr4:25711710-25711729 None:intergenic 30.0%
TGAAGAGCTTGAACAATTTA+TGG - Chr4:25711912-25711931 MsG0480019717.01.T01:CDS 30.0%
TTGTCTATTGTACTCTTCAT+AGG + Chr4:25711785-25711804 None:intergenic 30.0%
ACATTCTCAAAGAGAAGACA+AGG - Chr4:25711580-25711599 MsG0480019717.01.T01:CDS 35.0%
ATCCAGATCAAGAAATTCCA+TGG + Chr4:25711989-25712008 None:intergenic 35.0%
ATTTGAACAAAGGTGATTGG+TGG - Chr4:25711863-25711882 MsG0480019717.01.T01:CDS 35.0%
GTACAATAGACAATATGAGG+AGG - Chr4:25711792-25711811 MsG0480019717.01.T01:CDS 35.0%
TTTGAGGATTCGAAGTCATT+AGG - Chr4:25711748-25711767 MsG0480019717.01.T01:CDS 35.0%
! AAGCAAAATGGTTTGTCTGA+AGG + Chr4:25711673-25711692 None:intergenic 35.0%
! AGCAAAATGGTTTGTCTGAA+GGG + Chr4:25711672-25711691 None:intergenic 35.0%
! TCAGACAAACCATTTTGCTT+TGG - Chr4:25711673-25711692 MsG0480019717.01.T01:CDS 35.0%
!! TTAGGTTGACCAAAGCAAAA+TGG + Chr4:25711685-25711704 None:intergenic 35.0%
GACCATGGAATTTCTTGATC+TGG - Chr4:25711984-25712003 MsG0480019717.01.T01:CDS 40.0%
TGACTTCGAATCCTCAAACT+CGG + Chr4:25711746-25711765 None:intergenic 40.0%
TTAAGAATTGTCTCGGCGTT+AGG + Chr4:25711703-25711722 None:intergenic 40.0%
TTGATCAACCAATGCTTTGC+AGG - Chr4:25711962-25711981 MsG0480019717.01.T01:CDS 40.0%
! GCAAAATGGTTTGTCTGAAG+GGG + Chr4:25711671-25711690 None:intergenic 40.0%
! GGCATTGAAAATGTTGGAGT+TGG - Chr4:25711813-25711832 MsG0480019717.01.T01:CDS 40.0%
! TGAGAATGTGACTTGTCTGT+TGG + Chr4:25711569-25711588 None:intergenic 40.0%
!! TGAGGAGGCATTGAAAATGT+TGG - Chr4:25711807-25711826 MsG0480019717.01.T01:CDS 40.0%
!! TGCAAAGCATTGGTTGATCA+AGG + Chr4:25711963-25711982 None:intergenic 40.0%
ATGTGATGCACATGTAGCCA+TGG - Chr4:25711636-25711655 MsG0480019717.01.T01:CDS 45.0%
ACCAATGCTTTGCAGGACCA+TGG - Chr4:25711969-25711988 MsG0480019717.01.T01:CDS 50.0%
CAACGAAACCACCGAGTTTG+AGG - Chr4:25711732-25711751 MsG0480019717.01.T01:CDS 50.0%
CTTCGAATCCTCAAACTCGG+TGG + Chr4:25711743-25711762 None:intergenic 50.0%
TCCATGGTCCTGCAAAGCAT+TGG + Chr4:25711973-25711992 None:intergenic 50.0%
TGAAGGGGAAAACACCACCA+TGG + Chr4:25711656-25711675 None:intergenic 50.0%
TGATGCACATGTAGCCATGG+TGG - Chr4:25711639-25711658 MsG0480019717.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr4 gene 25711493 25712014 25711493 ID=MsG0480019717.01;Name=MsG0480019717.01
Chr4 mRNA 25711493 25712014 25711493 ID=MsG0480019717.01.T01;Parent=MsG0480019717.01;Name=MsG0480019717.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|173
Chr4 exon 25711493 25712014 25711493 ID=MsG0480019717.01.T01:exon:15938;Parent=MsG0480019717.01.T01
Chr4 CDS 25711493 25712014 25711493 ID=MsG0480019717.01.T01:cds;Parent=MsG0480019717.01.T01
Gene Sequence

>MsG0480019717.01.T01

ATGAATATGGATAACAAAAGAAAGAAAAGTGTAGGGCACAAGAAGATTGAGATCAAGAAGATTGACAAAGCATCCAACAGACAAGTCACATTCTCAAAGAGAAGACAAGGTCTATTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGCACATGTAGCCATGGTGGTGTTTTCCCCTTCAGACAAACCATTTTGCTTTGGTCAACCTAACGCCGAGACAATTCTTAATAGCTACATCAACGAAACCACCGAGTTTGAGGATTCGAAGTCATTAGGTAATTCTTCAACCTATGAAGAGTACAATAGACAATATGAGGAGGCATTGAAAATGTTGGAGTTGGAGAAGAAGAAACTAGCCGATGTTAAAAATTTGAACAAAGGTGATTGGTGGAATGATTCCATTGATGATATGAGTATTGAAGAGCTTGAACAATTTATGGTGTCAATTAAAGAGTTAAAGAGTAACCTTGATCAACCAATGCTTTGCAGGACCATGGAATTTCTTGATCTGGATGAATGA
Protein sequence

>MsG0480019717.01.T01

MNMDNKRKKSVGHKKIEIKKIDKASNRQVTFSKRRQGLFKKASELCVLCDAHVAMVVFSPSDKPFCFGQPNAETILNSYINETTEFEDSKSLGNSSTYEEYNRQYEEALKMLELEKKKLADVKNLNKGDWWNDSIDDMSIEELEQFMVSIKELKSNLDQPMLCRTMEFLDLDE*