AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020030.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020030.01.T01 MTR_5g057715 56.983 179 49 6 17 182 18 181 1.46e-50 166
MsG0480020030.01.T01 MTR_5g057715 71.765 85 23 1 100 184 260 343 2.07e-31 116
MsG0480020030.01.T01 MTR_8g095235 56.364 165 58 2 19 182 2 153 6.26e-46 152
MsG0480020030.01.T01 MTR_8g095235 61.842 76 29 0 105 180 205 280 4.35e-26 101
MsG0480020030.01.T01 MTR_0014s0410 55.000 160 53 3 19 175 2 145 1.51e-45 147
MsG0480020030.01.T01 MTR_6g471190 43.556 225 65 5 19 181 2 226 1.70e-44 147
MsG0480020030.01.T01 MTR_1g050415 58.268 127 48 2 61 187 122 243 8.86e-43 143
MsG0480020030.01.T01 MTR_7g034030 54.194 155 58 3 19 173 2 143 5.45e-39 130
MsG0480020030.01.T01 MTR_0389s0020 71.605 81 23 0 103 183 26 106 8.09e-38 126
MsG0480020030.01.T01 MTR_3g463110 52.597 154 63 3 19 168 2 149 2.76e-36 128
MsG0480020030.01.T01 MTR_3g463110 66.292 89 29 1 96 184 193 280 3.65e-30 112
MsG0480020030.01.T01 MTR_3g090200 53.793 145 53 4 17 160 18 149 8.52e-36 122
MsG0480020030.01.T01 MTR_1g071170 53.793 145 53 4 17 160 18 149 2.49e-35 121
MsG0480020030.01.T01 MTR_2g083745 53.793 145 53 4 17 160 18 149 9.35e-35 120
MsG0480020030.01.T01 MTR_4g045717 51.667 120 52 2 63 182 13 126 1.73e-34 118
MsG0480020030.01.T01 MTR_7g095830 48.780 164 82 1 19 182 2 163 1.60e-33 118
MsG0480020030.01.T01 MTR_0001s0260 61.364 88 34 0 95 182 51 138 2.59e-32 113
MsG0480020030.01.T01 MTR_4g033680 46.591 176 42 3 12 187 66 189 1.21e-31 114
MsG0480020030.01.T01 MTR_4g045943 59.783 92 36 1 91 182 67 157 8.04e-31 110
MsG0480020030.01.T01 MTR_8g059190 60.241 83 32 1 100 182 39 120 2.47e-29 105
MsG0480020030.01.T01 MTR_3g040760 58.228 79 33 0 109 187 1 79 3.18e-28 103
MsG0480020030.01.T01 MTR_0157s0040 60.811 74 29 0 111 184 1 74 1.55e-27 101
MsG0480020030.01.T01 MTR_0002s0070 64.474 76 27 0 105 180 41 116 2.28e-27 100
MsG0480020030.01.T01 MTR_0155s0050 63.889 72 25 1 97 168 57 127 1.39e-26 99.8
MsG0480020030.01.T01 MTR_0441s0020 64.706 68 24 0 111 178 1 68 3.30e-25 94.4
MsG0480020030.01.T01 MTR_3g090210 61.765 68 26 0 111 178 1 68 6.92e-24 92.0
MsG0480020030.01.T01 MTR_0015s0170 55.263 76 34 0 105 180 63 138 2.10e-22 88.2
MsG0480020030.01.T01 MTR_1g036650 59.459 74 29 1 100 173 136 208 3.99e-22 89.4
MsG0480020030.01.T01 MTR_6g015335 41.958 143 30 4 19 160 2 92 1.68e-20 82.0
MsG0480020030.01.T01 MTR_0362s0010 63.462 52 19 0 122 173 35 86 6.22e-20 80.5
MsG0480020030.01.T01 MTR_0005s0250 54.717 53 24 0 121 173 34 86 1.42e-16 71.6
MsG0480020030.01.T01 MTR_3g048545 53.659 82 38 0 106 187 226 307 2.97e-16 75.9
MsG0480020030.01.T01 MTR_2g076103 56.098 82 36 0 106 187 226 307 3.07e-16 76.3
MsG0480020030.01.T01 MTR_7g081462 53.659 82 38 0 106 187 226 307 3.38e-16 75.9
MsG0480020030.01.T01 MTR_3g020105 53.659 82 38 0 106 187 223 304 1.47e-15 73.9
MsG0480020030.01.T01 MTR_2g037220 52.439 82 39 0 106 187 226 307 1.67e-15 73.9
MsG0480020030.01.T01 MTR_0389s0010 58.333 72 17 2 17 76 38 108 1.76e-15 69.3
MsG0480020030.01.T01 MTR_0159s0060 53.659 82 38 0 106 187 71 152 2.45e-15 71.6
MsG0480020030.01.T01 MTR_5g057040 54.430 79 36 0 109 187 413 491 6.26e-15 72.4
MsG0480020030.01.T01 MTR_2g064025 52.439 82 39 0 106 187 220 301 1.46e-14 71.2
MsG0480020030.01.T01 MTR_0260s0010 52.439 82 39 0 106 187 425 506 6.26e-14 69.7
MsG0480020030.01.T01 MTR_6g464470 56.522 69 30 0 106 174 345 413 3.77e-12 64.3
MsG0480020030.01.T02 MTR_5g057715 57.865 178 48 6 17 181 18 181 1.95e-51 169
MsG0480020030.01.T02 MTR_5g057715 71.765 85 23 1 99 183 260 343 2.37e-31 116
MsG0480020030.01.T02 MTR_8g095235 52.571 175 48 3 19 181 2 153 2.93e-46 153
MsG0480020030.01.T02 MTR_8g095235 61.842 76 29 0 104 179 205 280 5.05e-26 101
MsG0480020030.01.T02 MTR_0014s0410 54.088 159 55 4 19 174 2 145 3.59e-45 146
MsG0480020030.01.T02 MTR_1g050415 56.349 126 51 2 61 186 122 243 2.80e-41 139
MsG0480020030.01.T02 MTR_7g034030 53.247 154 60 3 19 172 2 143 8.14e-39 130
MsG0480020030.01.T02 MTR_0389s0020 71.605 81 23 0 102 182 26 106 9.73e-38 126
MsG0480020030.01.T02 MTR_3g463110 53.289 152 64 3 19 167 2 149 1.55e-37 131
MsG0480020030.01.T02 MTR_3g463110 66.292 89 29 1 95 183 193 280 4.65e-30 111
MsG0480020030.01.T02 MTR_1g071170 50.641 156 40 5 17 159 18 149 1.08e-36 125
MsG0480020030.01.T02 MTR_2g083745 50.641 156 40 5 17 159 18 149 2.08e-36 124
MsG0480020030.01.T02 MTR_3g090200 50.000 156 41 5 17 159 18 149 1.55e-35 122
MsG0480020030.01.T02 MTR_4g045717 54.622 119 49 2 63 181 13 126 9.50e-35 119
MsG0480020030.01.T02 MTR_7g095830 49.693 163 81 1 19 181 2 163 3.29e-34 120
MsG0480020030.01.T02 MTR_4g033680 49.143 175 38 3 12 186 66 189 2.22e-32 116
MsG0480020030.01.T02 MTR_0001s0260 61.364 88 34 0 94 181 51 138 2.28e-32 113
MsG0480020030.01.T02 MTR_4g045943 59.783 92 36 1 90 181 67 157 1.10e-30 110
MsG0480020030.01.T02 MTR_8g059190 60.241 83 32 1 99 181 39 120 2.15e-29 105
MsG0480020030.01.T02 MTR_6g471190 64.474 76 27 0 105 180 151 226 2.86e-28 105
MsG0480020030.01.T02 MTR_6g471190 49.405 168 48 3 19 186 2 132 2.15e-27 103
MsG0480020030.01.T02 MTR_3g040760 58.228 79 33 0 108 186 1 79 2.96e-28 103
MsG0480020030.01.T02 MTR_0157s0040 60.811 74 29 0 110 183 1 74 1.44e-27 101
MsG0480020030.01.T02 MTR_0002s0070 64.474 76 27 0 104 179 41 116 2.57e-27 100
MsG0480020030.01.T02 MTR_0155s0050 63.889 72 25 1 96 167 57 127 1.12e-26 100
MsG0480020030.01.T02 MTR_0441s0020 64.706 68 24 0 110 177 1 68 4.11e-25 94.0
MsG0480020030.01.T02 MTR_3g090210 64.615 65 23 0 110 174 1 65 7.49e-24 92.0
MsG0480020030.01.T02 MTR_0015s0170 55.263 76 34 0 104 179 63 138 2.13e-22 88.2
MsG0480020030.01.T02 MTR_6g015335 42.254 142 30 4 19 159 2 92 2.89e-22 86.3
MsG0480020030.01.T02 MTR_1g036650 59.459 74 29 1 99 172 136 208 4.27e-22 89.4
MsG0480020030.01.T02 MTR_0362s0010 63.462 52 19 0 121 172 35 86 6.60e-20 80.1
MsG0480020030.01.T02 MTR_0005s0250 54.717 53 24 0 120 172 34 86 1.56e-16 71.2
MsG0480020030.01.T02 MTR_3g048545 53.659 82 38 0 105 186 226 307 3.10e-16 75.9
MsG0480020030.01.T02 MTR_2g076103 56.098 82 36 0 105 186 226 307 3.10e-16 76.3
MsG0480020030.01.T02 MTR_7g081462 53.659 82 38 0 105 186 226 307 3.42e-16 75.9
MsG0480020030.01.T02 MTR_3g020105 53.659 82 38 0 105 186 223 304 1.46e-15 73.9
MsG0480020030.01.T02 MTR_0389s0010 57.534 73 18 2 17 77 38 109 1.53e-15 69.3
MsG0480020030.01.T02 MTR_2g037220 52.439 82 39 0 105 186 226 307 1.55e-15 73.9
MsG0480020030.01.T02 MTR_0159s0060 53.659 82 38 0 105 186 71 152 2.23e-15 72.0
MsG0480020030.01.T02 MTR_5g057040 54.430 79 36 0 108 186 413 491 5.18e-15 72.8
MsG0480020030.01.T02 MTR_2g064025 52.439 82 39 0 105 186 220 301 1.48e-14 71.2
MsG0480020030.01.T02 MTR_0260s0010 52.439 82 39 0 105 186 425 506 5.71e-14 69.7
MsG0480020030.01.T02 MTR_6g464470 56.522 69 30 0 105 173 345 413 3.22e-12 64.3
MsG0480020030.01.T02 MTR_0600s0020 54.167 48 22 0 110 157 1 48 7.89e-11 57.4
MsG0480020030.01.T03 MTR_5g057715 60.843 166 50 4 6 158 18 181 5.63e-55 177
MsG0480020030.01.T03 MTR_5g057715 71.765 85 23 1 76 160 260 343 7.02e-32 117
MsG0480020030.01.T03 MTR_0014s0410 59.864 147 53 3 8 151 2 145 1.89e-48 154
MsG0480020030.01.T03 MTR_8g095235 56.442 163 48 3 8 158 2 153 6.63e-48 156
MsG0480020030.01.T03 MTR_8g095235 61.842 76 29 0 81 156 205 280 1.19e-26 102
MsG0480020030.01.T03 MTR_7g034030 59.441 143 56 2 8 149 2 143 2.21e-42 138
MsG0480020030.01.T03 MTR_1g050415 59.350 123 40 3 50 163 122 243 4.62e-42 140
MsG0480020030.01.T03 MTR_3g463110 53.020 149 57 2 8 144 2 149 2.25e-39 135
MsG0480020030.01.T03 MTR_3g463110 64.516 93 32 1 68 160 189 280 5.58e-31 113
MsG0480020030.01.T03 MTR_1g071170 54.861 144 40 5 6 136 18 149 1.48e-38 129
MsG0480020030.01.T03 MTR_0389s0020 70.732 82 24 0 79 160 26 107 2.29e-38 127
MsG0480020030.01.T03 MTR_2g083745 54.861 144 40 5 6 136 18 149 6.35e-38 127
MsG0480020030.01.T03 MTR_3g090200 54.167 144 41 5 6 136 18 149 2.10e-37 125
MsG0480020030.01.T03 MTR_7g095830 49.390 164 68 3 8 158 2 163 7.37e-35 121
MsG0480020030.01.T03 MTR_4g033680 52.761 163 38 3 1 163 66 189 1.47e-34 120
MsG0480020030.01.T03 MTR_4g033680 85.000 40 6 0 8 47 2 41 9.43e-14 66.6
MsG0480020030.01.T03 MTR_4g045717 53.043 115 45 2 52 158 13 126 5.88e-34 116
MsG0480020030.01.T03 MTR_0001s0260 62.069 87 33 0 72 158 52 138 8.16e-33 114
MsG0480020030.01.T03 MTR_4g045943 57.895 95 37 1 64 158 66 157 2.67e-31 110
MsG0480020030.01.T03 MTR_8g059190 60.241 83 32 1 76 158 39 120 1.11e-29 105
MsG0480020030.01.T03 MTR_6g471190 53.205 156 48 3 8 163 2 132 3.80e-29 107
MsG0480020030.01.T03 MTR_6g471190 64.474 76 27 0 82 157 151 226 6.50e-29 106
MsG0480020030.01.T03 MTR_3g040760 58.228 79 33 0 85 163 1 79 1.76e-28 102
MsG0480020030.01.T03 MTR_0157s0040 60.811 74 29 0 87 160 1 74 5.00e-28 101
MsG0480020030.01.T03 MTR_0002s0070 64.474 76 27 0 81 156 41 116 5.83e-28 100
MsG0480020030.01.T03 MTR_0155s0050 59.494 79 31 1 66 144 50 127 9.30e-28 102
MsG0480020030.01.T03 MTR_0441s0020 64.706 68 24 0 87 154 1 68 1.29e-25 94.7
MsG0480020030.01.T03 MTR_3g090210 64.615 65 23 0 87 151 1 65 1.62e-24 92.8
MsG0480020030.01.T03 MTR_6g015335 46.154 130 30 4 8 136 2 92 7.75e-24 89.7
MsG0480020030.01.T03 MTR_0015s0170 55.263 76 34 0 81 156 63 138 9.37e-23 88.2
MsG0480020030.01.T03 MTR_1g036650 59.459 74 29 1 76 149 136 208 2.08e-22 89.4
MsG0480020030.01.T03 MTR_0362s0010 63.462 52 19 0 98 149 35 86 2.48e-20 80.5
MsG0480020030.01.T03 MTR_0005s0250 54.717 53 24 0 97 149 34 86 8.59e-17 71.2
MsG0480020030.01.T03 MTR_0389s0010 61.644 73 19 2 6 78 38 101 1.02e-16 72.0
MsG0480020030.01.T03 MTR_3g048545 53.659 82 38 0 82 163 226 307 1.30e-16 76.3
MsG0480020030.01.T03 MTR_2g076103 56.098 82 36 0 82 163 226 307 1.36e-16 76.3
MsG0480020030.01.T03 MTR_7g081462 53.659 82 38 0 82 163 226 307 1.73e-16 75.9
MsG0480020030.01.T03 MTR_3g020105 53.659 82 38 0 82 163 223 304 7.34e-16 73.9
MsG0480020030.01.T03 MTR_2g037220 52.439 82 39 0 82 163 226 307 8.50e-16 73.9
MsG0480020030.01.T03 MTR_0159s0060 53.659 82 38 0 82 163 71 152 1.48e-15 71.6
MsG0480020030.01.T03 MTR_5g057040 53.659 82 38 0 82 163 410 491 2.64e-15 72.8
MsG0480020030.01.T03 MTR_2g064025 52.439 82 39 0 82 163 220 301 6.98e-15 71.2
MsG0480020030.01.T03 MTR_0260s0010 52.439 82 39 0 82 163 425 506 3.85e-14 69.3
MsG0480020030.01.T03 MTR_6g464470 56.522 69 30 0 82 150 345 413 1.45e-12 64.7
MsG0480020030.01.T03 MTR_0600s0020 54.167 48 22 0 87 134 1 48 6.03e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGTCATCGATCAGTTTC+TGG 0.160525 4:-32348879 None:intergenic
CATGACCTTGTGCCCCTTGA+TGG 0.328767 4:-32348822 None:intergenic
TGGACAAGTAGCTGACCTTC+GGG 0.377126 4:-32348628 None:intergenic
CCTGTGTTGTCGAGGTTGTT+GGG 0.398919 4:-32348336 None:intergenic
CTGGACAAGTAGCTGACCTT+CGG 0.405014 4:-32348629 None:intergenic
AGATCAAACTGCAGTGCTCT+TGG 0.406045 4:-32348673 None:intergenic
CACCAAGCCGGCAATTTCTT+CGG 0.414111 4:-32348775 None:intergenic
GCCGGCAATTTCTTCGGTAC+TGG 0.414581 4:-32348769 None:intergenic
TCCAGTACCGAAGAAATTGC+CGG 0.415293 4:+32348768 MsG0480020030.01.T02:CDS
GGAGCCTGTTGTTGAGGTTG+TGG 0.417773 4:-32348652 None:intergenic
CCTGTTGTTGAGGTTGTGGC+TGG 0.423985 4:-32348648 None:intergenic
CGGAGAGGTAACAACGCTTC+GGG 0.434533 4:+32348247 MsG0480020030.01.T02:CDS
GCCTGTGTTGTCGAGGTTGT+TGG 0.438843 4:-32348337 None:intergenic
TACCGAAGAAATTGCCGGCT+TGG 0.443021 4:+32348773 MsG0480020030.01.T02:CDS
TTACCTCTCCGCGGAGTTCG+TGG 0.451894 4:-32348235 None:intergenic
CCCAATTGCGGCTACACGCT+CGG 0.454837 4:-32348925 None:intergenic
AGCAACTCTGCGTACTTCAT+AGG 0.459114 4:-32348700 None:intergenic
GGTAACAACGCTTCGGGCCG+AGG 0.469246 4:+32348253 MsG0480020030.01.T02:CDS
AATTTCTTCGGTACTGGAAG+AGG 0.470714 4:-32348763 None:intergenic
GCGGAGAGGTAACAACGCTT+CGG 0.481066 4:+32348246 MsG0480020030.01.T02:CDS
CCAGCCACAACCTCAACAAC+AGG 0.482252 4:+32348648 MsG0480020030.01.T02:CDS
CGAAGAAATTGCCGGCTTGG+TGG 0.487786 4:+32348776 MsG0480020030.01.T02:CDS
AAAGAGCTTCGTACAAACTA+AGG 0.501460 4:+32348738 MsG0480020030.01.T02:CDS
GCTCTTGGAGCCTGTTGTTG+AGG 0.506626 4:-32348658 None:intergenic
CTCGGATTCAAATTCTTGAA+AGG 0.523563 4:-32348907 None:intergenic
TGGAAGACACAAAAGAGATC+AGG 0.524646 4:-32348802 None:intergenic
ATATCCTCAAAACCAGGCTA+AGG 0.525428 4:+32348373 MsG0480020030.01.T02:CDS
CATATGCGAACTGAAATTGA+AGG 0.541638 4:-32348167 None:intergenic
TAACTTAGTATCTTCACTGA+TGG 0.542935 4:+32348289 MsG0480020030.01.T02:CDS
TATCCTCAAAACCAGGCTAA+GGG 0.545337 4:+32348374 MsG0480020030.01.T02:CDS
CGAGGTTGTTGGGGACATAG+TGG 0.547553 4:-32348326 None:intergenic
GTCTTCCATCAAGGGGCACA+AGG 0.564751 4:+32348817 MsG0480020030.01.T02:CDS
ATCTTCACTGATGGTTACAC+AGG 0.581811 4:+32348298 MsG0480020030.01.T02:CDS
CTGTGTTGTCGAGGTTGTTG+GGG 0.582819 4:-32348335 None:intergenic
AGATCAGGTCTCCACCAAGC+CGG 0.583080 4:-32348787 None:intergenic
AACGGATCAACTTGAGCAAG+AGG 0.587088 4:+32348211 MsG0480020030.01.T02:CDS
GTTAGTTAACTTCTCTACCT+CGG 0.590070 4:-32348270 None:intergenic
TCCTCAAAACCAGGCTAAGG+GGG 0.591335 4:+32348376 MsG0480020030.01.T02:CDS
GACAAGTAGCTGACCTTCGG+GGG 0.622702 4:-32348626 None:intergenic
CAGTTTATATCCTCAAAACC+AGG 0.630302 4:+32348367 MsG0480020030.01.T02:CDS
ATCCTCAAAACCAGGCTAAG+GGG 0.638973 4:+32348375 MsG0480020030.01.T02:CDS
TTGTAGAGCCTGTGTTGTCG+AGG 0.639065 4:-32348344 None:intergenic
CCCAACAACCTCGACAACAC+AGG 0.640530 4:+32348336 MsG0480020030.01.T02:CDS
GGTCCACGAACTCCGCGGAG+AGG 0.672065 4:+32348232 MsG0480020030.01.T02:CDS
GGACAAGTAGCTGACCTTCG+GGG 0.672133 4:-32348627 None:intergenic
CAAGAGGTCCACGAACTCCG+CGG 0.706087 4:+32348227 MsG0480020030.01.T02:CDS
GAAGCGTTGTTACCTCTCCG+CGG 0.735149 4:-32348244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACATTCGTACAAACAAAAAA+CGG + Chr4:32348193-32348212 MsG0480020030.01.T02:CDS 25.0%
!!! AAGCTCTTTTTAAGCAAATA+CGG - Chr4:32348727-32348746 None:intergenic 25.0%
TAACTTAGTATCTTCACTGA+TGG + Chr4:32348289-32348308 MsG0480020030.01.T02:CDS 30.0%
TTTCTTGTGCATTTCATCAA+GGG + Chr4:32348527-32348546 MsG0480020030.01.T02:intron 30.0%
AAAGAGCTTCGTACAAACTA+AGG + Chr4:32348738-32348757 MsG0480020030.01.T02:CDS 35.0%
CAGTTTATATCCTCAAAACC+AGG + Chr4:32348367-32348386 MsG0480020030.01.T02:CDS 35.0%
CATATGCGAACTGAAATTGA+AGG - Chr4:32348170-32348189 None:intergenic 35.0%
CTCGGATTCAAATTCTTGAA+AGG - Chr4:32348910-32348929 None:intergenic 35.0%
CTTGATGAAATGCACAAGAA+AGG - Chr4:32348528-32348547 None:intergenic 35.0%
CTTTCTTGTGCATTTCATCA+AGG + Chr4:32348526-32348545 MsG0480020030.01.T02:intron 35.0%
GTTAGTTAACTTCTCTACCT+CGG - Chr4:32348273-32348292 None:intergenic 35.0%
TTCTTGTGCATTTCATCAAG+GGG + Chr4:32348528-32348547 MsG0480020030.01.T02:intron 35.0%
! TCTTTTGTGTCTTCCATCAA+GGG + Chr4:32348809-32348828 MsG0480020030.01.T02:CDS 35.0%
ATATCCTCAAAACCAGGCTA+AGG + Chr4:32348373-32348392 MsG0480020030.01.T02:CDS 40.0%
ATCTTCACTGATGGTTACAC+AGG + Chr4:32348298-32348317 MsG0480020030.01.T02:CDS 40.0%
CTTTCAAGACTGTAGTTCAG+AGG + Chr4:32348581-32348600 MsG0480020030.01.T02:intron 40.0%
TATCCTCAAAACCAGGCTAA+GGG + Chr4:32348374-32348393 MsG0480020030.01.T02:CDS 40.0%
TGGAAGACACAAAAGAGATC+AGG - Chr4:32348805-32348824 None:intergenic 40.0%
! AATTTCTTCGGTACTGGAAG+AGG - Chr4:32348766-32348785 None:intergenic 40.0%
! ATACCCCATGGCAATCTTTT+CGG - Chr4:32348497-32348516 None:intergenic 40.0%
! CTCTTTTGTGTCTTCCATCA+AGG + Chr4:32348808-32348827 MsG0480020030.01.T02:CDS 40.0%
! CTTTTGTGTCTTCCATCAAG+GGG + Chr4:32348810-32348829 MsG0480020030.01.T02:CDS 40.0%
AACGGATCAACTTGAGCAAG+AGG + Chr4:32348211-32348230 MsG0480020030.01.T02:CDS 45.0%
AGATCAAACTGCAGTGCTCT+TGG - Chr4:32348676-32348695 None:intergenic 45.0%
AGCAACTCTGCGTACTTCAT+AGG - Chr4:32348703-32348722 None:intergenic 45.0%
ATCCTCAAAACCAGGCTAAG+GGG + Chr4:32348375-32348394 MsG0480020030.01.T02:CDS 45.0%
CGTTGTCATCGATCAGTTTC+TGG - Chr4:32348882-32348901 None:intergenic 45.0%
GTTTCCTACACTGCTTAAGG+AGG + Chr4:32348439-32348458 MsG0480020030.01.T02:intron 45.0%
TCCAATCCCTGTGAAATACG+CGG + Chr4:32348412-32348431 MsG0480020030.01.T02:intron 45.0%
! GAGGTGGTCTAGTTTGGATT+AGG - Chr4:32348466-32348485 None:intergenic 45.0%
! GCTGTTTCCTACACTGCTTA+AGG + Chr4:32348436-32348455 MsG0480020030.01.T02:intron 45.0%
! TCCAGTACCGAAGAAATTGC+CGG + Chr4:32348768-32348787 MsG0480020030.01.T02:CDS 45.0%
AACAGCTCCGCGTATTTCAC+AGG - Chr4:32348422-32348441 None:intergenic 50.0%
AAGGTCAGCTCTATACCCCA+TGG - Chr4:32348509-32348528 None:intergenic 50.0%
ACAGCTCCGCGTATTTCACA+GGG - Chr4:32348421-32348440 None:intergenic 50.0%
AGGTCCTCCTTAAGCAGTGT+AGG - Chr4:32348446-32348465 None:intergenic 50.0%
CACCAAGCCGGCAATTTCTT+CGG - Chr4:32348778-32348797 None:intergenic 50.0%
CCTGTGTTGTCGAGGTTGTT+GGG - Chr4:32348339-32348358 None:intergenic 50.0%
CTGGACAAGTAGCTGACCTT+CGG - Chr4:32348632-32348651 None:intergenic 50.0%
CTGTGTTGTCGAGGTTGTTG+GGG - Chr4:32348338-32348357 None:intergenic 50.0%
GTGCCGAAAAGATTGCCATG+GGG + Chr4:32348491-32348510 MsG0480020030.01.T02:intron 50.0%
TCCGCGTATTTCACAGGGAT+TGG - Chr4:32348416-32348435 None:intergenic 50.0%
TCCTCAAAACCAGGCTAAGG+GGG + Chr4:32348376-32348395 MsG0480020030.01.T02:CDS 50.0%
TGGACAAGTAGCTGACCTTC+GGG - Chr4:32348631-32348650 None:intergenic 50.0%
TTGTAGAGCCTGTGTTGTCG+AGG - Chr4:32348347-32348366 None:intergenic 50.0%
! CATGGCAATCTTTTCGGCAC+CGG - Chr4:32348491-32348510 None:intergenic 50.0%
! GGTGCCGAAAAGATTGCCAT+GGG + Chr4:32348490-32348509 MsG0480020030.01.T02:intron 50.0%
! TACCGAAGAAATTGCCGGCT+TGG + Chr4:32348773-32348792 MsG0480020030.01.T02:CDS 50.0%
AGATCAGGTCTCCACCAAGC+CGG - Chr4:32348790-32348809 None:intergenic 55.0%
CATCGCTCGATATCGTGACC+TGG - Chr4:32348556-32348575 None:intergenic 55.0%
CATGACCTTGTGCCCCTTGA+TGG - Chr4:32348825-32348844 None:intergenic 55.0%
CCAAACTAGACCACCTCCTC+CGG + Chr4:32348469-32348488 MsG0480020030.01.T02:intron 55.0%
CCAGCCACAACCTCAACAAC+AGG + Chr4:32348648-32348667 MsG0480020030.01.T02:CDS 55.0%
CCCAACAACCTCGACAACAC+AGG + Chr4:32348336-32348355 MsG0480020030.01.T02:CDS 55.0%
CCTGTTGTTGAGGTTGTGGC+TGG - Chr4:32348651-32348670 None:intergenic 55.0%
CGAGGTTGTTGGGGACATAG+TGG - Chr4:32348329-32348348 None:intergenic 55.0%
CGGAGAGGTAACAACGCTTC+GGG + Chr4:32348247-32348266 MsG0480020030.01.T02:CDS 55.0%
GACAAGTAGCTGACCTTCGG+GGG - Chr4:32348629-32348648 None:intergenic 55.0%
GCCGGCAATTTCTTCGGTAC+TGG - Chr4:32348772-32348791 None:intergenic 55.0%
GCCTGTGTTGTCGAGGTTGT+TGG - Chr4:32348340-32348359 None:intergenic 55.0%
GCGGAGAGGTAACAACGCTT+CGG + Chr4:32348246-32348265 MsG0480020030.01.T02:CDS 55.0%
GCTCTTGGAGCCTGTTGTTG+AGG - Chr4:32348661-32348680 None:intergenic 55.0%
GGACAAGTAGCTGACCTTCG+GGG - Chr4:32348630-32348649 None:intergenic 55.0%
GGAGCCTGTTGTTGAGGTTG+TGG - Chr4:32348655-32348674 None:intergenic 55.0%
! CGGTGCCGAAAAGATTGCCA+TGG + Chr4:32348489-32348508 MsG0480020030.01.T02:intron 55.0%
! GTCTTCCATCAAGGGGCACA+AGG + Chr4:32348817-32348836 MsG0480020030.01.T02:CDS 55.0%
!! AATCTTTTCGGCACCGGAGG+AGG - Chr4:32348485-32348504 None:intergenic 55.0%
!! CGAAGAAATTGCCGGCTTGG+TGG + Chr4:32348776-32348795 MsG0480020030.01.T02:CDS 55.0%
!! GAAGCGTTGTTACCTCTCCG+CGG - Chr4:32348247-32348266 None:intergenic 55.0%
!! GCATTTCATCAAGGGGCACC+AGG + Chr4:32348535-32348554 MsG0480020030.01.T02:intron 55.0%
ACTTCGATGCCCCCTTAGCC+TGG - Chr4:32348388-32348407 None:intergenic 60.0%
CAAGAGGTCCACGAACTCCG+CGG + Chr4:32348227-32348246 MsG0480020030.01.T02:CDS 60.0%
CCGGAGGAGGTGGTCTAGTT+TGG - Chr4:32348472-32348491 None:intergenic 60.0%
GATAACACCCTGTCCCCCGA+AGG + Chr4:32348613-32348632 MsG0480020030.01.T02:intron 60.0%
TAGCTGACCTTCGGGGGACA+GGG - Chr4:32348623-32348642 None:intergenic 60.0%
TTACCTCTCCGCGGAGTTCG+TGG - Chr4:32348238-32348257 None:intergenic 60.0%
! CGGGGGACAGGGTGTTATCT+TGG - Chr4:32348612-32348631 None:intergenic 60.0%
!! GGCAATCTTTTCGGCACCGG+AGG - Chr4:32348488-32348507 None:intergenic 60.0%
!!! GCCCCCTTAGCCTGGTTTTG+AGG - Chr4:32348380-32348399 None:intergenic 60.0%
GGTAACAACGCTTCGGGCCG+AGG + Chr4:32348253-32348272 MsG0480020030.01.T02:CDS 65.0%
GTAGCTGACCTTCGGGGGAC+AGG - Chr4:32348624-32348643 None:intergenic 65.0%
!! CTTTTCGGCACCGGAGGAGG+TGG - Chr4:32348482-32348501 None:intergenic 65.0%
GGTCCACGAACTCCGCGGAG+AGG + Chr4:32348232-32348251 MsG0480020030.01.T02:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 32348161 32348936 32348161 ID=MsG0480020030.01;Name=MsG0480020030.01
Chr4 mRNA 32348161 32348936 32348161 ID=MsG0480020030.01.T01;Parent=MsG0480020030.01;Name=MsG0480020030.01.T01;_AED=0.37;_eAED=0.38;_QI=0|0|0|1|0|0|2|0|187
Chr4 exon 32348601 32348936 32348601 ID=MsG0480020030.01.T01:exon:36675;Parent=MsG0480020030.01.T01
Chr4 exon 32348161 32348388 32348161 ID=MsG0480020030.01.T01:exon:36674;Parent=MsG0480020030.01.T01
Chr4 CDS 32348161 32348388 32348161 ID=MsG0480020030.01.T01:cds;Parent=MsG0480020030.01.T01
Chr4 CDS 32348601 32348936 32348601 ID=MsG0480020030.01.T01:cds;Parent=MsG0480020030.01.T01
Chr4 mRNA 32348161 32348936 32348161 ID=MsG0480020030.01.T02;Parent=MsG0480020030.01;Name=MsG0480020030.01.T02;_AED=0.37;_eAED=0.38;_QI=0|0|0|1|0|0|2|0|186
Chr4 exon 32348635 32348936 32348635 ID=MsG0480020030.01.T02:exon:36677;Parent=MsG0480020030.01.T02
Chr4 exon 32348161 32348419 32348161 ID=MsG0480020030.01.T02:exon:36676;Parent=MsG0480020030.01.T02
Chr4 CDS 32348161 32348419 32348161 ID=MsG0480020030.01.T02:cds;Parent=MsG0480020030.01.T02
Chr4 CDS 32348635 32348936 32348635 ID=MsG0480020030.01.T02:cds;Parent=MsG0480020030.01.T02
Chr4 mRNA 32348194 32348936 32348194 ID=MsG0480020030.01.T03;Parent=MsG0480020030.01;Name=MsG0480020030.01.T03;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|0|0|2|0|163
Chr4 exon 32348658 32348936 32348658 ID=MsG0480020030.01.T03:exon:36679;Parent=MsG0480020030.01.T03
Chr4 exon 32348194 32348406 32348194 ID=MsG0480020030.01.T03:exon:36678;Parent=MsG0480020030.01.T03
Chr4 CDS 32348194 32348406 32348194 ID=MsG0480020030.01.T03:cds;Parent=MsG0480020030.01.T03
Chr4 CDS 32348658 32348936 32348658 ID=MsG0480020030.01.T03:cds;Parent=MsG0480020030.01.T03
Gene Sequence

>MsG0480020030.01.T01

TGTCGTCCTTCAATTTCAGTTCGCATATGCAGACATTCGTACAAACAAAAAACGGATCAACTTGAGCAAGAGGTCCACGAACTCCGCGGAGAGGTAACAACGCTTCGGGCCGAGGTAGAGAAGTTAACTAACTTAGTATCTTCACTGATGGTTACACAGGTTCAACCACTATGTCCCCAACAACCTCGACAACACAGGCTCTACAACAGTTTATATCCTCAAAACCAGAGGTTAATCCAAGATAACACCCTGTCCCCCGAAGGTCAGCTACTTGTCCAGCCACAACCTCAACAACAGGCTCCAAGAGCACTGCAGTTTGATCTGATTCCTATGAAGTACGCAGAGTTGCTTCCGTATTTGCTTAAAAAGAGCTTCGTACAAACTAAGGCACCTCTTCCAGTACCGAAGAAATTGCCGGCTTGGTGGAGACCTGATCTCTTTTGTGTCTTCCATCAAGGGGCACAAGGTCATGATGTTGAGCACTGTTTCTCTTTAAAGATTGAAGTCCAGAAACTGATCGATGACAACGTCTTGCCTTTCAAGAATTTGAATCCGAGCGTGTAG

>MsG0480020030.01.T02

TGTCGTCCTTCAATTTCAGTTCGCATATGCAGACATTCGTACAAACAAAAAACGGATCAACTTGAGCAAGAGGTCCACGAACTCCGCGGAGAGGTAACAACGCTTCGGGCCGAGGTAGAGAAGTTAACTAACTTAGTATCTTCACTGATGGTTACACAGGTTCAACCACTATGTCCCCAACAACCTCGACAACACAGGCTCTACAACAGTTTATATCCTCAAAACCAGGCTAAGGGGGCATCGAAGTTTGATCCAATCCGTCAGCTACTTGTCCAGCCACAACCTCAACAACAGGCTCCAAGAGCACTGCAGTTTGATCTGATTCCTATGAAGTACGCAGAGTTGCTTCCGTATTTGCTTAAAAAGAGCTTCGTACAAACTAAGGCACCTCTTCCAGTACCGAAGAAATTGCCGGCTTGGTGGAGACCTGATCTCTTTTGTGTCTTCCATCAAGGGGCACAAGGTCATGATGTTGAGCACTGTTTCTCTTTAAAGATTGAAGTCCAGAAACTGATCGATGACAACGTCTTGCCTTTCAAGAATTTGAATCCGAGCGTGTAG

>MsG0480020030.01.T03

CATTCGTACAAACAAAAAACGGATCAACTTGAGCAAGAGGTCCACGAACTCCGCGGAGAGGTAACAACGCTTCGGGCCGAGGTAGAGAAGTTAACTAACTTAGTATCTTCACTGATGGTTACACAGGTTCAACCACTATGTCCCCAACAACCTCGACAACACAGGCTCTACAACAGTTTATATCCTCAAAACCAGGCTAAGGGGGCATCGAAGCCTCAACAACAGGCTCCAAGAGCACTGCAGTTTGATCTGATTCCTATGAAGTACGCAGAGTTGCTTCCGTATTTGCTTAAAAAGAGCTTCGTACAAACTAAGGCACCTCTTCCAGTACCGAAGAAATTGCCGGCTTGGTGGAGACCTGATCTCTTTTGTGTCTTCCATCAAGGGGCACAAGGTCATGATGTTGAGCACTGTTTCTCTTTAAAGATTGAAGTCCAGAAACTGATCGATGACAACGTCTTGCCTTTCAAGAATTTGAATCCGAGCGTGTAG
Protein sequence

>MsG0480020030.01.T01

CRPSISVRICRHSYKQKTDQLEQEVHELRGEVTTLRAEVEKLTNLVSSLMVTQVQPLCPQQPRQHRLYNSLYPQNQRLIQDNTLSPEGQLLVQPQPQQQAPRALQFDLIPMKYAELLPYLLKKSFVQTKAPLPVPKKLPAWWRPDLFCVFHQGAQGHDVEHCFSLKIEVQKLIDDNVLPFKNLNPSV*

>MsG0480020030.01.T02

CRPSISVRICRHSYKQKTDQLEQEVHELRGEVTTLRAEVEKLTNLVSSLMVTQVQPLCPQQPRQHRLYNSLYPQNQAKGASKFDPIRQLLVQPQPQQQAPRALQFDLIPMKYAELLPYLLKKSFVQTKAPLPVPKKLPAWWRPDLFCVFHQGAQGHDVEHCFSLKIEVQKLIDDNVLPFKNLNPSV*

>MsG0480020030.01.T03

HSYKQKTDQLEQEVHELRGEVTTLRAEVEKLTNLVSSLMVTQVQPLCPQQPRQHRLYNSLYPQNQAKGASKPQQQAPRALQFDLIPMKYAELLPYLLKKSFVQTKAPLPVPKKLPAWWRPDLFCVFHQGAQGHDVEHCFSLKIEVQKLIDDNVLPFKNLNPSV*