AlfalfaGEDB | MsG0480020173.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020173.01

KEGG: K09422
GO: GO:0003677
PFAM: PF00249

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020173.01.T01	XP_013442917.2	89.669	242	25	0	1	242	1	242	2.61E-159	451

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020173.01.T01	Q6R0A6	68.75	112	35	0	3	114	5	116	1.67E-51	172

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020173.01.T01	A0A396I3H2	89.669	242	25	0	1	242	1	242	1.25e-159	451

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0480020173.01.T01	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020173.01.T01	MTR_0063s0090	89.732	224	23	0	1	224	1	224	3.21e-150	417
MsG0480020173.01.T01	MTR_0008s0280	50.000	226	87	3	1	217	1	209	3.97e-70	215
MsG0480020173.01.T01	MTR_1g076150	44.490	245	101	4	1	234	1	221	2.12e-56	181
MsG0480020173.01.T01	MTR_1g043050	44.091	220	106	3	1	219	1	204	1.31e-55	179
MsG0480020173.01.T01	MTR_1g043080	42.735	234	113	4	1	234	1	213	3.76e-55	177
MsG0480020173.01.T01	MTR_2g089450	61.404	114	44	0	1	114	1	114	7.04e-51	166
MsG0480020173.01.T01	MTR_0251s0050	61.739	115	43	1	1	114	1	115	4.87e-50	165
MsG0480020173.01.T01	MTR_2g089420	41.071	224	110	8	1	217	1	209	5.81e-50	169
MsG0480020173.01.T01	MTR_0008s0390	60.870	115	44	1	1	114	1	115	1.35e-49	164
MsG0480020173.01.T01	MTR_8g095390	55.882	136	56	1	1	136	1	132	2.42e-49	164

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020173.01.T01	AT1G79180	68.750	112	35	0	3	114	5	116	1.70e-52	172
MsG0480020173.01.T01	AT1G16490	66.071	112	38	0	3	114	5	116	1.28e-50	166
MsG0480020173.01.T01	AT5G16770	50.920	163	68	3	1	162	1	152	1.45e-50	168
MsG0480020173.01.T01	AT5G16770	50.920	163	68	3	1	162	1	152	1.45e-50	168
MsG0480020173.01.T01	AT5G16770	50.920	163	68	3	1	162	1	152	1.86e-50	168
MsG0480020173.01.T01	AT5G16770	50.920	163	68	3	1	162	1	152	1.86e-50	168
MsG0480020173.01.T01	AT5G10280	61.404	114	44	0	1	114	1	114	2.46e-50	167
MsG0480020173.01.T01	AT4G21440	62.281	114	43	0	1	114	1	114	4.83e-50	167
MsG0480020173.01.T01	AT3G23250	61.475	122	45	1	1	122	1	120	4.87e-50	165
MsG0480020173.01.T01	AT1G35515	62.281	114	43	0	1	114	1	114	1.93e-49	161

Showing 1 to 10 of 224 entries

Previous1 2 3 4 5…23Next

Find 41 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTACCTGCAAGCTT+GGG	0.406464	4:+35577423	None:intergenic
AACATGTACCTGCAAGCTTG+GGG	0.636122	4:+35577424	None:intergenic
AACATTGTCTTCTGCCATTA+TGG	0.133872	4:+35576055	None:intergenic
ACATCAGAGATAGGGATTTC+AGG	0.322596	4:+35576176	None:intergenic
ACATTGTCTTCTGCCATTAT+GGG	0.355335	4:+35576056	None:intergenic
ACCACGAGATAAAGAACTAT+TGG	0.463630	4:-35576313	MsG0480020173.01.T01:CDS
ACTTGATATCTCATTAGTGG+TGG	0.574720	4:+35575962	None:intergenic
AGAAACATGGTCATTCTAAT+TGG	0.262456	4:-35577455	MsG0480020173.01.T01:CDS
AGGTGCATGGAGTAGAGATG+AGG	0.501985	4:-35577502	MsG0480020173.01.T01:CDS
AGTGATTATATTCAGAAACA+TGG	0.618117	4:-35577468	MsG0480020173.01.T01:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACATGGTCATTCTAAT+TGG	-	Chr4:35575996-35576015	MsG0480020173.01.T01:CDS	30.0%
CATTGGAGATGCAATTAATT+AGG	-	Chr4:35576837-35576856	MsG0480020173.01.T01:intron	30.0%
CTAATTAATTGCATCTCCAA+TGG	+	Chr4:35576839-35576858	None:intergenic	30.0%
TATACTTATTTCCATGTCGA+TGG	+	Chr4:35576566-35576585	None:intergenic	30.0%
TTCACTTGATATCTCATTAG+TGG	+	Chr4:35577495-35577514	None:intergenic	30.0%
AACATTGTCTTCTGCCATTA+TGG	+	Chr4:35577399-35577418	None:intergenic	35.0%
ACATTGTCTTCTGCCATTAT+GGG	+	Chr4:35577398-35577417	None:intergenic	35.0%
ACCACGAGATAAAGAACTAT+TGG	-	Chr4:35577138-35577157	MsG0480020173.01.T01:intron	35.0%
ACTTGATATCTCATTAGTGG+TGG	+	Chr4:35577492-35577511	None:intergenic	35.0%
AGTATCGTTAATCAGTGTCT+TGG	+	Chr4:35576180-35576199	None:intergenic	35.0%

Showing 1 to 10 of 88 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	35575908	35577565	35575908	ID=MsG0480020173.01;Name=MsG0480020173.01
Chr4	mRNA	35575908	35577565	35575908	ID=MsG0480020173.01.T01;Parent=MsG0480020173.01;Name=MsG0480020173.01.T01;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|3\|0\|242
Chr4	exon	35577433	35577565	35577433	ID=MsG0480020173.01.T01:exon:4488;Parent=MsG0480020173.01.T01
Chr4	exon	35576893	35577022	35576893	ID=MsG0480020173.01.T01:exon:4489;Parent=MsG0480020173.01.T01
Chr4	exon	35575908	35576373	35575908	ID=MsG0480020173.01.T01:exon:4490;Parent=MsG0480020173.01.T01
Chr4	CDS	35577433	35577565	35577433	ID=MsG0480020173.01.T01:cds;Parent=MsG0480020173.01.T01
Chr4	CDS	35576893	35577022	35576893	ID=MsG0480020173.01.T01:cds;Parent=MsG0480020173.01.T01
Chr4	CDS	35575908	35576373	35575908	ID=MsG0480020173.01.T01:cds;Parent=MsG0480020173.01.T01

Gene Sequence

>MsG0480020173.01.T01

ATGGTAAGAGCTCCTTTCTATGACAAAAATGGTGTTAAGAAAGGTGCATGGAGTAGAGATGAGGATACAAGGTTAAGTGATTATATTCAGAAACATGGTCATTCTAATTGGCGTCAACTCCCCAAGCTTGCAGGTTTAGCAAGATGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTAAAGCCAAATCTTAAACATGGGAACTACACAAGCGAAGAAGAAGAAATTATCATCAAATTACACCATCGACATGGAAATAAATGGTCATTGATTGCTGAAAAACTGCCTGGAAAAACGGACCACGAGATAAAGAACTATTGGCATAGTTACCTAAAAAAATGTTCAAAGAGCAAAGACTACAAGGACACAATTTCTGAGTTGATATATAAACCATGTGATACTGTTGAAGAAAATGACACTGATCATTTTGTAACACCTGAAATCCCTATCTCTGATGTTGATAAGGACTTTCATTATATTTTAGAAAGCTCAACAATAACCCTTTCCAGAGAAACATCAGTGGAAGATAAATCTTTAACTGCCTCCATCAACTGCCCCATAATGGCAGAAGACAATGTTGCTCCATGGTTAGTTTTTGAATCATTTAGTGGAGATTTTTGGACTGATCCATGCACCCTAGAAGATACCTCCACCACTAATGAGATATCAAGTGAAGACATAGACTTCTTGATTCCAGACTTCTATGATGGTTCATATATGTTTTAG

Protein sequence

>MsG0480020173.01.T01

MVRAPFYDKNGVKKGAWSRDEDTRLSDYIQKHGHSNWRQLPKLAGLARCGKSCRLRWLNYLKPNLKHGNYTSEEEEIIIKLHHRHGNKWSLIAEKLPGKTDHEIKNYWHSYLKKCSKSKDYKDTISELIYKPCDTVEENDTDHFVTPEIPISDVDKDFHYILESSTITLSRETSVEDKSLTASINCPIMAEDNVAPWLVFESFSGDFWTDPCTLEDTSTTNEISSEDIDFLIPDFYDGSYMF*