AlfalfaGEDB | MsG0480020867.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020867.01

KEGG: -
GO: GO:0003677
PFAM: PF02362

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020867.01.T01	XP_024637264.1	92.405	79	6	0	29	107	86	164	7.92E-48	160

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020867.01.T01	G7JQ00	92.405	79	6	0	29	107	146	224	2.08e-47	160

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TFs/TRs:

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Gene ID	Type	Classification
MsG0480020867.01.T01	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020867.01.T01	MTR_4g123470	92.405	79	6	0	29	107	146	224	5.29e-51	160
MsG0480020867.01.T01	MTR_7g113060	86.842	38	5	0	69	106	2	39	7.73e-18	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 24 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTAGTGGTAAAATTTG+GGG	0.519564	4:-49870421	None:intergenic
AATCGTGATGTTTCACTCTA+AGG	0.342040	4:-49871380	None:intergenic
ACAGGAATGATATTGTCATA+AGG	0.528831	4:-49871420	None:intergenic
ACCTTAGTGGTAAAATTTGG+GGG	0.592838	4:-49870420	None:intergenic
AGGAATTTGCCAAAAGTATG+AGG	0.497368	4:-49871360	None:intergenic
ATGTGATGTTCGGAAAAGGT+TGG	0.606400	4:+49871475	MsG0480020867.01.T01:CDS
CACAGTGCATGTACAAAATC+AGG	0.330296	4:+49870458	MsG0480020867.01.T01:CDS
CACGATTACCTAATGTTGTG+CGG	0.637450	4:+49871396	MsG0480020867.01.T01:CDS
CATAAGGTCCGCACAACATT+AGG	0.337570	4:-49871404	None:intergenic
CCAAATGTGATGTTCGGAAA+AGG	0.475440	4:+49871471	MsG0480020867.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCTTAGTGGTAAAATTTG+GGG	-	Chr4:49870424-49870443	None:intergenic	30.0%
ACAGGAATGATATTGTCATA+AGG	-	Chr4:49871423-49871442	None:intergenic	30.0%
AGTTAGGCAGAAAAAGTTTA+CGG	-	Chr4:49870537-49870556	None:intergenic	30.0%
TGTTCAACAAATCAGTTAGT+CGG	+	Chr4:49870662-49870681	MsG0480020867.01.T01:intron	30.0%
AATCGTGATGTTTCACTCTA+AGG	-	Chr4:49871383-49871402	None:intergenic	35.0%
ACCTTAGTGGTAAAATTTGG+GGG	-	Chr4:49870423-49870442	None:intergenic	35.0%
ATTATTGCTTTCCAGTACCT+TGG	+	Chr4:49870745-49870764	MsG0480020867.01.T01:intron	35.0%
CTGCCTAACTTATATGATGT+CGG	+	Chr4:49870547-49870566	MsG0480020867.01.T01:intron	35.0%
GAACGAACATTTAACCTTAG+TGG	-	Chr4:49870436-49870455	None:intergenic	35.0%
TCAGCTAGAGTAATGTTATG+AGG	-	Chr4:49870799-49870818	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	49870399	49871599	49870399	ID=MsG0480020867.01;Name=MsG0480020867.01
Chr4	mRNA	49870399	49871599	49870399	ID=MsG0480020867.01.T01;Parent=MsG0480020867.01;Name=MsG0480020867.01.T01;_AED=0.61;_eAED=0.61;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|108
Chr4	exon	49870399	49870479	49870399	ID=MsG0480020867.01.T01:exon:258;Parent=MsG0480020867.01.T01
Chr4	exon	49871354	49871599	49871354	ID=MsG0480020867.01.T01:exon:259;Parent=MsG0480020867.01.T01
Chr4	CDS	49870399	49870479	49870399	ID=MsG0480020867.01.T01:cds;Parent=MsG0480020867.01.T01
Chr4	CDS	49871354	49871599	49871354	ID=MsG0480020867.01.T01:cds;Parent=MsG0480020867.01.T01

Gene Sequence	>MsG0480020867.01.T01 ATGCGTTTTAAGGTGAAGTTTCCCCCAAATTTTACCACTAAGGTTAAATGTTCGTTCTTCACAGTGCATGTACAAAATCAGGGACTACCTCATACTTTTGGCAAATTCCTTAGAGTGAAACATCACGATTACCTAATGTTGTGCGGACCTTATGACAATATCATTCCTGTGAGACTCAAATATACAGACGACCCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCATGGACAAAAAATATGTTATCGTATCCAAGTGTTAA
Protein sequence	>MsG0480020867.01.T01 MRFKVKFPPNFTTKVKCSFFTVHVQNQGLPHTFGKFLRVKHHDYLMLCGPYDNIIPVRLKYTDDPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVMDKKYVIVSKC*