Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021324.01.T01 | XP_003607047.1 | 96.959 | 296 | 8 | 1 | 1 | 296 | 1 | 295 | 0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021324.01.T01 | O65515 | 47.082 | 257 | 90 | 10 | 40 | 282 | 10 | 234 | 1.38E-55 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021324.01.T01 | G7JJU1 | 96.959 | 296 | 8 | 1 | 1 | 296 | 1 | 295 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480021324.01.T01 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021324.01.T01 | MTR_4g071590 | 96.959 | 296 | 8 | 1 | 1 | 296 | 1 | 295 | 0.0 | 596 |
| MsG0480021324.01.T01 | MTR_4g471590 | 96.959 | 296 | 8 | 1 | 1 | 296 | 1 | 295 | 0.0 | 596 |
| MsG0480021324.01.T01 | MTR_3g117380 | 53.292 | 319 | 107 | 8 | 1 | 296 | 15 | 314 | 3.51e-97 | 289 |
| MsG0480021324.01.T01 | MTR_8g076340 | 39.159 | 309 | 138 | 10 | 1 | 281 | 1 | 287 | 1.20e-51 | 171 |
| MsG0480021324.01.T01 | MTR_5g021340 | 40.282 | 355 | 137 | 11 | 1 | 296 | 51 | 389 | 3.55e-50 | 171 |
| MsG0480021324.01.T01 | MTR_3g109760 | 38.406 | 276 | 120 | 9 | 36 | 281 | 21 | 276 | 4.69e-45 | 155 |
| MsG0480021324.01.T01 | MTR_8g013950 | 38.869 | 283 | 113 | 9 | 39 | 281 | 33 | 295 | 2.98e-43 | 151 |
| MsG0480021324.01.T01 | MTR_1g006650 | 34.921 | 315 | 141 | 12 | 15 | 281 | 5 | 303 | 1.43e-42 | 149 |
| MsG0480021324.01.T01 | MTR_1g094930 | 75.714 | 70 | 17 | 0 | 207 | 276 | 142 | 211 | 5.83e-35 | 126 |
| MsG0480021324.01.T01 | MTR_1g094930 | 75.714 | 70 | 17 | 0 | 207 | 276 | 237 | 306 | 1.75e-34 | 128 |
| MsG0480021324.01.T01 | MTR_6g032830 | 81.538 | 65 | 12 | 0 | 212 | 276 | 192 | 256 | 2.74e-34 | 125 |
| MsG0480021324.01.T01 | MTR_7g085410 | 80.000 | 65 | 13 | 0 | 212 | 276 | 188 | 252 | 2.95e-33 | 123 |
| MsG0480021324.01.T01 | MTR_1g116010 | 67.532 | 77 | 25 | 0 | 212 | 288 | 164 | 240 | 4.76e-33 | 122 |
| MsG0480021324.01.T01 | MTR_1g046680 | 76.471 | 68 | 16 | 0 | 212 | 279 | 172 | 239 | 1.08e-32 | 121 |
| MsG0480021324.01.T01 | MTR_2g094600 | 62.791 | 86 | 30 | 1 | 191 | 276 | 197 | 280 | 3.34e-32 | 121 |
| MsG0480021324.01.T01 | MTR_4g058910 | 73.134 | 67 | 18 | 0 | 212 | 278 | 314 | 380 | 1.63e-31 | 121 |
| MsG0480021324.01.T01 | MTR_5g007600 | 68.571 | 70 | 22 | 0 | 212 | 281 | 259 | 328 | 1.25e-29 | 115 |
| MsG0480021324.01.T01 | MTR_5g007600 | 59.036 | 83 | 28 | 1 | 199 | 275 | 138 | 220 | 2.74e-26 | 106 |
| MsG0480021324.01.T01 | MTR_7g446110 | 57.143 | 63 | 27 | 0 | 211 | 273 | 186 | 248 | 2.26e-20 | 88.6 |
| MsG0480021324.01.T01 | MTR_7g445950 | 30.128 | 156 | 105 | 1 | 118 | 273 | 30 | 181 | 2.56e-20 | 86.7 |
| MsG0480021324.01.T01 | MTR_7g445980 | 51.316 | 76 | 36 | 1 | 199 | 273 | 20 | 95 | 3.07e-19 | 81.3 |
| MsG0480021324.01.T01 | MTR_7g446070 | 31.868 | 182 | 107 | 5 | 105 | 273 | 16 | 193 | 6.51e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021324.01.T01 | AT4G36240 | 47.082 | 257 | 90 | 10 | 40 | 282 | 10 | 234 | 1.40e-56 | 182 |
| MsG0480021324.01.T01 | AT5G66320 | 35.838 | 346 | 139 | 10 | 8 | 291 | 5 | 329 | 2.41e-51 | 172 |
| MsG0480021324.01.T01 | AT5G66320 | 35.838 | 346 | 139 | 10 | 8 | 291 | 5 | 329 | 2.41e-51 | 172 |
| MsG0480021324.01.T01 | AT4G34680 | 41.034 | 290 | 114 | 11 | 6 | 283 | 7 | 251 | 2.03e-49 | 165 |
| MsG0480021324.01.T01 | AT4G34680 | 41.034 | 290 | 114 | 11 | 6 | 283 | 7 | 251 | 2.03e-49 | 165 |
| MsG0480021324.01.T01 | AT5G25830 | 38.047 | 297 | 108 | 12 | 40 | 281 | 13 | 288 | 1.49e-44 | 154 |
| MsG0480021324.01.T01 | AT3G60530 | 47.778 | 180 | 73 | 5 | 112 | 283 | 63 | 229 | 2.33e-43 | 149 |
| MsG0480021324.01.T01 | AT4G32890 | 36.331 | 278 | 115 | 11 | 39 | 281 | 16 | 266 | 4.84e-43 | 150 |
| MsG0480021324.01.T01 | AT2G45050 | 44.845 | 194 | 73 | 4 | 112 | 281 | 65 | 248 | 5.01e-43 | 148 |
| MsG0480021324.01.T01 | AT3G51080 | 69.231 | 91 | 22 | 2 | 212 | 296 | 221 | 311 | 2.52e-38 | 137 |
| MsG0480021324.01.T01 | AT3G24050 | 64.706 | 85 | 29 | 1 | 197 | 280 | 178 | 262 | 1.05e-33 | 124 |
| MsG0480021324.01.T01 | AT3G54810 | 75.000 | 68 | 17 | 0 | 212 | 279 | 229 | 296 | 3.81e-33 | 124 |
| MsG0480021324.01.T01 | AT3G54810 | 75.000 | 68 | 17 | 0 | 212 | 279 | 229 | 296 | 3.81e-33 | 124 |
| MsG0480021324.01.T01 | AT1G08010 | 72.464 | 69 | 19 | 0 | 212 | 280 | 220 | 288 | 3.59e-32 | 121 |
| MsG0480021324.01.T01 | AT1G08010 | 72.464 | 69 | 19 | 0 | 212 | 280 | 220 | 288 | 3.59e-32 | 121 |
| MsG0480021324.01.T01 | AT1G08010 | 72.464 | 69 | 19 | 0 | 212 | 280 | 220 | 288 | 3.59e-32 | 121 |
| MsG0480021324.01.T01 | AT1G08000 | 71.014 | 69 | 20 | 0 | 212 | 280 | 218 | 286 | 2.77e-30 | 116 |
| MsG0480021324.01.T01 | AT1G08000 | 71.014 | 69 | 20 | 0 | 212 | 280 | 218 | 286 | 2.77e-30 | 116 |
| MsG0480021324.01.T01 | AT3G45170 | 60.274 | 73 | 29 | 0 | 214 | 286 | 117 | 189 | 9.60e-27 | 104 |
| MsG0480021324.01.T01 | AT2G28340 | 63.077 | 65 | 24 | 0 | 214 | 278 | 193 | 257 | 1.64e-24 | 100 |
Find 107 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAACTGCACTGAGAAAA+TGG | 0.161694 | 4:-56710423 | None:intergenic |
| CTTCTTGTCTTGGTTGTTCT+AGG | 0.195513 | 4:-56709854 | None:intergenic |
| AGCCCCACCCGTTTGGGCTT+CGG | 0.226880 | 4:-56709942 | None:intergenic |
| GCCCCACCCGTTTGGGCTTC+GGG | 0.232140 | 4:-56709941 | None:intergenic |
| GGCCGATGATGTTGCGGATT+TGG | 0.241470 | 4:+56709697 | MsG0480021324.01.T01:intron |
| TAAATACCAACTTGAATAAA+TGG | 0.261771 | 4:-56710521 | None:intergenic |
| GAACAGCCACCGTAAGGTTT+TGG | 0.270098 | 4:+56710138 | MsG0480021324.01.T01:CDS |
| GAGGTGGATGAACCGGTTTC+CGG | 0.310815 | 4:+56710178 | MsG0480021324.01.T01:CDS |
| GGTTCGGCCCGGGCCTGAAC+TGG | 0.312951 | 4:-56709773 | None:intergenic |
| TGCCGGTGGTTTAGCAGTTC+CGG | 0.331211 | 4:+56709418 | MsG0480021324.01.T01:CDS |
| GAAACTGAGCCCCACCCGTT+TGG | 0.331959 | 4:-56709949 | None:intergenic |
| TCTCTTCACAAATTGTTTGT+TGG | 0.346081 | 4:-56709139 | None:intergenic |
| AAACTGAGCCCCACCCGTTT+GGG | 0.350163 | 4:-56709948 | None:intergenic |
| TCTTTGCTGAAAAGAGTATA+GGG | 0.351726 | 4:-56709904 | None:intergenic |
| CTTCTTCTTCTTCCTCCTCC+TGG | 0.352825 | 4:-56709280 | None:intergenic |
| GTGAACCAACTGGTCTGAAC+CGG | 0.355460 | 4:+56710294 | MsG0480021324.01.T01:three_prime_UTR |
| CTCTCTATTGTATCCAGTTC+AGG | 0.364580 | 4:+56709760 | MsG0480021324.01.T01:CDS |
| AACCGGTTTCCGGTCTGAAC+CGG | 0.370991 | 4:+56710188 | MsG0480021324.01.T01:CDS |
| GCATTGGTTGGGCCCGGTCT+AGG | 0.372639 | 4:-56709800 | None:intergenic |
| ACAGTTGGGCCTTCTTGTCT+TGG | 0.379924 | 4:-56709864 | None:intergenic |
| GTTGGGCCCGGTCTAGGTTC+CGG | 0.399228 | 4:-56709794 | None:intergenic |
| TAAGGCAGGTAACGGAGATT+AGG | 0.403308 | 4:+56710370 | MsG0480021324.01.T01:three_prime_UTR |
| TAGATTAGCTGATTAGATAC+TGG | 0.405597 | 4:+56710272 | MsG0480021324.01.T01:three_prime_UTR |
| AGTTCAGGCCCGGGCCGAAC+CGG | 0.407384 | 4:+56709775 | MsG0480021324.01.T01:CDS |
| GTCTAGGTTCCGGTTCGGCC+CGG | 0.414385 | 4:-56709784 | None:intergenic |
| GGCCGAACCGGAACCTAGAC+CGG | 0.414860 | 4:+56709787 | MsG0480021324.01.T01:CDS |
| TTCTTTGCTGAAAAGAGTAT+AGG | 0.416988 | 4:-56709905 | None:intergenic |
| AACGCAAACAACGTTGTTGT+CGG | 0.417578 | 4:+56709173 | MsG0480021324.01.T01:CDS |
| TTTGGAAATGAGGCGGAGGA+AGG | 0.432787 | 4:+56710156 | MsG0480021324.01.T01:CDS |
| TATGTAACGCTTGTGGTGTT+CGG | 0.433641 | 4:+56710044 | MsG0480021324.01.T01:CDS |
| AGAAATAGTCAATGATTTAG+TGG | 0.433775 | 4:+56710328 | MsG0480021324.01.T01:three_prime_UTR |
| GAATTTCACCGGAAAACGTC+GGG | 0.435549 | 4:-56710111 | None:intergenic |
| GAATTTCAACATGGTTCTGT+TGG | 0.444517 | 4:+56709239 | MsG0480021324.01.T01:CDS |
| TATTGTATCCAGTTCAGGCC+CGG | 0.446736 | 4:+56709765 | MsG0480021324.01.T01:CDS |
| GGAATGGGTGTCTCACTTTG+TGG | 0.449579 | 4:+56709718 | MsG0480021324.01.T01:CDS |
| AATGAGGCGGAGGAAGGAGG+TGG | 0.451531 | 4:+56710162 | MsG0480021324.01.T01:CDS |
| ATCCGGTTCAGACCGGAAAC+CGG | 0.452815 | 4:-56710190 | None:intergenic |
| GAGGAAGGAGGTGGATGAAC+CGG | 0.452883 | 4:+56710171 | MsG0480021324.01.T01:CDS |
| TCTAGGTTCCGGTTCGGCCC+GGG | 0.468440 | 4:-56709783 | None:intergenic |
| ATAGATTCTGTCCTCAAGCT+TGG | 0.468461 | 4:-56709113 | None:intergenic |
| GCCTCATTTCCAAAACCTTA+CGG | 0.469337 | 4:-56710147 | None:intergenic |
| TTAGATACTGGTGAACCAAC+TGG | 0.470608 | 4:+56710284 | MsG0480021324.01.T01:three_prime_UTR |
| ATTAACTGCACTGAGAAAAT+GGG | 0.471694 | 4:-56710422 | None:intergenic |
| TTCTGCGGATTATAGAGAGC+TGG | 0.472534 | 4:-56709829 | None:intergenic |
| TCTTCGCCATTTATTCAAGT+TGG | 0.475612 | 4:+56710515 | MsG0480021324.01.T01:three_prime_UTR |
| CGGTCTGAACCGGATTCAAA+TGG | 0.475660 | 4:+56710198 | MsG0480021324.01.T01:CDS |
| ATGATGTTGCGGATTTGGAA+TGG | 0.479723 | 4:+56709702 | MsG0480021324.01.T01:CDS |
| AACTCGTGACCATTTGAATC+CGG | 0.481371 | 4:-56710207 | None:intergenic |
| CAGTGGAGAGCTGGTCCGCT+TGG | 0.483307 | 4:+56710010 | MsG0480021324.01.T01:CDS |
| GGAGTCAGACTCGCCGTCTC+CGG | 0.485968 | 4:-56709390 | None:intergenic |
| TGTGGTGTTCGGTTTAAGTC+CGG | 0.492368 | 4:+56710055 | MsG0480021324.01.T01:CDS |
| GGATACAATAGAGAGAGTTC+TGG | 0.493646 | 4:-56709752 | None:intergenic |
| GCCCGAAGCCCAAACGGGTG+GGG | 0.493923 | 4:+56709940 | MsG0480021324.01.T01:CDS |
| AAAATCCACACGTTACAGTT+GGG | 0.498357 | 4:-56709878 | None:intergenic |
| TGATGTTGCGGATTTGGAAT+GGG | 0.501793 | 4:+56709703 | MsG0480021324.01.T01:CDS |
| GGAAATGAGGCGGAGGAAGG+AGG | 0.505698 | 4:+56710159 | MsG0480021324.01.T01:CDS |
| GCCCGGTCTAGGTTCCGGTT+CGG | 0.510484 | 4:-56709789 | None:intergenic |
| AGACTCGCCGTCTCCGGCAC+CGG | 0.510633 | 4:-56709384 | None:intergenic |
| AGCTGGGAATAAGCATTGGT+TGG | 0.510903 | 4:-56709812 | None:intergenic |
| TTCTCAGGCCGATGATGTTG+CGG | 0.519029 | 4:+56709691 | MsG0480021324.01.T01:intron |
| AAAAGAAATTGATGTTTACC+AGG | 0.530934 | 4:+56709262 | MsG0480021324.01.T01:CDS |
| GCTGGGAATAAGCATTGGTT+GGG | 0.531676 | 4:-56709811 | None:intergenic |
| GAAAACGTCGGGCTGCATGC+AGG | 0.532133 | 4:-56710100 | None:intergenic |
| AAAACGCCACAGTGGAGAGC+TGG | 0.532352 | 4:+56710001 | MsG0480021324.01.T01:CDS |
| AATTGATGTTTACCAGGAGG+AGG | 0.533216 | 4:+56709268 | MsG0480021324.01.T01:CDS |
| TTCCAAATCCGCAACATCAT+CGG | 0.540001 | 4:-56709699 | None:intergenic |
| AGCCCGAAGCCCAAACGGGT+GGG | 0.541657 | 4:+56709939 | MsG0480021324.01.T01:CDS |
| GAATAAGCATTGGTTGGGCC+CGG | 0.542060 | 4:-56709806 | None:intergenic |
| GTGATAGTGGTAACTTGGTA+AGG | 0.542565 | 4:+56710248 | MsG0480021324.01.T01:three_prime_UTR |
| ATTGTATCCAGTTCAGGCCC+GGG | 0.543140 | 4:+56709766 | MsG0480021324.01.T01:CDS |
| CTGCATGCAGGTCTATACTC+AGG | 0.544535 | 4:-56710088 | None:intergenic |
| AGAACGTGATAGTGGTAACT+TGG | 0.546604 | 4:+56710243 | MsG0480021324.01.T01:three_prime_UTR |
| AGAGAGCTGGGAATAAGCAT+TGG | 0.549150 | 4:-56709816 | None:intergenic |
| TGAACCAACTGGTCTGAACC+GGG | 0.550403 | 4:+56710295 | MsG0480021324.01.T01:three_prime_UTR |
| GCCGAACCGGAACCTAGACC+GGG | 0.552879 | 4:+56709788 | MsG0480021324.01.T01:CDS |
| TCTGCGGATTATAGAGAGCT+GGG | 0.553907 | 4:-56709828 | None:intergenic |
| ATTTGTTGAGAACGTGATAG+TGG | 0.554949 | 4:+56710235 | MsG0480021324.01.T01:three_prime_UTR |
| CATTTGAATCCGGTTCAGAC+CGG | 0.555998 | 4:-56710197 | None:intergenic |
| GCTGTTCGAATGAATTTCAC+CGG | 0.556294 | 4:-56710122 | None:intergenic |
| AAGCCCGAAGCCCAAACGGG+TGG | 0.557944 | 4:+56709938 | MsG0480021324.01.T01:CDS |
| TCCGGCACCGGAAAATGTTG+TGG | 0.574032 | 4:-56709372 | None:intergenic |
| TCATTCGAACAGCCACCGTA+AGG | 0.576237 | 4:+56710132 | MsG0480021324.01.T01:CDS |
| AGTGACTAGTCAGCTAAGGC+AGG | 0.578356 | 4:+56710356 | MsG0480021324.01.T01:three_prime_UTR |
| AGTGAGTGACTAGTCAGCTA+AGG | 0.581255 | 4:+56710352 | MsG0480021324.01.T01:three_prime_UTR |
| ATACTCAGGGAAAAGCCGAC+CGG | 0.581357 | 4:-56710074 | None:intergenic |
| CTAGAACAACCAAGACAAGA+AGG | 0.581886 | 4:+56709855 | MsG0480021324.01.T01:CDS |
| ACCATGTTGAAATTCACCGT+TGG | 0.582797 | 4:-56709231 | None:intergenic |
| CTATACTAGAATATAAGTCT+AGG | 0.584044 | 4:+56710468 | MsG0480021324.01.T01:three_prime_UTR |
| CACCGGAACTGCTAAACCAC+CGG | 0.593758 | 4:-56709420 | None:intergenic |
| AAAACCCGGTTCAGACCAGT+TGG | 0.597362 | 4:-56710299 | None:intergenic |
| TGGTTGTTCTAGGCTTTCTG+CGG | 0.603627 | 4:-56709844 | None:intergenic |
| TAGTCAGCTAAGGCAGGTAA+CGG | 0.605189 | 4:+56710362 | MsG0480021324.01.T01:three_prime_UTR |
| TGAATTTCACCGGAAAACGT+CGG | 0.605768 | 4:-56710112 | None:intergenic |
| AAACATGGAAGTTGTTGTAG+CGG | 0.614309 | 4:+56709079 | MsG0480021324.01.T01:exon |
| TGCATGCAGGTCTATACTCA+GGG | 0.615040 | 4:-56710087 | None:intergenic |
| TCGTTCATGTTCAGAACCTG+AGG | 0.628083 | 4:-56709324 | None:intergenic |
| TTCATGTTCAGAACCTGAGG+TGG | 0.629594 | 4:-56709321 | None:intergenic |
| GTGTTCGGTTTAAGTCCGGT+CGG | 0.631814 | 4:+56710059 | MsG0480021324.01.T01:CDS |
| TCCAACGGTGAATTTCAACA+TGG | 0.652718 | 4:+56709230 | MsG0480021324.01.T01:CDS |
| GAAGGCCCAACTGTAACGTG+TGG | 0.654146 | 4:+56709873 | MsG0480021324.01.T01:CDS |
| AAAACACTATGTAACGCTTG+TGG | 0.656575 | 4:+56710037 | MsG0480021324.01.T01:CDS |
| AGAAATTGATGTTTACCAGG+AGG | 0.667546 | 4:+56709265 | MsG0480021324.01.T01:CDS |
| AAGCGTTGAAACCAAGCTTG+AGG | 0.681951 | 4:+56709102 | MsG0480021324.01.T01:CDS |
| TCATTTCCAAAACCTTACGG+TGG | 0.687073 | 4:-56710144 | None:intergenic |
| AGCGGACCAGCTCTCCACTG+TGG | 0.697012 | 4:-56710007 | None:intergenic |
| ATGTTCAGAAAACGCCACAG+TGG | 0.715931 | 4:+56709993 | MsG0480021324.01.T01:CDS |
| GTGGGGCTCAGTTTCAACGA+CGG | 0.724625 | 4:+56709957 | MsG0480021324.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACCAACTTGAATAAA+TGG | - | Chr4:56710524-56710543 | None:intergenic | 20.0% |
| !!! | AATAATAGTTTGAGTTTTGT+AGG | + | Chr4:56709048-56709067 | MsG0480021324.01.T01:five_prime_UTR | 20.0% |
| ! | AAAAGAAATTGATGTTTACC+AGG | + | Chr4:56709262-56709281 | MsG0480021324.01.T01:CDS | 25.0% |
| ! | AGAAATAGTCAATGATTTAG+TGG | + | Chr4:56710328-56710347 | MsG0480021324.01.T01:three_prime_UTR | 25.0% |
| ! | CTATACTAGAATATAAGTCT+AGG | + | Chr4:56710468-56710487 | MsG0480021324.01.T01:three_prime_UTR | 25.0% |
| ! | TTGTAGGAGAAAAAAAAACA+TGG | + | Chr4:56709064-56709083 | MsG0480021324.01.T01:exon | 25.0% |
| !! | ATATAGCTAATAACTCGTTT+TGG | + | Chr4:56709659-56709678 | MsG0480021324.01.T01:intron | 25.0% |
| !!! | TTTTGGTTTTCTTAATTCTC+AGG | + | Chr4:56709676-56709695 | MsG0480021324.01.T01:intron | 25.0% |
| AATTAACTGCACTGAGAAAA+TGG | - | Chr4:56710426-56710445 | None:intergenic | 30.0% | |
| AATTCATTACCTTTGTAGCA+TGG | + | Chr4:56709493-56709512 | MsG0480021324.01.T01:intron | 30.0% | |
| ATTAACTGCACTGAGAAAAT+GGG | - | Chr4:56710425-56710444 | None:intergenic | 30.0% | |
| TCTCTTCACAAATTGTTTGT+TGG | - | Chr4:56709142-56709161 | None:intergenic | 30.0% | |
| ! | CTATTTCTCCAAAAAAAACC+CGG | - | Chr4:56710316-56710335 | None:intergenic | 30.0% |
| ! | TAGATTAGCTGATTAGATAC+TGG | + | Chr4:56710272-56710291 | MsG0480021324.01.T01:three_prime_UTR | 30.0% |
| ! | TCAAATTCCACAACATTTTC+CGG | + | Chr4:56709365-56709384 | MsG0480021324.01.T01:CDS | 30.0% |
| ! | TCTTTGCTGAAAAGAGTATA+GGG | - | Chr4:56709907-56709926 | None:intergenic | 30.0% |
| ! | TTCTTTGCTGAAAAGAGTAT+AGG | - | Chr4:56709908-56709927 | None:intergenic | 30.0% |
| AAAAATCCACACGTTACAGT+TGG | - | Chr4:56709882-56709901 | None:intergenic | 35.0% | |
| AAAACACTATGTAACGCTTG+TGG | + | Chr4:56710037-56710056 | MsG0480021324.01.T01:CDS | 35.0% | |
| AAAATCCACACGTTACAGTT+GGG | - | Chr4:56709881-56709900 | None:intergenic | 35.0% | |
| AAACATGGAAGTTGTTGTAG+CGG | + | Chr4:56709079-56709098 | MsG0480021324.01.T01:exon | 35.0% | |
| AGAAATTGATGTTTACCAGG+AGG | + | Chr4:56709265-56709284 | MsG0480021324.01.T01:CDS | 35.0% | |
| ATTGCAGATTAAAGACTCAC+CGG | - | Chr4:56709440-56709459 | None:intergenic | 35.0% | |
| TATCACTAGTATCATGTGTC+CGG | + | Chr4:56709603-56709622 | MsG0480021324.01.T01:intron | 35.0% | |
| TCTTCGCCATTTATTCAAGT+TGG | + | Chr4:56710515-56710534 | MsG0480021324.01.T01:three_prime_UTR | 35.0% | |
| ! | ATTTGTTGAGAACGTGATAG+TGG | + | Chr4:56710235-56710254 | MsG0480021324.01.T01:three_prime_UTR | 35.0% |
| ! | CAAGCGTTACATAGTGTTTT+CGG | - | Chr4:56710037-56710056 | None:intergenic | 35.0% |
| ! | GAATTTCAACATGGTTCTGT+TGG | + | Chr4:56709239-56709258 | MsG0480021324.01.T01:CDS | 35.0% |
| ! | TCTTTTCAGCAAAGAAACAG+AGG | + | Chr4:56709912-56709931 | MsG0480021324.01.T01:CDS | 35.0% |
| !! | GACTTGCTTGATTTTTCCAA+CGG | + | Chr4:56709215-56709234 | MsG0480021324.01.T01:CDS | 35.0% |
| AACGCAAACAACGTTGTTGT+CGG | + | Chr4:56709173-56709192 | MsG0480021324.01.T01:CDS | 40.0% | |
| AACTCGTGACCATTTGAATC+CGG | - | Chr4:56710210-56710229 | None:intergenic | 40.0% | |
| AATTGATGTTTACCAGGAGG+AGG | + | Chr4:56709268-56709287 | MsG0480021324.01.T01:CDS | 40.0% | |
| ACCATGTTGAAATTCACCGT+TGG | - | Chr4:56709234-56709253 | None:intergenic | 40.0% | |
| ATAGATTCTGTCCTCAAGCT+TGG | - | Chr4:56709116-56709135 | None:intergenic | 40.0% | |
| ATGATGTTGCGGATTTGGAA+TGG | + | Chr4:56709702-56709721 | MsG0480021324.01.T01:CDS | 40.0% | |
| CAGAAATGTCCATGCTACAA+AGG | - | Chr4:56709505-56709524 | None:intergenic | 40.0% | |
| CTAGAACAACCAAGACAAGA+AGG | + | Chr4:56709855-56709874 | MsG0480021324.01.T01:CDS | 40.0% | |
| CTCTCTATTGTATCCAGTTC+AGG | + | Chr4:56709760-56709779 | MsG0480021324.01.T01:CDS | 40.0% | |
| CTTCTTGTCTTGGTTGTTCT+AGG | - | Chr4:56709857-56709876 | None:intergenic | 40.0% | |
| GCCTCATTTCCAAAACCTTA+CGG | - | Chr4:56710150-56710169 | None:intergenic | 40.0% | |
| GCTGTTCGAATGAATTTCAC+CGG | - | Chr4:56710125-56710144 | None:intergenic | 40.0% | |
| GGATACAATAGAGAGAGTTC+TGG | - | Chr4:56709755-56709774 | None:intergenic | 40.0% | |
| TATGTAACGCTTGTGGTGTT+CGG | + | Chr4:56710044-56710063 | MsG0480021324.01.T01:CDS | 40.0% | |
| TCATTTCCAAAACCTTACGG+TGG | - | Chr4:56710147-56710166 | None:intergenic | 40.0% | |
| TCCAACGGTGAATTTCAACA+TGG | + | Chr4:56709230-56709249 | MsG0480021324.01.T01:CDS | 40.0% | |
| TGAATTTCACCGGAAAACGT+CGG | - | Chr4:56710115-56710134 | None:intergenic | 40.0% | |
| TTAGATACTGGTGAACCAAC+TGG | + | Chr4:56710284-56710303 | MsG0480021324.01.T01:three_prime_UTR | 40.0% | |
| TTCCAAATCCGCAACATCAT+CGG | - | Chr4:56709702-56709721 | None:intergenic | 40.0% | |
| ! | TGATGTTGCGGATTTGGAAT+GGG | + | Chr4:56709703-56709722 | MsG0480021324.01.T01:CDS | 40.0% |
| !! | AGAACGTGATAGTGGTAACT+TGG | + | Chr4:56710243-56710262 | MsG0480021324.01.T01:three_prime_UTR | 40.0% |
| !! | GTGATAGTGGTAACTTGGTA+AGG | + | Chr4:56710248-56710267 | MsG0480021324.01.T01:three_prime_UTR | 40.0% |
| !!! | ACCGTAAGGTTTTGGAAATG+AGG | + | Chr4:56710146-56710165 | MsG0480021324.01.T01:CDS | 40.0% |
| !!! | GTAAGGTTTTGGAAATGAGG+CGG | + | Chr4:56710149-56710168 | MsG0480021324.01.T01:CDS | 40.0% |
| ACTAGTATCATGTGTCCGGT+CGG | + | Chr4:56709607-56709626 | MsG0480021324.01.T01:intron | 45.0% | |
| AGAGAGCTGGGAATAAGCAT+TGG | - | Chr4:56709819-56709838 | None:intergenic | 45.0% | |
| ATGTTCAGAAAACGCCACAG+TGG | + | Chr4:56709993-56710012 | MsG0480021324.01.T01:CDS | 45.0% | |
| CATTTGAATCCGGTTCAGAC+CGG | - | Chr4:56710200-56710219 | None:intergenic | 45.0% | |
| GAAAAAAACAGCACCACCTC+AGG | + | Chr4:56709308-56709327 | MsG0480021324.01.T01:CDS | 45.0% | |
| GAATTTCACCGGAAAACGTC+GGG | - | Chr4:56710114-56710133 | None:intergenic | 45.0% | |
| GTCGTGTTAGTGACATGTGT+GGG | - | Chr4:56709547-56709566 | None:intergenic | 45.0% | |
| TAGTCAGCTAAGGCAGGTAA+CGG | + | Chr4:56710362-56710381 | MsG0480021324.01.T01:three_prime_UTR | 45.0% | |
| TATTGTATCCAGTTCAGGCC+CGG | + | Chr4:56709765-56709784 | MsG0480021324.01.T01:CDS | 45.0% | |
| TCGTTCATGTTCAGAACCTG+AGG | - | Chr4:56709327-56709346 | None:intergenic | 45.0% | |
| TGCATGCAGGTCTATACTCA+GGG | - | Chr4:56710090-56710109 | None:intergenic | 45.0% | |
| TGCTAAACCACCGGCAAAAA+TGG | - | Chr4:56709414-56709433 | None:intergenic | 45.0% | |
| TGTCGTGTTAGTGACATGTG+TGG | - | Chr4:56709548-56709567 | None:intergenic | 45.0% | |
| TGTGGTGTTCGGTTTAAGTC+CGG | + | Chr4:56710055-56710074 | MsG0480021324.01.T01:CDS | 45.0% | |
| TTCATGTTCAGAACCTGAGG+TGG | - | Chr4:56709324-56709343 | None:intergenic | 45.0% | |
| ! | ACTGTGGCGTTTTCTGAACA+TGG | - | Chr4:56709994-56710013 | None:intergenic | 45.0% |
| ! | AGTGAGTGACTAGTCAGCTA+AGG | + | Chr4:56710352-56710371 | MsG0480021324.01.T01:three_prime_UTR | 45.0% |
| ! | CATAGTGTTTTCGGTCCAAG+CGG | - | Chr4:56710028-56710047 | None:intergenic | 45.0% |
| ! | TCTGCGGATTATAGAGAGCT+GGG | - | Chr4:56709831-56709850 | None:intergenic | 45.0% |
| ! | TGGTTGTTCTAGGCTTTCTG+CGG | - | Chr4:56709847-56709866 | None:intergenic | 45.0% |
| ! | TTCTGCGGATTATAGAGAGC+TGG | - | Chr4:56709832-56709851 | None:intergenic | 45.0% |
| !! | AAGCGTTGAAACCAAGCTTG+AGG | + | Chr4:56709102-56709121 | MsG0480021324.01.T01:CDS | 45.0% |
| !! | AGCTGGGAATAAGCATTGGT+TGG | - | Chr4:56709815-56709834 | None:intergenic | 45.0% |
| !! | GAGTCTGACTCCATTTTTGC+CGG | + | Chr4:56709401-56709420 | MsG0480021324.01.T01:CDS | 45.0% |
| !! | GCTGGGAATAAGCATTGGTT+GGG | - | Chr4:56709814-56709833 | None:intergenic | 45.0% |
| !! | TAAGGCAGGTAACGGAGATT+AGG | + | Chr4:56710370-56710389 | MsG0480021324.01.T01:three_prime_UTR | 45.0% |
| !!! | GGTCTGAACCGGGTTTTTTT+TGG | + | Chr4:56710305-56710324 | MsG0480021324.01.T01:three_prime_UTR | 45.0% |
| AAAAAGCCCGAAGCCCAAAC+GGG | + | Chr4:56709935-56709954 | MsG0480021324.01.T01:CDS | 50.0% | |
| AAAACCCGGTTCAGACCAGT+TGG | - | Chr4:56710302-56710321 | None:intergenic | 50.0% | |
| ACAGTTGGGCCTTCTTGTCT+TGG | - | Chr4:56709867-56709886 | None:intergenic | 50.0% | |
| ATACTCAGGGAAAAGCCGAC+CGG | - | Chr4:56710077-56710096 | None:intergenic | 50.0% | |
| ATTGTATCCAGTTCAGGCCC+GGG | + | Chr4:56709766-56709785 | MsG0480021324.01.T01:CDS | 50.0% | |
| CGGTCTGAACCGGATTCAAA+TGG | + | Chr4:56710198-56710217 | MsG0480021324.01.T01:CDS | 50.0% | |
| CTGCATGCAGGTCTATACTC+AGG | - | Chr4:56710091-56710110 | None:intergenic | 50.0% | |
| CTTCTTCTTCTTCCTCCTCC+TGG | - | Chr4:56709283-56709302 | None:intergenic | 50.0% | |
| GAAAAAGCCCGAAGCCCAAA+CGG | + | Chr4:56709934-56709953 | MsG0480021324.01.T01:CDS | 50.0% | |
| GGAATGGGTGTCTCACTTTG+TGG | + | Chr4:56709718-56709737 | MsG0480021324.01.T01:CDS | 50.0% | |
| GTGTTCGGTTTAAGTCCGGT+CGG | + | Chr4:56710059-56710078 | MsG0480021324.01.T01:CDS | 50.0% | |
| TCATTCGAACAGCCACCGTA+AGG | + | Chr4:56710132-56710151 | MsG0480021324.01.T01:CDS | 50.0% | |
| TTCTCAGGCCGATGATGTTG+CGG | + | Chr4:56709691-56709710 | MsG0480021324.01.T01:intron | 50.0% | |
| TTTGGAAATGAGGCGGAGGA+AGG | + | Chr4:56710156-56710175 | MsG0480021324.01.T01:CDS | 50.0% | |
| ! | AGTGACTAGTCAGCTAAGGC+AGG | + | Chr4:56710356-56710375 | MsG0480021324.01.T01:three_prime_UTR | 50.0% |
| ! | GAACAGCCACCGTAAGGTTT+TGG | + | Chr4:56710138-56710157 | MsG0480021324.01.T01:CDS | 50.0% |
| ! | GCGTTTTCTGAACATGGCAG+TGG | - | Chr4:56709988-56710007 | None:intergenic | 50.0% |
| ! | GTGAACCAACTGGTCTGAAC+CGG | + | Chr4:56710294-56710313 | MsG0480021324.01.T01:three_prime_UTR | 50.0% |
| ! | TCCACAACATTTTCCGGTGC+CGG | + | Chr4:56709371-56709390 | MsG0480021324.01.T01:CDS | 50.0% |
| ! | TGAACCAACTGGTCTGAACC+GGG | + | Chr4:56710295-56710314 | MsG0480021324.01.T01:three_prime_UTR | 50.0% |
| !! | GAATAAGCATTGGTTGGGCC+CGG | - | Chr4:56709809-56709828 | None:intergenic | 50.0% |
| !! | TCTGACTCCATTTTTGCCGG+TGG | + | Chr4:56709404-56709423 | MsG0480021324.01.T01:CDS | 50.0% |
| !!! | AGGTTTTGGAAATGAGGCGG+AGG | + | Chr4:56710152-56710171 | MsG0480021324.01.T01:CDS | 50.0% |
| AAAACGCCACAGTGGAGAGC+TGG | + | Chr4:56710001-56710020 | MsG0480021324.01.T01:CDS | 55.0% | |
| AAACTGAGCCCCACCCGTTT+GGG | - | Chr4:56709951-56709970 | None:intergenic | 55.0% | |
| ATCCGGTTCAGACCGGAAAC+CGG | - | Chr4:56710193-56710212 | None:intergenic | 55.0% | |
| CACCGGAACTGCTAAACCAC+CGG | - | Chr4:56709423-56709442 | None:intergenic | 55.0% | |
| GAAGGCCCAACTGTAACGTG+TGG | + | Chr4:56709873-56709892 | MsG0480021324.01.T01:CDS | 55.0% | |
| GACACGACACAAACACCGAC+CGG | - | Chr4:56709625-56709644 | None:intergenic | 55.0% | |
| GAGGAAGGAGGTGGATGAAC+CGG | + | Chr4:56710171-56710190 | MsG0480021324.01.T01:CDS | 55.0% | |
| GGCCGATGATGTTGCGGATT+TGG | + | Chr4:56709697-56709716 | MsG0480021324.01.T01:intron | 55.0% | |
| GTGGGGCTCAGTTTCAACGA+CGG | + | Chr4:56709957-56709976 | MsG0480021324.01.T01:CDS | 55.0% | |
| TGCCGGTGGTTTAGCAGTTC+CGG | + | Chr4:56709418-56709437 | MsG0480021324.01.T01:CDS | 55.0% | |
| ! | AACCGGTTTCCGGTCTGAAC+CGG | + | Chr4:56710188-56710207 | MsG0480021324.01.T01:CDS | 55.0% |
| ! | GAGGTGGATGAACCGGTTTC+CGG | + | Chr4:56710178-56710197 | MsG0480021324.01.T01:CDS | 55.0% |
| ! | TCCGGCACCGGAAAATGTTG+TGG | - | Chr4:56709375-56709394 | None:intergenic | 55.0% |
| !! | ACATTTTCCGGTGCCGGAGA+CGG | + | Chr4:56709377-56709396 | MsG0480021324.01.T01:CDS | 55.0% |
| AATGAGGCGGAGGAAGGAGG+TGG | + | Chr4:56710162-56710181 | MsG0480021324.01.T01:CDS | 60.0% | |
| GAAAACGTCGGGCTGCATGC+AGG | - | Chr4:56710103-56710122 | None:intergenic | 60.0% | |
| GAAACTGAGCCCCACCCGTT+TGG | - | Chr4:56709952-56709971 | None:intergenic | 60.0% | |
| GGAAATGAGGCGGAGGAAGG+AGG | + | Chr4:56710159-56710178 | MsG0480021324.01.T01:CDS | 60.0% | |
| ! | GCATGCAGCCCGACGTTTTC+CGG | + | Chr4:56710103-56710122 | MsG0480021324.01.T01:CDS | 60.0% |
| AAGCCCGAAGCCCAAACGGG+TGG | + | Chr4:56709938-56709957 | MsG0480021324.01.T01:CDS | 65.0% | |
| AGCCCCACCCGTTTGGGCTT+CGG | - | Chr4:56709945-56709964 | None:intergenic | 65.0% | |
| AGCCCGAAGCCCAAACGGGT+GGG | + | Chr4:56709939-56709958 | MsG0480021324.01.T01:CDS | 65.0% | |
| AGCGGACCAGCTCTCCACTG+TGG | - | Chr4:56710010-56710029 | None:intergenic | 65.0% | |
| CAGTGGAGAGCTGGTCCGCT+TGG | + | Chr4:56710010-56710029 | MsG0480021324.01.T01:CDS | 65.0% | |
| GCCCGGTCTAGGTTCCGGTT+CGG | - | Chr4:56709792-56709811 | None:intergenic | 65.0% | |
| GCCGAACCGGAACCTAGACC+GGG | + | Chr4:56709788-56709807 | MsG0480021324.01.T01:CDS | 65.0% | |
| GGAGTCAGACTCGCCGTCTC+CGG | - | Chr4:56709393-56709412 | None:intergenic | 65.0% | |
| GGCCGAACCGGAACCTAGAC+CGG | + | Chr4:56709787-56709806 | MsG0480021324.01.T01:CDS | 65.0% | |
| GTTGGGCCCGGTCTAGGTTC+CGG | - | Chr4:56709797-56709816 | None:intergenic | 65.0% | |
| !! | GCATTGGTTGGGCCCGGTCT+AGG | - | Chr4:56709803-56709822 | None:intergenic | 65.0% |
| !! | GTCTAGGTTCCGGTTCGGCC+CGG | - | Chr4:56709787-56709806 | None:intergenic | 65.0% |
| !! | TCTAGGTTCCGGTTCGGCCC+GGG | - | Chr4:56709786-56709805 | None:intergenic | 65.0% |
| AGACTCGCCGTCTCCGGCAC+CGG | - | Chr4:56709387-56709406 | None:intergenic | 70.0% | |
| AGTTCAGGCCCGGGCCGAAC+CGG | + | Chr4:56709775-56709794 | MsG0480021324.01.T01:CDS | 70.0% | |
| GCCCCACCCGTTTGGGCTTC+GGG | - | Chr4:56709944-56709963 | None:intergenic | 70.0% | |
| GCCCGAAGCCCAAACGGGTG+GGG | + | Chr4:56709940-56709959 | MsG0480021324.01.T01:CDS | 70.0% | |
| GGTTCGGCCCGGGCCTGAAC+TGG | - | Chr4:56709776-56709795 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 56709034 | 56710559 | 56709034 | ID=MsG0480021324.01;Name=MsG0480021324.01 |
| Chr4 | mRNA | 56709034 | 56710559 | 56709034 | ID=MsG0480021324.01.T01;Parent=MsG0480021324.01;Name=MsG0480021324.01.T01;_AED=0.17;_eAED=0.17;_QI=49|1|1|1|1|1|2|328|296 |
| Chr4 | exon | 56709034 | 56709439 | 56709034 | ID=MsG0480021324.01.T01:exon:6443;Parent=MsG0480021324.01.T01 |
| Chr4 | exon | 56709698 | 56710559 | 56709698 | ID=MsG0480021324.01.T01:exon:6444;Parent=MsG0480021324.01.T01 |
| Chr4 | five_prime_UTR | 56709034 | 56709082 | 56709034 | ID=MsG0480021324.01.T01:five_prime_utr;Parent=MsG0480021324.01.T01 |
| Chr4 | CDS | 56709083 | 56709439 | 56709083 | ID=MsG0480021324.01.T01:cds;Parent=MsG0480021324.01.T01 |
| Chr4 | CDS | 56709698 | 56710231 | 56709698 | ID=MsG0480021324.01.T01:cds;Parent=MsG0480021324.01.T01 |
| Chr4 | three_prime_UTR | 56710232 | 56710559 | 56710232 | ID=MsG0480021324.01.T01:three_prime_utr;Parent=MsG0480021324.01.T01 |
| Gene Sequence |
| Protein sequence |
