AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022364.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022364.01.T01 MTR_4g088605 83.165 297 27 2 73 369 1 274 3.16e-169 473
MsG0480022364.01.T01 MTR_7g083700 34.483 174 99 6 170 340 119 280 1.25e-18 85.9
MsG0480022364.01.T01 MTR_7g059330 42.105 95 54 1 172 265 618 712 1.95e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022364.01.T01 AT1G28300 46.667 105 55 1 170 273 163 267 1.51e-24 103
MsG0480022364.01.T01 AT3G24650 34.783 161 94 4 172 328 566 719 9.94e-19 88.2
MsG0480022364.01.T01 AT3G26790 35.294 119 75 2 170 286 84 202 1.20e-18 85.9

Find 80 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTGGATATTATTAATT+TGG 0.137250 4:-71621175 None:intergenic
AATTCAGTCGACTAATAATT+TGG 0.175655 4:+71623079 MsG0480022364.01.T01:CDS
TTCCATAGGTATTGGATTAA+TGG 0.179633 4:+71622338 MsG0480022364.01.T01:intron
AGGTGACATTGCAGTATTAT+TGG 0.262098 4:-71623138 None:intergenic
TACTGCAATGTCACCTATAT+TGG 0.265257 4:+71623145 MsG0480022364.01.T01:CDS
TTGCAGTATTATTGGTTTCT+TGG 0.266997 4:-71623130 None:intergenic
AAACATGTGGAGTTCTTTCT+TGG 0.273984 4:-71621529 None:intergenic
ATGATGGGTTGGTGAAATAT+TGG 0.320778 4:-71621073 None:intergenic
TGCAGTATTATTGGTTTCTT+GGG 0.347184 4:-71623129 None:intergenic
GAAGTGGATATTATTAATTT+GGG 0.349859 4:-71621174 None:intergenic
TTTACAGTCACCTTTCCATC+TGG 0.356987 4:-71621560 None:intergenic
TGGTTTCTTGGGCGACTGAT+TGG 0.387076 4:-71623118 None:intergenic
TATATTGGACCATACCGTTT+TGG 0.402644 4:+71623160 MsG0480022364.01.T01:CDS
TATTAGTCGACTGAATTTGT+TGG 0.408347 4:-71623073 None:intergenic
TAAAACTAGAATGTATATTC+TGG 0.416222 4:+71622361 MsG0480022364.01.T01:CDS
ATCCCTTCTTTGCTAGGGGC+TGG 0.418097 4:-71622160 None:intergenic
CTTCAATCCCTTCTTTGCTA+GGG 0.422481 4:-71622165 None:intergenic
AACATGTGGAGTTCTTTCTT+GGG 0.423807 4:-71621528 None:intergenic
CTTCCAGCCCCTAGCAAAGA+AGG 0.423970 4:+71622157 MsG0480022364.01.T01:CDS
CTCCCATGCATAGTTTGTAA+TGG 0.426934 4:-71622500 None:intergenic
TCTTGGGCGACTGATTGGTT+TGG 0.430360 4:-71623113 None:intergenic
CTATGCATGGGAGATTATCT+AGG 0.431047 4:+71622510 MsG0480022364.01.T01:CDS
ACTTCAATCCCTTCTTTGCT+AGG 0.433841 4:-71622166 None:intergenic
AAAACGGTATGGTCCAATAT+AGG 0.437137 4:-71623158 None:intergenic
GTATAGAAGAGGAGATAAGA+AGG 0.451944 4:-71621109 None:intergenic
AAGAGCGATGTTAAGAACTA+TGG 0.459102 4:+71621698 MsG0480022364.01.T01:CDS
AGGCGAGCGGTGGATGATGA+TGG 0.466069 4:-71621089 None:intergenic
ACTTTATTCCTCTTCTCTGA+TGG 0.466086 4:+71621307 MsG0480022364.01.T01:CDS
ATCATTACCATCTGCCAAAA+CGG 0.475707 4:-71623174 None:intergenic
TTATGTGTGGGGTGAGTTGA+AGG 0.480404 4:-71621227 None:intergenic
ATATATATTCTGGTCGTGAA+TGG 0.483145 4:+71622200 MsG0480022364.01.T01:CDS
ATGTATATTCTGGAGGATAC+AGG 0.488201 4:+71622371 MsG0480022364.01.T01:CDS
TCCTCAACTTGGAGTTGAAA+GGG 0.488533 4:+71621364 MsG0480022364.01.T01:CDS
TGGGCGACTGATTGGTTTGG+TGG 0.491784 4:-71623110 None:intergenic
CTTTATTCCTCTTCTCTGAT+GGG 0.493478 4:+71621308 MsG0480022364.01.T01:CDS
ATTAATTTGGGAAATTTCCA+TGG 0.498425 4:-71621162 None:intergenic
AGATTATCTAGGCCTTTATG+AGG 0.503786 4:+71622521 MsG0480022364.01.T01:CDS
TGATGGGTTGGTGAAATATT+GGG 0.505543 4:-71621072 None:intergenic
AAACCATTACAAACTATGCA+TGG 0.506884 4:+71622497 MsG0480022364.01.T01:CDS
TTACAGTCACCTTTCCATCT+GGG 0.507868 4:-71621559 None:intergenic
TTCAATCCCTTCTTTGCTAG+GGG 0.508172 4:-71622164 None:intergenic
CATCGAGGAAATTGTATGCA+TGG 0.513461 4:-71621270 None:intergenic
TCCTTGCCTTGGTCTGCACA+AGG 0.515897 4:-71623026 None:intergenic
CTCCTCAACTTGGAGTTGAA+AGG 0.517571 4:+71621363 MsG0480022364.01.T01:CDS
ATCGAGGAAATTGTATGCAT+GGG 0.519150 4:-71621269 None:intergenic
TGAGTTGAAGGAAAGAGAAA+TGG 0.519370 4:-71621215 None:intergenic
GATCATTATTATTAGAGAAG+TGG 0.524679 4:-71621190 None:intergenic
GGAGTAGTTTGAATTATGAA+AGG 0.529192 4:-71621344 None:intergenic
ATTCAAACTACTCCTCAACT+TGG 0.533290 4:+71621353 MsG0480022364.01.T01:CDS
AGCGGTGGATGATGATGGGT+TGG 0.536443 4:-71621084 None:intergenic
TGTTGGTTGGCCAAGTCTGA+TGG 0.537691 4:-71623056 None:intergenic
TACCATCTGCCAAAACGGTA+TGG 0.545052 4:-71623169 None:intergenic
TCCCTTTCAACTCCAAGTTG+AGG 0.546205 4:-71621365 None:intergenic
GGAGATAAGAAGGCGAGCGG+TGG 0.551878 4:-71621099 None:intergenic
CGATGAACAACAAAGCAGCT+TGG 0.554733 4:+71623214 MsG0480022364.01.T01:CDS
AAAATTCAAATAGAGGGAGG+TGG 0.561158 4:+71622126 MsG0480022364.01.T01:intron
ACTTGGAGTTGAAAGGGAAG+AGG 0.563033 4:+71621370 MsG0480022364.01.T01:CDS
GAAGAGGAATAAAGTTCATG+AGG 0.578069 4:-71621299 None:intergenic
AACCATTACAAACTATGCAT+GGG 0.584630 4:+71622498 MsG0480022364.01.T01:CDS
AGTCGACTGAATTTGTTGGT+TGG 0.588883 4:-71623069 None:intergenic
GGCTTGTGATCTATCGACAC+TGG 0.594889 4:+71622995 MsG0480022364.01.T01:CDS
ACTTTGTCCCATCAGAGAAG+AGG 0.602953 4:-71621315 None:intergenic
GTTTGACGATGGTATAGAAG+AGG 0.607792 4:-71621120 None:intergenic
AACTAGAATGTATATTCTGG+AGG 0.612428 4:+71622364 MsG0480022364.01.T01:CDS
AGATGTTTCACAACAAACCA+TGG 0.615142 4:+71621145 MsG0480022364.01.T01:CDS
GCAGATGGTAATGATGGTGG+TGG 0.618739 4:+71623182 MsG0480022364.01.T01:CDS
GATGTTGAATAATTATGTGT+GGG 0.619405 4:-71621239 None:intergenic
TTCCAGCCCCTAGCAAAGAA+GGG 0.619594 4:+71622158 MsG0480022364.01.T01:CDS
CGATGTTGAATAATTATGTG+TGG 0.619892 4:-71621240 None:intergenic
GCAAAATTGCTAGAGAACAA+AGG 0.622012 4:+71621420 MsG0480022364.01.T01:CDS
ACCTTGTGCAGACCAAGGCA+AGG 0.622413 4:+71623025 MsG0480022364.01.T01:CDS
CTCTTACCTTGTGCAGACCA+AGG 0.626902 4:+71623020 MsG0480022364.01.T01:CDS
TGGTCGCATTGTCCTCCCAA+AGG 0.635548 4:+71621718 MsG0480022364.01.T01:CDS
GGCGAGCGGTGGATGATGAT+GGG 0.639553 4:-71621088 None:intergenic
TTGGCAGATGGTAATGATGG+TGG 0.656936 4:+71623179 MsG0480022364.01.T01:CDS
AGAGGAGATAAGAAGGCGAG+CGG 0.661248 4:-71621102 None:intergenic
TTCATGAGGTTGATTCATCG+AGG 0.675142 4:-71621285 None:intergenic
AAGAAGCCCTCACCTTTGGG+AGG 0.679981 4:-71621730 None:intergenic
ATGTTGAATAATTATGTGTG+GGG 0.694708 4:-71621238 None:intergenic
GAAACATCTATGTTTGACGA+TGG 0.709048 4:-71621131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTGTTCTTT+TGG + Chr4:71622071-71622090 MsG0480022364.01.T01:intron 10.0%
!!! TTTTTTATAAATCATAACAA+CGG - Chr4:71621841-71621860 None:intergenic 10.0%
!!! TTTTTATAAATCATAACAAC+GGG - Chr4:71621840-71621859 None:intergenic 15.0%
!! AGAAGTGGATATTATTAATT+TGG - Chr4:71621178-71621197 None:intergenic 20.0%
!! GAAGTGGATATTATTAATTT+GGG - Chr4:71621177-71621196 None:intergenic 20.0%
!! TAAAACTAGAATGTATATTC+TGG + Chr4:71622361-71622380 MsG0480022364.01.T01:CDS 20.0%
!!! ATTTTCAAGGATATATATTC+TGG + Chr4:71622190-71622209 MsG0480022364.01.T01:CDS 20.0%
!!! TACAATCATTTTTTTCATCT+GGG - Chr4:71622742-71622761 None:intergenic 20.0%
! AAACATCAAAAATATCGTCA+AGG - Chr4:71623256-71623275 None:intergenic 25.0%
! AATTCAGTCGACTAATAATT+TGG + Chr4:71623079-71623098 MsG0480022364.01.T01:CDS 25.0%
! AGAAAAAAATTGAAGCAAAG+AGG + Chr4:71621396-71621415 MsG0480022364.01.T01:CDS 25.0%
! ATGTTGAATAATTATGTGTG+GGG - Chr4:71621241-71621260 None:intergenic 25.0%
! GATCATTATTATTAGAGAAG+TGG - Chr4:71621193-71621212 None:intergenic 25.0%
! GATGTTGAATAATTATGTGT+GGG - Chr4:71621242-71621261 None:intergenic 25.0%
!! ATTAATTTGGGAAATTTCCA+TGG - Chr4:71621165-71621184 None:intergenic 25.0%
!! ATTTTCTCTCTTAATGTAAC+AGG + Chr4:71622465-71622484 MsG0480022364.01.T01:intron 25.0%
!! TGTGGTATTTATTACTCTTT+TGG + Chr4:71621602-71621621 MsG0480022364.01.T01:intron 25.0%
!! TTTTCTCTCTTAATGTAACA+GGG + Chr4:71622466-71622485 MsG0480022364.01.T01:intron 25.0%
!!! CTACAATCATTTTTTTCATC+TGG - Chr4:71622743-71622762 None:intergenic 25.0%
!!! TATTGTTTTACAACTCACAA+TGG - Chr4:71622907-71622926 None:intergenic 25.0%
AAACCATTACAAACTATGCA+TGG + Chr4:71622497-71622516 MsG0480022364.01.T01:CDS 30.0%
AAATTAGCAACACTAAGAAG+TGG - Chr4:71622404-71622423 None:intergenic 30.0%
AACCATTACAAACTATGCAT+GGG + Chr4:71622498-71622517 MsG0480022364.01.T01:CDS 30.0%
AACTAGAATGTATATTCTGG+AGG + Chr4:71622364-71622383 MsG0480022364.01.T01:CDS 30.0%
ACAAAGCTTGAAATCTTTCA+TGG + Chr4:71622030-71622049 MsG0480022364.01.T01:intron 30.0%
AGTTTATACCCATTAGAGTT+TGG - Chr4:71622313-71622332 None:intergenic 30.0%
ATAAGAGAAGTCTGTAAACA+TGG - Chr4:71622804-71622823 None:intergenic 30.0%
ATATATATTCTGGTCGTGAA+TGG + Chr4:71622200-71622219 MsG0480022364.01.T01:CDS 30.0%
CGATGTTGAATAATTATGTG+TGG - Chr4:71621243-71621262 None:intergenic 30.0%
GGAGTAGTTTGAATTATGAA+AGG - Chr4:71621347-71621366 None:intergenic 30.0%
GTATAAACTGGAAATTCCAT+AGG + Chr4:71622324-71622343 MsG0480022364.01.T01:intron 30.0%
TACCATTAATCCAATACCTA+TGG - Chr4:71622343-71622362 None:intergenic 30.0%
TATTAGTCGACTGAATTTGT+TGG - Chr4:71623076-71623095 None:intergenic 30.0%
TCTCCCAAAATTCAAATAGA+GGG + Chr4:71622120-71622139 MsG0480022364.01.T01:intron 30.0%
TGAGGACGAACTTAAAAATT+TGG + Chr4:71622539-71622558 MsG0480022364.01.T01:CDS 30.0%
TTCTCCCAAAATTCAAATAG+AGG + Chr4:71622119-71622138 MsG0480022364.01.T01:intron 30.0%
! AAACTCTAATGGGTATAAAC+TGG + Chr4:71622312-71622331 MsG0480022364.01.T01:intron 30.0%
! GTTTCAGTTCTCATGATTTT+GGG + Chr4:71622429-71622448 MsG0480022364.01.T01:intron 30.0%
! TGTTTCAGTTCTCATGATTT+TGG + Chr4:71622428-71622447 MsG0480022364.01.T01:intron 30.0%
!! TGCAGTATTATTGGTTTCTT+GGG - Chr4:71623132-71623151 None:intergenic 30.0%
!! TTCCATAGGTATTGGATTAA+TGG + Chr4:71622338-71622357 MsG0480022364.01.T01:intron 30.0%
!! TTGCAGTATTATTGGTTTCT+TGG - Chr4:71623133-71623152 None:intergenic 30.0%
!!! TTTTAAGTTCGTCCTCATAA+AGG - Chr4:71622536-71622555 None:intergenic 30.0%
AAAACGGTATGGTCCAATAT+AGG - Chr4:71623161-71623180 None:intergenic 35.0%
AAAATTCAAATAGAGGGAGG+TGG + Chr4:71622126-71622145 MsG0480022364.01.T01:intron 35.0%
AAACATGTGGAGTTCTTTCT+TGG - Chr4:71621532-71621551 None:intergenic 35.0%
AACATGTGGAGTTCTTTCTT+GGG - Chr4:71621531-71621550 None:intergenic 35.0%
AAGAGCGATGTTAAGAACTA+TGG + Chr4:71621698-71621717 MsG0480022364.01.T01:CDS 35.0%
ACTGGAAATTCCATAGGTAT+TGG + Chr4:71622330-71622349 MsG0480022364.01.T01:intron 35.0%
ACTTTATTCCTCTTCTCTGA+TGG + Chr4:71621307-71621326 MsG0480022364.01.T01:CDS 35.0%
AGATGTTTCACAACAAACCA+TGG + Chr4:71621145-71621164 MsG0480022364.01.T01:CDS 35.0%
AGATTATCTAGGCCTTTATG+AGG + Chr4:71622521-71622540 MsG0480022364.01.T01:CDS 35.0%
AGGTGACATTGCAGTATTAT+TGG - Chr4:71623141-71623160 None:intergenic 35.0%
ATCATTACCATCTGCCAAAA+CGG - Chr4:71623177-71623196 None:intergenic 35.0%
ATCGAGGAAATTGTATGCAT+GGG - Chr4:71621272-71621291 None:intergenic 35.0%
ATTCAAACTACTCCTCAACT+TGG + Chr4:71621353-71621372 MsG0480022364.01.T01:CDS 35.0%
CTTTATTCCTCTTCTCTGAT+GGG + Chr4:71621308-71621327 MsG0480022364.01.T01:CDS 35.0%
GAAACATCTATGTTTGACGA+TGG - Chr4:71621134-71621153 None:intergenic 35.0%
GAAGAGGAATAAAGTTCATG+AGG - Chr4:71621302-71621321 None:intergenic 35.0%
GAAGTCTGTAAACATGGTAA+TGG - Chr4:71622798-71622817 None:intergenic 35.0%
GCAAAATTGCTAGAGAACAA+AGG + Chr4:71621420-71621439 MsG0480022364.01.T01:CDS 35.0%
GTATAGAAGAGGAGATAAGA+AGG - Chr4:71621112-71621131 None:intergenic 35.0%
TACTGCAATGTCACCTATAT+TGG + Chr4:71623145-71623164 MsG0480022364.01.T01:CDS 35.0%
TATACCCATTAGAGTTTGGA+AGG - Chr4:71622309-71622328 None:intergenic 35.0%
TCTGGGTTGTAAAAAACATG+TGG - Chr4:71621545-71621564 None:intergenic 35.0%
! ACCTCCCTCTATTTGAATTT+TGG - Chr4:71622127-71622146 None:intergenic 35.0%
! ATGTATATTCTGGAGGATAC+AGG + Chr4:71622371-71622390 MsG0480022364.01.T01:CDS 35.0%
! CCTCCCTCTATTTGAATTTT+GGG - Chr4:71622126-71622145 None:intergenic 35.0%
! TATATTGGACCATACCGTTT+TGG + Chr4:71623160-71623179 MsG0480022364.01.T01:CDS 35.0%
! TGAGTTGAAGGAAAGAGAAA+TGG - Chr4:71621218-71621237 None:intergenic 35.0%
! TTTTTACAACCCAGATGGAA+AGG + Chr4:71621550-71621569 MsG0480022364.01.T01:CDS 35.0%
!! AGGGATTGAAGTCATTTTCA+AGG + Chr4:71622177-71622196 MsG0480022364.01.T01:CDS 35.0%
!! ATGATGGGTTGGTGAAATAT+TGG - Chr4:71621076-71621095 None:intergenic 35.0%
!! TGATGGGTTGGTGAAATATT+GGG - Chr4:71621075-71621094 None:intergenic 35.0%
!! TGTGTCACTGTATTTTCGAA+AGG - Chr4:71621995-71622014 None:intergenic 35.0%
!!! CATGTTTTTTACAACCCAGA+TGG + Chr4:71621545-71621564 MsG0480022364.01.T01:CDS 35.0%
ACTTCAATCCCTTCTTTGCT+AGG - Chr4:71622169-71622188 None:intergenic 40.0%
CATCGAGGAAATTGTATGCA+TGG - Chr4:71621273-71621292 None:intergenic 40.0%
CCCAAAATTCAAATAGAGGG+AGG + Chr4:71622123-71622142 MsG0480022364.01.T01:intron 40.0%
CTATGCATGGGAGATTATCT+AGG + Chr4:71622510-71622529 MsG0480022364.01.T01:CDS 40.0%
CTTCAATCCCTTCTTTGCTA+GGG - Chr4:71622168-71622187 None:intergenic 40.0%
GCAGTATGTGTGCACAAAAA+AGG + Chr4:71622974-71622993 MsG0480022364.01.T01:intron 40.0%
GGAAAAAGAACCATCAGACT+TGG + Chr4:71623046-71623065 MsG0480022364.01.T01:CDS 40.0%
GTTTGACGATGGTATAGAAG+AGG - Chr4:71621123-71621142 None:intergenic 40.0%
TCCTCAACTTGGAGTTGAAA+GGG + Chr4:71621364-71621383 MsG0480022364.01.T01:CDS 40.0%
TTACAGTCACCTTTCCATCT+GGG - Chr4:71621562-71621581 None:intergenic 40.0%
TTCAATCCCTTCTTTGCTAG+GGG - Chr4:71622167-71622186 None:intergenic 40.0%
TTTACAGTCACCTTTCCATC+TGG - Chr4:71621563-71621582 None:intergenic 40.0%
! ATGGTTCTTTTTCCTTGCCT+TGG - Chr4:71623040-71623059 None:intergenic 40.0%
! CTCCCATGCATAGTTTGTAA+TGG - Chr4:71622503-71622522 None:intergenic 40.0%
! TTCATGAGGTTGATTCATCG+AGG - Chr4:71621288-71621307 None:intergenic 40.0%
!! AGTCGACTGAATTTGTTGGT+TGG - Chr4:71623072-71623091 None:intergenic 40.0%
!! GTTTTGGCAGATGGTAATGA+TGG + Chr4:71623176-71623195 MsG0480022364.01.T01:CDS 40.0%
ACTTGGAGTTGAAAGGGAAG+AGG + Chr4:71621370-71621389 MsG0480022364.01.T01:CDS 45.0%
ACTTTGTCCCATCAGAGAAG+AGG - Chr4:71621318-71621337 None:intergenic 45.0%
ATGAAGAAGCCCTCACCTTT+GGG - Chr4:71621736-71621755 None:intergenic 45.0%
CATGAACTCTTCTTTGTGCG+AGG + Chr4:71622949-71622968 MsG0480022364.01.T01:intron 45.0%
CGATGAACAACAAAGCAGCT+TGG + Chr4:71623214-71623233 MsG0480022364.01.T01:CDS 45.0%
CTCCTCAACTTGGAGTTGAA+AGG + Chr4:71621363-71621382 MsG0480022364.01.T01:CDS 45.0%
GTCGCCTTCCAAACTCTAAT+GGG + Chr4:71622302-71622321 MsG0480022364.01.T01:intron 45.0%
GTGAGGGCTTCTTCATCAAA+GGG + Chr4:71621740-71621759 MsG0480022364.01.T01:intron 45.0%
TACCATCTGCCAAAACGGTA+TGG - Chr4:71623172-71623191 None:intergenic 45.0%
TCCCTTTCAACTCCAAGTTG+AGG - Chr4:71621368-71621387 None:intergenic 45.0%
TGTCGCCTTCCAAACTCTAA+TGG + Chr4:71622301-71622320 MsG0480022364.01.T01:intron 45.0%
! TTATGTGTGGGGTGAGTTGA+AGG - Chr4:71621230-71621249 None:intergenic 45.0%
! TTGGCAGATGGTAATGATGG+TGG + Chr4:71623179-71623198 MsG0480022364.01.T01:CDS 45.0%
!! TTTAATTAATTATATTTATG+TGG + Chr4:71621584-71621603 MsG0480022364.01.T01:intron 5.0%
!!! ATATTAATAACTTTTATAAA+AGG - Chr4:71622577-71622596 None:intergenic 5.0%
AGAGGAGATAAGAAGGCGAG+CGG - Chr4:71621105-71621124 None:intergenic 50.0%
CATTGTCCTCCCAAAGGTGA+GGG + Chr4:71621724-71621743 MsG0480022364.01.T01:intron 50.0%
CTCTTACCTTGTGCAGACCA+AGG + Chr4:71623020-71623039 MsG0480022364.01.T01:CDS 50.0%
GATGAAGAAGCCCTCACCTT+TGG - Chr4:71621737-71621756 None:intergenic 50.0%
GGCTTGTGATCTATCGACAC+TGG + Chr4:71622995-71623014 MsG0480022364.01.T01:CDS 50.0%
GGTGAGGGCTTCTTCATCAA+AGG + Chr4:71621739-71621758 MsG0480022364.01.T01:intron 50.0%
TGGTTTCTTGGGCGACTGAT+TGG - Chr4:71623121-71623140 None:intergenic 50.0%
TTCCAGCCCCTAGCAAAGAA+GGG + Chr4:71622158-71622177 MsG0480022364.01.T01:CDS 50.0%
! TCTGGGAAGTGTGCATTGAC+TGG - Chr4:71622725-71622744 None:intergenic 50.0%
! TCTTGGGCGACTGATTGGTT+TGG - Chr4:71623116-71623135 None:intergenic 50.0%
! TGTTGGTTGGCCAAGTCTGA+TGG - Chr4:71623059-71623078 None:intergenic 50.0%
!! GACCATACCGTTTTGGCAGA+TGG + Chr4:71623167-71623186 MsG0480022364.01.T01:CDS 50.0%
!! GCAGATGGTAATGATGGTGG+TGG + Chr4:71623182-71623201 MsG0480022364.01.T01:CDS 50.0%
AAGAAGCCCTCACCTTTGGG+AGG - Chr4:71621733-71621752 None:intergenic 55.0%
ACCTTGTGCAGACCAAGGCA+AGG + Chr4:71623025-71623044 MsG0480022364.01.T01:CDS 55.0%
ATCCCTTCTTTGCTAGGGGC+TGG - Chr4:71622163-71622182 None:intergenic 55.0%
CTTCCAGCCCCTAGCAAAGA+AGG + Chr4:71622157-71622176 MsG0480022364.01.T01:CDS 55.0%
GCATTGTCCTCCCAAAGGTG+AGG + Chr4:71621723-71621742 MsG0480022364.01.T01:intron 55.0%
TCCTTGCCTTGGTCTGCACA+AGG - Chr4:71623029-71623048 None:intergenic 55.0%
TGGTCGCATTGTCCTCCCAA+AGG + Chr4:71621718-71621737 MsG0480022364.01.T01:CDS 55.0%
!! AGCGGTGGATGATGATGGGT+TGG - Chr4:71621087-71621106 None:intergenic 55.0%
!! TGGGCGACTGATTGGTTTGG+TGG - Chr4:71623113-71623132 None:intergenic 55.0%
AGGCGAGCGGTGGATGATGA+TGG - Chr4:71621092-71621111 None:intergenic 60.0%
GGAGATAAGAAGGCGAGCGG+TGG - Chr4:71621102-71621121 None:intergenic 60.0%
GGCGAGCGGTGGATGATGAT+GGG - Chr4:71621091-71621110 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 71621056 71623280 71621056 ID=MsG0480022364.01;Name=MsG0480022364.01
Chr4 mRNA 71621056 71623280 71621056 ID=MsG0480022364.01.T01;Parent=MsG0480022364.01;Name=MsG0480022364.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0|0|1|1|1|6|0|370
Chr4 exon 71621056 71621571 71621056 ID=MsG0480022364.01.T01:exon:9931;Parent=MsG0480022364.01.T01
Chr4 exon 71621665 71621739 71621665 ID=MsG0480022364.01.T01:exon:9932;Parent=MsG0480022364.01.T01
Chr4 exon 71622139 71622236 71622139 ID=MsG0480022364.01.T01:exon:9933;Parent=MsG0480022364.01.T01
Chr4 exon 71622346 71622392 71622346 ID=MsG0480022364.01.T01:exon:9934;Parent=MsG0480022364.01.T01
Chr4 exon 71622487 71622560 71622487 ID=MsG0480022364.01.T01:exon:9935;Parent=MsG0480022364.01.T01
Chr4 exon 71622978 71623280 71622978 ID=MsG0480022364.01.T01:exon:9936;Parent=MsG0480022364.01.T01
Chr4 CDS 71621056 71621571 71621056 ID=MsG0480022364.01.T01:cds;Parent=MsG0480022364.01.T01
Chr4 CDS 71621665 71621739 71621665 ID=MsG0480022364.01.T01:cds;Parent=MsG0480022364.01.T01
Chr4 CDS 71622139 71622236 71622139 ID=MsG0480022364.01.T01:cds;Parent=MsG0480022364.01.T01
Chr4 CDS 71622346 71622392 71622346 ID=MsG0480022364.01.T01:cds;Parent=MsG0480022364.01.T01
Chr4 CDS 71622487 71622560 71622487 ID=MsG0480022364.01.T01:cds;Parent=MsG0480022364.01.T01
Chr4 CDS 71622978 71623280 71622978 ID=MsG0480022364.01.T01:cds;Parent=MsG0480022364.01.T01
Gene Sequence

>MsG0480022364.01.T01

ATGGACAAATTGTTTGCCCAATATTTCACCAACCCATCATCATCCACCGCTCGCCTTCTTATCTCCTCTTCTATACCATCGTCAAACATAGATGTTTCACAACAAACCATGGAAATTTCCCAAATTAATAATATCCACTTCTCTAATAATAATGATCAACCATTTCTCTTTCCTTCAACTCACCCCACACATAATTATTCAACATCGTATAATCCCATGCATACAATTTCCTCGATGAATCAACCTCATGAACTTTATTCCTCTTCTCTGATGGGACAAAGTCACGTTCCTTTCATAATTCAAACTACTCCTCAACTTGGAGTTGAAAGGGAAGAGGATAAGAAAAAAATTGAAGCAAAGAGGTGCAAAATTGCTAGAGAACAAAGGAAACAAATACTAAAAAGAATCAGAAGTGAATCAGCTTCTAAGTTCACAGAAGAGACATCAAAGAGATCGTCTATTTATCGAGAGACCCAAGAAAGAACTCCACATGTTTTTTACAACCCAGATGGAAAGCGATTTGAAGAAATTCTAACAAAGAAGTTGAGAAAGAGCGATGTTAAGAACTATGGTCGCATTGTCCTCCCAAAGAGGGAGGTGGAAGAAAAGCTTCCAGCCCCTAGCAAAGAAGGGATTGAAGTCATTTTCAAGGATATATATTCTGGTCGTGAATGGAAATTGACACTCAAGTATTGGATTAATGGTAAAACTAGAATGTATATTCTGGAGGATACAGGGAATCTGTTAAACCATTACAAACTATGCATGGGAGATTATCTAGGCCTTTATGAGGACGAACTTAAAAATTTGTATGTGTGCACAAAAAAGGCTTGTGATCTATCGACACTGGATCTCTTACCTTGTGCAGACCAAGGCAAGGAAAAAGAACCATCAGACTTGGCCAACCAACAAATTCAGTCGACTAATAATTTGGAATTGAATCCACCAAACCAATCAGTCGCCCAAGAAACCAATAATACTGCAATGTCACCTATATTGGACCATACCGTTTTGGCAGATGGTAATGATGGTGGTGGTGATGATGACGATGAACAACAAAGCAGCTTGGACGAAATCTATGAGAGCCTTGACGATATTTTTGATGTTTATTAG
Protein sequence

>MsG0480022364.01.T01

MDKLFAQYFTNPSSSTARLLISSSIPSSNIDVSQQTMEISQINNIHFSNNNDQPFLFPSTHPTHNYSTSYNPMHTISSMNQPHELYSSSLMGQSHVPFIIQTTPQLGVEREEDKKKIEAKRCKIAREQRKQILKRIRSESASKFTEETSKRSSIYRETQERTPHVFYNPDGKRFEEILTKKLRKSDVKNYGRIVLPKREVEEKLPAPSKEGIEVIFKDIYSGREWKLTLKYWINGKTRMYILEDTGNLLNHYKLCMGDYLGLYEDELKNLYVCTKKACDLSTLDLLPCADQGKEKEPSDLANQQIQSTNNLELNPPNQSVAQETNNTAMSPILDHTVLADGNDGGGDDDDEQQSSLDEIYESLDDIFDVY*