AlfalfaGEDB | MsG0480022429.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022429.01

KEGG: -
GO: GO:0003700 GO:0006355
PFAM: PF07716

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022429.01.T01	XP_003607180.1	98.069	259	5	0	1	259	1	259	0	533

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022429.01.T01	Q8GTS2	60.92	261	82	6	1	260	1	242	1.19E-105	309

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022429.01.T01	B7FIL7	98.069	259	5	0	1	259	1	259	0.0	533

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0480022429.01.T01	TF	bZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022429.01.T01	MTR_4g073100	98.069	259	5	0	1	259	1	259	0.0	533

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022429.01.T01	AT2G16770	60.920	261	82	6	1	260	1	242	1.22e-106	309
MsG0480022429.01.T01	AT2G16770	60.920	261	82	6	1	260	1	242	1.22e-106	309
MsG0480022429.01.T01	AT4G35040	63.636	264	80	8	1	259	1	253	4.64e-106	308
MsG0480022429.01.T01	AT4G35040	63.636	264	80	8	1	259	1	253	4.64e-106	308
MsG0480022429.01.T01	AT4G35040	63.636	264	80	8	1	259	1	253	4.64e-106	308
MsG0480022429.01.T01	AT4G35040	63.636	264	80	8	1	259	1	253	4.64e-106	308
MsG0480022429.01.T01	AT3G51960	54.478	134	54	3	39	171	13	140	1.76e-45	151
MsG0480022429.01.T01	AT3G51960	54.478	134	54	3	39	171	52	179	4.45e-45	151
MsG0480022429.01.T01	AT3G51960	52.239	134	56	2	39	171	52	178	1.16e-43	148

Showing 1 to 9 of 9 entries

Previous1Next

Find 78 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGATCTTCGTGGTTGTGG+AGG	0.602836	4:+72499775	MsG0480022429.01.T01:CDS
AATCCCGCGATGAATTTGCC+TGG	0.562632	4:+72499589	MsG0480022429.01.T01:CDS
AATTCTGGCCTCCCATACAC+TGG	0.551814	4:-72499744	None:intergenic
ACACGTGTGGGTATGAGTAC+AGG	0.580524	4:-72499194	None:intergenic
ACACTTCAACCTCGCAACTT+CGG	0.570082	4:-72499494	None:intergenic
ACATTCGCGGGTTTCTGATA+CGG	0.475335	4:-72499565	None:intergenic
ACCAGGTGGGTTACACGTGT+GGG	0.610384	4:-72499206	None:intergenic
ACCCACACGTGTAACCCACC+TGG	0.607124	4:+72499205	MsG0480022429.01.T01:CDS
ACCGCCTCTTTATTCCCAAC+CGG	0.455765	4:-72499352	None:intergenic
ACCGGTTGGGAATAAAGAGG+CGG	0.690479	4:+72499351	MsG0480022429.01.T01:CDS

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCAAACAAGTGGTTCAA+TGG	+	Chr4:72499135-72499154	MsG0480022429.01.T01:CDS	30.0%
ATGGCTGAATTTCAAACAAG+TGG	+	Chr4:72499127-72499146	MsG0480022429.01.T01:CDS	35.0%
ATTTGATGAGGAAGTTGCAA+GGG	+	Chr4:72499455-72499474	MsG0480022429.01.T01:CDS	35.0%
CAAGCTTCCAGTAAAAGAAA+AGG	+	Chr4:72499826-72499845	MsG0480022429.01.T01:CDS	35.0%
CTTTGAATCAGCATTTGATG+AGG	+	Chr4:72499443-72499462	MsG0480022429.01.T01:CDS	35.0%
AGGATGAGGTCATGAAATTG+AGG	+	Chr4:72499419-72499438	MsG0480022429.01.T01:CDS	40.0%
ATATTAGGGGGAGGATTGAA+GGG	+	Chr4:72499527-72499546	MsG0480022429.01.T01:CDS	40.0%
ATCGTGAGAAGAAGAAAGCT+AGG	+	Chr4:72499383-72499402	MsG0480022429.01.T01:CDS	40.0%
CATCACACTGCACATTACAA+GGG	-	Chr4:72499630-72499649	None:intergenic	40.0%
CATTTGATGAGGAAGTTGCA+AGG	+	Chr4:72499454-72499473	MsG0480022429.01.T01:CDS	40.0%

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	72499073	72499858	72499073	ID=MsG0480022429.01;Name=MsG0480022429.01
Chr4	mRNA	72499073	72499858	72499073	ID=MsG0480022429.01.T01;Parent=MsG0480022429.01;Name=MsG0480022429.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|261
Chr4	exon	72499073	72499858	72499073	ID=MsG0480022429.01.T01:exon:10941;Parent=MsG0480022429.01.T01
Chr4	CDS	72499073	72499858	72499073	ID=MsG0480022429.01.T01:cds;Parent=MsG0480022429.01.T01

Gene Sequence

>MsG0480022429.01.T01

ATGGAAGACGGTGAACTTGATTTCTCAAATCAAGACGTGTTTTCGAGTCCAAACATGGCTGAATTTCAAACAAGTGGTTCAATGGATAGTTTTTTTGATGAATTGTTGAAGGATACACACGCCTGTACTCATACCCACACGTGTAACCCACCTGGTCCTGATTTTTCACACACTCACACGTGTTATCATGTTCACACCAAGATTGTCCCTGCTGAAGATGATCAGGTTGGGACTGATGATACTGCTGAATCTGCTGAGAAGAAGTCCAGTAAGAAGCGACCGGTTGGGAATAAAGAGGCGGTTAAGAAGTATCGTGAGAAGAAGAAAGCTAGGGCTGCGTCGTTGGAGGATGAGGTCATGAAATTGAGGGCTTTGAATCAGCATTTGATGAGGAAGTTGCAAGGGCAGGCTGCTTTGGAGGCCGAAGTTGCGAGGTTGAAGTGTTTGTTGGTTGATATTAGGGGGAGGATTGAAGGGGAAATTGGGTCGTTTCCGTATCAGAAACCCGCGAATGTGAATCCCGCGATGAATTTGCCTGGCTCTCATGTGATGAACCCTTGTAATGTGCAGTGTGATGATCGGGCATATTGCCTTCGTCCAGATGGGAAGATTGCTGCTGAAGTGGCGTTGCCGAATGAGGATGGATTTGATGGTTGTGAGTTTGAGAGTCTCCAGTGTATGGGAGGCCAGAATTTGGGGCTCAAGGATCTTCGTGGTTGTGGAGGTGGACCGGCGTTGTCTAATGTCAATTCTCAAGCTTCCAGTAAAAGAAAAGGTGATGACTGA

Protein sequence

>MsG0480022429.01.T01

MEDGELDFSNQDVFSSPNMAEFQTSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAEDDQVGTDDTAESAEKKSSKKRPVGNKEAVKKYREKKKARAASLEDEVMKLRALNQHLMRKLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPANVNPAMNLPGSHVMNPCNVQCDDRAYCLRPDGKIAAEVALPNEDGFDGCEFESLQCMGGQNLGLKDLRGCGGGPALSNVNSQASSKRKGDD*