Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022831.01.T01 | XP_013457399.1 | 100 | 183 | 0 | 0 | 1 | 183 | 199 | 381 | 6.19E-129 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022831.01.T01 | Q8GX46 | 41.463 | 164 | 67 | 3 | 7 | 156 | 128 | 276 | 4.36E-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022831.01.T01 | G8A1V6 | 100.000 | 183 | 0 | 0 | 1 | 183 | 199 | 381 | 2.96e-129 | 381 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480022831.01.T01 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022831.01.T01 | MTR_4g094762 | 100.000 | 183 | 0 | 0 | 1 | 183 | 199 | 381 | 7.50e-133 | 381 |
| MsG0480022831.01.T01 | MTR_1g056700 | 85.714 | 49 | 7 | 0 | 74 | 122 | 11 | 59 | 1.66e-22 | 86.7 |
| MsG0480022831.01.T01 | MTR_3g498695 | 40.000 | 80 | 47 | 1 | 80 | 159 | 285 | 363 | 2.70e-12 | 64.7 |
| MsG0480022831.01.T01 | MTR_3g498695 | 40.000 | 80 | 47 | 1 | 80 | 159 | 285 | 363 | 2.73e-12 | 64.7 |
| MsG0480022831.01.T01 | MTR_8g024770 | 39.189 | 74 | 44 | 1 | 95 | 168 | 280 | 352 | 3.82e-11 | 61.2 |
| MsG0480022831.01.T01 | MTR_1g072320 | 44.643 | 56 | 31 | 0 | 92 | 147 | 468 | 523 | 9.20e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022831.01.T01 | AT2G31210 | 41.463 | 164 | 67 | 3 | 7 | 156 | 128 | 276 | 4.45e-30 | 114 |
| MsG0480022831.01.T01 | AT2G31220 | 39.752 | 161 | 61 | 4 | 17 | 157 | 155 | 299 | 3.30e-28 | 109 |
| MsG0480022831.01.T01 | AT2G31220 | 39.752 | 161 | 61 | 4 | 17 | 157 | 166 | 310 | 3.81e-28 | 109 |
| MsG0480022831.01.T01 | AT1G06170 | 39.655 | 174 | 71 | 6 | 15 | 175 | 152 | 304 | 2.01e-27 | 107 |
| MsG0480022831.01.T01 | AT1G06170 | 39.655 | 174 | 71 | 6 | 15 | 175 | 152 | 304 | 2.01e-27 | 107 |
| MsG0480022831.01.T01 | AT2G31215 | 51.429 | 70 | 34 | 0 | 87 | 156 | 16 | 85 | 1.56e-15 | 70.1 |
| MsG0480022831.01.T01 | AT4G09820 | 39.189 | 74 | 44 | 1 | 95 | 167 | 364 | 437 | 3.90e-11 | 61.2 |
Find 91 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCAACCTCACGTTCTT+TGG | 0.205322 | 4:+77241880 | None:intergenic |
| GATGGAGGGAGATGGGGATA+TGG | 0.225091 | 4:-77242507 | MsG0480022831.01.T01:CDS |
| TGAGGTTCTTATCTTCCATC+TGG | 0.296185 | 4:+77241918 | None:intergenic |
| CTGTTTACCTTGGTGGGACT+TGG | 0.305763 | 4:+77242350 | None:intergenic |
| AGTTATAGTAAGAATTTCAT+AGG | 0.308575 | 4:-77241430 | MsG0480022831.01.T01:three_prime_UTR |
| GCTGTTTGTGTCCAAGGTTT+TGG | 0.309859 | 4:-77241799 | MsG0480022831.01.T01:three_prime_UTR |
| AGTGAATGAACTGAAATTAT+TGG | 0.342875 | 4:-77242033 | MsG0480022831.01.T01:CDS |
| AGCTGTAACATAAAGCCTTT+TGG | 0.367904 | 4:-77241945 | MsG0480022831.01.T01:CDS |
| CTCCACAGCCTCCAGCTCTC+AGG | 0.376170 | 4:-77242610 | MsG0480022831.01.T01:CDS |
| CCAACAGGTCATTGATGTTA+TGG | 0.381744 | 4:-77241570 | MsG0480022831.01.T01:three_prime_UTR |
| ATGGAGGGAGATGGGGATAT+GGG | 0.387229 | 4:-77242506 | MsG0480022831.01.T01:CDS |
| GTGATGAGATGGAGGGAGAT+GGG | 0.388952 | 4:-77242514 | MsG0480022831.01.T01:CDS |
| TGGGAGTGCTGGAATTCAAT+AGG | 0.389828 | 4:-77242487 | MsG0480022831.01.T01:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.414923 | 4:-77242695 | MsG0480022831.01.T01:CDS |
| TTTCTCAGTTGCAAAATGTT+TGG | 0.419556 | 4:+77242424 | None:intergenic |
| TTGCTTGCTGTTTGTGTCCA+AGG | 0.421896 | 4:-77241805 | MsG0480022831.01.T01:three_prime_UTR |
| GTTGGAACTTCACCAGTTGC+AGG | 0.424968 | 4:-77241767 | MsG0480022831.01.T01:three_prime_UTR |
| TCCCTGAGAGCTGGAGGCTG+TGG | 0.430359 | 4:+77242608 | None:intergenic |
| TTTGATGCAAAATTATTGTC+AGG | 0.431055 | 4:-77241311 | MsG0480022831.01.T01:three_prime_UTR |
| GGTGATGAGATGGAGGGAGA+TGG | 0.442415 | 4:-77242515 | MsG0480022831.01.T01:CDS |
| GTGTTGTCTGATGATCCTAT+TGG | 0.454473 | 4:+77242680 | None:intergenic |
| AGATGGGGATATGGGAGTGC+TGG | 0.457752 | 4:-77242498 | MsG0480022831.01.T01:CDS |
| AGTAGGCTGTAGTCAAAATC+AGG | 0.460053 | 4:-77241516 | MsG0480022831.01.T01:three_prime_UTR |
| ATGCCAACCAACTCGAGAAA+TGG | 0.461019 | 4:-77242554 | MsG0480022831.01.T01:CDS |
| TTATTGCTGTTTACCTTGGT+GGG | 0.467259 | 4:+77242344 | None:intergenic |
| CTTCCATCTGGGTCACCAAA+AGG | 0.470625 | 4:+77241930 | None:intergenic |
| GGCACCAATTGTCTCTCAAT+TGG | 0.473923 | 4:-77241495 | MsG0480022831.01.T01:three_prime_UTR |
| CAAAGAAGAGAGCAATTGAA+TGG | 0.475530 | 4:-77242401 | MsG0480022831.01.T01:CDS |
| TAACATCATCATCGATAATC+CGG | 0.477440 | 4:+77241858 | None:intergenic |
| CGGTGGAGGTGATGAGATGG+AGG | 0.480339 | 4:-77242522 | MsG0480022831.01.T01:CDS |
| GTCTCTCAATTGGTACTGAC+AGG | 0.483097 | 4:-77241485 | MsG0480022831.01.T01:three_prime_UTR |
| CCAACATGTCCACCTGCAAC+TGG | 0.484887 | 4:+77241755 | None:intergenic |
| TGTTTACCTTGGTGGGACTT+GGG | 0.491389 | 4:+77242351 | None:intergenic |
| GCTTCTGTTGGCAAAGGAAG+AGG | 0.497466 | 4:-77242458 | MsG0480022831.01.T01:CDS |
| AAGAGAACCATTTCTCGAGT+TGG | 0.498637 | 4:+77242547 | None:intergenic |
| GGGAGTGCTGGAATTCAATA+GGG | 0.499086 | 4:-77242486 | MsG0480022831.01.T01:CDS |
| TTTATTGCTGTTTACCTTGG+TGG | 0.500865 | 4:+77242343 | None:intergenic |
| TTTCTGTTCAATAGCAAGGT+TGG | 0.501692 | 4:-77241720 | MsG0480022831.01.T01:three_prime_UTR |
| GTAGTTTCTGTTCAATAGCA+AGG | 0.512852 | 4:-77241724 | MsG0480022831.01.T01:three_prime_UTR |
| CTGAGAGCTGGAGGCTGTGG+AGG | 0.518825 | 4:+77242611 | None:intergenic |
| GGAGAAGAAAAGACATGGGA+GGG | 0.519783 | 4:-77242009 | MsG0480022831.01.T01:CDS |
| GACTACAGCCTACTTGTATG+TGG | 0.520235 | 4:+77241525 | None:intergenic |
| ATGCAAGTGCTATAGCCAAC+AGG | 0.522366 | 4:-77241585 | MsG0480022831.01.T01:three_prime_UTR |
| TCAACTGTTTCAGAGGAAGA+AGG | 0.522588 | 4:-77241832 | MsG0480022831.01.T01:three_prime_UTR |
| TCCACAGCCTCCAGCTCTCA+GGG | 0.522645 | 4:-77242609 | MsG0480022831.01.T01:CDS |
| TGATGAGATGGAGGGAGATG+GGG | 0.524823 | 4:-77242513 | MsG0480022831.01.T01:CDS |
| GAGCTGGAGGCTGTGGAGGA+AGG | 0.524927 | 4:+77242615 | None:intergenic |
| AATAGGGTCACTGCTTCTGT+TGG | 0.528001 | 4:-77242470 | MsG0480022831.01.T01:CDS |
| TGAAACAATTCCCTGAGAGC+TGG | 0.529234 | 4:+77242599 | None:intergenic |
| CCATAACATCAATGACCTGT+TGG | 0.536126 | 4:+77241570 | None:intergenic |
| GAGGTTCTTATCTTCCATCT+GGG | 0.539256 | 4:+77241919 | None:intergenic |
| AGTACCAATTGAGAGACAAT+TGG | 0.541240 | 4:+77241491 | None:intergenic |
| GGCTGTGGAGGAAGGTTCAA+AGG | 0.549237 | 4:+77242623 | None:intergenic |
| GAACCATTTCTCGAGTTGGT+TGG | 0.554382 | 4:+77242551 | None:intergenic |
| TGGAAAGTACAAAATCTTGA+GGG | 0.560743 | 4:-77242381 | MsG0480022831.01.T01:CDS |
| GTTACAATCAACTGTTTCAG+AGG | 0.568523 | 4:-77241839 | MsG0480022831.01.T01:three_prime_UTR |
| GTTATAGTAAGAATTTCATA+GGG | 0.568622 | 4:-77241429 | MsG0480022831.01.T01:three_prime_UTR |
| ATGGAAAGTACAAAATCTTG+AGG | 0.570741 | 4:-77242382 | MsG0480022831.01.T01:CDS |
| TCACTGATGCAGGTAAATGA+AGG | 0.574645 | 4:-77241619 | MsG0480022831.01.T01:intron |
| AAGAACGTGAGGTTGATGTC+CGG | 0.574934 | 4:-77241877 | MsG0480022831.01.T01:three_prime_UTR |
| ACTGAAGTCATCCAAAACCT+TGG | 0.575165 | 4:+77241788 | None:intergenic |
| GTCACTGCTTCTGTTGGCAA+AGG | 0.580434 | 4:-77242464 | MsG0480022831.01.T01:CDS |
| TTTCGGTGGAGGTGATGAGA+TGG | 0.581094 | 4:-77242525 | MsG0480022831.01.T01:CDS |
| ACTGATAGAGCATCAGTGGT+TGG | 0.582304 | 4:-77242092 | MsG0480022831.01.T01:CDS |
| AACAATTCCCTGAGAGCTGG+AGG | 0.583698 | 4:+77242602 | None:intergenic |
| TGGATTTCCTCTGCACCATG+AGG | 0.587108 | 4:+77241900 | None:intergenic |
| GAAGGTTCAAAGGATATAGC+GGG | 0.589332 | 4:+77242633 | None:intergenic |
| TATGGACCACAATATGCGGC+AGG | 0.589543 | 4:-77241552 | MsG0480022831.01.T01:three_prime_UTR |
| TGGAGAAGAAAAGACATGGG+AGG | 0.590953 | 4:-77242010 | MsG0480022831.01.T01:CDS |
| GGAAGACCTGCCGCATATTG+TGG | 0.601148 | 4:+77241546 | None:intergenic |
| CAGGTCTTCCACATACAAGT+AGG | 0.601555 | 4:-77241533 | MsG0480022831.01.T01:three_prime_UTR |
| GAATGAACTGAAATTATTGG+TGG | 0.601922 | 4:-77242030 | MsG0480022831.01.T01:CDS |
| GAATTTCATAGGGAACATCC+AGG | 0.609827 | 4:-77241419 | MsG0480022831.01.T01:three_prime_UTR |
| AGACAACACAAGCGGATCAT+CGG | 0.616516 | 4:-77242666 | MsG0480022831.01.T01:CDS |
| GCAGACTGATAGAGCATCAG+TGG | 0.620695 | 4:-77242096 | MsG0480022831.01.T01:intron |
| TTGGTGGAGAAGAAAAGACA+TGG | 0.622445 | 4:-77242014 | MsG0480022831.01.T01:CDS |
| ATAAGAACCTCATGGTGCAG+AGG | 0.626424 | 4:-77241907 | MsG0480022831.01.T01:exon |
| TGGTGGAGAAGAAAAGACAT+GGG | 0.628796 | 4:-77242013 | MsG0480022831.01.T01:CDS |
| CCAGTTGCAGGTGGACATGT+TGG | 0.632342 | 4:-77241755 | MsG0480022831.01.T01:three_prime_UTR |
| TGTCTGATGATCCTATTGGA+AGG | 0.634988 | 4:+77242684 | None:intergenic |
| GATGGAAGATAAGAACCTCA+TGG | 0.642077 | 4:-77241915 | MsG0480022831.01.T01:exon |
| GGTGGAGGTGATGAGATGGA+GGG | 0.644636 | 4:-77242521 | MsG0480022831.01.T01:CDS |
| GGAACTTCACCAGTTGCAGG+TGG | 0.646379 | 4:-77241764 | MsG0480022831.01.T01:three_prime_UTR |
| GGAAGGTTCAAAGGATATAG+CGG | 0.647570 | 4:+77242632 | None:intergenic |
| TCTGTTGGCAAAGGAAGAGG+AGG | 0.650064 | 4:-77242455 | MsG0480022831.01.T01:CDS |
| ATGTTATGGACCACAATATG+CGG | 0.651947 | 4:-77241556 | MsG0480022831.01.T01:three_prime_UTR |
| GAGGAAATCCAAAGAACGTG+AGG | 0.655972 | 4:-77241888 | MsG0480022831.01.T01:three_prime_UTR |
| TTGTTTCAATCTCTGCCTCG+AGG | 0.665573 | 4:-77242584 | MsG0480022831.01.T01:CDS |
| GGATCATCAGACAACACAAG+CGG | 0.678009 | 4:-77242674 | MsG0480022831.01.T01:CDS |
| TCTCATCCCAAGTCCCACCA+AGG | 0.687512 | 4:-77242357 | MsG0480022831.01.T01:intron |
| GTTGGCATGCTATAGCCTCG+AGG | 0.726151 | 4:+77242569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAGATAAAATTATACA+TGG | + | Chr4:77241677-77241696 | None:intergenic | 15.0% |
| !!! | TTTGGTTTATATAAACTATA+AGG | - | Chr4:77242330-77242349 | MsG0480022831.01.T01:intron | 15.0% |
| !! | AGTTATAGTAAGAATTTCAT+AGG | - | Chr4:77242544-77242563 | MsG0480022831.01.T01:CDS | 20.0% |
| !! | GTTATAGTAAGAATTTCATA+GGG | - | Chr4:77242545-77242564 | MsG0480022831.01.T01:CDS | 20.0% |
| !! | TAGAATCATTACATTTGATT+TGG | - | Chr4:77242312-77242331 | MsG0480022831.01.T01:intron | 20.0% |
| !!! | ATTGTCAGGATATTTTATAT+GGG | - | Chr4:77242677-77242696 | MsG0480022831.01.T01:CDS | 20.0% |
| !!! | CTATTTGTTACAATGATTAA+CGG | - | Chr4:77241839-77241858 | MsG0480022831.01.T01:three_prime_UTR | 20.0% |
| !!! | TATTGTCAGGATATTTTATA+TGG | - | Chr4:77242676-77242695 | MsG0480022831.01.T01:CDS | 20.0% |
| !!! | TTGAGTCTTGAATTATTTTA+AGG | - | Chr4:77241737-77241756 | MsG0480022831.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTTTATTTGGTACTTTG+TGG | - | Chr4:77242619-77242638 | MsG0480022831.01.T01:CDS | 20.0% |
| ! | AAGACTCAACATATATCAAT+TGG | + | Chr4:77241726-77241745 | None:intergenic | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | - | Chr4:77241941-77241960 | MsG0480022831.01.T01:CDS | 25.0% |
| ! | ATAAAAAAACACACACAGTA+AGG | + | Chr4:77242608-77242627 | None:intergenic | 25.0% |
| ! | TAGAGATTCAAATTGTGAAA+CGG | + | Chr4:77241822-77241841 | None:intergenic | 25.0% |
| ! | TTTGATGCAAAATTATTGTC+AGG | - | Chr4:77242663-77242682 | MsG0480022831.01.T01:CDS | 25.0% |
| !!! | AATATTGTTGTGTCACTTAT+TGG | - | Chr4:77241785-77241804 | MsG0480022831.01.T01:three_prime_UTR | 25.0% |
| !!! | ACTGTGTGTGTTTTTTTATT+TGG | - | Chr4:77242609-77242628 | MsG0480022831.01.T01:CDS | 25.0% |
| !!! | ATTTATATTTTAGCATCTCC+TGG | + | Chr4:77242576-77242595 | None:intergenic | 25.0% |
| GAATGAACTGAAATTATTGG+TGG | - | Chr4:77241944-77241963 | MsG0480022831.01.T01:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | + | Chr4:77242119-77242138 | None:intergenic | 30.0% | |
| TTTCTCAGTTGCAAAATGTT+TGG | + | Chr4:77241553-77241572 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | - | Chr4:77241592-77241611 | MsG0480022831.01.T01:three_prime_UTR | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | - | Chr4:77241593-77241612 | MsG0480022831.01.T01:three_prime_UTR | 30.0% |
| !! | ATGTTTATTGCTGTTTACCT+TGG | + | Chr4:77241637-77241656 | None:intergenic | 30.0% |
| AGTACCAATTGAGAGACAAT+TGG | + | Chr4:77242486-77242505 | None:intergenic | 35.0% | |
| ATCAATTGGCAACAGAAAAG+TGG | + | Chr4:77241712-77241731 | None:intergenic | 35.0% | |
| ATGTTATGGACCACAATATG+CGG | - | Chr4:77242418-77242437 | MsG0480022831.01.T01:CDS | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+TGG | - | Chr4:77241573-77241592 | MsG0480022831.01.T01:three_prime_UTR | 35.0% | |
| GTAGTTTCTGTTCAATAGCA+AGG | - | Chr4:77242250-77242269 | MsG0480022831.01.T01:intron | 35.0% | |
| GTTACAATCAACTGTTTCAG+AGG | - | Chr4:77242135-77242154 | MsG0480022831.01.T01:intron | 35.0% | |
| TTTCTGTTCAATAGCAAGGT+TGG | - | Chr4:77242254-77242273 | MsG0480022831.01.T01:intron | 35.0% | |
| ! | AGCTGTAACATAAAGCCTTT+TGG | - | Chr4:77242029-77242048 | MsG0480022831.01.T01:CDS | 35.0% |
| ! | CAATGATTAACGGTCAGTTT+TGG | - | Chr4:77241849-77241868 | MsG0480022831.01.T01:three_prime_UTR | 35.0% |
| ! | TCGAGAAATGGTTCTCTTTT+CGG | - | Chr4:77241432-77241451 | MsG0480022831.01.T01:three_prime_UTR | 35.0% |
| !! | TTATTGCTGTTTACCTTGGT+GGG | + | Chr4:77241633-77241652 | None:intergenic | 35.0% |
| !! | TTTATTGCTGTTTACCTTGG+TGG | + | Chr4:77241634-77241653 | None:intergenic | 35.0% |
| AAGAGAACCATTTCTCGAGT+TGG | + | Chr4:77241430-77241449 | None:intergenic | 40.0% | |
| ACTGAAGTCATCCAAAACCT+TGG | + | Chr4:77242189-77242208 | None:intergenic | 40.0% | |
| AGTAGGCTGTAGTCAAAATC+AGG | - | Chr4:77242458-77242477 | MsG0480022831.01.T01:CDS | 40.0% | |
| CCAACAGGTCATTGATGTTA+TGG | - | Chr4:77242404-77242423 | MsG0480022831.01.T01:CDS | 40.0% | |
| CCATAACATCAATGACCTGT+TGG | + | Chr4:77242407-77242426 | None:intergenic | 40.0% | |
| GAAGGTTCAAAGGATATAGC+GGG | + | Chr4:77241344-77241363 | None:intergenic | 40.0% | |
| GAATTTCATAGGGAACATCC+AGG | - | Chr4:77242555-77242574 | MsG0480022831.01.T01:CDS | 40.0% | |
| GAGGTTCTTATCTTCCATCT+GGG | + | Chr4:77242058-77242077 | None:intergenic | 40.0% | |
| GATGGAAGATAAGAACCTCA+TGG | - | Chr4:77242059-77242078 | MsG0480022831.01.T01:CDS | 40.0% | |
| GGAAGGTTCAAAGGATATAG+CGG | + | Chr4:77241345-77241364 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | + | Chr4:77241297-77241316 | None:intergenic | 40.0% | |
| TCAACTGTTTCAGAGGAAGA+AGG | - | Chr4:77242142-77242161 | MsG0480022831.01.T01:intron | 40.0% | |
| TCACTGATGCAGGTAAATGA+AGG | - | Chr4:77242355-77242374 | MsG0480022831.01.T01:intron | 40.0% | |
| TGAGGTTCTTATCTTCCATC+TGG | + | Chr4:77242059-77242078 | None:intergenic | 40.0% | |
| TGGTGGAGAAGAAAAGACAT+GGG | - | Chr4:77241961-77241980 | MsG0480022831.01.T01:CDS | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | + | Chr4:77241293-77241312 | None:intergenic | 40.0% | |
| TTGGTGGAGAAGAAAAGACA+TGG | - | Chr4:77241960-77241979 | MsG0480022831.01.T01:CDS | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | - | Chr4:77241279-77241298 | MsG0480022831.01.T01:three_prime_UTR | 40.0% | |
| ! | AGAAATGGTTCTCTTTTCGG+TGG | - | Chr4:77241435-77241454 | MsG0480022831.01.T01:three_prime_UTR | 40.0% |
| !!! | AGGTTTTGGATGACTTCAGT+TGG | - | Chr4:77242189-77242208 | MsG0480022831.01.T01:intron | 40.0% |
| AATAGGGTCACTGCTTCTGT+TGG | - | Chr4:77241504-77241523 | MsG0480022831.01.T01:three_prime_UTR | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | - | Chr4:77241308-77241327 | MsG0480022831.01.T01:three_prime_UTR | 45.0% | |
| ATAAGAACCTCATGGTGCAG+AGG | - | Chr4:77242067-77242086 | MsG0480022831.01.T01:CDS | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | - | Chr4:77242389-77242408 | MsG0480022831.01.T01:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | - | Chr4:77241420-77241439 | MsG0480022831.01.T01:three_prime_UTR | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | + | Chr4:77241708-77241727 | None:intergenic | 45.0% | |
| CAGGTCTTCCACATACAAGT+AGG | - | Chr4:77242441-77242460 | MsG0480022831.01.T01:CDS | 45.0% | |
| GACATCAACCTCACGTTCTT+TGG | + | Chr4:77242097-77242116 | None:intergenic | 45.0% | |
| GACTACAGCCTACTTGTATG+TGG | + | Chr4:77242452-77242471 | None:intergenic | 45.0% | |
| GAGGAAATCCAAAGAACGTG+AGG | - | Chr4:77242086-77242105 | MsG0480022831.01.T01:CDS | 45.0% | |
| GGAGAAGAAAAGACATGGGA+GGG | - | Chr4:77241965-77241984 | MsG0480022831.01.T01:CDS | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | - | Chr4:77241300-77241319 | MsG0480022831.01.T01:three_prime_UTR | 45.0% | |
| GGCACCAATTGTCTCTCAAT+TGG | - | Chr4:77242479-77242498 | MsG0480022831.01.T01:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | + | Chr4:77241378-77241397 | None:intergenic | 45.0% | |
| TGGAGAAGAAAAGACATGGG+AGG | - | Chr4:77241964-77241983 | MsG0480022831.01.T01:CDS | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | + | Chr4:77241626-77241645 | None:intergenic | 45.0% | |
| TTGTTTCAATCTCTGCCTCG+AGG | - | Chr4:77241390-77241409 | MsG0480022831.01.T01:three_prime_UTR | 45.0% | |
| ! | AATGGTTCTCTTTTCGGTGG+AGG | - | Chr4:77241438-77241457 | MsG0480022831.01.T01:three_prime_UTR | 45.0% |
| ! | ACTGATAGAGCATCAGTGGT+TGG | - | Chr4:77241882-77241901 | MsG0480022831.01.T01:three_prime_UTR | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | - | Chr4:77242175-77242194 | MsG0480022831.01.T01:intron | 45.0% |
| !! | AAGAACGTGAGGTTGATGTC+CGG | - | Chr4:77242097-77242116 | MsG0480022831.01.T01:intron | 45.0% |
| !! | CTATAAGGTGTCACTGATGC+AGG | - | Chr4:77242345-77242364 | MsG0480022831.01.T01:intron | 45.0% |
| !! | GAACCATTTCTCGAGTTGGT+TGG | + | Chr4:77241426-77241445 | None:intergenic | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | - | Chr4:77241488-77241507 | MsG0480022831.01.T01:three_prime_UTR | 45.0% |
| !! | GTCTCTCAATTGGTACTGAC+AGG | - | Chr4:77242489-77242508 | MsG0480022831.01.T01:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | - | Chr4:77241487-77241506 | MsG0480022831.01.T01:three_prime_UTR | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | - | Chr4:77242169-77242188 | MsG0480022831.01.T01:intron | 45.0% |
| AACAATTCCCTGAGAGCTGG+AGG | + | Chr4:77241375-77241394 | None:intergenic | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | - | Chr4:77241468-77241487 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| CTGTTTACCTTGGTGGGACT+TGG | + | Chr4:77241627-77241646 | None:intergenic | 50.0% | |
| CTTCCATCTGGGTCACCAAA+AGG | + | Chr4:77242047-77242066 | None:intergenic | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | - | Chr4:77241516-77241535 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | - | Chr4:77241510-77241529 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | - | Chr4:77241460-77241479 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| GTTGGAACTTCACCAGTTGC+AGG | - | Chr4:77242207-77242226 | MsG0480022831.01.T01:intron | 50.0% | |
| TATGGACCACAATATGCGGC+AGG | - | Chr4:77242422-77242441 | MsG0480022831.01.T01:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | - | Chr4:77241519-77241538 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | - | Chr4:77241461-77241480 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| TGGATTTCCTCTGCACCATG+AGG | + | Chr4:77242077-77242096 | None:intergenic | 50.0% | |
| TTTCGGTGGAGGTGATGAGA+TGG | - | Chr4:77241449-77241468 | MsG0480022831.01.T01:three_prime_UTR | 50.0% | |
| ! | GCAGACTGATAGAGCATCAG+TGG | - | Chr4:77241878-77241897 | MsG0480022831.01.T01:three_prime_UTR | 50.0% |
| !! | AAGCCTTTTGGTGACCCAGA+TGG | - | Chr4:77242041-77242060 | MsG0480022831.01.T01:CDS | 50.0% |
| CCAACATGTCCACCTGCAAC+TGG | + | Chr4:77242222-77242241 | None:intergenic | 55.0% | |
| CCAGTTGCAGGTGGACATGT+TGG | - | Chr4:77242219-77242238 | MsG0480022831.01.T01:intron | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | - | Chr4:77241467-77241486 | MsG0480022831.01.T01:three_prime_UTR | 55.0% | |
| GGAACTTCACCAGTTGCAGG+TGG | - | Chr4:77242210-77242229 | MsG0480022831.01.T01:intron | 55.0% | |
| GGAAGACCTGCCGCATATTG+TGG | + | Chr4:77242431-77242450 | None:intergenic | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | + | Chr4:77241354-77241373 | None:intergenic | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | - | Chr4:77241459-77241478 | MsG0480022831.01.T01:three_prime_UTR | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | - | Chr4:77241453-77241472 | MsG0480022831.01.T01:three_prime_UTR | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | + | Chr4:77241408-77241427 | None:intergenic | 55.0% | |
| TCTCATCCCAAGTCCCACCA+AGG | - | Chr4:77241617-77241636 | MsG0480022831.01.T01:intron | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | - | Chr4:77241476-77241495 | MsG0480022831.01.T01:three_prime_UTR | 55.0% |
| CGGTGGAGGTGATGAGATGG+AGG | - | Chr4:77241452-77241471 | MsG0480022831.01.T01:three_prime_UTR | 60.0% | |
| TCCACAGCCTCCAGCTCTCA+GGG | - | Chr4:77241365-77241384 | MsG0480022831.01.T01:three_prime_UTR | 60.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | - | Chr4:77241364-77241383 | MsG0480022831.01.T01:three_prime_UTR | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | + | Chr4:77241366-77241385 | None:intergenic | 65.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | + | Chr4:77241362-77241381 | None:intergenic | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | + | Chr4:77241369-77241388 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 77241273 | 77242723 | 77241273 | ID=MsG0480022831.01;Name=MsG0480022831.01 |
| Chr4 | mRNA | 77241273 | 77242723 | 77241273 | ID=MsG0480022831.01.T01;Parent=MsG0480022831.01;Name=MsG0480022831.01.T01;_AED=0.19;_eAED=0.19;_QI=0|1|0.66|1|0.5|0.33|3|572|184 |
| Chr4 | exon | 77241273 | 77241629 | 77241273 | ID=MsG0480022831.01.T01:exon:4785;Parent=MsG0480022831.01.T01 |
| Chr4 | exon | 77241711 | 77242114 | 77241711 | ID=MsG0480022831.01.T01:exon:4784;Parent=MsG0480022831.01.T01 |
| Chr4 | exon | 77242358 | 77242723 | 77242358 | ID=MsG0480022831.01.T01:exon:4783;Parent=MsG0480022831.01.T01 |
| Chr4 | CDS | 77242358 | 77242723 | 77242358 | ID=MsG0480022831.01.T01:cds;Parent=MsG0480022831.01.T01 |
| Chr4 | CDS | 77241926 | 77242114 | 77241926 | ID=MsG0480022831.01.T01:cds;Parent=MsG0480022831.01.T01 |
| Chr4 | three_prime_UTR | 77241711 | 77241925 | 77241711 | ID=MsG0480022831.01.T01:three_prime_utr;Parent=MsG0480022831.01.T01 |
| Chr4 | three_prime_UTR | 77241273 | 77241629 | 77241273 | ID=MsG0480022831.01.T01:three_prime_utr;Parent=MsG0480022831.01.T01 |
| Gene Sequence |
| Protein sequence |
