AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023456.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023456.01.T03 MTR_8g093500 93.776 241 13 1 1 239 21 261 1.76e-145 407
MsG0480023456.01.T03 MTR_3g101810 73.958 96 25 0 60 155 139 234 5.84e-47 157
MsG0480023456.01.T03 MTR_5g017210 64.545 110 39 0 60 169 105 214 1.33e-37 132
MsG0480023456.01.T03 MTR_8g015450 60.577 104 36 2 58 156 289 392 7.26e-29 113
MsG0480023456.01.T03 MTR_2g100490 62.105 95 35 1 63 156 260 354 8.42e-27 107
MsG0480023456.01.T03 MTR_7g069590 67.857 56 18 0 98 153 32 87 1.28e-20 85.5
MsG0480023456.01.T03 MTR_5g079500 45.455 99 52 2 58 154 182 280 1.83e-19 85.9
MsG0480023456.01.T03 MTR_1g106460 41.176 102 59 1 56 156 201 302 7.21e-19 84.3
MsG0480023456.01.T03 MTR_1g018090 66.071 56 19 0 101 156 283 338 7.61e-19 84.7
MsG0480023456.01.T03 MTR_5g005110 66.071 56 19 0 101 156 233 288 7.89e-19 84.3
MsG0480023456.01.T03 MTR_1g106470 66.071 56 19 0 101 156 205 260 2.70e-18 82.0
MsG0480023456.01.T03 MTR_3g103030 60.606 66 25 1 92 156 228 293 6.71e-18 81.6
MsG0480023456.01.T03 MTR_4g131160 50.667 75 37 0 80 154 184 258 1.67e-15 75.5
MsG0480023456.01.T03 MTR_4g131160 50.667 75 37 0 80 154 187 261 1.79e-15 75.5
MsG0480023456.01.T03 MTR_1g106480 54.237 59 27 0 96 154 73 131 9.32e-15 70.1
MsG0480023456.01.T03 MTR_1g080890 50.000 70 35 0 85 154 186 255 1.76e-13 69.3
MsG0480023456.01.T03 MTR_2g067000 58.491 53 22 0 103 155 168 220 2.14e-13 68.6
MsG0480023456.01.T03 MTR_1g060700 59.259 54 22 0 102 155 357 410 2.53e-13 69.3
MsG0480023456.01.T03 MTR_2g089070 52.632 57 27 0 102 158 146 202 2.95e-13 68.2
MsG0480023456.01.T03 MTR_4g033295 57.143 56 23 1 102 156 128 183 1.05e-11 62.4
MsG0480023456.01.T03 MTR_4g033295 59.259 54 21 1 102 154 128 181 2.79e-11 61.2
MsG0480023456.01.T02 MTR_8g093500 94.253 261 13 1 1 259 1 261 1.33e-161 449
MsG0480023456.01.T02 MTR_3g101810 73.958 96 25 0 80 175 139 234 5.29e-47 158
MsG0480023456.01.T02 MTR_5g017210 64.545 110 39 0 80 189 105 214 1.41e-37 132
MsG0480023456.01.T02 MTR_8g015450 61.905 105 33 3 78 176 289 392 8.93e-29 113
MsG0480023456.01.T02 MTR_2g100490 60.606 99 38 1 79 176 256 354 9.63e-27 107
MsG0480023456.01.T02 MTR_7g069590 67.857 56 18 0 118 173 32 87 1.55e-20 85.9
MsG0480023456.01.T02 MTR_5g079500 45.455 99 52 2 78 174 182 280 2.07e-19 86.3
MsG0480023456.01.T02 MTR_1g106460 41.176 102 59 1 76 176 201 302 9.10e-19 84.7
MsG0480023456.01.T02 MTR_5g005110 56.757 74 31 1 104 176 215 288 1.03e-18 84.3
MsG0480023456.01.T02 MTR_1g018090 66.071 56 19 0 121 176 283 338 1.14e-18 84.7
MsG0480023456.01.T02 MTR_1g106470 66.071 56 19 0 121 176 205 260 3.81e-18 82.4
MsG0480023456.01.T02 MTR_3g103030 60.606 66 25 1 112 176 228 293 8.26e-18 81.6
MsG0480023456.01.T02 MTR_4g131160 50.667 75 37 0 100 174 184 258 1.60e-15 75.9
MsG0480023456.01.T02 MTR_4g131160 50.667 75 37 0 100 174 187 261 1.68e-15 75.9
MsG0480023456.01.T02 MTR_1g106480 54.237 59 27 0 116 174 73 131 1.16e-14 70.1
MsG0480023456.01.T02 MTR_1g080890 50.000 70 35 0 105 174 186 255 1.57e-13 69.7
MsG0480023456.01.T02 MTR_2g067000 58.491 53 22 0 123 175 168 220 2.45e-13 68.9
MsG0480023456.01.T02 MTR_1g060700 59.259 54 22 0 122 175 357 410 3.50e-13 69.3
MsG0480023456.01.T02 MTR_2g089070 52.632 57 27 0 122 178 146 202 4.31e-13 68.2
MsG0480023456.01.T02 MTR_4g033295 56.140 57 24 1 122 177 128 184 1.47e-11 62.0
MsG0480023456.01.T02 MTR_4g033295 59.259 54 21 1 122 174 128 181 4.00e-11 61.2
MsG0480023456.01.T05 MTR_8g093500 96.330 109 4 0 1 109 153 261 5.00e-66 201
MsG0480023456.01.T04 MTR_8g093500 96.635 208 5 1 1 206 54 261 1.14e-148 414
MsG0480023456.01.T04 MTR_3g101810 73.958 96 25 0 27 122 139 234 2.00e-47 157
MsG0480023456.01.T04 MTR_5g017210 64.545 110 39 0 27 136 105 214 4.74e-38 132
MsG0480023456.01.T04 MTR_8g015450 60.577 104 36 2 25 123 289 392 3.09e-29 113
MsG0480023456.01.T04 MTR_2g100490 62.105 95 35 1 30 123 260 354 4.58e-27 106
MsG0480023456.01.T04 MTR_7g069590 67.857 56 18 0 65 120 32 87 5.90e-21 85.5
MsG0480023456.01.T04 MTR_5g079500 45.455 99 52 2 25 121 182 280 9.78e-20 85.5
MsG0480023456.01.T04 MTR_1g018090 66.071 56 19 0 68 123 283 338 2.82e-19 85.1
MsG0480023456.01.T04 MTR_5g005110 66.071 56 19 0 68 123 233 288 3.35e-19 84.3
MsG0480023456.01.T04 MTR_1g106460 41.176 102 59 1 23 123 201 302 3.82e-19 84.3
MsG0480023456.01.T04 MTR_1g106470 66.071 56 19 0 68 123 205 260 1.25e-18 82.0
MsG0480023456.01.T04 MTR_3g103030 60.606 66 25 1 59 123 228 293 3.60e-18 81.3
MsG0480023456.01.T04 MTR_4g131160 40.179 112 62 1 10 121 152 258 1.03e-15 75.1
MsG0480023456.01.T04 MTR_4g131160 50.667 75 37 0 47 121 187 261 1.16e-15 75.1
MsG0480023456.01.T04 MTR_1g106480 54.237 59 27 0 63 121 73 131 3.92e-15 70.1
MsG0480023456.01.T04 MTR_1g080890 50.000 70 35 0 52 121 186 255 1.21e-13 68.9
MsG0480023456.01.T04 MTR_2g067000 58.491 53 22 0 70 122 168 220 1.28e-13 68.6
MsG0480023456.01.T04 MTR_2g089070 52.632 57 27 0 69 125 146 202 1.31e-13 68.2
MsG0480023456.01.T04 MTR_1g060700 59.259 54 22 0 69 122 357 410 1.38e-13 69.3
MsG0480023456.01.T04 MTR_4g033295 57.143 56 23 1 69 123 128 183 5.59e-12 62.4
MsG0480023456.01.T04 MTR_4g033295 59.259 54 21 1 69 121 128 181 1.58e-11 61.2
MsG0480023456.01.T01 MTR_8g093500 86.628 172 5 1 1 154 90 261 1.26e-105 303
MsG0480023456.01.T01 MTR_3g101810 78.409 88 19 0 1 88 147 234 3.66e-46 152
MsG0480023456.01.T01 MTR_5g017210 67.647 102 33 0 1 102 113 214 7.29e-37 127
MsG0480023456.01.T01 MTR_8g015450 65.957 94 26 2 1 89 300 392 6.45e-29 110
MsG0480023456.01.T01 MTR_2g100490 64.444 90 31 1 1 89 265 354 6.95e-27 104
MsG0480023456.01.T01 MTR_7g069590 67.857 56 18 0 31 86 32 87 1.91e-21 85.1
MsG0480023456.01.T01 MTR_5g079500 53.165 79 35 2 11 87 202 280 3.41e-20 85.1
MsG0480023456.01.T01 MTR_1g018090 51.250 80 23 1 34 113 283 346 7.58e-20 84.7
MsG0480023456.01.T01 MTR_5g005110 66.071 56 19 0 34 89 233 288 1.20e-19 84.0
MsG0480023456.01.T01 MTR_1g106460 55.072 69 31 0 21 89 234 302 1.40e-19 83.6
MsG0480023456.01.T01 MTR_1g106470 51.250 80 23 1 34 113 205 268 4.64e-19 81.6
MsG0480023456.01.T01 MTR_3g103030 48.889 90 29 2 25 113 228 301 1.00e-18 81.3
MsG0480023456.01.T01 MTR_4g131160 50.667 75 37 0 13 87 184 258 5.98e-16 73.9
MsG0480023456.01.T01 MTR_4g131160 50.667 75 37 0 13 87 187 261 6.14e-16 73.9
MsG0480023456.01.T01 MTR_1g106480 68.889 45 14 0 43 87 87 131 1.81e-15 69.7
MsG0480023456.01.T01 MTR_2g067000 58.491 53 22 0 36 88 168 220 2.85e-14 68.9
MsG0480023456.01.T01 MTR_1g080890 50.000 70 35 0 18 87 186 255 4.33e-14 68.6
MsG0480023456.01.T01 MTR_2g089070 52.632 57 27 0 35 91 146 202 6.04e-14 67.8
MsG0480023456.01.T01 MTR_1g060700 59.259 54 22 0 35 88 357 410 1.11e-13 67.8
MsG0480023456.01.T01 MTR_4g033295 57.143 56 23 1 35 89 128 183 3.28e-12 61.6
MsG0480023456.01.T01 MTR_4g033295 59.259 54 21 1 35 87 128 181 6.75e-12 60.8
MsG0480023456.01.T01 MTR_1g084980 50.980 51 25 0 37 87 474 524 1.99e-11 61.2
MsG0480023456.01.T01 MTR_7g110810 45.902 61 29 1 27 87 208 264 2.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023456.01.T03 AT5G09750 81.651 109 13 1 65 166 92 200 1.24e-46 155
MsG0480023456.01.T03 AT4G00120 82.022 89 16 0 67 155 87 175 2.16e-46 153
MsG0480023456.01.T03 AT3G21330 52.632 133 56 1 56 188 233 358 7.67e-38 136
MsG0480023456.01.T03 AT5G67060 75.824 91 22 0 65 155 83 173 4.25e-36 128
MsG0480023456.01.T03 AT5G67060 75.824 91 22 0 65 155 95 185 6.43e-36 127
MsG0480023456.01.T03 AT3G50330 74.725 91 23 0 65 155 92 182 2.04e-35 126
MsG0480023456.01.T03 AT5G01305 64.179 67 24 0 90 156 35 101 3.75e-21 87.4
MsG0480023456.01.T03 AT2G14760 67.857 56 18 0 101 156 246 301 6.18e-19 84.7
MsG0480023456.01.T03 AT5G43175 47.500 80 42 0 77 156 117 196 6.64e-19 82.8
MsG0480023456.01.T03 AT4G33880 67.857 56 18 0 101 156 275 330 7.03e-19 84.7
MsG0480023456.01.T03 AT1G27740 50.704 71 35 0 86 156 161 231 1.13e-17 80.1
MsG0480023456.01.T03 AT1G66470 64.815 54 19 0 101 154 204 257 1.33e-17 80.5
MsG0480023456.01.T03 AT5G37800 52.778 72 26 1 83 154 200 263 1.64e-17 80.5
MsG0480023456.01.T03 AT4G30980 59.091 66 26 1 90 154 127 192 1.94e-16 77.4
MsG0480023456.01.T03 AT4G30980 59.091 66 26 1 90 154 175 240 3.98e-16 77.0
MsG0480023456.01.T03 AT2G24260 62.963 54 20 0 101 154 44 97 4.55e-16 75.5
MsG0480023456.01.T03 AT2G24260 49.333 75 32 1 86 154 126 200 9.25e-16 75.9
MsG0480023456.01.T03 AT2G14760 55.072 69 18 1 101 156 246 314 1.46e-15 75.1
MsG0480023456.01.T03 AT5G58010 52.113 71 33 1 85 154 91 161 5.42e-15 73.2
MsG0480023456.01.T02 AT4G00120 82.022 89 16 0 87 175 87 175 1.85e-46 154
MsG0480023456.01.T02 AT5G09750 81.651 109 13 1 85 186 92 200 2.23e-46 155
MsG0480023456.01.T02 AT3G21330 52.632 133 56 1 76 208 233 358 1.05e-37 136
MsG0480023456.01.T02 AT5G67060 75.824 91 22 0 85 175 83 173 3.30e-36 129
MsG0480023456.01.T02 AT5G67060 75.824 91 22 0 85 175 95 185 5.57e-36 128
MsG0480023456.01.T02 AT3G50330 74.725 91 23 0 85 175 92 182 1.78e-35 127
MsG0480023456.01.T02 AT5G01305 67.742 62 20 0 110 171 35 96 5.41e-21 87.4
MsG0480023456.01.T02 AT2G14760 67.857 56 18 0 121 176 246 301 7.43e-19 84.7
MsG0480023456.01.T02 AT4G33880 67.857 56 18 0 121 176 275 330 8.57e-19 85.1
MsG0480023456.01.T02 AT5G43175 47.500 80 42 0 97 176 117 196 9.28e-19 82.8
MsG0480023456.01.T02 AT5G37800 52.778 72 26 1 103 174 200 263 1.55e-17 80.9
MsG0480023456.01.T02 AT1G27740 50.704 71 35 0 106 176 161 231 1.69e-17 80.1
MsG0480023456.01.T02 AT1G66470 64.815 54 19 0 121 174 204 257 1.74e-17 80.5
MsG0480023456.01.T02 AT4G30980 59.091 66 26 1 110 174 127 192 1.80e-16 77.8
MsG0480023456.01.T02 AT4G30980 59.091 66 26 1 110 174 175 240 3.27e-16 77.8
MsG0480023456.01.T02 AT2G24260 62.963 54 20 0 121 174 44 97 4.76e-16 75.9
MsG0480023456.01.T02 AT2G24260 49.333 75 32 1 106 174 126 200 1.06e-15 76.3
MsG0480023456.01.T02 AT2G14760 55.072 69 18 1 121 176 246 314 1.44e-15 75.9
MsG0480023456.01.T02 AT5G58010 52.113 71 33 1 105 174 91 161 4.75e-15 73.9
MsG0480023456.01.T04 AT5G09750 81.651 109 13 1 32 133 92 200 4.29e-47 155
MsG0480023456.01.T04 AT4G00120 82.022 89 16 0 34 122 87 175 8.50e-47 153
MsG0480023456.01.T04 AT3G21330 52.632 133 56 1 23 155 233 358 3.90e-38 135
MsG0480023456.01.T04 AT5G67060 75.824 91 22 0 32 122 83 173 1.61e-36 127
MsG0480023456.01.T04 AT5G67060 75.824 91 22 0 32 122 95 185 2.63e-36 127
MsG0480023456.01.T04 AT3G50330 73.913 92 24 0 31 122 91 182 6.84e-36 126
MsG0480023456.01.T04 AT5G01305 64.179 67 24 0 57 123 35 101 1.48e-21 87.4
MsG0480023456.01.T04 AT4G33880 67.857 56 18 0 68 123 275 330 2.66e-19 85.1
MsG0480023456.01.T04 AT2G14760 67.857 56 18 0 68 123 246 301 2.81e-19 84.7
MsG0480023456.01.T04 AT5G43175 47.500 80 42 0 44 123 117 196 3.76e-19 82.4
MsG0480023456.01.T04 AT1G27740 50.704 71 35 0 53 123 161 231 5.37e-18 80.1
MsG0480023456.01.T04 AT1G66470 64.815 54 19 0 68 121 204 257 7.68e-18 80.1
MsG0480023456.01.T04 AT5G37800 52.778 72 26 1 50 121 200 263 9.38e-18 80.1
MsG0480023456.01.T04 AT4G30980 59.091 66 26 1 57 121 127 192 1.26e-16 77.0
MsG0480023456.01.T04 AT4G30980 59.091 66 26 1 57 121 175 240 2.20e-16 77.0
MsG0480023456.01.T04 AT2G24260 62.963 54 20 0 68 121 44 97 2.44e-16 75.5
MsG0480023456.01.T04 AT2G24260 49.333 75 32 1 53 121 126 200 5.59e-16 75.5
MsG0480023456.01.T04 AT2G14760 55.072 69 18 1 68 123 246 314 6.62e-16 75.5
MsG0480023456.01.T04 AT5G58010 52.113 71 33 1 52 121 91 161 3.40e-15 72.8
MsG0480023456.01.T01 AT4G00120 81.818 88 16 0 1 88 88 175 5.93e-47 151
MsG0480023456.01.T01 AT5G09750 81.132 106 13 1 1 99 95 200 1.67e-45 149
MsG0480023456.01.T01 AT3G21330 67.416 89 29 0 1 89 245 333 6.48e-37 130
MsG0480023456.01.T01 AT5G67060 77.273 88 20 0 1 88 86 173 2.78e-36 125
MsG0480023456.01.T01 AT5G67060 77.273 88 20 0 1 88 98 185 5.37e-36 125
MsG0480023456.01.T01 AT3G50330 76.136 88 21 0 1 88 95 182 1.11e-35 124
MsG0480023456.01.T01 AT5G01305 64.179 67 24 0 23 89 35 101 6.52e-22 87.0
MsG0480023456.01.T01 AT5G43175 40.385 104 46 1 10 113 117 204 5.35e-20 83.2
MsG0480023456.01.T01 AT2G14760 52.500 80 22 1 34 113 246 309 6.03e-20 84.7
MsG0480023456.01.T01 AT4G33880 52.500 80 22 1 34 113 275 338 6.04e-20 85.1
MsG0480023456.01.T01 AT1G27740 42.105 95 39 1 19 113 161 239 1.45e-18 80.1
MsG0480023456.01.T01 AT1G66470 64.815 54 19 0 34 87 204 257 2.31e-18 80.1
MsG0480023456.01.T01 AT5G37800 52.778 72 26 1 16 87 200 263 2.97e-18 79.7
MsG0480023456.01.T01 AT4G30980 59.091 66 26 1 23 87 127 192 5.37e-17 76.6
MsG0480023456.01.T01 AT2G24260 62.963 54 20 0 34 87 44 97 7.78e-17 75.1
MsG0480023456.01.T01 AT4G30980 59.091 66 26 1 23 87 175 240 8.24e-17 76.3
MsG0480023456.01.T01 AT2G14760 45.161 93 22 2 34 113 246 322 1.41e-16 75.5
MsG0480023456.01.T01 AT2G24260 49.333 75 32 1 19 87 126 200 1.66e-16 75.5
MsG0480023456.01.T01 AT5G58010 52.113 71 33 1 18 87 91 161 2.06e-15 72.0
MsG0480023456.01.T01 AT1G09530 50.980 51 25 0 37 87 349 399 2.53e-11 61.2
MsG0480023456.01.T01 AT1G09530 50.980 51 25 0 37 87 349 399 2.53e-11 61.2
MsG0480023456.01.T01 AT1G09530 50.980 51 25 0 37 87 349 399 2.53e-11 61.2
MsG0480023456.01.T01 AT1G09530 50.980 51 25 0 37 87 349 399 2.53e-11 61.2
MsG0480023456.01.T01 AT1G09530 50.980 51 25 0 37 87 349 399 2.53e-11 61.2
MsG0480023456.01.T01 AT1G09530 50.980 51 25 0 37 87 349 399 2.53e-11 61.2
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 290 413 6.34e-11 59.7
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 290 413 6.34e-11 59.7
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 290 413 6.34e-11 59.7
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 290 413 6.34e-11 59.7
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 219 342 6.40e-11 59.7
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 219 342 6.40e-11 59.7
MsG0480023456.01.T01 AT2G20180 33.846 130 64 4 37 150 219 342 6.40e-11 59.7

Find 54 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGAATTCTTCTGGAATT+TGG 0.166878 4:+85421486 MsG0480023456.01.T02:CDS
ATGCACTACTAGTATTATTT+TGG 0.196984 4:-85421382 None:intergenic
GGTTCACTCAGTGACATATT+AGG 0.250977 4:+85421560 MsG0480023456.01.T02:CDS
TTGTTATTGTCTCCTTCTTC+TGG 0.266342 4:+85421977 MsG0480023456.01.T01:intron
TGTTCCTGGTGGAACTAAAA+TGG 0.289003 4:+85421802 MsG0480023456.01.T01:CDS
CAAGTTCCTATGAATTCTTC+TGG 0.298023 4:+85421479 MsG0480023456.01.T02:CDS
ATCATGCTGTTGTAGCTATT+TGG 0.316175 4:-85421512 None:intergenic
CTTCTTCTGGTTGTGACGTC+TGG 0.336110 4:+85421990 MsG0480023456.01.T01:intron
GTGGAAGTGAGTAGTAAATT+TGG 0.351622 4:-85422022 None:intergenic
ATTCGAACGTTTCTTCGCTT+TGG 0.353088 4:-85421701 None:intergenic
TGTCTAGCTGCAACACTTTG+TGG 0.381712 4:-85421734 None:intergenic
ATCCTTCAAAGACTTGTTCC+TGG 0.399593 4:+85421788 MsG0480023456.01.T01:CDS
GAAGAACAAGAAGAAGAGTT+AGG 0.401481 4:+85421605 MsG0480023456.01.T02:CDS
AGAAGAGTTAGGAGCTATGA+AGG 0.405429 4:+85421616 MsG0480023456.01.T02:CDS
GTTCACTCAGTGACATATTA+GGG 0.414540 4:+85421561 MsG0480023456.01.T02:CDS
GATCTTGTTGGAGAATAATA+CGG 0.432514 4:-85421451 None:intergenic
AGTAGTAAATTTGGTGCAAA+AGG 0.442540 4:-85422013 None:intergenic
GTTCTTCTACATCTTCGATT+CGG 0.446833 4:-85421589 None:intergenic
TCCGGCGTCAAATTGAATTC+CGG 0.450878 4:-85422071 None:intergenic
CAAATTCCAGAAGAATTCAT+AGG 0.451806 4:-85421485 None:intergenic
CAGAAGAATTCATAGGAACT+TGG 0.471897 4:-85421478 None:intergenic
CACCAGGAACAAGTCTTTGA+AGG 0.481487 4:-85421790 None:intergenic
GAACTTGGTGGTGATCTTGT+TGG 0.483925 4:-85421463 None:intergenic
CTTCTACATCTTCGATTCGG+TGG 0.493447 4:-85421586 None:intergenic
CAAGATTGCAGCTATGCAAC+CGG 0.495861 4:+85421649 MsG0480023456.01.T01:CDS
GCACCACCACCACCTTCATC+AGG 0.499844 4:+85421539 MsG0480023456.01.T02:CDS
GTCCACTGTGGCAGCTGTTG+TGG 0.509617 4:-85422041 None:intergenic
CAGACGTCACAACCAGAAGA+AGG 0.532660 4:-85421989 None:intergenic
TAGCTACAACAGCATGATCA+TGG 0.539866 4:+85421517 MsG0480023456.01.T02:CDS
ATGCTGTTGTAGCTATTTGG+TGG 0.542016 4:-85421509 None:intergenic
GAACCTGATGAAGGTGGTGG+TGG 0.552409 4:-85421542 None:intergenic
ATGAACATGTGAATGTCCTC+CGG 0.556908 4:-85422089 None:intergenic
GGCGTCAAATTGAATTCCGG+TGG 0.574382 4:-85422068 None:intergenic
CAAGAACTTAACATAACGAA+TGG 0.583966 4:-85421849 None:intergenic
TCACATGTTCATGCTTGTGA+AGG 0.591006 4:+85422100 MsG0480023456.01.T01:CDS
GCCACAGTGGACTTACCCAC+CGG 0.591865 4:+85422052 MsG0480023456.01.T01:CDS
AAGAATTCATAGGAACTTGG+TGG 0.592411 4:-85421475 None:intergenic
ACTCACTAATTACCTCATGA+TGG 0.592814 4:-85422138 None:intergenic
GACAATAACAAAGCACTAGG+AGG 0.606861 4:-85421965 None:intergenic
GGAGACAATAACAAAGCACT+AGG 0.609214 4:-85421968 None:intergenic
GTAGTGCATTCACAAGCACT+TGG 0.620694 4:+85421396 MsG0480023456.01.T02:CDS
GGAATTCAATTTGACGCCGG+AGG 0.622262 4:+85422073 MsG0480023456.01.T01:CDS
CTTCAAAGACTTGTTCCTGG+TGG 0.627271 4:+85421791 MsG0480023456.01.T01:CDS
GTTGCTGGGTCGATATCCAC+CGG 0.629556 4:-85421668 None:intergenic
ACCGGAATTCAATTTGACGC+CGG 0.643580 4:+85422070 MsG0480023456.01.T01:CDS
ATCAAGCTTTAACCATCATG+AGG 0.658321 4:+85422126 MsG0480023456.01.T01:CDS
TTAATGCATTGTGATGAAAG+TGG 0.662271 4:-85421935 None:intergenic
TCACTGAGTGAACCTGATGA+AGG 0.669394 4:-85421551 None:intergenic
GATTGCAGCTATGCAACCGG+TGG 0.671341 4:+85421652 MsG0480023456.01.T01:CDS
GCGTCAAATTGAATTCCGGT+GGG 0.674022 4:-85422067 None:intergenic
TTCCACAACAGCTGCCACAG+TGG 0.676021 4:+85422039 MsG0480023456.01.T01:CDS
AGTGAACCTGATGAAGGTGG+TGG 0.679836 4:-85421545 None:intergenic
CTGAGTGAACCTGATGAAGG+TGG 0.711599 4:-85421548 None:intergenic
TCCGGTGGGTAAGTCCACTG+TGG 0.759981 4:-85422053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCACTACTAGTATTATTT+TGG - Chr4:85421385-85421404 None:intergenic 25.0%
CAAATTCCAGAAGAATTCAT+AGG - Chr4:85421488-85421507 None:intergenic 30.0%
CAAGAACTTAACATAACGAA+TGG - Chr4:85421852-85421871 None:intergenic 30.0%
CACTTGGAATCTTGAAAAAA+TGG + Chr4:85421412-85421431 MsG0480023456.01.T02:CDS 30.0%
GATCTTGTTGGAGAATAATA+CGG - Chr4:85421454-85421473 None:intergenic 30.0%
TTAATGCATTGTGATGAAAG+TGG - Chr4:85421938-85421957 None:intergenic 30.0%
!! AGTAGTAAATTTGGTGCAAA+AGG - Chr4:85422016-85422035 None:intergenic 30.0%
!! CTATGAATTCTTCTGGAATT+TGG + Chr4:85421486-85421505 MsG0480023456.01.T02:CDS 30.0%
!!! TGTTGTTGTTGTTGATTTTG+AGG - Chr4:85421905-85421924 None:intergenic 30.0%
AAGAATTCATAGGAACTTGG+TGG - Chr4:85421478-85421497 None:intergenic 35.0%
ACTCACTAATTACCTCATGA+TGG - Chr4:85422141-85422160 None:intergenic 35.0%
ATCATGCTGTTGTAGCTATT+TGG - Chr4:85421515-85421534 None:intergenic 35.0%
CAAGTTCCTATGAATTCTTC+TGG + Chr4:85421479-85421498 MsG0480023456.01.T02:CDS 35.0%
CAGAAGAATTCATAGGAACT+TGG - Chr4:85421481-85421500 None:intergenic 35.0%
GAAGAACAAGAAGAAGAGTT+AGG + Chr4:85421605-85421624 MsG0480023456.01.T02:CDS 35.0%
GTGGAAGTGAGTAGTAAATT+TGG - Chr4:85422025-85422044 None:intergenic 35.0%
GTTCACTCAGTGACATATTA+GGG + Chr4:85421561-85421580 MsG0480023456.01.T02:CDS 35.0%
GTTCTTCTACATCTTCGATT+CGG - Chr4:85421592-85421611 None:intergenic 35.0%
! ATCAAGCTTTAACCATCATG+AGG + Chr4:85422126-85422145 MsG0480023456.01.T01:CDS 35.0%
! TTGTTATTGTCTCCTTCTTC+TGG + Chr4:85421977-85421996 MsG0480023456.01.T01:intron 35.0%
!!! TTGTTGTTGATTTTGAGGAG+TGG - Chr4:85421900-85421919 None:intergenic 35.0%
AGAAGAGTTAGGAGCTATGA+AGG + Chr4:85421616-85421635 MsG0480023456.01.T02:CDS 40.0%
ATGAACATGTGAATGTCCTC+CGG - Chr4:85422092-85422111 None:intergenic 40.0%
ATGCTGTTGTAGCTATTTGG+TGG - Chr4:85421512-85421531 None:intergenic 40.0%
ATTCGAACGTTTCTTCGCTT+TGG - Chr4:85421704-85421723 None:intergenic 40.0%
GGTTCACTCAGTGACATATT+AGG + Chr4:85421560-85421579 MsG0480023456.01.T02:CDS 40.0%
TAGCTACAACAGCATGATCA+TGG + Chr4:85421517-85421536 MsG0480023456.01.T02:CDS 40.0%
TCACATGTTCATGCTTGTGA+AGG + Chr4:85422100-85422119 MsG0480023456.01.T01:CDS 40.0%
TGTTCCTGGTGGAACTAAAA+TGG + Chr4:85421802-85421821 MsG0480023456.01.T01:CDS 40.0%
! ATCCTTCAAAGACTTGTTCC+TGG + Chr4:85421788-85421807 MsG0480023456.01.T01:CDS 40.0%
! GACAATAACAAAGCACTAGG+AGG - Chr4:85421968-85421987 None:intergenic 40.0%
! GGAGACAATAACAAAGCACT+AGG - Chr4:85421971-85421990 None:intergenic 40.0%
!! TTGGTTTTCGAATCGTTGCT+GGG - Chr4:85421685-85421704 None:intergenic 40.0%
!!! GTATCCATTTTAGTTCCACC+AGG - Chr4:85421809-85421828 None:intergenic 40.0%
!!! TTTGGTTTTCGAATCGTTGC+TGG - Chr4:85421686-85421705 None:intergenic 40.0%
ACCGGAATTCAATTTGACGC+CGG + Chr4:85422070-85422089 MsG0480023456.01.T01:CDS 45.0%
CAAGATTGCAGCTATGCAAC+CGG + Chr4:85421649-85421668 MsG0480023456.01.T01:CDS 45.0%
CACCAGGAACAAGTCTTTGA+AGG - Chr4:85421793-85421812 None:intergenic 45.0%
GCGTCAAATTGAATTCCGGT+GGG - Chr4:85422070-85422089 None:intergenic 45.0%
GTAGTGCATTCACAAGCACT+TGG + Chr4:85421396-85421415 MsG0480023456.01.T02:CDS 45.0%
TCACTGAGTGAACCTGATGA+AGG - Chr4:85421554-85421573 None:intergenic 45.0%
TCCGGCGTCAAATTGAATTC+CGG - Chr4:85422074-85422093 None:intergenic 45.0%
TGTCTAGCTGCAACACTTTG+TGG - Chr4:85421737-85421756 None:intergenic 45.0%
! CTTCAAAGACTTGTTCCTGG+TGG + Chr4:85421791-85421810 MsG0480023456.01.T01:CDS 45.0%
!! CTTCTACATCTTCGATTCGG+TGG - Chr4:85421589-85421608 None:intergenic 45.0%
!! GAACTTGGTGGTGATCTTGT+TGG - Chr4:85421466-85421485 None:intergenic 45.0%
AGTGAACCTGATGAAGGTGG+TGG - Chr4:85421548-85421567 None:intergenic 50.0%
CAGACGTCACAACCAGAAGA+AGG - Chr4:85421992-85422011 None:intergenic 50.0%
CTGAGTGAACCTGATGAAGG+TGG - Chr4:85421551-85421570 None:intergenic 50.0%
GGAATTCAATTTGACGCCGG+AGG + Chr4:85422073-85422092 MsG0480023456.01.T01:CDS 50.0%
GGCGTCAAATTGAATTCCGG+TGG - Chr4:85422071-85422090 None:intergenic 50.0%
! CTTCTTCTGGTTGTGACGTC+TGG + Chr4:85421990-85422009 MsG0480023456.01.T01:intron 50.0%
GATTGCAGCTATGCAACCGG+TGG + Chr4:85421652-85421671 MsG0480023456.01.T01:CDS 55.0%
GTTGCTGGGTCGATATCCAC+CGG - Chr4:85421671-85421690 None:intergenic 55.0%
TTCCACAACAGCTGCCACAG+TGG + Chr4:85422039-85422058 MsG0480023456.01.T01:CDS 55.0%
! GAACCTGATGAAGGTGGTGG+TGG - Chr4:85421545-85421564 None:intergenic 55.0%
GCACCACCACCACCTTCATC+AGG + Chr4:85421539-85421558 MsG0480023456.01.T02:CDS 60.0%
GTCCACTGTGGCAGCTGTTG+TGG - Chr4:85422044-85422063 None:intergenic 60.0%
TCCGGTGGGTAAGTCCACTG+TGG - Chr4:85422056-85422075 None:intergenic 60.0%
! GCCACAGTGGACTTACCCAC+CGG + Chr4:85422052-85422071 MsG0480023456.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85421371 85422162 85421371 ID=MsG0480023456.01;Name=MsG0480023456.01
Chr4 mRNA 85421632 85422162 85421632 ID=MsG0480023456.01.T01;Parent=MsG0480023456.01;Name=MsG0480023456.01.T01;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0|0|2|0|158
Chr4 exon 85421632 85421950 85421632 ID=MsG0480023456.01.T01:exon:5838;Parent=MsG0480023456.01.T01
Chr4 exon 85422005 85422162 85422005 ID=MsG0480023456.01.T01:exon:5839;Parent=MsG0480023456.01.T01
Chr4 CDS 85421632 85421950 85421632 ID=MsG0480023456.01.T01:cds;Parent=MsG0480023456.01.T01
Chr4 CDS 85422005 85422162 85422005 ID=MsG0480023456.01.T01:cds;Parent=MsG0480023456.01.T01
Chr4 mRNA 85421371 85422162 85421371 ID=MsG0480023456.01.T02;Parent=MsG0480023456.01;Name=MsG0480023456.01.T02;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|263
Chr4 exon 85421371 85422162 85421371 ID=MsG0480023456.01.T02:exon:5840;Parent=MsG0480023456.01.T02
Chr4 CDS 85421371 85422162 85421371 ID=MsG0480023456.01.T02:cds;Parent=MsG0480023456.01.T02
Chr4 mRNA 85421431 85422162 85421431 ID=MsG0480023456.01.T03;Parent=MsG0480023456.01;Name=MsG0480023456.01.T03;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|243
Chr4 exon 85421431 85422162 85421431 ID=MsG0480023456.01.T03:exon:5841;Parent=MsG0480023456.01.T03
Chr4 CDS 85421431 85422162 85421431 ID=MsG0480023456.01.T03:cds;Parent=MsG0480023456.01.T03
Chr4 mRNA 85421530 85422162 85421530 ID=MsG0480023456.01.T04;Parent=MsG0480023456.01;Name=MsG0480023456.01.T04;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|0|1|0|210
Chr4 exon 85421530 85422162 85421530 ID=MsG0480023456.01.T04:exon:5842;Parent=MsG0480023456.01.T04
Chr4 CDS 85421530 85422162 85421530 ID=MsG0480023456.01.T04:cds;Parent=MsG0480023456.01.T04
Chr4 mRNA 85421821 85422162 85421821 ID=MsG0480023456.01.T05;Parent=MsG0480023456.01;Name=MsG0480023456.01.T05;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|0|1|0|113
Chr4 exon 85421821 85422162 85421821 ID=MsG0480023456.01.T05:exon:5843;Parent=MsG0480023456.01.T05
Chr4 CDS 85421821 85422162 85421821 ID=MsG0480023456.01.T05:cds;Parent=MsG0480023456.01.T05
Gene Sequence

>MsG0480023456.01.T03

ATGGAAACAAATGAACAAAACCGTATTATTCTCCAACAAGATCACCACCAAGTTCCTATGAATTCTTCTGGAATTTGGCCACCAAATAGCTACAACAGCATGATCATGGCACCACCACCACCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCGAATCGAAGATGTAGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGACCCAGCAACGATTCGAAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACTCCTCCTAGTGCTTTGTTATTGTCTCCTTCTTCTGGTTGTGACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCACCGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGAAGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA

>MsG0480023456.01.T02

ATGGAAAATAACCAAAATAATACTAGTAGTGCATTCACAAGCACTTGGAATCTTGAAAAAATGGAAACAAATGAACAAAACCGTATTATTCTCCAACAAGATCACCACCAAGTTCCTATGAATTCTTCTGGAATTTGGCCACCAAATAGCTACAACAGCATGATCATGGCACCACCACCACCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCGAATCGAAGATGTAGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGACCCAGCAACGATTCGAAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACTCCTCCTAGTGCTTTGTTATTGTCTCCTTCTTCTGGTTGTGACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCACCGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGAAGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA

>MsG0480023456.01.T05

ATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACTCCTCCTAGTGCTTTGTTATTGTCTCCTTCTTCTGGTTGTGACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCACCGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGAAGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA

>MsG0480023456.01.T04

ATGATCATGGCACCACCACCACCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCGAATCGAAGATGTAGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGACCCAGCAACGATTCGAAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACTCCTCCTAGTGCTTTGTTATTGTCTCCTTCTTCTGGTTGTGACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCACCGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGAAGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA

>MsG0480023456.01.T01

ATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGACCCAGCAACGATTCGAAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCACCGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGAAGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA

Protein sequence

>MsG0480023456.01.T03

METNEQNRIILQQDHHQVPMNSSGIWPPNSYNSMIMAPPPPSSGSLSDILGIHRIEDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTPPSALLLSPSSGCDVWPFAPNLLLTSTTAATVDLPTGIQFDAGGHSHVHACEGSSSFNHHEVISE*

>MsG0480023456.01.T02

MENNQNNTSSAFTSTWNLEKMETNEQNRIILQQDHHQVPMNSSGIWPPNSYNSMIMAPPPPSSGSLSDILGIHRIEDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTPPSALLLSPSSGCDVWPFAPNLLLTSTTAATVDLPTGIQFDAGGHSHVHACEGSSSFNHHEVISE*

>MsG0480023456.01.T05

MDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTPPSALLLSPSSGCDVWPFAPNLLLTSTTAATVDLPTGIQFDAGGHSHVHACEGSSSFNHHEVISE*

>MsG0480023456.01.T04

MIMAPPPPSSGSLSDILGIHRIEDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTPPSALLLSPSSGCDVWPFAPNLLLTSTTAATVDLPTGIQFDAGGHSHVHACEGSSSFNHHEVISE*

>MsG0480023456.01.T01

MKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQYVWPFAPNLLLTSTTAATVDLPTGIQFDAGGHSHVHACEGSSSFNHHEVISE*