AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023494.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023494.01.T01 MTR_8g494240 95.752 306 11 1 1 306 1 304 0.0 591
MsG0480023494.01.T01 MTR_8g494240 95.973 298 10 1 1 298 1 296 0.0 573
MsG0480023494.01.T01 MTR_8g494240 95.667 300 11 1 1 300 1 298 2.46e-172 483
MsG0480023494.01.T01 MTR_8g494240 51.786 112 22 4 3 114 304 383 2.03e-19 88.2
MsG0480023494.01.T01 MTR_2g031870 76.689 296 65 2 1 294 1 294 1.21e-131 376
MsG0480023494.01.T01 MTR_8g092810 67.717 254 69 3 1 243 1 252 9.75e-111 329
MsG0480023494.01.T01 MTR_2g031870 69.257 296 61 3 1 294 1 268 1.15e-106 312
MsG0480023494.01.T01 MTR_0095s0040 94.268 157 3 2 1 153 1 155 1.23e-102 301
MsG0480023494.01.T01 MTR_5g015340 52.560 293 134 5 1 292 1 289 2.74e-64 204
MsG0480023494.01.T01 MTR_5g015340 52.560 293 134 5 1 292 1 289 2.74e-64 204
MsG0480023494.01.T01 MTR_4g097130 49.191 309 135 7 1 292 1 304 7.11e-64 204
MsG0480023494.01.T01 MTR_4g097130 49.191 309 135 7 1 292 1 304 7.70e-64 204
MsG0480023494.01.T01 MTR_5g015340 51.148 305 144 5 1 304 1 301 7.75e-64 206
MsG0480023494.01.T01 MTR_4g097130 48.089 314 136 7 1 292 1 309 1.40e-62 201
MsG0480023494.01.T01 MTR_1g088180 62.295 122 43 2 125 246 295 413 1.81e-40 147
MsG0480023494.01.T01 MTR_8g018410 40.314 191 103 4 1 187 1 184 7.82e-34 125
MsG0480023494.01.T01 MTR_1g041765 59.574 94 34 2 1 94 1 90 1.33e-29 112
MsG0480023494.01.T01 MTR_2g099610 34.545 220 103 5 1 190 1 209 1.22e-28 112
MsG0480023494.01.T01 MTR_2g031880 54.464 112 35 5 61 168 3 102 3.99e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023494.01.T01 AT1G49950 59.868 304 109 7 1 298 1 297 5.31e-83 253
MsG0480023494.01.T01 AT1G49950 59.868 304 109 7 1 298 1 297 5.31e-83 253
MsG0480023494.01.T01 AT1G49950 59.868 304 109 7 1 298 1 297 5.31e-83 253
MsG0480023494.01.T01 AT5G67580 49.495 297 141 5 1 292 1 293 1.43e-56 185
MsG0480023494.01.T01 AT5G67580 49.495 297 141 5 1 292 1 293 1.43e-56 185
MsG0480023494.01.T01 AT3G49850 48.185 303 142 6 1 297 1 294 2.06e-55 182
MsG0480023494.01.T01 AT3G49850 48.185 303 142 6 1 297 1 294 2.06e-55 182
MsG0480023494.01.T01 AT1G72740 35.688 269 153 5 1 269 1 249 9.65e-35 127
MsG0480023494.01.T01 AT1G72740 35.273 275 152 6 1 269 1 255 1.93e-32 122
MsG0480023494.01.T01 AT1G17520 36.869 198 108 4 1 187 1 192 1.86e-26 106
MsG0480023494.01.T01 AT1G17520 37.186 199 107 5 1 187 1 193 9.58e-26 104
MsG0480023494.01.T01 AT1G17520 38.021 192 102 4 1 181 1 186 1.35e-25 103
MsG0480023494.01.T01 AT1G17520 38.342 193 101 5 1 181 1 187 7.97e-25 102
MsG0480023494.01.T01 AT1G54260 47.826 69 36 0 124 192 6 74 1.17e-12 66.2

Find 87 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCCACCCATGTTATTAT+TGG 0.233775 4:+85979992 MsG0480023494.01.T01:CDS
TGTTATAGTATTACAATAAA+AGG 0.273040 4:-85980306 None:intergenic
GAGCTCCAGGGAGAAGTCTA+AGG 0.278068 4:+85976604 MsG0480023494.01.T01:CDS
GCAGAAAATCTCTATGAAAT+TGG 0.285616 4:+85980022 MsG0480023494.01.T01:CDS
ATGGCTATCACTGCCGTTAC+TGG 0.296926 4:+85976677 MsG0480023494.01.T01:CDS
CAGATTAGATAACCTTATAT+TGG 0.305916 4:+85977664 MsG0480023494.01.T01:intron
TGTGGTTTGGATAGGATAAA+TGG 0.317432 4:+85976552 MsG0480023494.01.T01:intron
AGTCTGCCGGTGGCCGGTAT+TGG 0.318430 4:-85978932 None:intergenic
CCAAGCATGGGGTGGGAAAA+TGG 0.324906 4:+85976349 MsG0480023494.01.T01:CDS
TAGATATAGCTTCCAATATA+AGG 0.325779 4:-85977676 None:intergenic
AGAGACATGCCGCACATTCC+TGG 0.352882 4:+85976749 MsG0480023494.01.T01:CDS
AATTTGAGTGTGACGGGAAA+TGG 0.361800 4:+85976578 MsG0480023494.01.T01:CDS
CGGGAAATGGATCGAGCTCC+AGG 0.365659 4:+85976591 MsG0480023494.01.T01:CDS
AAATCTATCTCAGACTTTGT+AGG 0.366127 4:-85980065 None:intergenic
TCTGATGTCCATTTCTGCTT+AGG 0.367914 4:-85976297 None:intergenic
GAATCATCCGGTACCGAAAC+AGG 0.369840 4:+85976643 MsG0480023494.01.T01:CDS
TTCCTGGTCCTGGTCCAAAA+AGG 0.410764 4:+85976765 MsG0480023494.01.T01:CDS
TTCAGGTGAAACGCAGGTAT+AGG 0.416662 4:+85979934 MsG0480023494.01.T01:intron
AACAAGACACGATTAAATTC+AGG 0.435715 4:-85976390 None:intergenic
CTTCCTCTGTCTGAATATGC+AGG 0.439039 4:-85979969 None:intergenic
TGGGTGCTCCTAAGCAGAAA+TGG 0.442291 4:+85976289 MsG0480023494.01.T01:CDS
GAAACAGGATGACAACTCTA+TGG 0.446572 4:+85976658 MsG0480023494.01.T01:CDS
TTGTCATCCTGTTTCGGTAC+CGG 0.459989 4:-85976650 None:intergenic
ATAGAGTTGTCATCCTGTTT+CGG 0.460910 4:-85976656 None:intergenic
TGGAGAAATTTGAGTGTGAC+GGG 0.461904 4:+85976572 MsG0480023494.01.T01:CDS
GAGGAAGCAGCTCTTAAAGC+TGG 0.470003 4:+85976321 MsG0480023494.01.T01:CDS
CGCCATAGCAGAAGCTGAAG+AGG 0.472911 4:+85980166 MsG0480023494.01.T01:CDS
CTCTTGAGACTTGAAGAGGC+TGG 0.475264 4:-85976730 None:intergenic
AACTATTGCTTCTTTCATAG+AGG 0.478041 4:+85977730 MsG0480023494.01.T01:CDS
TGCCTCTTCAGCTTCTGCTA+TGG 0.491455 4:-85980168 None:intergenic
CCTCCCTTCCAATAATAACA+TGG 0.495257 4:-85980000 None:intergenic
AGTCTAAGGGAGCAATCAAA+AGG 0.496855 4:+85976618 MsG0480023494.01.T01:CDS
TTCCTCTGTCTGAATATGCA+GGG 0.497922 4:-85979968 None:intergenic
AATCTATCTCAGACTTTGTA+GGG 0.500580 4:-85980064 None:intergenic
AAATCTCTATGAAATTGGAC+AGG 0.500872 4:+85980027 MsG0480023494.01.T01:CDS
AAGCTGGAGTTGCCAAGCAT+GGG 0.503893 4:+85976337 MsG0480023494.01.T01:CDS
TGCTCCCTTAGACTTCTCCC+TGG 0.506852 4:-85976609 None:intergenic
ATGCCGCACATTCCTGGTCC+TGG 0.511744 4:+85976755 MsG0480023494.01.T01:CDS
GATAGATTTAGAAATAGAAA+AGG 0.512772 4:+85980079 MsG0480023494.01.T01:CDS
TCGCTCAAATGTCGATCTCA+AGG 0.519219 4:+85976416 MsG0480023494.01.T01:CDS
ACCTCAGAGACGGTAAGTCT+TGG 0.519967 4:+85980278 MsG0480023494.01.T01:CDS
ATATCTAGCTTGAATGAGCT+TGG 0.522209 4:+85977692 MsG0480023494.01.T01:CDS
AATCAAAAGGGTGAATCATC+CGG 0.527127 4:+85976631 MsG0480023494.01.T01:CDS
ATCAACAATTTCATCATCAT+CGG 0.527962 4:-85976705 None:intergenic
AGCTGAAGAGGCAGCAAAGG+AGG 0.528236 4:+85980178 MsG0480023494.01.T01:CDS
AAAATGGCGTACAATAATCA+AGG 0.529843 4:+85976365 MsG0480023494.01.T01:CDS
ATGGAGAAATTTGAGTGTGA+CGG 0.530825 4:+85976571 MsG0480023494.01.T01:CDS
ATCTAGCGGAAAACTGATCA+AGG 0.531425 4:+85978992 MsG0480023494.01.T01:CDS
AAAGCTGGAGTTGCCAAGCA+TGG 0.532704 4:+85976336 MsG0480023494.01.T01:CDS
AGAAGCTGAAGAGGCAGCAA+AGG 0.535223 4:+85980175 MsG0480023494.01.T01:CDS
CCACCCATGTTATTATTGGA+AGG 0.535733 4:+85979996 MsG0480023494.01.T01:CDS
TCTTGAGACTTGAAGAGGCT+GGG 0.541739 4:-85976729 None:intergenic
CTGTCTGAATATGCAGGGGT+AGG 0.544633 4:-85979963 None:intergenic
GGCAGCCTCTTGAGCAGACA+TGG 0.544900 4:-85980108 None:intergenic
AGAGGCAGCAAAGGAGGCAG+AGG 0.547850 4:+85980184 MsG0480023494.01.T01:CDS
CTCTTCAGCTTCTGCTATGG+CGG 0.551526 4:-85980165 None:intergenic
GACTGCTCGAGCAGCATATG+CGG 0.551764 4:-85980129 None:intergenic
AAGGTCCATGTCTGCTCAAG+AGG 0.553221 4:+85980103 MsG0480023494.01.T01:CDS
ATTTAGAAATAGAAAAGGTA+AGG 0.556910 4:+85980084 MsG0480023494.01.T01:CDS
TGGAGTTGCCAAGCATGGGG+TGG 0.557397 4:+85976341 MsG0480023494.01.T01:CDS
CACCCATGTTATTATTGGAA+GGG 0.560560 4:+85979997 MsG0480023494.01.T01:CDS
GGAGTTGCCAAGCATGGGGT+GGG 0.561098 4:+85976342 MsG0480023494.01.T01:CDS
CTAAAGTATCTTACATCTAG+CGG 0.565433 4:+85978978 MsG0480023494.01.T01:CDS
TCTAGCTTGAATGAGCTTGG+TGG 0.575119 4:+85977695 MsG0480023494.01.T01:CDS
CCTTCCAATAATAACATGGG+TGG 0.576377 4:-85979996 None:intergenic
GTAGGACCAATACCGGCCAC+CGG 0.579738 4:+85978926 MsG0480023494.01.T01:intron
GTCTAAGGGAGCAATCAAAA+GGG 0.586208 4:+85976619 MsG0480023494.01.T01:CDS
TCCTCTGTCTGAATATGCAG+GGG 0.589128 4:-85979967 None:intergenic
AGCTCCAGGGAGAAGTCTAA+GGG 0.592466 4:+85976605 MsG0480023494.01.T01:CDS
AGCTGCAATGAAAACACTGA+AGG 0.594087 4:+85980247 MsG0480023494.01.T01:CDS
CCATGTTATTATTGGAAGGG+AGG 0.596204 4:+85980000 MsG0480023494.01.T01:CDS
ATGTCTCTTGAGACTTGAAG+AGG 0.598346 4:-85976734 None:intergenic
CTCCCTTCCAATAATAACAT+GGG 0.599995 4:-85979999 None:intergenic
ATCATCGGATGGACCAGTAA+CGG 0.608006 4:-85976690 None:intergenic
TTATATTTCAGGTGAAACGC+AGG 0.613161 4:+85979928 MsG0480023494.01.T01:intron
ACAATTTCATCATCATCGGA+TGG 0.613826 4:-85976701 None:intergenic
GCTGCAATGAAAACACTGAA+GGG 0.616290 4:+85980248 MsG0480023494.01.T01:CDS
CTTCCAATAATAACATGGGT+GGG 0.618304 4:-85979995 None:intergenic
GCAGAAATGGACATCAGAAG+AGG 0.618364 4:+85976302 MsG0480023494.01.T01:CDS
GGACCAGGACCAGGAATGTG+CGG 0.620041 4:-85976758 None:intergenic
CTGCAATGAAAACACTGAAG+GGG 0.632379 4:+85980249 MsG0480023494.01.T01:CDS
AGCTGGAGTTGCCAAGCATG+GGG 0.639684 4:+85976338 MsG0480023494.01.T01:CDS
GCCAAGACTTACCGTCTCTG+AGG 0.642080 4:-85980279 None:intergenic
GGGGAGAAACACCTCAGAGA+CGG 0.644348 4:+85980268 MsG0480023494.01.T01:CDS
GGGAAATGGATCGAGCTCCA+GGG 0.651429 4:+85976592 MsG0480023494.01.T01:CDS
AATCTCTATGAAATTGGACA+GGG 0.658728 4:+85980028 MsG0480023494.01.T01:CDS
ACCCCTGCATATTCAGACAG+AGG 0.679893 4:+85979966 MsG0480023494.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAACCAAAAAAAATA+TGG - Chr4:85976809-85976828 None:intergenic 10.0%
!! ATTACAATTTATATAACAAA+TGG - Chr4:85977455-85977474 None:intergenic 10.0%
!! TATTTAACCAAAAAAAATAT+GGG - Chr4:85976808-85976827 None:intergenic 10.0%
!!! ATATTTTTTTTGGTTAAATA+TGG + Chr4:85976808-85976827 MsG0480023494.01.T01:intron 10.0%
!!! TACATTATACAAATTTTTTA+TGG + Chr4:85977515-85977534 MsG0480023494.01.T01:intron 10.0%
!! AAAGATTAATGTTATTATGT+TGG - Chr4:85979670-85979689 None:intergenic 15.0%
!! AAAGTATATTGAATTAATGT+TGG + Chr4:85976498-85976517 MsG0480023494.01.T01:intron 15.0%
!! AAATTTGTATAATGTAAACA+TGG - Chr4:85977511-85977530 None:intergenic 15.0%
!! ACAAATATATATATTCTACA+AGG - Chr4:85979638-85979657 None:intergenic 15.0%
!! ATGAAGAAATTACATTATAT+TGG + Chr4:85978744-85978763 MsG0480023494.01.T01:intron 15.0%
!! CAAATATATATATTCTACAA+GGG - Chr4:85979637-85979656 None:intergenic 15.0%
!! TGTTATAGTATTACAATAAA+AGG - Chr4:85980309-85980328 None:intergenic 15.0%
!! AAATCAAGATAATGAAATCA+GGG - Chr4:85977367-85977386 None:intergenic 20.0%
!! AATTCATTTAATTCAGTAGT+TGG + Chr4:85977797-85977816 MsG0480023494.01.T01:intron 20.0%
!! ACAATTTATATAACAAATGG+AGG - Chr4:85977452-85977471 None:intergenic 20.0%
!! ATTTAGAAATAGAAAAGGTA+AGG + Chr4:85980084-85980103 MsG0480023494.01.T01:CDS 20.0%
!! GAATTAAACAAATAACATCA+TGG - Chr4:85977948-85977967 None:intergenic 20.0%
!! GATAGATTTAGAAATAGAAA+AGG + Chr4:85980079-85980098 MsG0480023494.01.T01:CDS 20.0%
!! TAGAAGAAAATGTAAGAAAT+AGG + Chr4:85978408-85978427 MsG0480023494.01.T01:intron 20.0%
!! TATTTAATTGCATCTAATAG+CGG + Chr4:85976835-85976854 MsG0480023494.01.T01:intron 20.0%
!!! AAATTCCATTCAATTTTCAA+TGG + Chr4:85976961-85976980 MsG0480023494.01.T01:intron 20.0%
!!! ATATATCACATTTTACCAAA+GGG - Chr4:85978686-85978705 None:intergenic 20.0%
!!! ATTTTCTTCTATACAATTCT+AGG - Chr4:85978399-85978418 None:intergenic 20.0%
!!! TTTTAACAACTACAATCATT+AGG - Chr4:85977839-85977858 None:intergenic 20.0%
!!! TTTTTTCATGAACCATAAAA+CGG - Chr4:85979227-85979246 None:intergenic 20.0%
! AAAAGGTCTATTGTTAAGTT+TGG + Chr4:85976782-85976801 MsG0480023494.01.T01:intron 25.0%
! AAACATAACTTCTAATGTCT+AGG + Chr4:85979545-85979564 MsG0480023494.01.T01:intron 25.0%
! AAAGCAAAACAAATAAAAGC+TGG - Chr4:85977776-85977795 None:intergenic 25.0%
! AAATCTGTACAATGTAAACA+TGG - Chr4:85977598-85977617 None:intergenic 25.0%
! AACTAGGTACACAAATAATA+TGG - Chr4:85979448-85979467 None:intergenic 25.0%
! AATAGTGTGTGTTGAAATTT+GGG + Chr4:85977547-85977566 MsG0480023494.01.T01:intron 25.0%
! AATCAAGATAATGAAATCAG+GGG - Chr4:85977366-85977385 None:intergenic 25.0%
! AGACATTAGAAGTTATGTTT+AGG - Chr4:85979545-85979564 None:intergenic 25.0%
! ATCAACAATTTCATCATCAT+CGG - Chr4:85976708-85976727 None:intergenic 25.0%
! ATCTACTTTAATAGTGCTAT+CGG + Chr4:85977273-85977292 MsG0480023494.01.T01:intron 25.0%
! ATGAGAATAGCATCAAAATA+TGG - Chr4:85979853-85979872 None:intergenic 25.0%
! CAAATCAAGATAATGAAATC+AGG - Chr4:85977368-85977387 None:intergenic 25.0%
! CAATTCCATTGAAAATTGAA+TGG - Chr4:85976969-85976988 None:intergenic 25.0%
! CAGATTAGATAACCTTATAT+TGG + Chr4:85977664-85977683 MsG0480023494.01.T01:intron 25.0%
! CTTTGGTAAAATGTGATATA+TGG + Chr4:85978685-85978704 MsG0480023494.01.T01:intron 25.0%
! GAAGATAATTGAGATATTTG+AGG + Chr4:85977022-85977041 MsG0480023494.01.T01:intron 25.0%
! TAAAAATCTCATGTCCATAT+TGG + Chr4:85977916-85977935 MsG0480023494.01.T01:intron 25.0%
! TAATCTGTATAATGCAAACA+TGG - Chr4:85977651-85977670 None:intergenic 25.0%
! TAGATATAGCTTCCAATATA+AGG - Chr4:85977679-85977698 None:intergenic 25.0%
! TATTGTATGTATGCATTAGA+TGG - Chr4:85979053-85979072 None:intergenic 25.0%
!! AACTTAACAATAGACCTTTT+TGG - Chr4:85976782-85976801 None:intergenic 25.0%
!! ATTTTGTATTAAACCGTGAA+TGG - Chr4:85976896-85976915 None:intergenic 25.0%
!! CATATATCACATTTTACCAA+AGG - Chr4:85978687-85978706 None:intergenic 25.0%
!! CATTCAATTTTCAATGGAAT+TGG + Chr4:85976967-85976986 MsG0480023494.01.T01:intron 25.0%
!! TTCATCACTTTGTATTTTGT+AGG + Chr4:85978908-85978927 MsG0480023494.01.T01:intron 25.0%
!! TTTGATGCTATTCTCATTTT+TGG + Chr4:85979856-85979875 MsG0480023494.01.T01:intron 25.0%
!! TTTTACAACTCTACATTTTC+TGG + Chr4:85979743-85979762 MsG0480023494.01.T01:intron 25.0%
!!! AGATATTCTAAAACACTGTA+TGG - Chr4:85977896-85977915 None:intergenic 25.0%
!!! TTGCTTTGATTTTTCTAAGT+CGG + Chr4:85978507-85978526 MsG0480023494.01.T01:intron 25.0%
AAAAAACTCAAGGCTCATAT+TGG + Chr4:85979507-85979526 MsG0480023494.01.T01:intron 30.0%
AAAATGGCGTACAATAATCA+AGG + Chr4:85976365-85976384 MsG0480023494.01.T01:CDS 30.0%
AAAATTTCGCTTTGCTACAA+TGG - Chr4:85977173-85977192 None:intergenic 30.0%
AAATCTATCTCAGACTTTGT+AGG - Chr4:85980068-85980087 None:intergenic 30.0%
AAATCTCTATGAAATTGGAC+AGG + Chr4:85980027-85980046 MsG0480023494.01.T01:CDS 30.0%
AACAAGACACGATTAAATTC+AGG - Chr4:85976393-85976412 None:intergenic 30.0%
AACTATTGCTTCTTTCATAG+AGG + Chr4:85977730-85977749 MsG0480023494.01.T01:CDS 30.0%
AATCTATCTCAGACTTTGTA+GGG - Chr4:85980067-85980086 None:intergenic 30.0%
AATCTCTATGAAATTGGACA+GGG + Chr4:85980028-85980047 MsG0480023494.01.T01:CDS 30.0%
ACCATTAGATCCACATTTAA+CGG - Chr4:85976525-85976544 None:intergenic 30.0%
ATAGTGTGTGTTGAAATTTG+GGG + Chr4:85977548-85977567 MsG0480023494.01.T01:intron 30.0%
CAAATTTCAACACACACTAT+TGG - Chr4:85977548-85977567 None:intergenic 30.0%
CAATAGTGTGTGTTGAAATT+TGG + Chr4:85977546-85977565 MsG0480023494.01.T01:intron 30.0%
CAATTAGAGATCTTACTCAT+GGG + Chr4:85979898-85979917 MsG0480023494.01.T01:intron 30.0%
GAGTGTTATAGCATTACATT+TGG + Chr4:85978785-85978804 MsG0480023494.01.T01:intron 30.0%
GCAGAAAATCTCTATGAAAT+TGG + Chr4:85980022-85980041 MsG0480023494.01.T01:CDS 30.0%
GGTGTAATAGAAAAAACTCA+AGG + Chr4:85979497-85979516 MsG0480023494.01.T01:intron 30.0%
GTTATAGCATTACATTTGGT+TGG + Chr4:85978789-85978808 MsG0480023494.01.T01:intron 30.0%
TAAATGTGGATCTAATGGTT+TGG + Chr4:85976526-85976545 MsG0480023494.01.T01:intron 30.0%
TCAATTAGAGATCTTACTCA+TGG + Chr4:85979897-85979916 MsG0480023494.01.T01:intron 30.0%
TCAATTATCTTCCACTTTCA+GGG - Chr4:85977014-85977033 None:intergenic 30.0%
! ACTGGTTAGTATTTTGTATG+AGG + Chr4:85978168-85978187 MsG0480023494.01.T01:intron 30.0%
! ATTTTCAATGGAATTGGATC+CGG + Chr4:85976973-85976992 MsG0480023494.01.T01:intron 30.0%
! CTAAAGTATCTTACATCTAG+CGG + Chr4:85978978-85978997 MsG0480023494.01.T01:CDS 30.0%
! CTGGTTAGTATTTTGTATGA+GGG + Chr4:85978169-85978188 MsG0480023494.01.T01:intron 30.0%
!! CAATTCTAGGACTATAAACA+AGG - Chr4:85978386-85978405 None:intergenic 30.0%
!! GAGTTGATATTAGTACAAAG+AGG + Chr4:85977975-85977994 MsG0480023494.01.T01:intron 30.0%
!! TGCTTTGATTTTTCTAAGTC+GGG + Chr4:85978508-85978527 MsG0480023494.01.T01:intron 30.0%
!! TGGGTTGAGTTTTATATTTC+AGG + Chr4:85979917-85979936 MsG0480023494.01.T01:intron 30.0%
!!! ACTGTTGTTTTTACCATTCA+CGG + Chr4:85976880-85976899 MsG0480023494.01.T01:intron 30.0%
!!! AGTTTGGCCCATATTTTTTT+TGG + Chr4:85976798-85976817 MsG0480023494.01.T01:intron 30.0%
!!! CAGTTTTTTGCTAAAAGATG+AGG + Chr4:85977112-85977131 MsG0480023494.01.T01:intron 30.0%
AACATGGTTAAGCATACTGT+TGG - Chr4:85977582-85977601 None:intergenic 35.0%
AAGACCCATTTCCAAAATGT+GGG + Chr4:85978073-85978092 MsG0480023494.01.T01:intron 35.0%
AAGGGTTTGTCTACTTTGTA+AGG - Chr4:85979619-85979638 None:intergenic 35.0%
AATCAAAAGGGTGAATCATC+CGG + Chr4:85976631-85976650 MsG0480023494.01.T01:CDS 35.0%
ACAATTTCATCATCATCGGA+TGG - Chr4:85976704-85976723 None:intergenic 35.0%
ACCGTTAAATGTGGATCTAA+TGG + Chr4:85976521-85976540 MsG0480023494.01.T01:intron 35.0%
AGCAAAAAACTGTTCCATGA+TGG - Chr4:85977104-85977123 None:intergenic 35.0%
AGTCTCTTCGGATAGAAATA+AGG + Chr4:85979302-85979321 MsG0480023494.01.T01:intron 35.0%
ATAGAGTTGTCATCCTGTTT+CGG - Chr4:85976659-85976678 None:intergenic 35.0%
ATCAGGACCAAAAAGACAAA+AGG + Chr4:85979387-85979406 MsG0480023494.01.T01:intron 35.0%
ATCTTTACCATGTACTGCTT+AGG + Chr4:85979684-85979703 MsG0480023494.01.T01:intron 35.0%
ATGGAGAAATTTGAGTGTGA+CGG + Chr4:85976571-85976590 MsG0480023494.01.T01:CDS 35.0%
CACCCATGTTATTATTGGAA+GGG + Chr4:85979997-85980016 MsG0480023494.01.T01:CDS 35.0%
CATCATGGAATATGCCAATA+TGG - Chr4:85977933-85977952 None:intergenic 35.0%
CGGCTATTGTCTTTCAATTA+GGG + Chr4:85977293-85977312 MsG0480023494.01.T01:intron 35.0%
CTAACCAGTATTTGTACTAG+AGG - Chr4:85978157-85978176 None:intergenic 35.0%
CTCAATTATCTTCCACTTTC+AGG - Chr4:85977015-85977034 None:intergenic 35.0%
CTCCCTTCCAATAATAACAT+GGG - Chr4:85980002-85980021 None:intergenic 35.0%
CTTCATCAAACCAACTTCTA+CGG - Chr4:85979363-85979382 None:intergenic 35.0%
CTTCCAATAATAACATGGGT+GGG - Chr4:85979998-85980017 None:intergenic 35.0%
GAAATGGGTCTTACATAAAG+TGG - Chr4:85978065-85978084 None:intergenic 35.0%
GAGTGTTATAGCATCACATT+TGG + Chr4:85978822-85978841 MsG0480023494.01.T01:intron 35.0%
GATGTTCTATTCTGCAAACA+AGG - Chr4:85977256-85977275 None:intergenic 35.0%
GGATATCCCATTTATAGTAG+AGG + Chr4:85979148-85979167 MsG0480023494.01.T01:intron 35.0%
GGCTATTGTCTTTCAATTAG+GGG + Chr4:85977294-85977313 MsG0480023494.01.T01:intron 35.0%
GGGAAAAATCAAAGTCTCTT+CGG + Chr4:85979290-85979309 MsG0480023494.01.T01:intron 35.0%
GTTATAGCATCACATTTGGT+TGG + Chr4:85978826-85978845 MsG0480023494.01.T01:intron 35.0%
TAAGACCCATTTCCAAAATG+TGG + Chr4:85978072-85978091 MsG0480023494.01.T01:intron 35.0%
TAATGTTGGACCGTTAAATG+TGG + Chr4:85976512-85976531 MsG0480023494.01.T01:intron 35.0%
TCAGGACCAAAAAGACAAAA+GGG + Chr4:85979388-85979407 MsG0480023494.01.T01:intron 35.0%
TCATTCGATGAAATCCATGT+GGG + Chr4:85978034-85978053 MsG0480023494.01.T01:intron 35.0%
TCGGCTATTGTCTTTCAATT+AGG + Chr4:85977292-85977311 MsG0480023494.01.T01:intron 35.0%
TCTATCCTAGACACATGAAT+GGG + Chr4:85979419-85979438 MsG0480023494.01.T01:intron 35.0%
TCTCTCTTATTAGGTGAAAC+CGG - Chr4:85978106-85978125 None:intergenic 35.0%
TGGTTTGATGAAGTTGAATC+AGG + Chr4:85979370-85979389 MsG0480023494.01.T01:intron 35.0%
TGTCTACTTTGTAAGGTTTG+AGG - Chr4:85979612-85979631 None:intergenic 35.0%
TTCCAACACTCTCTCTTATT+AGG - Chr4:85978115-85978134 None:intergenic 35.0%
TTGCAAATTATCCCTGAAAG+TGG + Chr4:85977000-85977019 MsG0480023494.01.T01:intron 35.0%
! AAAATAGCTCTGCTTCATGA+TGG - Chr4:85978535-85978554 None:intergenic 35.0%
! AGGGATAATTTGCAAAACTC+CGG - Chr4:85976995-85977014 None:intergenic 35.0%
! ATATCTAGCTTGAATGAGCT+TGG + Chr4:85977692-85977711 MsG0480023494.01.T01:CDS 35.0%
! CTAATGCCCTTTTGTCTTTT+TGG - Chr4:85979397-85979416 None:intergenic 35.0%
! GATTTGCTTGCATTCTATAG+AGG + Chr4:85977382-85977401 MsG0480023494.01.T01:intron 35.0%
! GTATTTTGTAGGACCAATAC+CGG + Chr4:85978919-85978938 MsG0480023494.01.T01:intron 35.0%
! TCTAGGACTATAAACAAGGA+TGG - Chr4:85978382-85978401 None:intergenic 35.0%
! TGTGGTTTGGATAGGATAAA+TGG + Chr4:85976552-85976571 MsG0480023494.01.T01:intron 35.0%
! TTATATTTCAGGTGAAACGC+AGG + Chr4:85979928-85979947 MsG0480023494.01.T01:intron 35.0%
! TTTGGTTATGTGGTTTGGAT+AGG + Chr4:85976544-85976563 MsG0480023494.01.T01:intron 35.0%
!! AAGACGTAGTGGATTAGTAT+TGG + Chr4:85979269-85979288 MsG0480023494.01.T01:intron 35.0%
!! AATGGTTTGGTTATGTGGTT+TGG + Chr4:85976539-85976558 MsG0480023494.01.T01:intron 35.0%
!! AGACGTAGTGGATTAGTATT+GGG + Chr4:85979270-85979289 MsG0480023494.01.T01:intron 35.0%
!! GATCTAATGGTTTGGTTATG+TGG + Chr4:85976534-85976553 MsG0480023494.01.T01:intron 35.0%
!! GCAGAGCTATTTTCATAATG+AGG + Chr4:85978542-85978561 MsG0480023494.01.T01:intron 35.0%
!! GCTCATATTGGTGTTAGATA+AGG + Chr4:85979519-85979538 MsG0480023494.01.T01:intron 35.0%
!! GCTTTGATTTTTCTAAGTCG+GGG + Chr4:85978509-85978528 MsG0480023494.01.T01:intron 35.0%
!! TCATTTACTCTAAGACGTAG+TGG + Chr4:85979258-85979277 MsG0480023494.01.T01:intron 35.0%
!!! AACAACTTTTTGAAGTCTGC+CGG - Chr4:85978948-85978967 None:intergenic 35.0%
AACCACAAGTCACATTAACC+AGG - Chr4:85978614-85978633 None:intergenic 40.0%
AACCTGGTTAATGTGACTTG+TGG + Chr4:85978609-85978628 MsG0480023494.01.T01:intron 40.0%
ACACCCACCCATGTTATTAT+TGG + Chr4:85979992-85980011 MsG0480023494.01.T01:CDS 40.0%
AGCTGCAATGAAAACACTGA+AGG + Chr4:85980247-85980266 MsG0480023494.01.T01:CDS 40.0%
AGGTCAGCCTCTACTATAAA+TGG - Chr4:85979158-85979177 None:intergenic 40.0%
AGTCTAAGGGAGCAATCAAA+AGG + Chr4:85976618-85976637 MsG0480023494.01.T01:CDS 40.0%
ATCTAGCGGAAAACTGATCA+AGG + Chr4:85978992-85979011 MsG0480023494.01.T01:CDS 40.0%
ATGTCTCTTGAGACTTGAAG+AGG - Chr4:85976737-85976756 None:intergenic 40.0%
ATTGCATCTAATAGCGGTAG+AGG + Chr4:85976841-85976860 MsG0480023494.01.T01:intron 40.0%
CACATTAACCAGGTTTCAGA+AGG - Chr4:85978604-85978623 None:intergenic 40.0%
CACTCCTCTAGTACAAATAC+TGG + Chr4:85978150-85978169 MsG0480023494.01.T01:intron 40.0%
CCACCCATGTTATTATTGGA+AGG + Chr4:85979996-85980015 MsG0480023494.01.T01:CDS 40.0%
CCATGTTATTATTGGAAGGG+AGG + Chr4:85980000-85980019 MsG0480023494.01.T01:CDS 40.0%
CCTCCCTTCCAATAATAACA+TGG - Chr4:85980003-85980022 None:intergenic 40.0%
CCTTCCAATAATAACATGGG+TGG - Chr4:85979999-85980018 None:intergenic 40.0%
CTCATTCGATGAAATCCATG+TGG + Chr4:85978033-85978052 MsG0480023494.01.T01:intron 40.0%
CTGCAATGAAAACACTGAAG+GGG + Chr4:85980249-85980268 MsG0480023494.01.T01:CDS 40.0%
GAAACAGGATGACAACTCTA+TGG + Chr4:85976658-85976677 MsG0480023494.01.T01:CDS 40.0%
GCTGCAATGAAAACACTGAA+GGG + Chr4:85980248-85980267 MsG0480023494.01.T01:CDS 40.0%
GGACTTTCACTTTACCATCA+TGG + Chr4:85977087-85977106 MsG0480023494.01.T01:intron 40.0%
GGATAGAAATAAGGCCTAAG+TGG + Chr4:85979311-85979330 MsG0480023494.01.T01:intron 40.0%
GGTCAGCCTCTACTATAAAT+GGG - Chr4:85979157-85979176 None:intergenic 40.0%
GTACCTAGTTCAGTAGTGTT+GGG + Chr4:85979458-85979477 MsG0480023494.01.T01:intron 40.0%
GTCTAAGGGAGCAATCAAAA+GGG + Chr4:85976619-85976638 MsG0480023494.01.T01:CDS 40.0%
GTCTATCCTAGACACATGAA+TGG + Chr4:85979418-85979437 MsG0480023494.01.T01:intron 40.0%
GTCTATGACCTCCATATCAT+TGG - Chr4:85978224-85978243 None:intergenic 40.0%
GTTTACATCCCCTATCCTTT+GGG + Chr4:85979180-85979199 MsG0480023494.01.T01:intron 40.0%
TAAGGTGGCTACCAATGATA+TGG + Chr4:85978210-85978229 MsG0480023494.01.T01:intron 40.0%
TCTGATGTCCATTTCTGCTT+AGG - Chr4:85976300-85976319 None:intergenic 40.0%
TGGAGAAATTTGAGTGTGAC+GGG + Chr4:85976572-85976591 MsG0480023494.01.T01:CDS 40.0%
TGTACCTAGTTCAGTAGTGT+TGG + Chr4:85979457-85979476 MsG0480023494.01.T01:intron 40.0%
TGTTTACATCCCCTATCCTT+TGG + Chr4:85979179-85979198 MsG0480023494.01.T01:intron 40.0%
TTCCTCTGTCTGAATATGCA+GGG - Chr4:85979971-85979990 None:intergenic 40.0%
TTGCATCTAATAGCGGTAGA+GGG + Chr4:85976842-85976861 MsG0480023494.01.T01:intron 40.0%
TTGCTACAATGGTAAACTGC+TGG - Chr4:85977162-85977181 None:intergenic 40.0%
! AATTTGAGTGTGACGGGAAA+TGG + Chr4:85976578-85976597 MsG0480023494.01.T01:CDS 40.0%
! ACAATAGACCTTTTTGGACC+AGG - Chr4:85976776-85976795 None:intergenic 40.0%
! CACCTAATAAGAGAGAGTGT+TGG + Chr4:85978110-85978129 MsG0480023494.01.T01:intron 40.0%
! TTTTGTCCAATCACCAGTGT+GGG + Chr4:85979120-85979139 MsG0480023494.01.T01:intron 40.0%
! TTTTTGTCCAATCACCAGTG+TGG + Chr4:85979119-85979138 MsG0480023494.01.T01:intron 40.0%
!! ATTTGTACTAGAGGAGTGCT+AGG - Chr4:85978148-85978167 None:intergenic 40.0%
!! CAACTCTACATTTTCTGGTG+TGG + Chr4:85979748-85979767 MsG0480023494.01.T01:intron 40.0%
!! GGATCCCACATTTTGGAAAT+GGG - Chr4:85978080-85978099 None:intergenic 40.0%
!! TGGATCCCACATTTTGGAAA+TGG - Chr4:85978081-85978100 None:intergenic 40.0%
!!! TTCTCTACAGTGCCGTTTTA+TGG + Chr4:85979212-85979231 MsG0480023494.01.T01:intron 40.0%
AAAGTGAAAGTCCCACCTTG+TGG - Chr4:85977080-85977099 None:intergenic 45.0%
AAGTGGAGCTTGTAAAGCCT+GGG + Chr4:85979328-85979347 MsG0480023494.01.T01:intron 45.0%
ACACCCAACACTACTGAACT+AGG - Chr4:85979464-85979483 None:intergenic 45.0%
AGCTGTACCTAAGCAGTACA+TGG - Chr4:85979694-85979713 None:intergenic 45.0%
AGGATAGGGGATGTAAACAC+AGG - Chr4:85979178-85979197 None:intergenic 45.0%
AGGCTTTACAAGCTCCACTT+AGG - Chr4:85979328-85979347 None:intergenic 45.0%
AGGGACATTCGAAACAGCTA+AGG - Chr4:85978667-85978686 None:intergenic 45.0%
ATAAAGTGGTGAGACCCACA+TGG - Chr4:85978051-85978070 None:intergenic 45.0%
ATCATCGGATGGACCAGTAA+CGG - Chr4:85976693-85976712 None:intergenic 45.0%
ATTTATTACTCCAGCGCACG+AGG - Chr4:85978324-85978343 None:intergenic 45.0%
CAATGTGACTACCATCGCTT+CGG + Chr4:85977048-85977067 MsG0480023494.01.T01:intron 45.0%
CTTATTAGGTGAAACCGGTG+TGG - Chr4:85978101-85978120 None:intergenic 45.0%
CTTCCTCTGTCTGAATATGC+AGG - Chr4:85979972-85979991 None:intergenic 45.0%
GCAGAAATGGACATCAGAAG+AGG + Chr4:85976302-85976321 MsG0480023494.01.T01:CDS 45.0%
GTGTGTGTTGAAATTTGGGG+CGG + Chr4:85977551-85977570 MsG0480023494.01.T01:intron 45.0%
TAACCAGGTTTCAGAAGGCA+TGG - Chr4:85978599-85978618 None:intergenic 45.0%
TAAGTGGAGCTTGTAAAGCC+TGG + Chr4:85979327-85979346 MsG0480023494.01.T01:intron 45.0%
TCAAACCAACTTCTACGGTG+AGG - Chr4:85979358-85979377 None:intergenic 45.0%
TCCTCTGTCTGAATATGCAG+GGG - Chr4:85979970-85979989 None:intergenic 45.0%
TCGCTCAAATGTCGATCTCA+AGG + Chr4:85976416-85976435 MsG0480023494.01.T01:CDS 45.0%
TCTTGAGACTTGAAGAGGCT+GGG - Chr4:85976732-85976751 None:intergenic 45.0%
TTCAGGTGAAACGCAGGTAT+AGG + Chr4:85979934-85979953 MsG0480023494.01.T01:intron 45.0%
TTGTCATCCTGTTTCGGTAC+CGG - Chr4:85976653-85976672 None:intergenic 45.0%
! AGCTGTTTCGAATGTCCCTT+TGG + Chr4:85978668-85978687 MsG0480023494.01.T01:intron 45.0%
! ATTTTGTATGAGGGAGAGCC+TGG + Chr4:85978178-85978197 MsG0480023494.01.T01:intron 45.0%
! TCTAGCTTGAATGAGCTTGG+TGG + Chr4:85977695-85977714 MsG0480023494.01.T01:CDS 45.0%
! TGACTTGTGGTTTCTGTGAG+TGG + Chr4:85978622-85978641 MsG0480023494.01.T01:intron 45.0%
! TTTTGTATGAGGGAGAGCCT+GGG + Chr4:85978179-85978198 MsG0480023494.01.T01:intron 45.0%
!!! AACTTTTTGAAGTCTGCCGG+TGG - Chr4:85978945-85978964 None:intergenic 45.0%
AAAGCTGGAGTTGCCAAGCA+TGG + Chr4:85976336-85976355 MsG0480023494.01.T01:CDS 50.0%
AACCCACTCCCAAAGGATAG+GGG - Chr4:85979191-85979210 None:intergenic 50.0%
AAGCTGGAGTTGCCAAGCAT+GGG + Chr4:85976337-85976356 MsG0480023494.01.T01:CDS 50.0%
AAGGTCCATGTCTGCTCAAG+AGG + Chr4:85980103-85980122 MsG0480023494.01.T01:CDS 50.0%
ACCCCTGCATATTCAGACAG+AGG + Chr4:85979966-85979985 MsG0480023494.01.T01:CDS 50.0%
ACCTCAGAGACGGTAAGTCT+TGG + Chr4:85980278-85980297 MsG0480023494.01.T01:CDS 50.0%
AGAACCCACTCCCAAAGGAT+AGG - Chr4:85979193-85979212 None:intergenic 50.0%
AGAAGCTGAAGAGGCAGCAA+AGG + Chr4:85980175-85980194 MsG0480023494.01.T01:CDS 50.0%
AGAGAAGAACCCACTCCCAA+AGG - Chr4:85979198-85979217 None:intergenic 50.0%
AGCTCCAGGGAGAAGTCTAA+GGG + Chr4:85976605-85976624 MsG0480023494.01.T01:CDS 50.0%
ATGGCTATCACTGCCGTTAC+TGG + Chr4:85976677-85976696 MsG0480023494.01.T01:CDS 50.0%
CAAGCAGAGAGGCTGTTACA+AGG - Chr4:85978253-85978272 None:intergenic 50.0%
CCAAAATGTGGGATCCACAC+CGG + Chr4:85978084-85978103 MsG0480023494.01.T01:intron 50.0%
CCAAACACAACCCGACAAAG+CGG - Chr4:85979589-85979608 None:intergenic 50.0%
CTCTTCAGCTTCTGCTATGG+CGG - Chr4:85980168-85980187 None:intergenic 50.0%
CTCTTGAGACTTGAAGAGGC+TGG - Chr4:85976733-85976752 None:intergenic 50.0%
CTGTCTGAATATGCAGGGGT+AGG - Chr4:85979966-85979985 None:intergenic 50.0%
GAACCCACTCCCAAAGGATA+GGG - Chr4:85979192-85979211 None:intergenic 50.0%
GAGGAAGCAGCTCTTAAAGC+TGG + Chr4:85976321-85976340 MsG0480023494.01.T01:CDS 50.0%
GCAATCCTCACCGTAGAAGT+TGG + Chr4:85979350-85979369 MsG0480023494.01.T01:intron 50.0%
GGTGACCCATTCATGTGTCT+AGG - Chr4:85979427-85979446 None:intergenic 50.0%
GGTGGCTACCAATGATATGG+AGG + Chr4:85978213-85978232 MsG0480023494.01.T01:intron 50.0%
TACTGCTTAGGTACAGCTGC+TGG + Chr4:85979696-85979715 MsG0480023494.01.T01:intron 50.0%
TGCCTCTTCAGCTTCTGCTA+TGG - Chr4:85980171-85980190 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + Chr4:85976289-85976308 MsG0480023494.01.T01:CDS 50.0%
TGTAACAGCCTCTCTGCTTG+CGG + Chr4:85978253-85978272 MsG0480023494.01.T01:intron 50.0%
TTCCTGGTCCTGGTCCAAAA+AGG + Chr4:85976765-85976784 MsG0480023494.01.T01:CDS 50.0%
! ACCTTTCAAGCCGCTTTGTC+GGG + Chr4:85979576-85979595 MsG0480023494.01.T01:intron 50.0%
! ATCCCCTATCCTTTGGGAGT+GGG + Chr4:85979186-85979205 MsG0480023494.01.T01:intron 50.0%
! CACCTTTCAAGCCGCTTTGT+CGG + Chr4:85979575-85979594 MsG0480023494.01.T01:intron 50.0%
! GAATCATCCGGTACCGAAAC+AGG + Chr4:85976643-85976662 MsG0480023494.01.T01:CDS 50.0%
! GTTCAGTAGTGTTGGGTGTG+AGG + Chr4:85979465-85979484 MsG0480023494.01.T01:intron 50.0%
! TTAGGTACAGCTGCTGGTTG+TGG + Chr4:85979702-85979721 MsG0480023494.01.T01:intron 50.0%
!! ACTCCATGCCTTCTGAAACC+TGG + Chr4:85978593-85978612 MsG0480023494.01.T01:intron 50.0%
AAAGTCCCACCTTGTGGCGT+TGG - Chr4:85977074-85977093 None:intergenic 55.0%
ACCCGACAAAGCGGCTTGAA+AGG - Chr4:85979580-85979599 None:intergenic 55.0%
AGAGACATGCCGCACATTCC+TGG + Chr4:85976749-85976768 MsG0480023494.01.T01:CDS 55.0%
AGAGCCTGGGCACAACGTTA+AGG + Chr4:85978192-85978211 MsG0480023494.01.T01:intron 55.0%
AGCTGAAGAGGCAGCAAAGG+AGG + Chr4:85980178-85980197 MsG0480023494.01.T01:CDS 55.0%
AGCTGGAGTTGCCAAGCATG+GGG + Chr4:85976338-85976357 MsG0480023494.01.T01:CDS 55.0%
AGGATCCCACGTGGGATCTA+GGG - Chr4:85978304-85978323 None:intergenic 55.0%
CAATCACCAGTGTGGGTGCA+TGG + Chr4:85979127-85979146 MsG0480023494.01.T01:intron 55.0%
CATGCACCCACACTGGTGAT+TGG - Chr4:85979129-85979148 None:intergenic 55.0%
CCAAGCATGGGGTGGGAAAA+TGG + Chr4:85976349-85976368 MsG0480023494.01.T01:CDS 55.0%
CGCCATAGCAGAAGCTGAAG+AGG + Chr4:85980166-85980185 MsG0480023494.01.T01:CDS 55.0%
GACTGCTCGAGCAGCATATG+CGG - Chr4:85980132-85980151 None:intergenic 55.0%
GAGCTCCAGGGAGAAGTCTA+AGG + Chr4:85976604-85976623 MsG0480023494.01.T01:CDS 55.0%
GCCAAGACTTACCGTCTCTG+AGG - Chr4:85980282-85980301 None:intergenic 55.0%
GGATATCCATGCACCCACAC+TGG - Chr4:85979136-85979155 None:intergenic 55.0%
GGGAAATGGATCGAGCTCCA+GGG + Chr4:85976592-85976611 MsG0480023494.01.T01:CDS 55.0%
GGGGAGAAACACCTCAGAGA+CGG + Chr4:85980268-85980287 MsG0480023494.01.T01:CDS 55.0%
GTAACAGCCTCTCTGCTTGC+GGG + Chr4:85978254-85978273 MsG0480023494.01.T01:intron 55.0%
TGCTCCCTTAGACTTCTCCC+TGG - Chr4:85976612-85976631 None:intergenic 55.0%
TTCTACGGTGAGGATTGCCC+AGG - Chr4:85979348-85979367 None:intergenic 55.0%
! ACAGCTGCTGGTTGTGGCTT+TGG + Chr4:85979708-85979727 MsG0480023494.01.T01:intron 55.0%
! CAGCTGCTGGTTGTGGCTTT+GGG + Chr4:85979709-85979728 MsG0480023494.01.T01:intron 55.0%
! CATCCCCTATCCTTTGGGAG+TGG + Chr4:85979185-85979204 MsG0480023494.01.T01:intron 55.0%
! CCATTTTCCCACCCCATGCT+TGG - Chr4:85976352-85976371 None:intergenic 55.0%
! CCGCTTTGTCGGGTTGTGTT+TGG + Chr4:85979586-85979605 MsG0480023494.01.T01:intron 55.0%
! CCGGTGTGGATCCCACATTT+TGG - Chr4:85978087-85978106 None:intergenic 55.0%
! GACCTTTTTGGACCAGGACC+AGG - Chr4:85976770-85976789 None:intergenic 55.0%
!!! TTTTGAAGTCTGCCGGTGGC+CGG - Chr4:85978941-85978960 None:intergenic 55.0%
ACCCTCCCTAGATCCCACGT+GGG + Chr4:85978296-85978315 MsG0480023494.01.T01:intron 60.0%
AGAGGCAGCAAAGGAGGCAG+AGG + Chr4:85980184-85980203 MsG0480023494.01.T01:CDS 60.0%
ATCCCACGTGGGATCTAGGG+AGG - Chr4:85978301-85978320 None:intergenic 60.0%
ATGCCGCACATTCCTGGTCC+TGG + Chr4:85976755-85976774 MsG0480023494.01.T01:CDS 60.0%
CCTCTCTGCTTGCGGGTGTA+AGG + Chr4:85978261-85978280 MsG0480023494.01.T01:intron 60.0%
CCTTACACCCGCAAGCAGAG+AGG - Chr4:85978264-85978283 None:intergenic 60.0%
CGGGAAATGGATCGAGCTCC+AGG + Chr4:85976591-85976610 MsG0480023494.01.T01:CDS 60.0%
GAGGATCCCACGTGGGATCT+AGG - Chr4:85978305-85978324 None:intergenic 60.0%
GCCACCTTAACGTTGTGCCC+AGG - Chr4:85978199-85978218 None:intergenic 60.0%
GCCTGGGCACAACGTTAAGG+TGG + Chr4:85978195-85978214 MsG0480023494.01.T01:intron 60.0%
GGACCAGGACCAGGAATGTG+CGG - Chr4:85976761-85976780 None:intergenic 60.0%
GGAGTTGCCAAGCATGGGGT+GGG + Chr4:85976342-85976361 MsG0480023494.01.T01:CDS 60.0%
GGCAGCCTCTTGAGCAGACA+TGG - Chr4:85980111-85980130 None:intergenic 60.0%
GTAGGACCAATACCGGCCAC+CGG + Chr4:85978926-85978945 MsG0480023494.01.T01:intron 60.0%
TACCCTCCCTAGATCCCACG+TGG + Chr4:85978295-85978314 MsG0480023494.01.T01:intron 60.0%
TCCCACGTGGGATCTAGGGA+GGG - Chr4:85978300-85978319 None:intergenic 60.0%
TGGAGTTGCCAAGCATGGGG+TGG + Chr4:85976341-85976360 MsG0480023494.01.T01:CDS 60.0%
TTCGGCCAACGCCACAAGGT+GGG + Chr4:85977066-85977085 MsG0480023494.01.T01:intron 60.0%
TTGGGTGTGAGGCTGTGAGC+AGG + Chr4:85979476-85979495 MsG0480023494.01.T01:intron 60.0%
AGCGCACGAGGATCCCACGT+GGG - Chr4:85978312-85978331 None:intergenic 65.0%
AGTCTGCCGGTGGCCGGTAT+TGG - Chr4:85978935-85978954 None:intergenic 65.0%
CTTCGGCCAACGCCACAAGG+TGG + Chr4:85977065-85977084 MsG0480023494.01.T01:intron 65.0%
TCGCTTCGGCCAACGCCACA+AGG + Chr4:85977062-85977081 MsG0480023494.01.T01:intron 65.0%
!! TGTGGCGTTGGCCGAAGCGA+TGG - Chr4:85977062-85977081 None:intergenic 65.0%
CACGTGGGATCCTCGTGCGC+TGG + Chr4:85978311-85978330 MsG0480023494.01.T01:intron 70.0%
CAGCGCACGAGGATCCCACG+TGG - Chr4:85978313-85978332 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85976288 85980331 85976288 ID=MsG0480023494.01;Name=MsG0480023494.01
Chr4 mRNA 85976288 85980331 85976288 ID=MsG0480023494.01.T01;Parent=MsG0480023494.01;Name=MsG0480023494.01.T01;_AED=0.43;_eAED=0.45;_QI=0|0|0|1|1|1|5|0|310
Chr4 exon 85976288 85976437 85976288 ID=MsG0480023494.01.T01:exon:2925;Parent=MsG0480023494.01.T01
Chr4 exon 85976566 85976786 85976566 ID=MsG0480023494.01.T01:exon:2926;Parent=MsG0480023494.01.T01
Chr4 exon 85977667 85977751 85977667 ID=MsG0480023494.01.T01:exon:2927;Parent=MsG0480023494.01.T01
Chr4 exon 85978930 85979013 85978930 ID=MsG0480023494.01.T01:exon:2928;Parent=MsG0480023494.01.T01
Chr4 exon 85979939 85980331 85979939 ID=MsG0480023494.01.T01:exon:2929;Parent=MsG0480023494.01.T01
Chr4 CDS 85976288 85976437 85976288 ID=MsG0480023494.01.T01:cds;Parent=MsG0480023494.01.T01
Chr4 CDS 85976566 85976786 85976566 ID=MsG0480023494.01.T01:cds;Parent=MsG0480023494.01.T01
Chr4 CDS 85977667 85977751 85977667 ID=MsG0480023494.01.T01:cds;Parent=MsG0480023494.01.T01
Chr4 CDS 85978930 85979013 85978930 ID=MsG0480023494.01.T01:cds;Parent=MsG0480023494.01.T01
Chr4 CDS 85979939 85980331 85979939 ID=MsG0480023494.01.T01:cds;Parent=MsG0480023494.01.T01
Gene Sequence

>MsG0480023494.01.T01

ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGCCAAGCATGGGGTGGGAAAATGGCGTACAATAATCAAGGATCCTGAATTTAATCGTGTCTTGTTTATTCGCTCAAATGTCGATCTCAAGGATAAATGGAGAAATTTGAGTGTGACGGGAAATGGATCGAGCTCCAGGGAGAAGTCTAAGGGAGCAATCAAAAGGGTGAATCATCCGGTACCGAAACAGGATGACAACTCTATGGCTATCACTGCCGTTACTGGTCCATCCGATGATGATGAAATTGTTGATGCCCAGCCTCTTCAAGTCTCAAGAGACATGCCGCACATTCCTGGTCCTGGTCCAAAAAGATTAGATAACCTTATATTGGAAGCTATATCTAGCTTGAATGAGCTTGGTGGTTCTAATACAACAACTATTGCTTCTTTCATAGAGGACCAATACCGGCCACCGGCAGACTTCAAAAAGTTGTTGTCAGCAAAACTAAAGTATCTTACATCTAGCGGAAAACTGATCAAGGTGAAACGCAGGTATAGGATTGCACCTACCCCTGCATATTCAGACAGAGGAAGACACCCACCCATGTTATTATTGGAAGGGAGGCAGAAAATCTCTATGAAATTGGACAGGGATGAGAGAAAATACCCTACAAAGTCTGAGATAGATTTAGAAATAGAAAAGGTAAGGTCCATGTCTGCTCAAGAGGCTGCCGCATATGCTGCTCGAGCAGTCGCTGATGCAGAAGCCGCCATAGCAGAAGCTGAAGAGGCAGCAAAGGAGGCAGAGGCTGCAGAAGCAGATGCAGCTGCAGCAGAAGCTTTTGCAGAAGCTGCAATGAAAACACTGAAGGGGAGAAACACCTCAGAGACGGTAAGTCTTGGCTTTTCCTTTTATTGTAATACTATAACATGA
Protein sequence

>MsG0480023494.01.T01

MGAPKQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEFNRVLFIRSNVDLKDKWRNLSVTGNGSSSREKSKGAIKRVNHPVPKQDDNSMAITAVTGPSDDDEIVDAQPLQVSRDMPHIPGPGPKRLDNLILEAISSLNELGGSNTTTIASFIEDQYRPPADFKKLLSAKLKYLTSSGKLIKVKRRYRIAPTPAYSDRGRHPPMLLLEGRQKISMKLDRDERKYPTKSEIDLEIEKVRSMSAQEAAAYAARAVADAEAAIAEAEEAAKEAEAAEADAAAAEAFAEAAMKTLKGRNTSETVSLGFSFYCNTIT*