Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023618.01.T01 | XP_013447014.1 | 99.351 | 154 | 1 | 0 | 46 | 199 | 1 | 154 | 1.64E-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023618.01.T01 | Q1G3Q4 | 34.356 | 163 | 102 | 3 | 8 | 169 | 2 | 160 | 2.35E-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023618.01.T01 | A0A072TV38 | 99.351 | 154 | 1 | 0 | 46 | 199 | 1 | 154 | 7.84e-109 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480023618.01.T01 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023618.01.T01 | MTR_8g097310 | 99.351 | 154 | 1 | 0 | 46 | 199 | 1 | 154 | 1.99e-112 | 317 |
| MsG0480023618.01.T01 | MTR_5g077740 | 38.889 | 198 | 98 | 3 | 2 | 199 | 13 | 187 | 8.12e-44 | 145 |
| MsG0480023618.01.T01 | MTR_7g102790 | 34.483 | 203 | 116 | 6 | 9 | 198 | 4 | 202 | 7.24e-29 | 107 |
| MsG0480023618.01.T01 | MTR_4g094680 | 39.456 | 147 | 78 | 4 | 10 | 149 | 20 | 162 | 2.73e-28 | 106 |
| MsG0480023618.01.T01 | MTR_1g062160 | 32.323 | 198 | 120 | 5 | 12 | 198 | 7 | 201 | 4.63e-27 | 102 |
| MsG0480023618.01.T01 | MTR_4g078170 | 30.303 | 198 | 123 | 6 | 12 | 198 | 15 | 208 | 4.05e-25 | 97.8 |
| MsG0480023618.01.T01 | MTR_4g116300 | 36.111 | 144 | 87 | 3 | 10 | 152 | 4 | 143 | 5.99e-25 | 98.2 |
| MsG0480023618.01.T01 | MTR_2g055210 | 31.148 | 183 | 108 | 6 | 12 | 181 | 102 | 279 | 2.04e-24 | 98.2 |
| MsG0480023618.01.T01 | MTR_5g007230 | 29.208 | 202 | 135 | 5 | 1 | 198 | 10 | 207 | 4.17e-24 | 95.1 |
| MsG0480023618.01.T01 | MTR_5g030130 | 31.343 | 201 | 119 | 6 | 12 | 198 | 35 | 230 | 1.47e-23 | 94.4 |
| MsG0480023618.01.T01 | MTR_2g036170 | 34.395 | 157 | 90 | 6 | 11 | 165 | 36 | 181 | 1.62e-22 | 91.7 |
| MsG0480023618.01.T01 | MTR_8g066820 | 30.000 | 200 | 123 | 7 | 12 | 198 | 33 | 228 | 4.32e-22 | 90.1 |
| MsG0480023618.01.T01 | MTR_8g105930 | 32.432 | 148 | 75 | 5 | 14 | 140 | 15 | 158 | 1.24e-18 | 81.3 |
| MsG0480023618.01.T01 | MTR_5g030130 | 34.351 | 131 | 80 | 4 | 12 | 140 | 35 | 161 | 2.13e-18 | 79.3 |
| MsG0480023618.01.T01 | MTR_2g084525 | 30.769 | 169 | 102 | 8 | 14 | 170 | 6 | 171 | 1.37e-14 | 70.1 |
| MsG0480023618.01.T01 | MTR_2g084510 | 28.216 | 241 | 115 | 10 | 14 | 199 | 5 | 242 | 2.49e-14 | 69.3 |
| MsG0480023618.01.T01 | MTR_1g032880 | 34.043 | 141 | 81 | 4 | 58 | 196 | 27 | 157 | 7.27e-14 | 66.6 |
| MsG0480023618.01.T01 | MTR_2g060500 | 29.787 | 141 | 77 | 6 | 14 | 139 | 12 | 145 | 5.60e-12 | 61.2 |
| MsG0480023618.01.T01 | MTR_2g060540 | 29.787 | 141 | 77 | 6 | 14 | 139 | 12 | 145 | 6.67e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023618.01.T01 | AT1G31040 | 32.900 | 231 | 106 | 8 | 11 | 198 | 18 | 242 | 6.99e-29 | 108 |
| MsG0480023618.01.T01 | AT2G27930 | 36.946 | 203 | 99 | 7 | 9 | 198 | 1 | 187 | 1.63e-28 | 105 |
| MsG0480023618.01.T01 | AT2G27930 | 36.946 | 203 | 99 | 7 | 9 | 198 | 1 | 187 | 1.63e-28 | 105 |
| MsG0480023618.01.T01 | AT2G01818 | 33.803 | 213 | 113 | 9 | 13 | 199 | 12 | 222 | 1.53e-27 | 104 |
| MsG0480023618.01.T01 | AT5G46710 | 33.019 | 212 | 103 | 6 | 12 | 198 | 12 | 209 | 2.60e-27 | 103 |
| MsG0480023618.01.T01 | AT5G46710 | 33.019 | 212 | 103 | 6 | 12 | 198 | 28 | 225 | 2.89e-27 | 103 |
| MsG0480023618.01.T01 | AT2G12646 | 34.356 | 163 | 102 | 3 | 8 | 169 | 2 | 160 | 2.40e-26 | 102 |
| MsG0480023618.01.T01 | AT2G12646 | 34.356 | 163 | 102 | 3 | 8 | 169 | 2 | 160 | 2.40e-26 | 102 |
| MsG0480023618.01.T01 | AT1G32700 | 32.195 | 205 | 123 | 6 | 6 | 198 | 6 | 206 | 5.68e-26 | 99.8 |
| MsG0480023618.01.T01 | AT2G12646 | 35.000 | 160 | 99 | 3 | 11 | 169 | 2 | 157 | 1.48e-25 | 99.8 |
| MsG0480023618.01.T01 | AT1G43000 | 32.407 | 216 | 117 | 8 | 8 | 198 | 5 | 216 | 4.82e-25 | 97.4 |
| MsG0480023618.01.T01 | AT1G43000 | 32.407 | 216 | 117 | 8 | 8 | 198 | 12 | 223 | 4.90e-25 | 97.8 |
| MsG0480023618.01.T01 | AT4G17900 | 32.143 | 196 | 121 | 5 | 12 | 198 | 20 | 212 | 7.75e-25 | 97.1 |
| MsG0480023618.01.T01 | AT4G17900 | 32.143 | 196 | 121 | 5 | 12 | 198 | 34 | 226 | 9.57e-25 | 97.1 |
| MsG0480023618.01.T01 | AT1G76590 | 32.778 | 180 | 107 | 6 | 3 | 180 | 9 | 176 | 9.61e-25 | 97.4 |
| MsG0480023618.01.T01 | AT3G60670 | 36.296 | 135 | 81 | 3 | 10 | 143 | 5 | 135 | 4.33e-24 | 95.9 |
| MsG0480023618.01.T01 | AT1G21000 | 28.511 | 235 | 116 | 9 | 12 | 198 | 16 | 246 | 2.71e-22 | 90.9 |
| MsG0480023618.01.T01 | AT1G21000 | 28.511 | 235 | 116 | 9 | 12 | 198 | 13 | 243 | 2.84e-22 | 90.9 |
| MsG0480023618.01.T01 | AT2G27930 | 38.462 | 143 | 74 | 5 | 9 | 140 | 1 | 140 | 1.49e-20 | 84.7 |
| MsG0480023618.01.T01 | AT2G27930 | 38.462 | 143 | 74 | 5 | 9 | 140 | 1 | 140 | 1.49e-20 | 84.7 |
| MsG0480023618.01.T01 | AT5G46710 | 36.641 | 131 | 78 | 4 | 12 | 140 | 28 | 155 | 3.15e-20 | 83.6 |
| MsG0480023618.01.T01 | AT1G32700 | 31.765 | 170 | 101 | 5 | 40 | 198 | 2 | 167 | 5.60e-19 | 80.5 |
| MsG0480023618.01.T01 | AT2G27930 | 33.793 | 145 | 70 | 4 | 65 | 198 | 61 | 190 | 1.60e-12 | 63.9 |
| MsG0480023618.01.T01 | AT2G27930 | 33.793 | 145 | 70 | 4 | 65 | 198 | 61 | 190 | 1.60e-12 | 63.9 |
| MsG0480023618.01.T01 | AT2G01818 | 33.121 | 157 | 80 | 7 | 66 | 199 | 4 | 158 | 1.02e-11 | 60.8 |
Find 43 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTTCTTTGGGAAAA+AGG | 0.129448 | 4:-87700396 | MsG0480023618.01.T01:CDS |
| AATAAAGTTTAGAATTATTT+TGG | 0.156719 | 4:-87700223 | MsG0480023618.01.T01:three_prime_UTR |
| GGGAACTTCTGGACCTTCTT+TGG | 0.210937 | 4:-87700404 | MsG0480023618.01.T01:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | 4:-87700415 | MsG0480023618.01.T01:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | 4:+87701663 | None:intergenic |
| TATAATGCCATATGAAAATA+AGG | 0.324258 | 4:+87700174 | None:intergenic |
| GGAACTTCTGGACCTTCTTT+GGG | 0.337965 | 4:-87700403 | MsG0480023618.01.T01:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.344627 | 4:+87700481 | None:intergenic |
| CACCAGATGATATACAATAT+TGG | 0.377985 | 4:+87701550 | None:intergenic |
| TTGATGCTATCTCACTGAAT+TGG | 0.402058 | 4:+87700725 | None:intergenic |
| CTCCTCGGGACCTTCCATCC+AGG | 0.410186 | 4:-87700455 | MsG0480023618.01.T01:CDS |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | 4:-87700437 | MsG0480023618.01.T01:CDS |
| TAGTCATCACCTTGCAAGAA+AGG | 0.434907 | 4:+87700635 | None:intergenic |
| GATTAAATCTACTACTCATC+TGG | 0.437954 | 4:-87700257 | MsG0480023618.01.T01:three_prime_UTR |
| TCCTCGGGACCTTCCATCCA+GGG | 0.458929 | 4:-87700454 | MsG0480023618.01.T01:CDS |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | 4:+87700658 | None:intergenic |
| GTACTGTACAGATTGCAATA+TGG | 0.468846 | 4:-87701580 | MsG0480023618.01.T01:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | 4:-87700774 | MsG0480023618.01.T01:intron |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | 4:+87700437 | None:intergenic |
| CTACTGTGCCCTTTCTTGCA+AGG | 0.513621 | 4:-87700644 | MsG0480023618.01.T01:intron |
| AACACCACTTGAGTCCTCCT+CGG | 0.524378 | 4:-87700470 | MsG0480023618.01.T01:CDS |
| ACACCACTTGAGTCCTCCTC+GGG | 0.531101 | 4:-87700469 | MsG0480023618.01.T01:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | 4:+87700427 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | 4:-87701552 | MsG0480023618.01.T01:CDS |
| TAAAAGAAGGGAGATCTATG+AGG | 0.542712 | 4:+87700358 | None:intergenic |
| AGTCATCACCTTGCAAGAAA+GGG | 0.543071 | 4:+87700636 | None:intergenic |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | 4:-87701617 | MsG0480023618.01.T01:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | 4:+87700430 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | 4:+87700441 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | 4:-87701478 | MsG0480023618.01.T01:CDS |
| ACCCTGGATGGAAGGTCCCG+AGG | 0.582964 | 4:+87700453 | None:intergenic |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | 4:-87700767 | MsG0480023618.01.T01:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | 4:-87700428 | MsG0480023618.01.T01:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | 4:+87700445 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | 4:-87701502 | MsG0480023618.01.T01:CDS |
| GACATGGTTTAATTTGCAGG+AGG | 0.620981 | 4:-87701709 | None:intergenic |
| GCTATCTCACTGAATTGGCG+AGG | 0.635923 | 4:+87700730 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | 4:-87700425 | MsG0480023618.01.T01:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | 4:+87700495 | None:intergenic |
| GGTCCCGAGGAGGACTCAAG+TGG | 0.671750 | 4:+87700466 | None:intergenic |
| AATGCCATATGAAAATAAGG+AGG | 0.673457 | 4:+87700177 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | 4:-87700424 | MsG0480023618.01.T01:CDS |
| CTGGATGGAAGGTCCCGAGG+AGG | 0.711333 | 4:+87700456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAGTTTAGAATTATTT+TGG | - | Chr4:87701655-87701674 | MsG0480023618.01.T01:CDS | 10.0% |
| !! | AATATATAGACATATTTACA+AGG | - | Chr4:87700376-87700395 | MsG0480023618.01.T01:CDS | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | + | Chr4:87700364-87700383 | None:intergenic | 15.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | + | Chr4:87700976-87700995 | None:intergenic | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | + | Chr4:87700975-87700994 | None:intergenic | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | - | Chr4:87700790-87700809 | MsG0480023618.01.T01:intron | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | - | Chr4:87700789-87700808 | MsG0480023618.01.T01:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | - | Chr4:87700866-87700885 | MsG0480023618.01.T01:intron | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | - | Chr4:87700233-87700252 | MsG0480023618.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | - | Chr4:87701339-87701358 | MsG0480023618.01.T01:intron | 20.0% |
| ! | ACACAGTAAAAAAATTGGTT+CGG | + | Chr4:87701062-87701081 | None:intergenic | 25.0% |
| ! | ACCAAACACAGTAAAAAAAT+TGG | + | Chr4:87701067-87701086 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | - | Chr4:87700201-87700220 | MsG0480023618.01.T01:three_prime_UTR | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | + | Chr4:87700895-87700914 | None:intergenic | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | + | Chr4:87700361-87700380 | None:intergenic | 25.0% |
| !!! | ACCAATTTTTTTACTGTGTT+TGG | - | Chr4:87701063-87701082 | MsG0480023618.01.T01:intron | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | - | Chr4:87700798-87700817 | MsG0480023618.01.T01:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | + | Chr4:87700198-87700217 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | + | Chr4:87700199-87700218 | None:intergenic | 25.0% |
| CACCAGATGATATACAATAT+TGG | + | Chr4:87700331-87700350 | None:intergenic | 30.0% | |
| GATTAAATCTACTACTCATC+TGG | - | Chr4:87701621-87701640 | MsG0480023618.01.T01:CDS | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | - | Chr4:87700326-87700345 | MsG0480023618.01.T01:three_prime_UTR | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | - | Chr4:87701493-87701512 | MsG0480023618.01.T01:CDS | 30.0% | |
| TTTGGGAAAAAGGAAAAGAA+AGG | - | Chr4:87701492-87701511 | MsG0480023618.01.T01:CDS | 30.0% | |
| ! | AAAACGACTTTACTAGCTTA+AGG | - | Chr4:87700666-87700685 | MsG0480023618.01.T01:CDS | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | - | Chr4:87700667-87700686 | MsG0480023618.01.T01:CDS | 30.0% |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | + | Chr4:87701535-87701554 | None:intergenic | 30.0% |
| !! | CTACTTTTCCTTCATATTGT+TGG | - | Chr4:87700629-87700648 | MsG0480023618.01.T01:intron | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | - | Chr4:87701534-87701553 | MsG0480023618.01.T01:CDS | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | - | Chr4:87701080-87701099 | MsG0480023618.01.T01:intron | 30.0% |
| GAGAATCTCCAACAATATGA+AGG | + | Chr4:87700640-87700659 | None:intergenic | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | - | Chr4:87700298-87700317 | MsG0480023618.01.T01:three_prime_UTR | 35.0% | |
| GTTCTACTCATCAAATTCGT+AGG | - | Chr4:87700261-87700280 | MsG0480023618.01.T01:three_prime_UTR | 35.0% | |
| TAAAAGAAGGGAGATCTATG+AGG | + | Chr4:87701523-87701542 | None:intergenic | 35.0% | |
| TTACAAAAGCAACAGGAAAG+TGG | - | Chr4:87701111-87701130 | MsG0480023618.01.T01:intron | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | + | Chr4:87701156-87701175 | None:intergenic | 35.0% | |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | + | Chr4:87701490-87701509 | None:intergenic | 35.0% |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | + | Chr4:87701191-87701210 | None:intergenic | 35.0% |
| ! | TTTTGTCCTTCACTAACCAT+GGG | + | Chr4:87700850-87700869 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | + | Chr4:87700851-87700870 | None:intergenic | 35.0% |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | + | Chr4:87701536-87701555 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | - | Chr4:87701533-87701552 | MsG0480023618.01.T01:CDS | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | + | Chr4:87700949-87700968 | None:intergenic | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | - | Chr4:87700208-87700227 | MsG0480023618.01.T01:three_prime_UTR | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | + | Chr4:87700950-87700969 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | + | Chr4:87700948-87700967 | None:intergenic | 35.0% |
| !! | TTTTGATTGCTCAGAGATTC+AGG | - | Chr4:87700430-87700449 | MsG0480023618.01.T01:CDS | 35.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | + | Chr4:87700218-87700237 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | + | Chr4:87701245-87701264 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | + | Chr4:87701286-87701305 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | - | Chr4:87701104-87701123 | MsG0480023618.01.T01:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | + | Chr4:87701223-87701242 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | + | Chr4:87701246-87701265 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | + | Chr4:87701297-87701316 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | - | Chr4:87701372-87701391 | MsG0480023618.01.T01:intron | 40.0% | |
| ! | TTTTGGATAGTTAGTACCCC+TGG | - | Chr4:87700815-87700834 | MsG0480023618.01.T01:intron | 40.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | - | Chr4:87700742-87700761 | MsG0480023618.01.T01:CDS | 45.0% | |
| AGTTGTCCCATGGTTAGTGA+AGG | - | Chr4:87700841-87700860 | MsG0480023618.01.T01:intron | 45.0% | |
| GGAACTTCTGGACCTTCTTT+GGG | - | Chr4:87701475-87701494 | MsG0480023618.01.T01:CDS | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | - | Chr4:87701482-87701501 | MsG0480023618.01.T01:CDS | 45.0% |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | - | Chr4:87700400-87700419 | MsG0480023618.01.T01:CDS | 45.0% |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | + | Chr4:87701400-87701419 | None:intergenic | 45.0% |
| AACACCACTTGAGTCCTCCT+CGG | - | Chr4:87701408-87701427 | MsG0480023618.01.T01:intron | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | + | Chr4:87700836-87700855 | None:intergenic | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | + | Chr4:87700835-87700854 | None:intergenic | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | - | Chr4:87701454-87701473 | MsG0480023618.01.T01:CDS | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | - | Chr4:87701234-87701253 | MsG0480023618.01.T01:intron | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | - | Chr4:87701463-87701482 | MsG0480023618.01.T01:CDS | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | + | Chr4:87701386-87701405 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | + | Chr4:87701151-87701170 | None:intergenic | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | - | Chr4:87701474-87701493 | MsG0480023618.01.T01:CDS | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | - | Chr4:87701453-87701472 | MsG0480023618.01.T01:CDS | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | - | Chr4:87701450-87701469 | MsG0480023618.01.T01:CDS | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | + | Chr4:87701454-87701473 | None:intergenic | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | + | Chr4:87701451-87701470 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCCTCCTC+GGG | - | Chr4:87701409-87701428 | MsG0480023618.01.T01:intron | 55.0% | |
| CCATGGGACAACTTGTCCAG+GGG | + | Chr4:87700834-87700853 | None:intergenic | 55.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | + | Chr4:87701440-87701459 | None:intergenic | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | - | Chr4:87700831-87700850 | MsG0480023618.01.T01:intron | 60.0% | |
| TCCTCGGGACCTTCCATCCA+GGG | - | Chr4:87701424-87701443 | MsG0480023618.01.T01:intron | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | + | Chr4:87701436-87701455 | None:intergenic | 60.0% | |
| ACCCTGGATGGAAGGTCCCG+AGG | + | Chr4:87701428-87701447 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | - | Chr4:87701441-87701460 | MsG0480023618.01.T01:intron | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | + | Chr4:87701444-87701463 | None:intergenic | 65.0% | |
| CTCCTCGGGACCTTCCATCC+AGG | - | Chr4:87701423-87701442 | MsG0480023618.01.T01:intron | 65.0% | |
| CTGGATGGAAGGTCCCGAGG+AGG | + | Chr4:87701425-87701444 | None:intergenic | 65.0% | |
| GGTCCCGAGGAGGACTCAAG+TGG | + | Chr4:87701415-87701434 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 87700182 | 87701718 | 87700182 | ID=MsG0480023618.01;Name=MsG0480023618.01 |
| Chr4 | mRNA | 87700182 | 87701718 | 87700182 | ID=MsG0480023618.01.T01;Parent=MsG0480023618.01;Name=MsG0480023618.01.T01;_AED=0.47;_eAED=0.47;_QI=0|1|0.66|1|1|1|3|175|199 |
| Chr4 | exon | 87700182 | 87700539 | 87700182 | ID=MsG0480023618.01.T01:exon:21460;Parent=MsG0480023618.01.T01 |
| Chr4 | exon | 87700645 | 87700791 | 87700645 | ID=MsG0480023618.01.T01:exon:21459;Parent=MsG0480023618.01.T01 |
| Chr4 | exon | 87701449 | 87701718 | 87701449 | ID=MsG0480023618.01.T01:exon:21458;Parent=MsG0480023618.01.T01 |
| Chr4 | CDS | 87701449 | 87701718 | 87701449 | ID=MsG0480023618.01.T01:cds;Parent=MsG0480023618.01.T01 |
| Chr4 | CDS | 87700645 | 87700791 | 87700645 | ID=MsG0480023618.01.T01:cds;Parent=MsG0480023618.01.T01 |
| Chr4 | CDS | 87700357 | 87700539 | 87700357 | ID=MsG0480023618.01.T01:cds;Parent=MsG0480023618.01.T01 |
| Chr4 | three_prime_UTR | 87700182 | 87700356 | 87700182 | ID=MsG0480023618.01.T01:three_prime_utr;Parent=MsG0480023618.01.T01 |
| Gene Sequence |
| Protein sequence |
