AlfalfaGEDB | MsG0480023618.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023618.01

KEGG: -
GO: GO:0005622 GO:0008270
PFAM: PF00643 PF04640

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023618.01.T01	XP_013447014.1	99.351	154	1	0	46	199	1	154	1.64E-108	317

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023618.01.T01	Q1G3Q4	34.356	163	102	3	8	169	2	160	2.35E-25	102

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023618.01.T01	A0A072TV38	99.351	154	1	0	46	199	1	154	7.84e-109	317

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0480023618.01.T01	TF	PLATZ

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023618.01.T01	MTR_8g097310	99.351	154	1	0	46	199	1	154	1.99e-112	317
MsG0480023618.01.T01	MTR_5g077740	38.889	198	98	3	2	199	13	187	8.12e-44	145
MsG0480023618.01.T01	MTR_7g102790	34.483	203	116	6	9	198	4	202	7.24e-29	107
MsG0480023618.01.T01	MTR_4g094680	39.456	147	78	4	10	149	20	162	2.73e-28	106
MsG0480023618.01.T01	MTR_1g062160	32.323	198	120	5	12	198	7	201	4.63e-27	102
MsG0480023618.01.T01	MTR_4g078170	30.303	198	123	6	12	198	15	208	4.05e-25	97.8
MsG0480023618.01.T01	MTR_4g116300	36.111	144	87	3	10	152	4	143	5.99e-25	98.2
MsG0480023618.01.T01	MTR_2g055210	31.148	183	108	6	12	181	102	279	2.04e-24	98.2
MsG0480023618.01.T01	MTR_5g007230	29.208	202	135	5	1	198	10	207	4.17e-24	95.1
MsG0480023618.01.T01	MTR_5g030130	31.343	201	119	6	12	198	35	230	1.47e-23	94.4

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023618.01.T01	AT1G31040	32.900	231	106	8	11	198	18	242	6.99e-29	108
MsG0480023618.01.T01	AT2G27930	36.946	203	99	7	9	198	1	187	1.63e-28	105
MsG0480023618.01.T01	AT2G27930	36.946	203	99	7	9	198	1	187	1.63e-28	105
MsG0480023618.01.T01	AT2G01818	33.803	213	113	9	13	199	12	222	1.53e-27	104
MsG0480023618.01.T01	AT5G46710	33.019	212	103	6	12	198	12	209	2.60e-27	103
MsG0480023618.01.T01	AT5G46710	33.019	212	103	6	12	198	28	225	2.89e-27	103
MsG0480023618.01.T01	AT2G12646	34.356	163	102	3	8	169	2	160	2.40e-26	102
MsG0480023618.01.T01	AT2G12646	34.356	163	102	3	8	169	2	160	2.40e-26	102
MsG0480023618.01.T01	AT1G32700	32.195	205	123	6	6	198	6	206	5.68e-26	99.8
MsG0480023618.01.T01	AT2G12646	35.000	160	99	3	11	169	2	157	1.48e-25	99.8

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Find 43 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCCTCAAGCCAAAT+TGG	0.306260	4:+87701663	None:intergenic
AACACCACTTGAGTCCTCCT+CGG	0.524378	4:-87700470	MsG0480023618.01.T01:CDS
AATAAAGTTTAGAATTATTT+TGG	0.156719	4:-87700223	MsG0480023618.01.T01:three_prime_UTR
AATATATAGACATATTTACA+AGG	0.614023	4:-87701502	MsG0480023618.01.T01:CDS
AATGCCATATGAAAATAAGG+AGG	0.673457	4:+87700177	None:intergenic
ACACCACTTGAGTCCTCCTC+GGG	0.531101	4:-87700469	MsG0480023618.01.T01:CDS
ACCCTGGATGGAAGGTCCCG+AGG	0.582964	4:+87700453	None:intergenic
AGTCATCACCTTGCAAGAAA+GGG	0.543071	4:+87700636	None:intergenic
ATGCTGAGGAGGACCCTGGA+TGG	0.559712	4:+87700441	None:intergenic
CACCAGATGATATACAATAT+TGG	0.377985	4:+87701550	None:intergenic

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CACCAGATGATATACAATAT+TGG	+	Chr4:87700331-87700350	None:intergenic	30.0%
GATTAAATCTACTACTCATC+TGG	-	Chr4:87701621-87701640	MsG0480023618.01.T01:CDS	30.0%
TGCCAATATTGTATATCATC+TGG	-	Chr4:87700326-87700345	MsG0480023618.01.T01:three_prime_UTR	30.0%
TTGGGAAAAAGGAAAAGAAA+GGG	-	Chr4:87701493-87701512	MsG0480023618.01.T01:CDS	30.0%
TTTGGGAAAAAGGAAAAGAA+AGG	-	Chr4:87701492-87701511	MsG0480023618.01.T01:CDS	30.0%
GAGAATCTCCAACAATATGA+AGG	+	Chr4:87700640-87700659	None:intergenic	35.0%
GTACTGTACAGATTGCAATA+TGG	-	Chr4:87700298-87700317	MsG0480023618.01.T01:three_prime_UTR	35.0%
GTTCTACTCATCAAATTCGT+AGG	-	Chr4:87700261-87700280	MsG0480023618.01.T01:three_prime_UTR	35.0%
TAAAAGAAGGGAGATCTATG+AGG	+	Chr4:87701523-87701542	None:intergenic	35.0%
TTACAAAAGCAACAGGAAAG+TGG	-	Chr4:87701111-87701130	MsG0480023618.01.T01:intron	35.0%

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	87700182	87701718	87700182	ID=MsG0480023618.01;Name=MsG0480023618.01
Chr4	mRNA	87700182	87701718	87700182	ID=MsG0480023618.01.T01;Parent=MsG0480023618.01;Name=MsG0480023618.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|1\|0.66\|1\|1\|1\|3\|175\|199
Chr4	exon	87700182	87700539	87700182	ID=MsG0480023618.01.T01:exon:21460;Parent=MsG0480023618.01.T01
Chr4	exon	87700645	87700791	87700645	ID=MsG0480023618.01.T01:exon:21459;Parent=MsG0480023618.01.T01
Chr4	exon	87701449	87701718	87701449	ID=MsG0480023618.01.T01:exon:21458;Parent=MsG0480023618.01.T01
Chr4	CDS	87701449	87701718	87701449	ID=MsG0480023618.01.T01:cds;Parent=MsG0480023618.01.T01
Chr4	CDS	87700645	87700791	87700645	ID=MsG0480023618.01.T01:cds;Parent=MsG0480023618.01.T01
Chr4	CDS	87700357	87700539	87700357	ID=MsG0480023618.01.T01:cds;Parent=MsG0480023618.01.T01
Chr4	three_prime_UTR	87700182	87700356	87700182	ID=MsG0480023618.01.T01:three_prime_utr;Parent=MsG0480023618.01.T01

Gene Sequence

>MsG0480023618.01.T01

TTGCAGGAGGCAACCCAAAGTAATGTTGAAAAACCAATTTGGCTTGAGGCTCTTTTGAGAGAAAATTATTTTGGCTCATGTTCTACTCATCAAATTCGTAGGAATGAGCTGAAAAAGTACTGTACAGATTGCAATATGGTATGTTGCCAATATTGTATATCATCTGGTGTTCATCGCCACCACAAAATACTGAAAATATATAGACATATTTACAAGGATGTTGTTGCTCTGAGTGCTATGGAAAAATATTTTGATTGCTCAGAGATTCAGACTTACAAAAGCAACAGGAAAGTGGTTATTTCTCTGAAACCTCGCCAATTCAGTGAGATAGCATCAAATGCTGAAGACTCCTGTGAAGTTTGCAACAAAAAGTTGAATGAACCTGATTTATATCGCTACTGTGCCCTTTCTTGCAAGGTTGAAGCAGTTTCAAAAAAGTCCGAGTCTGAGGATCCAGTTAGCACAACACCACTTGAGTCCTCCTCGGGACCTTCCATCCAGGGTCCTCCTCAGCATCAGGAAACACAGGAGGGAACTTCTGGACCTTCTTTGGGAAAAAGGAAAAGAAAGGGAATACCTCATAGATCTCCCTTCTTTTAA

Protein sequence

>MsG0480023618.01.T01

LQEATQSNVEKPIWLEALLRENYFGSCSTHQIRRNELKKYCTDCNMVCCQYCISSGVHRHHKILKIYRHIYKDVVALSAMEKYFDCSEIQTYKSNRKVVISLKPRQFSEIASNAEDSCEVCNKKLNEPDLYRYCALSCKVEAVSKKSESEDPVSTTPLESSSGPSIQGPPQHQETQEGTSGPSLGKRKRKGIPHRSPFF*