AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480024004.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480024004.01.T01 MTR_6g065170 87.611 113 14 0 1 113 1 113 4.44e-63 196
MsG0480024004.01.T01 MTR_8g106940 86.726 113 15 0 1 113 1 113 2.57e-61 191
MsG0480024004.01.T01 MTR_3g018640 64.602 113 40 0 1 113 1 113 3.35e-40 136
MsG0480024004.01.T01 MTR_5g093460 62.037 108 40 1 5 112 134 240 1.41e-32 119
MsG0480024004.01.T01 MTR_5g093460 78.750 80 16 1 34 113 1 79 3.74e-31 115
MsG0480024004.01.T01 MTR_1g056470 53.982 113 48 1 1 113 1 109 9.64e-30 108
MsG0480024004.01.T01 MTR_3g053170 72.368 76 21 0 38 113 26 101 1.12e-27 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480024004.01.T01 AT3G20800 56.897 116 36 3 6 113 5 114 1.79e-29 109
MsG0480024004.01.T01 AT5G12980 63.158 76 28 0 38 113 35 110 4.53e-25 97.4

Find 23 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTGCATCTTTATTA+TGG 0.166706 4:+92268321 MsG0480024004.01.T01:CDS
TCTTTATTATGGAATTCTTT+TGG 0.317731 4:+92268332 MsG0480024004.01.T01:CDS
CATAATAAAGATGCAAGTTC+TGG 0.318259 4:-92268320 None:intergenic
GAATTATCTCGCTTAAAATA+AGG 0.331775 4:-92270121 None:intergenic
AGGTAACCCAATGACTTCTT+TGG 0.357869 4:-92270101 None:intergenic
GTTCCATGCAAGCCATCGTT+TGG 0.360758 4:-92266588 None:intergenic
TAACGTTCTTGCACTACTTC+AGG 0.385082 4:+92268822 MsG0480024004.01.T01:CDS
TGCTTAAGCAACATGGAGAT+TGG 0.389189 4:+92270149 MsG0480024004.01.T01:CDS
GTTAACACCAAAGAAGTCAT+TGG 0.411687 4:+92270094 MsG0480024004.01.T01:CDS
TTCCATGCAAGCCATCGTTT+GGG 0.414939 4:-92266587 None:intergenic
TGCCCAAACGATGGCTTGCA+TGG 0.424700 4:+92266585 MsG0480024004.01.T01:CDS
TTCTTCATTGTGAGCGAATG+AGG 0.447112 4:-92266511 None:intergenic
GCAAGCCATCGTTTGGGCAG+TGG 0.471268 4:-92266581 None:intergenic
TTAACACCAAAGAAGTCATT+GGG 0.480982 4:+92270095 MsG0480024004.01.T01:CDS
TCTTCGTCTGTAGCTCCTCT+TGG 0.510704 4:+92266538 MsG0480024004.01.T01:CDS
CGCTCTTCGTGTGCTCTCCA+AGG 0.522456 4:+92266651 MsG0480024004.01.T01:CDS
TCCATTGTGCTTAAGCAACA+TGG 0.523480 4:+92270142 MsG0480024004.01.T01:CDS
TCCATGTTGCTTAAGCACAA+TGG 0.605260 4:-92270143 None:intergenic
AAGAACCACTGCCCAAACGA+TGG 0.643808 4:+92266576 MsG0480024004.01.T01:CDS
GATTGTGCTAGAGTAAGAGT+CGG 0.683303 4:-92268787 None:intergenic
GATTGCTGAGTTCAATAACA+AGG 0.688379 4:-92266612 None:intergenic
GATTGAGTAGAAGTACCAAG+AGG 0.696831 4:-92266553 None:intergenic
TGTGCTAGAGTAAGAGTCGG+TGG 0.715335 4:-92268784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAAATAATATAATT+TGG - Chr4:92269652-92269671 None:intergenic 0.0%
!!! ATTTTAAAATAATATAATTT+GGG - Chr4:92269651-92269670 None:intergenic 0.0%
!! AAAAAAAAATAAAGTATAAG+TGG - Chr4:92267356-92267375 None:intergenic 10.0%
!! AAAAAAATTTAAAGATACAT+CGG - Chr4:92267065-92267084 None:intergenic 10.0%
!! AAAACATATAAACATAATTT+GGG - Chr4:92268477-92268496 None:intergenic 10.0%
!! AAATTTGTATCAATAAATTA+TGG + Chr4:92269550-92269569 MsG0480024004.01.T01:intron 10.0%
!! TAAATACAAAATATAATCAT+GGG + Chr4:92269218-92269237 MsG0480024004.01.T01:intron 10.0%
!! TGAATGAAATTATATATTAT+TGG + Chr4:92268389-92268408 MsG0480024004.01.T01:intron 10.0%
!! TTAAATACAAAATATAATCA+TGG + Chr4:92269217-92269236 MsG0480024004.01.T01:intron 10.0%
!!! ATTGATTTTTAGTTATATTT+GGG - Chr4:92268913-92268932 None:intergenic 10.0%
!!! ATTTTATATTATAATTTGGT+TGG + Chr4:92268213-92268232 MsG0480024004.01.T01:intron 10.0%
!!! CTTTATTTTTTTTTAAAACT+CGG + Chr4:92267362-92267381 MsG0480024004.01.T01:intron 10.0%
!!! TCTTTTTATAAAAATATCTA+AGG - Chr4:92267635-92267654 None:intergenic 10.0%
!!! TGACATTTTATATTATAATT+TGG + Chr4:92268209-92268228 MsG0480024004.01.T01:intron 10.0%
!!! TTTTAAATTTGAGTATATTA+TGG + Chr4:92269173-92269192 MsG0480024004.01.T01:intron 10.0%
!! AAATACAAAATATAATCATG+GGG + Chr4:92269219-92269238 MsG0480024004.01.T01:intron 15.0%
!! ATACTTTACTTAATTATACT+TGG + Chr4:92267576-92267595 MsG0480024004.01.T01:intron 15.0%
!! GAAAACATATAAACATAATT+TGG - Chr4:92268478-92268497 None:intergenic 15.0%
!! TAATTTGGGAAAAAATTATA+TGG - Chr4:92268463-92268482 None:intergenic 15.0%
!!! AGAAAAAAAATCTAAAATCA+TGG - Chr4:92270014-92270033 None:intergenic 15.0%
!!! ATTAAAATTAGAAGTATAAG+TGG - Chr4:92267219-92267238 None:intergenic 15.0%
!!! GATTGATTTTTAGTTATATT+TGG - Chr4:92268914-92268933 None:intergenic 15.0%
!!! GTGTTTTAAAAATGATTTAT+TGG + Chr4:92268690-92268709 MsG0480024004.01.T01:intron 15.0%
!!! TTGATTTTTAGTTATATTTG+GGG - Chr4:92268912-92268931 None:intergenic 15.0%
!!! TTTTACAATTTAAAAAAACG+AGG + Chr4:92268532-92268551 MsG0480024004.01.T01:intron 15.0%
!! AAAAATAAAGTATAAGTGGA+TGG - Chr4:92267352-92267371 None:intergenic 20.0%
!! AAACAAGTAATTAACATATC+AGG - Chr4:92268077-92268096 None:intergenic 20.0%
!! AAATAATATAATTTGGGCTT+TGG - Chr4:92269645-92269664 None:intergenic 20.0%
!! AACCAATTTCTGATAAAATT+AGG + Chr4:92266949-92266968 MsG0480024004.01.T01:intron 20.0%
!! AATACAAAATATAATCATGG+GGG + Chr4:92269220-92269239 MsG0480024004.01.T01:intron 20.0%
!! ATAGAAAAGTTTATCATTTG+TGG - Chr4:92268960-92268979 None:intergenic 20.0%
!! CAAAAGGAAATTATTACAAA+TGG - Chr4:92270054-92270073 None:intergenic 20.0%
!! CTTAAAAGTTAAAACTATCA+AGG - Chr4:92268663-92268682 None:intergenic 20.0%
!! GAAAATGTAAGTGTAAATAA+TGG - Chr4:92269318-92269337 None:intergenic 20.0%
!! TAAATTTGAGTATATTATGG+AGG + Chr4:92269176-92269195 MsG0480024004.01.T01:intron 20.0%
!!! ATATCAACTTTTTATAAGAC+TGG - Chr4:92269903-92269922 None:intergenic 20.0%
!!! ATCCTAATTTTATCAGAAAT+TGG - Chr4:92266954-92266973 None:intergenic 20.0%
!!! ATTATATATTATTGGCTAGT+TGG + Chr4:92268397-92268416 MsG0480024004.01.T01:intron 20.0%
!!! GTTTTAACTTTTAAGCATTT+AGG + Chr4:92268668-92268687 MsG0480024004.01.T01:intron 20.0%
!!! GTTTTTTCTTTAACATTCAA+AGG + Chr4:92268093-92268112 MsG0480024004.01.T01:intron 20.0%
!!! TAAAAGTGATTAGTGTTTTT+TGG - Chr4:92269779-92269798 None:intergenic 20.0%
!!! TAATATCTTGTTATGTGTTA+TGG + Chr4:92267727-92267746 MsG0480024004.01.T01:intron 20.0%
!!! TAATGTTTTTTTTCTTCTTC+AGG + Chr4:92268732-92268751 MsG0480024004.01.T01:intron 20.0%
!!! TCTTTATTATGGAATTCTTT+TGG + Chr4:92268332-92268351 MsG0480024004.01.T01:CDS 20.0%
!!! TCTTTTAATGAGAAAAATCT+AGG - Chr4:92269265-92269284 None:intergenic 20.0%
!!! TGATTTTTAGTTATATTTGG+GGG - Chr4:92268911-92268930 None:intergenic 20.0%
!!! TTCTATCTTTTATATTTCAG+AGG + Chr4:92268285-92268304 MsG0480024004.01.T01:intron 20.0%
! AGAGAAACAATAGTGATAAA+AGG + Chr4:92267935-92267954 MsG0480024004.01.T01:intron 25.0%
! AGAGAATAGACTAACAAAAT+TGG + Chr4:92267970-92267989 MsG0480024004.01.T01:intron 25.0%
! GAATTATCTCGCTTAAAATA+AGG - Chr4:92270124-92270143 None:intergenic 25.0%
! TAGTGTGACTTCAAAAAATT+AGG + Chr4:92268049-92268068 MsG0480024004.01.T01:intron 25.0%
! TTATGTAAATGACACATTCA+AGG - Chr4:92269531-92269550 None:intergenic 25.0%
! TTGAATCTTGTGTTTAGTAT+AGG + Chr4:92268870-92268889 MsG0480024004.01.T01:intron 25.0%
! TTTAAGAGTTAGATTACCTA+TGG - Chr4:92267119-92267138 None:intergenic 25.0%
!! AAATTAGAAGTATAAGTGGA+TGG - Chr4:92267215-92267234 None:intergenic 25.0%
!! AATTTCCTTTTGTTGATACT+TGG + Chr4:92270062-92270081 MsG0480024004.01.T01:intron 25.0%
!! TATTATTGCAGTACTTTTAC+AGG + Chr4:92268355-92268374 MsG0480024004.01.T01:CDS 25.0%
!!! ACATAAGAAAAAAGTGTTAG+AGG - Chr4:92269021-92269040 None:intergenic 25.0%
!!! GAGTTACAATATAACTTGTT+AGG + Chr4:92269934-92269953 MsG0480024004.01.T01:intron 25.0%
!!! TTGTCTTTTGTTTTAAGGAA+GGG - Chr4:92269374-92269393 None:intergenic 25.0%
AAAGTATAAGAACACCCATT+TGG - Chr4:92267563-92267582 None:intergenic 30.0%
AACCTTAAATACTCAAACTG+TGG - Chr4:92269401-92269420 None:intergenic 30.0%
AAGTATAAGAACACCCATTT+GGG - Chr4:92267562-92267581 None:intergenic 30.0%
ACAAAGATGTTGTTCTTGAA+TGG + Chr4:92269073-92269092 MsG0480024004.01.T01:intron 30.0%
ACGTGTATCAATTCAAGTAT+AGG - Chr4:92267182-92267201 None:intergenic 30.0%
CAGAACTTGCATCTTTATTA+TGG + Chr4:92268321-92268340 MsG0480024004.01.T01:CDS 30.0%
CATAATAAAGATGCAAGTTC+TGG - Chr4:92268323-92268342 None:intergenic 30.0%
CGTGTATCAATTCAAGTATA+GGG - Chr4:92267181-92267200 None:intergenic 30.0%
CTAGTTAAGAGTCAGATAAT+TGG + Chr4:92269815-92269834 MsG0480024004.01.T01:intron 30.0%
GAAAGAGAGATTACATGAAA+TGG + Chr4:92267864-92267883 MsG0480024004.01.T01:intron 30.0%
GAATACCAAGTATCAACAAA+AGG - Chr4:92270070-92270089 None:intergenic 30.0%
TAATCGAAGATAGATTCGTA+AGG - Chr4:92266678-92266697 None:intergenic 30.0%
TAGGATTATTATCTGACACA+TGG + Chr4:92266968-92266987 MsG0480024004.01.T01:intron 30.0%
TGACAAACATACGTTAAAAC+TGG - Chr4:92267689-92267708 None:intergenic 30.0%
TGTTAGCCATTCTAAATAGT+GGG + Chr4:92266812-92266831 MsG0480024004.01.T01:intron 30.0%
TTAACACCAAAGAAGTCATT+GGG + Chr4:92270095-92270114 MsG0480024004.01.T01:CDS 30.0%
TTACCTATGGATTTAGTGAA+AGG - Chr4:92267106-92267125 None:intergenic 30.0%
TTCATGTAATACCTTCACTA+AGG - Chr4:92269447-92269466 None:intergenic 30.0%
TTCTATCCCACTATTTAGAA+TGG - Chr4:92266821-92266840 None:intergenic 30.0%
TTGTTAGCCATTCTAAATAG+TGG + Chr4:92266811-92266830 MsG0480024004.01.T01:intron 30.0%
! TATGTTTTCACTATAGTGTG+TGG + Chr4:92269036-92269055 MsG0480024004.01.T01:intron 30.0%
! TATTTAAGGTTTGCAAGTCT+TGG + Chr4:92269410-92269429 MsG0480024004.01.T01:intron 30.0%
!! GAGTTTGATACTTAAGTTGA+TGG + Chr4:92267903-92267922 MsG0480024004.01.T01:intron 30.0%
!! TGTGTTATTCTTAGTTTTCG+TGG - Chr4:92269603-92269622 None:intergenic 30.0%
!!! CTTGTCTTTTGTTTTAAGGA+AGG - Chr4:92269375-92269394 None:intergenic 30.0%
!!! GTGACTTGTCTTTTGTTTTA+AGG - Chr4:92269379-92269398 None:intergenic 30.0%
!!! TTGTAGTTTTATCATGCTCT+TGG + Chr4:92269843-92269862 MsG0480024004.01.T01:intron 30.0%
AAAAACGAGGCATGATTATG+AGG + Chr4:92268545-92268564 MsG0480024004.01.T01:intron 35.0%
AAAACGAGGCATGATTATGA+GGG + Chr4:92268546-92268565 MsG0480024004.01.T01:intron 35.0%
AACCAATCTAAGTTGTTGGA+TGG + Chr4:92268012-92268031 MsG0480024004.01.T01:intron 35.0%
ACTTTCAAGAGGACACAAAT+AGG - Chr4:92267037-92267056 None:intergenic 35.0%
AGGAAGGGATACAAATACAA+AGG - Chr4:92269359-92269378 None:intergenic 35.0%
AGTATAAGAACACCCATTTG+GGG - Chr4:92267561-92267580 None:intergenic 35.0%
AGTCAACCAATCTAAGTTGT+TGG + Chr4:92268008-92268027 MsG0480024004.01.T01:intron 35.0%
ATGCCTTTCACTAAATCCAT+AGG + Chr4:92267100-92267119 MsG0480024004.01.T01:intron 35.0%
CACCACAGTTTGAGTATTTA+AGG + Chr4:92269396-92269415 MsG0480024004.01.T01:intron 35.0%
CTTTCAAGAGGACACAAATA+GGG - Chr4:92267036-92267055 None:intergenic 35.0%
GATTGCTGAGTTCAATAACA+AGG - Chr4:92266615-92266634 None:intergenic 35.0%
GTTAACACCAAAGAAGTCAT+TGG + Chr4:92270094-92270113 MsG0480024004.01.T01:CDS 35.0%
TGTTGATACTTGGTATTCAC+AGG + Chr4:92270072-92270091 MsG0480024004.01.T01:intron 35.0%
TTCCATCCAACAACTTAGAT+TGG - Chr4:92268017-92268036 None:intergenic 35.0%
! AGAGGAGCACATTTAGTTTA+GGG - Chr4:92267154-92267173 None:intergenic 35.0%
! ATCGTGGTTTTTGTGGAATT+AGG + Chr4:92269708-92269727 MsG0480024004.01.T01:intron 35.0%
! CTCTGAGAGGTATAAAAATG+AGG + Chr4:92267838-92267857 MsG0480024004.01.T01:intron 35.0%
! TTTTCGTGGAATCATTTTCG+TGG - Chr4:92269589-92269608 None:intergenic 35.0%
AAACATTACTTAGCGCGTTC+AGG - Chr4:92268720-92268739 None:intergenic 40.0%
AACATTACTTAGCGCGTTCA+GGG - Chr4:92268719-92268738 None:intergenic 40.0%
AGATAGATTCGTAAGGACCT+TGG - Chr4:92266671-92266690 None:intergenic 40.0%
AGGTAACCCAATGACTTCTT+TGG - Chr4:92270104-92270123 None:intergenic 40.0%
CATCGGTAGAAACTTTCAAG+AGG - Chr4:92267048-92267067 None:intergenic 40.0%
GATTGTGCTAGAGTAAGAGT+CGG - Chr4:92268790-92268809 None:intergenic 40.0%
TAACGTTCTTGCACTACTTC+AGG + Chr4:92268822-92268841 MsG0480024004.01.T01:CDS 40.0%
TCCATTGTGCTTAAGCAACA+TGG + Chr4:92270142-92270161 MsG0480024004.01.T01:CDS 40.0%
TGCTTAAGCAACATGGAGAT+TGG + Chr4:92270149-92270168 MsG0480024004.01.T01:CDS 40.0%
TTATCTGACACATGGATCAC+AGG + Chr4:92266976-92266995 MsG0480024004.01.T01:intron 40.0%
TTCTTCATTGTGAGCGAATG+AGG - Chr4:92266514-92266533 None:intergenic 40.0%
TTTGCAAGTCTTGGAGTCAT+TGG + Chr4:92269419-92269438 MsG0480024004.01.T01:intron 40.0%
! ATTACCTCTGGTGCCAATTT+CGG - Chr4:92267480-92267499 None:intergenic 40.0%
! CTTTGCTATGGCTTAGAACA+GGG - Chr4:92267438-92267457 None:intergenic 40.0%
! GAGAGGAGCACATTTAGTTT+AGG - Chr4:92267155-92267174 None:intergenic 40.0%
! TCCATGTTGCTTAAGCACAA+TGG - Chr4:92270146-92270165 None:intergenic 40.0%
! TTTTGTGGAATTAGGCTTCG+TGG + Chr4:92269716-92269735 MsG0480024004.01.T01:intron 40.0%
!! GATTGAGTAGAAGTACCAAG+AGG - Chr4:92266556-92266575 None:intergenic 40.0%
AAAACTCGGTATCCGATCCA+AGG + Chr4:92267376-92267395 MsG0480024004.01.T01:intron 45.0%
AAGATCCCAAACCAACCACT+AGG + Chr4:92267531-92267550 MsG0480024004.01.T01:intron 45.0%
AATTAGGCTTCGTGGCATCT+AGG + Chr4:92269724-92269743 MsG0480024004.01.T01:intron 45.0%
AGCCATAGCAAAGCTCTGTA+TGG + Chr4:92267445-92267464 MsG0480024004.01.T01:intron 45.0%
ATTCAAGTATAGGGCGAGAG+AGG - Chr4:92267172-92267191 None:intergenic 45.0%
CACGATGAGACACAATGCAA+CGG - Chr4:92269694-92269713 None:intergenic 45.0%
CTTTGGCAGCAATCATGGTA+GGG - Chr4:92269628-92269647 None:intergenic 45.0%
GATTTGCCAACGTCACAACA+TGG - Chr4:92266854-92266873 None:intergenic 45.0%
GTCCATACAGAGCTTTGCTA+TGG - Chr4:92267450-92267469 None:intergenic 45.0%
TCACACTTCATGACTCTGAG+AGG + Chr4:92267825-92267844 MsG0480024004.01.T01:intron 45.0%
TGTGATCCATGTTGTGACGT+TGG + Chr4:92266845-92266864 MsG0480024004.01.T01:intron 45.0%
TGTTGTGACGTTGGCAAATC+AGG + Chr4:92266854-92266873 MsG0480024004.01.T01:intron 45.0%
TTCCATGCAAGCCATCGTTT+GGG - Chr4:92266590-92266609 None:intergenic 45.0%
! GCTTTGCTATGGCTTAGAAC+AGG - Chr4:92267439-92267458 None:intergenic 45.0%
! GTGTCTCATCGTGGTTTTTG+TGG + Chr4:92269701-92269720 MsG0480024004.01.T01:intron 45.0%
!! AGAGCGTTTTCTCGAAGATC+AGG - Chr4:92266637-92266656 None:intergenic 45.0%
!! GTTGACCTAGTGGTTGGTTT+GGG - Chr4:92267539-92267558 None:intergenic 45.0%
!! TAGTGGTTGGTTTGGGATCT+TGG - Chr4:92267532-92267551 None:intergenic 45.0%
AAGAACCACTGCCCAAACGA+TGG + Chr4:92266576-92266595 MsG0480024004.01.T01:CDS 50.0%
ACCACTAGGTCAACCCCAAA+TGG + Chr4:92267545-92267564 MsG0480024004.01.T01:intron 50.0%
AGTCATTGGCGCCTTAGTGA+AGG + Chr4:92269433-92269452 MsG0480024004.01.T01:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG + Chr4:92267498-92267517 MsG0480024004.01.T01:intron 50.0%
ATGGACTTGCCCACCGAAAT+TGG + Chr4:92267464-92267483 MsG0480024004.01.T01:intron 50.0%
CCACTAGGTCAACCCCAAAT+GGG + Chr4:92267546-92267565 MsG0480024004.01.T01:intron 50.0%
CGTTGCATTGTGTCTCATCG+TGG + Chr4:92269692-92269711 MsG0480024004.01.T01:intron 50.0%
GCTTTGGCAGCAATCATGGT+AGG - Chr4:92269629-92269648 None:intergenic 50.0%
GTCTCAGGTTCGATTACCTC+TGG - Chr4:92267492-92267511 None:intergenic 50.0%
GTTCCATGCAAGCCATCGTT+TGG - Chr4:92266591-92266610 None:intergenic 50.0%
TCTTCGTCTGTAGCTCCTCT+TGG + Chr4:92266538-92266557 MsG0480024004.01.T01:CDS 50.0%
TGTGCTAGAGTAAGAGTCGG+TGG - Chr4:92268787-92268806 None:intergenic 50.0%
! GGTTGACCTAGTGGTTGGTT+TGG - Chr4:92267540-92267559 None:intergenic 50.0%
! TTGGGCTTTGGCAGCAATCA+TGG - Chr4:92269633-92269652 None:intergenic 50.0%
! TTTGGGGTTGACCTAGTGGT+TGG - Chr4:92267545-92267564 None:intergenic 50.0%
AATCCCACTGCTCACTTGCG+GGG + Chr4:92267410-92267429 MsG0480024004.01.T01:intron 55.0%
CAATCCCACTGCTCACTTGC+GGG + Chr4:92267409-92267428 MsG0480024004.01.T01:intron 55.0%
CCAATCCCACTGCTCACTTG+CGG + Chr4:92267408-92267427 MsG0480024004.01.T01:intron 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - Chr4:92267514-92267533 None:intergenic 55.0%
TGGTCAGTCGGTCCTTGGAT+CGG - Chr4:92267391-92267410 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - Chr4:92267507-92267526 None:intergenic 55.0%
! ACCTCTGGTGCCAATTTCGG+TGG - Chr4:92267477-92267496 None:intergenic 55.0%
! CCCATTTGGGGTTGACCTAG+TGG - Chr4:92267549-92267568 None:intergenic 55.0%
! CCTCTGGTGCCAATTTCGGT+GGG - Chr4:92267476-92267495 None:intergenic 55.0%
! TGCCCAAACGATGGCTTGCA+TGG + Chr4:92266585-92266604 MsG0480024004.01.T01:CDS 55.0%
!! GAGCAGTGGGATTGGTCAGT+CGG - Chr4:92267403-92267422 None:intergenic 55.0%
ATCCCACTGCTCACTTGCGG+GGG + Chr4:92267411-92267430 MsG0480024004.01.T01:intron 60.0%
CCCACCGAAATTGGCACCAG+AGG + Chr4:92267473-92267492 MsG0480024004.01.T01:intron 60.0%
CCGCAAGTGAGCAGTGGGAT+TGG - Chr4:92267411-92267430 None:intergenic 60.0%
CGCTCTTCGTGTGCTCTCCA+AGG + Chr4:92266651-92266670 MsG0480024004.01.T01:CDS 60.0%
GCAAGCCATCGTTTGGGCAG+TGG - Chr4:92266584-92266603 None:intergenic 60.0%
!! GGGATTGGTCAGTCGGTCCT+TGG - Chr4:92267396-92267415 None:intergenic 60.0%
TCCCACTGCTCACTTGCGGG+GGG + Chr4:92267412-92267431 MsG0480024004.01.T01:intron 65.0%
GCCCCCCGCAAGTGAGCAGT+GGG - Chr4:92267416-92267435 None:intergenic 70.0%
GGCCCCCCGCAAGTGAGCAG+TGG - Chr4:92267417-92267436 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 92266496 92270177 92266496 ID=MsG0480024004.01;Name=MsG0480024004.01
Chr4 mRNA 92266496 92270177 92266496 ID=MsG0480024004.01.T01;Parent=MsG0480024004.01;Name=MsG0480024004.01.T01;_AED=0.47;_eAED=0.55;_QI=0|0|0|1|1|1|4|0|140
Chr4 exon 92266496 92266672 92266496 ID=MsG0480024004.01.T01:exon:34042;Parent=MsG0480024004.01.T01
Chr4 exon 92268305 92268376 92268305 ID=MsG0480024004.01.T01:exon:34043;Parent=MsG0480024004.01.T01
Chr4 exon 92268754 92268843 92268754 ID=MsG0480024004.01.T01:exon:34044;Parent=MsG0480024004.01.T01
Chr4 exon 92270094 92270177 92270094 ID=MsG0480024004.01.T01:exon:34045;Parent=MsG0480024004.01.T01
Chr4 CDS 92266496 92266672 92266496 ID=MsG0480024004.01.T01:cds;Parent=MsG0480024004.01.T01
Chr4 CDS 92268305 92268376 92268305 ID=MsG0480024004.01.T01:cds;Parent=MsG0480024004.01.T01
Chr4 CDS 92268754 92268843 92268754 ID=MsG0480024004.01.T01:cds;Parent=MsG0480024004.01.T01
Chr4 CDS 92270094 92270177 92270094 ID=MsG0480024004.01.T01:cds;Parent=MsG0480024004.01.T01
Gene Sequence

>MsG0480024004.01.T01

ATGGACAAAATTTCTCCTCATTCGCTCACAATGAAGAATGAATCTTCGTCTGTAGCTCCTCTTGGTACTTCTACTCAATCAAGAACCACTGCCCAAACGATGGCTTGCATGGAACGCCTTGTTATTGAACTCAGCAATCCTGATCTTCGAGAAAACGCTCTTCGTGTGCTCTCCAAGAGGTATGAGTTATCTCCAGAACTTGCATCTTTATTATGGAATTCTTTTGGTATTATTGCAGTACTTTTACAGGAAATAACTTCAATATATTGTACTCTTTCACCACCGACTCTTACTCTAGCACAATCAACTCGAGTGTGTAACGTTCTTGCACTACTTCAGGTTAACACCAAAGAAGTCATTGGGTTACCTTATTTTAAGCGAGATAATTCCATTGTGCTTAAGCAACATGGAGATTGGAAATGA
Protein sequence

>MsG0480024004.01.T01

MDKISPHSLTMKNESSSVAPLGTSTQSRTTAQTMACMERLVIELSNPDLRENALRVLSKRYELSPELASLLWNSFGIIAVLLQEITSIYCTLSPPTLTLAQSTRVCNVLALLQVNTKEVIGLPYFKRDNSIVLKQHGDWK*