AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024061.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024061.01.T01 MTR_3g072200 78.395 162 32 1 23 184 21 179 6.38e-81 254
MsG0580024061.01.T01 MTR_4g051638 81.879 149 19 1 27 167 92 240 1.09e-80 244
MsG0580024061.01.T01 MTR_7g050385 80.272 147 21 1 27 165 83 229 3.91e-78 238
MsG0580024061.01.T01 MTR_3g015530 72.185 151 34 1 42 184 33 183 6.69e-75 229
MsG0580024061.01.T01 MTR_1g081740 63.043 184 26 3 9 184 17 166 4.71e-69 213
MsG0580024061.01.T01 MTR_2g026585 63.043 184 26 3 9 184 18 167 9.75e-68 216
MsG0580024061.01.T01 MTR_3g437000 82.258 124 14 1 24 139 7 130 4.57e-67 206
MsG0580024061.01.T01 MTR_1g059880 73.077 130 21 1 24 153 59 174 2.09e-59 189
MsG0580024061.01.T01 MTR_3g014480 78.704 108 23 0 184 291 236 343 1.74e-55 183
MsG0580024061.01.T01 MTR_1g101180 75.676 111 27 0 186 296 204 314 4.55e-55 181
MsG0580024061.01.T01 MTR_7g069450 75.926 108 26 0 184 291 452 559 5.78e-54 184
MsG0580024061.01.T01 MTR_2g067930 64.780 159 29 1 26 184 31 162 3.26e-53 172
MsG0580024061.01.T01 MTR_4g049670 68.148 135 20 2 24 158 17 128 9.27e-52 166
MsG0580024061.01.T01 MTR_3g032550 78.095 105 23 0 184 288 312 416 8.86e-51 173
MsG0580024061.01.T01 MTR_5g031650 51.381 181 74 4 8 184 45 215 6.18e-50 165
MsG0580024061.01.T01 MTR_5g060540 56.364 165 39 3 28 184 12 151 3.23e-49 168
MsG0580024061.01.T01 MTR_4g119600 54.717 159 67 2 30 184 36 193 3.03e-48 164
MsG0580024061.01.T01 MTR_6g075990 54.430 158 67 2 31 184 55 211 1.15e-47 160
MsG0580024061.01.T01 MTR_3g030230 82.609 92 16 0 93 184 69 160 1.60e-47 157
MsG0580024061.01.T01 MTR_8g009330 52.229 157 63 4 29 175 51 205 2.58e-44 150
MsG0580024061.01.T01 MTR_2g451070 74.000 100 18 1 24 115 23 122 6.25e-44 146
MsG0580024061.01.T01 MTR_8g040220 60.177 113 44 1 184 296 106 217 2.58e-43 148
MsG0580024061.01.T01 MTR_4g057975 54.015 137 61 2 49 184 52 187 1.80e-42 145
MsG0580024061.01.T01 MTR_8g107490 55.385 130 57 1 55 184 44 172 2.87e-42 147
MsG0580024061.01.T01 MTR_3g462670 50.641 156 43 1 28 183 27 148 1.21e-41 144
MsG0580024061.01.T01 MTR_4g057300 73.034 89 24 0 95 183 1 89 1.70e-41 147
MsG0580024061.01.T01 MTR_4g088830 79.268 82 17 0 210 291 20 101 1.71e-41 139
MsG0580024061.01.T01 MTR_5g071980 66.667 114 23 4 24 124 23 134 4.07e-39 139
MsG0580024061.01.T01 MTR_6g089230 79.012 81 17 0 100 180 28 108 2.55e-38 135
MsG0580024061.01.T01 MTR_6g089230 73.469 49 13 0 184 232 178 226 1.68e-18 82.8
MsG0580024061.01.T01 MTR_3g077875 45.223 157 77 3 30 184 64 213 1.66e-37 135
MsG0580024061.01.T01 MTR_0325s0020 74.074 81 21 0 179 259 127 207 5.10e-37 138
MsG0580024061.01.T01 MTR_3g087440 44.565 184 88 5 4 184 41 213 3.74e-36 130
MsG0580024061.01.T01 MTR_7g106560 52.353 170 31 6 25 184 20 149 8.46e-36 127
MsG0580024061.01.T01 MTR_3g034840 43.396 159 81 3 28 184 52 203 8.90e-36 128
MsG0580024061.01.T01 MTR_0599s0020 43.396 159 81 3 28 184 52 203 8.90e-36 128
MsG0580024061.01.T01 MTR_1g058140 43.646 181 53 4 6 184 30 163 1.36e-35 128
MsG0580024061.01.T01 MTR_3g067290 58.772 114 46 1 71 184 83 195 6.65e-35 126
MsG0580024061.01.T01 MTR_6g464570 45.714 140 69 4 49 183 13 150 1.62e-34 123
MsG0580024061.01.T01 MTR_2g067910 66.667 99 32 1 198 296 1 98 1.18e-33 120
MsG0580024061.01.T01 MTR_6g090600 56.311 103 44 1 68 170 1 102 4.65e-33 117
MsG0580024061.01.T01 MTR_8g038805 62.651 83 31 0 93 175 50 132 5.77e-33 118
MsG0580024061.01.T01 MTR_5g060510 51.948 154 41 3 22 166 36 165 1.89e-31 115
MsG0580024061.01.T01 MTR_6g084740 76.316 76 10 1 24 91 23 98 2.10e-31 115
MsG0580024061.01.T01 MTR_1g051465 44.311 167 75 5 144 294 180 344 2.15e-31 120
MsG0580024061.01.T01 MTR_8g465250 80.952 63 12 0 197 259 1 63 3.40e-31 113
MsG0580024061.01.T01 MTR_2g101530 56.701 97 41 1 198 294 1 96 9.48e-31 113
MsG0580024061.01.T01 MTR_7g006230 42.353 170 74 6 144 294 321 485 3.39e-30 119
MsG0580024061.01.T01 MTR_4g065057 38.000 200 100 7 116 294 105 301 4.66e-30 115
MsG0580024061.01.T01 MTR_8g445570 75.385 65 16 0 120 184 8 72 5.85e-30 109
MsG0580024061.01.T01 MTR_1g035110 48.718 117 58 2 179 294 278 393 6.22e-30 117
MsG0580024061.01.T01 MTR_5g018790 49.573 117 57 2 179 294 588 703 7.53e-30 119
MsG0580024061.01.T01 MTR_7g029645 43.357 143 69 4 159 294 347 484 2.95e-29 116
MsG0580024061.01.T01 MTR_2g067680 47.863 117 59 2 179 294 158 273 3.66e-29 112
MsG0580024061.01.T01 MTR_4g113170 70.000 70 21 0 184 253 604 673 5.31e-29 116
MsG0580024061.01.T01 MTR_4g113170 83.051 59 10 0 126 184 72 130 2.62e-25 106
MsG0580024061.01.T01 MTR_6g026910 54.701 117 16 2 24 140 23 102 1.01e-28 110
MsG0580024061.01.T01 MTR_5g062340 43.357 143 69 4 159 294 281 418 1.64e-28 114
MsG0580024061.01.T01 MTR_5g006100 43.791 153 79 4 34 184 42 189 1.67e-28 115
MsG0580024061.01.T01 MTR_8g020437 46.154 117 61 2 179 294 123 238 2.53e-28 109
MsG0580024061.01.T01 MTR_8g103800 39.752 161 63 3 32 182 25 161 4.98e-28 110
MsG0580024061.01.T01 MTR_1g016820 41.958 143 71 4 159 294 216 353 1.34e-27 110
MsG0580024061.01.T01 MTR_8g463980 41.722 151 81 4 144 294 344 487 3.35e-27 110
MsG0580024061.01.T01 MTR_8g463980 50.538 93 45 1 198 290 1 92 2.96e-25 105
MsG0580024061.01.T01 MTR_1g098990 38.674 181 66 4 8 184 23 162 1.83e-26 105
MsG0580024061.01.T01 MTR_6g029530 40.141 142 77 2 50 184 498 638 2.04e-26 109
MsG0580024061.01.T01 MTR_0116s0050 38.323 167 66 3 23 184 6 140 1.10e-25 100
MsG0580024061.01.T01 MTR_1g012760 36.620 142 86 2 43 184 28 165 2.37e-25 102
MsG0580024061.01.T01 MTR_1g012760 36.620 142 86 2 43 184 39 176 2.68e-25 102
MsG0580024061.01.T01 MTR_3g437080 82.692 52 9 0 184 235 121 172 3.52e-25 99.4
MsG0580024061.01.T01 MTR_5g079560 41.781 146 73 4 30 170 60 198 6.81e-25 100
MsG0580024061.01.T01 MTR_1g024975 46.392 97 51 1 198 294 1 96 8.04e-25 96.3
MsG0580024061.01.T01 MTR_2g073060 53.535 99 37 2 27 117 70 167 8.58e-25 98.2
MsG0580024061.01.T01 MTR_2g096070 41.259 143 72 4 159 294 668 805 2.10e-24 103
MsG0580024061.01.T01 MTR_2g096070 43.846 130 42 2 55 184 83 181 2.26e-23 100
MsG0580024061.01.T01 MTR_3g116710 34.783 138 86 2 50 184 78 214 5.48e-24 98.2
MsG0580024061.01.T01 MTR_2g461120 42.857 119 64 3 159 276 94 209 7.42e-24 97.1
MsG0580024061.01.T01 MTR_4g132765 49.515 103 47 2 184 286 911 1008 1.41e-23 101
MsG0580024061.01.T01 MTR_8g468040 43.333 150 72 7 154 297 407 549 3.41e-23 99.8
MsG0580024061.01.T01 MTR_7g060350 36.842 171 81 5 23 189 33 180 4.86e-23 94.0
MsG0580024061.01.T01 MTR_8g409330 39.286 168 72 6 144 295 61 214 5.27e-23 95.1
MsG0580024061.01.T01 MTR_6g037570 44.512 164 65 5 5 143 9 171 9.57e-23 95.1
MsG0580024061.01.T01 MTR_2g061890 45.614 114 57 2 184 296 262 371 1.04e-22 97.1
MsG0580024061.01.T01 MTR_6g035400 47.273 110 53 2 184 293 332 436 1.07e-22 97.8
MsG0580024061.01.T01 MTR_7g024793 71.930 57 16 0 184 240 168 224 1.29e-22 94.0
MsG0580024061.01.T01 MTR_6g084230 46.491 114 56 2 184 297 118 226 1.64e-22 95.5
MsG0580024061.01.T01 MTR_1g064700 48.544 103 48 2 184 286 81 178 2.16e-22 92.4
MsG0580024061.01.T01 MTR_8g017510 47.573 103 49 2 184 286 118 215 2.23e-22 93.2
MsG0580024061.01.T01 MTR_5g070810 46.226 106 52 3 69 172 10 112 2.49e-22 90.1
MsG0580024061.01.T01 MTR_7g057800 56.322 87 29 2 30 108 40 125 2.67e-22 94.0
MsG0580024061.01.T01 MTR_7g057800 43.220 118 53 3 8 117 144 255 2.08e-19 85.9
MsG0580024061.01.T01 MTR_7g050365 59.524 84 10 1 101 184 20 79 2.91e-22 92.4
MsG0580024061.01.T01 MTR_8g446690 48.315 89 43 2 184 272 120 205 1.19e-21 92.4
MsG0580024061.01.T01 MTR_7g056013 46.602 103 50 2 184 286 386 483 1.46e-21 94.7
MsG0580024061.01.T01 MTR_5g046160 36.923 130 65 3 51 180 42 154 3.09e-21 90.9
MsG0580024061.01.T01 MTR_8g020433 57.333 75 32 0 110 184 70 144 4.78e-21 93.2
MsG0580024061.01.T01 MTR_8g463940 52.212 113 42 5 28 129 57 168 8.44e-21 87.8
MsG0580024061.01.T01 MTR_7g004990 46.602 103 50 2 184 286 30 127 1.38e-20 86.3
MsG0580024061.01.T01 MTR_2g090505 33.088 136 87 2 50 182 83 217 1.76e-20 90.1
MsG0580024061.01.T01 MTR_1g099140 33.333 132 84 2 56 184 89 219 2.50e-20 91.3
MsG0580024061.01.T01 MTR_0219s0080 50.000 108 41 4 23 121 22 125 3.57e-20 84.7
MsG0580024061.01.T01 MTR_4g019660 53.333 75 34 1 212 286 52 125 4.35e-20 84.3
MsG0580024061.01.T01 MTR_8g467980 37.391 115 66 2 16 125 31 144 5.29e-20 84.7
MsG0580024061.01.T01 MTR_7g064870 41.346 104 57 2 63 164 56 157 9.83e-20 85.1
MsG0580024061.01.T01 MTR_5g046145 34.266 143 86 3 56 198 125 259 6.22e-19 86.3
MsG0580024061.01.T01 MTR_0156s0040 48.913 92 45 1 95 184 1 92 6.81e-19 82.8
MsG0580024061.01.T01 MTR_4g124655 46.250 80 42 1 215 294 64 142 1.06e-18 81.6
MsG0580024061.01.T01 MTR_3g045850 50.633 79 37 2 49 127 71 147 1.30e-18 81.3
MsG0580024061.01.T01 MTR_1g080040 47.253 91 46 1 96 184 1 91 2.19e-18 80.5
MsG0580024061.01.T01 MTR_1g075420 46.939 98 44 3 30 127 25 114 2.98e-18 79.7
MsG0580024061.01.T01 MTR_0341s0040 43.089 123 58 3 16 127 15 136 4.02e-18 79.3
MsG0580024061.01.T01 MTR_0340s0010 47.273 110 46 3 28 126 69 177 4.16e-18 80.5
MsG0580024061.01.T01 MTR_5g046245 64.407 59 21 0 126 184 5 63 7.35e-18 81.3
MsG0580024061.01.T01 MTR_5g046245 64.286 56 20 0 129 184 152 207 4.14e-17 79.0
MsG0580024061.01.T01 MTR_2g067720 51.087 92 40 2 25 112 26 116 8.72e-18 78.6
MsG0580024061.01.T01 MTR_1g088955 45.098 102 25 2 72 173 36 106 9.38e-18 78.6
MsG0580024061.01.T01 MTR_7g010970 46.591 88 44 2 95 180 1 87 2.98e-17 79.3
MsG0580024061.01.T01 MTR_2g461140 37.324 142 50 6 57 188 48 160 4.99e-17 77.8
MsG0580024061.01.T01 MTR_3g110070 46.226 106 45 3 16 110 15 119 5.87e-17 76.3
MsG0580024061.01.T01 MTR_2g026605 48.421 95 41 3 31 121 37 127 1.34e-16 75.5
MsG0580024061.01.T01 MTR_6g019000 47.917 96 38 3 28 112 27 121 3.28e-16 73.9
MsG0580024061.01.T01 MTR_2g030885 42.149 121 59 4 28 138 27 146 8.09e-16 77.8
MsG0580024061.01.T01 MTR_5g071805 36.486 148 56 4 144 291 1 110 9.40e-16 72.4
MsG0580024061.01.T01 MTR_7g034570 41.111 90 45 1 91 180 71 152 2.01e-15 73.6
MsG0580024061.01.T01 MTR_4g051612 49.474 95 37 4 28 112 43 136 2.63e-15 73.6
MsG0580024061.01.T01 MTR_5g015710 45.714 105 48 3 30 132 62 159 3.50e-15 73.2
MsG0580024061.01.T01 MTR_4g033145 44.156 77 42 1 218 294 4 79 4.70e-15 69.7
MsG0580024061.01.T01 MTR_4g048540 55.172 58 25 1 179 235 360 417 6.52e-15 74.7
MsG0580024061.01.T01 MTR_3g005107 46.377 69 36 1 218 286 29 96 1.22e-14 69.3
MsG0580024061.01.T01 MTR_1g075860 42.500 120 56 4 9 122 10 122 2.30e-14 68.9
MsG0580024061.01.T01 MTR_0794s0010 42.857 77 43 1 218 294 4 79 2.41e-14 67.8
MsG0580024061.01.T01 MTR_8g095070 36.527 167 64 7 28 184 27 161 7.44e-14 70.5
MsG0580024061.01.T01 MTR_1g052890 58.929 56 23 0 129 184 2 57 9.20e-14 70.9
MsG0580024061.01.T01 MTR_6g084295 44.595 74 32 1 184 257 10 74 9.44e-14 66.6
MsG0580024061.01.T01 MTR_5g037560 43.902 82 44 2 157 236 74 155 1.50e-13 68.2
MsG0580024061.01.T01 MTR_6g018990 35.766 137 45 4 28 153 27 131 1.65e-13 67.0
MsG0580024061.01.T01 MTR_0116s0070 42.254 71 40 1 224 294 3 72 2.01e-13 65.1
MsG0580024061.01.T01 MTR_3g467720 41.758 91 47 2 100 184 23 113 2.10e-13 66.6
MsG0580024061.01.T01 MTR_7g065910 41.758 91 42 2 96 184 34 115 3.73e-13 69.3
MsG0580024061.01.T01 MTR_5g098640 42.424 99 50 3 8 106 23 114 4.13e-13 66.6
MsG0580024061.01.T01 MTR_3g434990 47.222 72 37 1 55 126 80 150 1.03e-12 65.1
MsG0580024061.01.T01 MTR_5g413325 44.286 70 38 1 225 294 453 521 1.54e-12 68.2
MsG0580024061.01.T01 MTR_5g055912 60.000 45 18 0 132 176 16 60 2.69e-12 61.2
MsG0580024061.01.T01 MTR_3g087410 41.667 108 46 4 189 296 203 293 8.36e-12 65.1
MsG0580024061.01.T01 MTR_4g066180 48.611 72 32 2 215 286 92 158 1.02e-11 62.8
MsG0580024061.01.T01 MTR_8g059020 42.424 99 45 3 16 103 106 203 2.18e-11 63.2
MsG0580024061.01.T01 MTR_7g024830 84.375 32 5 0 153 184 1 32 2.37e-11 58.9
MsG0580024061.01.T01 MTR_2g046540 41.304 92 53 1 23 114 57 147 3.76e-11 60.8
MsG0580024061.01.T01 MTR_1g057190 43.333 60 34 0 205 264 65 124 6.72e-11 59.7
MsG0580024061.01.T01 MTR_6g081290 36.170 94 48 2 96 184 3 89 8.78e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 85 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAATTGGCCATTCTTAA+TGG 0.211843 5:-356567 MsG0580024061.01.T01:CDS
TCTTCATTTGTTGGCTCCTT+TGG 0.273150 5:+356201 None:intergenic
AGCAAATAGGGCTGGATTTA+CGG 0.276740 5:-356760 MsG0580024061.01.T01:CDS
AGCGGGAGCTTCAACCTTAA+TGG 0.277606 5:+356908 None:intergenic
GGAAGACAATGCTTGGAAAT+TGG 0.294672 5:-356580 MsG0580024061.01.T01:CDS
CACCGAATTTGAAGATGTTC+TGG 0.298709 5:-356139 MsG0580024061.01.T01:CDS
GAAAGAAGGATAAAATGATA+TGG 0.304697 5:+356375 None:intergenic
GGAGTGTCATCAAACATAAT+TGG 0.313316 5:+356174 None:intergenic
AGATAATGTCGATTCCATTA+AGG 0.321813 5:-356922 MsG0580024061.01.T01:CDS
GGGTCCGTCGACAAGCAAAT+AGG 0.324624 5:-356773 MsG0580024061.01.T01:CDS
ATTGGATTGTCTTCATTTGT+TGG 0.324708 5:+356192 None:intergenic
CTTTGACTAGGAGGGGAAAA+TGG 0.333279 5:+359441 None:intergenic
CTGGATTTACGGTTATCATT+AGG 0.337717 5:-356749 MsG0580024061.01.T01:CDS
GTCGTCCTCCGTTAATCTTC+CGG 0.345153 5:+356497 None:intergenic
GCAATATTGTTATAGACATT+TGG 0.350476 5:+359416 None:intergenic
AATTCGGTGTTTGCTTTAAC+CGG 0.360703 5:+356153 None:intergenic
TCCGTGCATGTTGGAGGTAG+TGG 0.363555 5:+356336 None:intergenic
TCATTTGTTGGCTCCTTTGG+TGG 0.378485 5:+356204 None:intergenic
GTTGGCTCCTTTGGTGGAAC+CGG 0.381162 5:+356210 None:intergenic
TTCCAGAACATCTTCAAATT+CGG 0.382690 5:+356137 None:intergenic
TCTTCGGTGAAACCACTTAG+AGG 0.385332 5:-356447 MsG0580024061.01.T01:CDS
ACGGAGACTTCGACCTTAGC+GGG 0.392224 5:+356891 None:intergenic
GCTTGAAGCCTCAACTTTAA+CGG 0.401956 5:+356872 None:intergenic
GTAGCAGGGCACCTTCTTGC+CGG 0.409306 5:-356516 MsG0580024061.01.T01:CDS
TTTATCTTTCCATGTGTCTT+GGG 0.412580 5:+356812 None:intergenic
AAGTGGTTTCACCGAAGAAT+TGG 0.416696 5:+356452 None:intergenic
CCTTCTTGCCGGAAGATTAA+CGG 0.427545 5:-356505 MsG0580024061.01.T01:CDS
ATCCTTCTTTCATTAAAAGA+TGG 0.439243 5:-356363 MsG0580024061.01.T01:CDS
AGGTGCGTGGATATGTCGTT+AGG 0.439715 5:-356602 MsG0580024061.01.T01:CDS
ACATGACTTGACCAATTCTT+CGG 0.449092 5:-356463 MsG0580024061.01.T01:CDS
GCTCAATGTCCATGAGTGTT+TGG 0.460695 5:+356244 None:intergenic
GAGCGAAGAGGCGGCAACAT+GGG 0.461785 5:-356298 MsG0580024061.01.T01:CDS
CTCCACTCCGTGCATGTTGG+AGG 0.462100 5:+356330 None:intergenic
GAGATGGTTCCGTATGTAGC+AGG 0.468399 5:-356531 MsG0580024061.01.T01:CDS
AAGAAATGCTATGTTGGAGT+TGG 0.470876 5:-356712 MsG0580024061.01.T01:CDS
GGTCCGTCGACAAGCAAATA+GGG 0.479832 5:-356772 MsG0580024061.01.T01:CDS
AAAGAAGGATAAAATGATAT+GGG 0.480005 5:+356376 None:intergenic
AACGGAGACTTCGACCTTAG+CGG 0.491092 5:+356890 None:intergenic
ACCACTTAGAGGACGGCCTC+CGG 0.496065 5:-356436 MsG0580024061.01.T01:CDS
AGACATTTGGTGCTTTGACT+AGG 0.498944 5:+359429 None:intergenic
AAAGTGAAGAATGAAACAAT+TGG 0.503254 5:-356651 MsG0580024061.01.T01:CDS
AAAAGCAACATGATTTGCCT+TGG 0.512552 5:-356405 MsG0580024061.01.T01:CDS
GGAGCGAAGAGGCGGCAACA+TGG 0.518772 5:-356299 MsG0580024061.01.T01:CDS
CGTCGACAAGCAAATAGGGC+TGG 0.526515 5:-356768 MsG0580024061.01.T01:CDS
TTTGGTGCTTTGACTAGGAG+GGG 0.529684 5:+359434 None:intergenic
AAAGTGTGGGTGTTTGTTCA+AGG 0.533208 5:-356622 MsG0580024061.01.T01:CDS
CCGTTAATCTTCCGGCAAGA+AGG 0.533693 5:+356505 None:intergenic
GTTGTGAACGCCATTAAGAA+TGG 0.548117 5:+356557 None:intergenic
TCGTTAGGGAAGACAATGCT+TGG 0.556018 5:-356587 MsG0580024061.01.T01:CDS
GGTGCGTGGATATGTCGTTA+GGG 0.556776 5:-356601 MsG0580024061.01.T01:CDS
CGTCAATTCCGATGTGGACA+CGG 0.557951 5:-356850 MsG0580024061.01.T01:CDS
CGAAGTCTCCGTTAAAGTTG+AGG 0.568301 5:-356880 MsG0580024061.01.T01:CDS
TGAAGGAAGAAATGCTATGT+TGG 0.568759 5:-356718 MsG0580024061.01.T01:CDS
AAATCACAGGAGCGAAGAGG+CGG 0.571279 5:-356307 MsG0580024061.01.T01:CDS
CATTGAGCTCAAAGAGAGAC+CGG 0.571658 5:-356229 MsG0580024061.01.T01:CDS
AGAAGGTGCCCTGCTACATA+CGG 0.573260 5:+356522 None:intergenic
CCGTGCATGTTGGAGGTAGT+GGG 0.573700 5:+356337 None:intergenic
TTTCTCCACTCCGTGCATGT+TGG 0.575231 5:+356327 None:intergenic
CAGCCCTATTTGCTTGTCGA+CGG 0.576051 5:+356769 None:intergenic
ATTTGGTGCTTTGACTAGGA+GGG 0.577157 5:+359433 None:intergenic
CGAAGAGGCGGCAACATGGG+AGG 0.577946 5:-356295 MsG0580024061.01.T01:CDS
ACCGGAGGCCGTCCTCTAAG+TGG 0.577974 5:+356435 None:intergenic
AGAGAGACCGGTTCCACCAA+AGG 0.578955 5:-356217 MsG0580024061.01.T01:CDS
TAAGGTTGAAGCTCCCGCTA+AGG 0.581885 5:-356904 MsG0580024061.01.T01:CDS
AATTATGTTTGATGACACTC+CGG 0.590678 5:-356172 MsG0580024061.01.T01:CDS
CTACATACGGAACCATCTCA+TGG 0.590860 5:+356535 None:intergenic
TGTTGGAGTTGGTTTGTGAA+CGG 0.593854 5:-356701 MsG0580024061.01.T01:CDS
CATTTGGTGCTTTGACTAGG+AGG 0.595384 5:+359432 None:intergenic
CCCACTACCTCCAACATGCA+CGG 0.600283 5:-356337 MsG0580024061.01.T01:CDS
GGATCGTTTCCAAACACTCA+TGG 0.600627 5:-356253 MsG0580024061.01.T01:CDS
TGGCGTTCACAACCATGAGA+TGG 0.601420 5:-356547 MsG0580024061.01.T01:CDS
GGGTGTTTGTTCAAGGTGCG+TGG 0.604884 5:-356615 MsG0580024061.01.T01:CDS
ACAATTGGATCAAGAAAGTG+TGG 0.606195 5:-356636 MsG0580024061.01.T01:CDS
CGGTGAAACCACTTAGAGGA+CGG 0.618744 5:-356443 MsG0580024061.01.T01:CDS
AGATGGTTCCGTATGTAGCA+GGG 0.619457 5:-356530 MsG0580024061.01.T01:CDS
TACCTCCAACATGCACGGAG+TGG 0.641980 5:-356332 MsG0580024061.01.T01:CDS
ATCATTAGGAGATCTTGTGA+AGG 0.645829 5:-356735 MsG0580024061.01.T01:CDS
GCACGGAGTGGAGAAATCAC+AGG 0.658221 5:-356320 MsG0580024061.01.T01:CDS
GAGAAATCACAGGAGCGAAG+AGG 0.660156 5:-356310 MsG0580024061.01.T01:CDS
GAAATGAGCCGTGTCCACAT+CGG 0.661366 5:+356842 None:intergenic
AATGATATGGGATTAGACCA+AGG 0.663059 5:+356388 None:intergenic
CAATTGGATCAAGAAAGTGT+GGG 0.689965 5:-356635 MsG0580024061.01.T01:CDS
TTCAAGCGTCAATTCCGATG+TGG 0.715226 5:-356856 MsG0580024061.01.T01:CDS
GAGTTGGTTTGTGAACGGAG+CGG 0.720933 5:-356696 MsG0580024061.01.T01:CDS
TCTTGCCGGAAGATTAACGG+AGG 0.737009 5:-356502 MsG0580024061.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATCTCATAATAAAA+TGG + Chr5:357604-357623 None:intergenic 10.0%
!! ATTGAATTTAATCATATTTA+AGG - Chr5:356594-356613 MsG0580024061.01.T01:CDS 10.0%
!! CAAAAAAAAAGAAAAAAAAA+AGG + Chr5:358475-358494 None:intergenic 10.0%
!! TTATTATCTCATAATAAAAT+GGG + Chr5:357603-357622 None:intergenic 10.0%
!!! ATCATTTTTTAAAATAAGTA+TGG - Chr5:357548-357567 MsG0580024061.01.T01:intron 10.0%
!!! TTATAAAAAAGTATATGTAT+TGG - Chr5:356458-356477 MsG0580024061.01.T01:CDS 10.0%
!!! TTTTTTTTTTTTTGTTTTGA+AGG + Chr5:356525-356544 None:intergenic 10.0%
!! AAAAAATATATCCAAAATGT+TGG - Chr5:356933-356952 MsG0580024061.01.T01:intron 15.0%
!! AAAAATATATCCAAAATGTT+GGG - Chr5:356934-356953 MsG0580024061.01.T01:intron 15.0%
!! ACACATTTCAAATAATTAAA+GGG - Chr5:357167-357186 MsG0580024061.01.T01:intron 15.0%
!! TAAAATTATTGACAATATCA+TGG + Chr5:356384-356403 None:intergenic 15.0%
!! TACACATTTCAAATAATTAA+AGG - Chr5:357166-357185 MsG0580024061.01.T01:intron 15.0%
!!! AATTTAATCATATTTAAGGT+CGG - Chr5:356598-356617 MsG0580024061.01.T01:CDS 15.0%
!!! ATAATTTTTTTGGTGTTTTT+TGG + Chr5:358191-358210 None:intergenic 15.0%
!!! GATTGTTTTCTTTTTATTAT+TGG - Chr5:357024-357043 MsG0580024061.01.T01:intron 15.0%
!!! TAATTTTTTTGGTGTTTTTT+GGG + Chr5:358190-358209 None:intergenic 15.0%
!!! TGAAGATTTTTTTTCTTTAA+CGG + Chr5:357845-357864 None:intergenic 15.0%
!!! TTGACACAAAATAATTTTTT+TGG + Chr5:358201-358220 None:intergenic 15.0%
!!! TTTGGTTTTTTTTTTTACAA+AGG + Chr5:356280-356299 None:intergenic 15.0%
!!! TTTTATTTTTTTGCAATAGA+GGG + Chr5:356409-356428 None:intergenic 15.0%
!!! TTTTTATTTTTTTGCAATAG+AGG + Chr5:356410-356429 None:intergenic 15.0%
!!! TTTTTTTGAAGAAAACATTT+TGG + Chr5:356918-356937 None:intergenic 15.0%
!! AAAGAAGGATAAAATGATAT+GGG + Chr5:359186-359205 None:intergenic 20.0%
!! ATGCATTTAAAAAAAGAGAT+GGG - Chr5:357204-357223 MsG0580024061.01.T01:intron 20.0%
!! CAAAGTTAATTGAAATAGAA+AGG - Chr5:356753-356772 MsG0580024061.01.T01:CDS 20.0%
!! GCAAATCTGTTTATAATAAA+GGG + Chr5:357669-357688 None:intergenic 20.0%
!! TAATATTGTCTCATCTTTAT+TGG - Chr5:356560-356579 MsG0580024061.01.T01:CDS 20.0%
!! TGCAAATCTGTTTATAATAA+AGG + Chr5:357670-357689 None:intergenic 20.0%
!!! AGCTAATTTCCATTATTTTT+CGG + Chr5:357497-357516 None:intergenic 20.0%
!!! ATTTAATCATATTTAAGGTC+GGG - Chr5:356599-356618 MsG0580024061.01.T01:CDS 20.0%
!!! GCTTTATTTTTGTCTAATTT+TGG - Chr5:357517-357536 MsG0580024061.01.T01:intron 20.0%
!!! TATGTCACACATATTTTTTT+TGG + Chr5:357782-357801 None:intergenic 20.0%
!!! TTCTTTTTATTATTGGATAG+AGG - Chr5:357031-357050 MsG0580024061.01.T01:intron 20.0%
!!! TTGTTAGGACATTTTTTTAA+CGG - Chr5:357111-357130 MsG0580024061.01.T01:intron 20.0%
!!! TTTCTGGAATAATTTTTATG+TGG + Chr5:357574-357593 None:intergenic 20.0%
! AAAAAGTTGCTTATTTGACA+AGG + Chr5:358603-358622 None:intergenic 25.0%
! AAAGATAAAAACGAATTGCT+CGG - Chr5:358761-358780 MsG0580024061.01.T01:intron 25.0%
! AAAGTGAAGAATGAAACAAT+TGG - Chr5:358908-358927 MsG0580024061.01.T01:intron 25.0%
! AAATGCATATAGCAATTGAA+GGG + Chr5:356329-356348 None:intergenic 25.0%
! AACTTTGCAAAAACACTATT+TGG + Chr5:356712-356731 None:intergenic 25.0%
! AATGGTGCATATACTATAAA+CGG - Chr5:357276-357295 MsG0580024061.01.T01:intron 25.0%
! AATGTGTTGAAATTCAAGTA+TGG - Chr5:356778-356797 MsG0580024061.01.T01:CDS 25.0%
! ATCCTTCTTTCATTAAAAGA+TGG - Chr5:359196-359215 MsG0580024061.01.T01:intron 25.0%
! CATGCATTTAAAAAAAGAGA+TGG - Chr5:357203-357222 MsG0580024061.01.T01:intron 25.0%
! GAAAAATGCATCAAATGTAA+TGG + Chr5:358312-358331 None:intergenic 25.0%
! GAAAGAAGGATAAAATGATA+TGG + Chr5:359187-359206 None:intergenic 25.0%
! GCAATATTGTTATAGACATT+TGG + Chr5:356146-356165 None:intergenic 25.0%
! GTCAAGTCTAATGTTAATTT+CGG - Chr5:356634-356653 MsG0580024061.01.T01:CDS 25.0%
! GTTAAAAAAATGTCCTAACA+AGG + Chr5:357112-357131 None:intergenic 25.0%
! TCAAGTCTAATGTTAATTTC+GGG - Chr5:356635-356654 MsG0580024061.01.T01:CDS 25.0%
! TGGTAATTAAAACCTTAAGT+TGG - Chr5:357929-357948 MsG0580024061.01.T01:intron 25.0%
! TTATTGGATAGAGGTTAAAT+TGG - Chr5:357040-357059 MsG0580024061.01.T01:intron 25.0%
!! AAAGTATATGTATTGGTGAA+TGG - Chr5:356465-356484 MsG0580024061.01.T01:CDS 25.0%
!! AACCATCTTTTAATGAAAGA+AGG + Chr5:359201-359220 None:intergenic 25.0%
!! ACTTGATAACCGAAAAATAA+TGG - Chr5:357485-357504 MsG0580024061.01.T01:intron 25.0%
!! AGGTTAAATTGGTAGATTTT+TGG - Chr5:357051-357070 MsG0580024061.01.T01:intron 25.0%
!! ATAAAATGGGCTTAAATTTC+TGG + Chr5:357590-357609 None:intergenic 25.0%
!! TTACATTTGATGCATTTTTC+TGG - Chr5:358312-358331 MsG0580024061.01.T01:intron 25.0%
!!! AAAACCTTAAGTTGGATTTT+TGG - Chr5:357937-357956 MsG0580024061.01.T01:intron 25.0%
!!! AAACCTTAAGTTGGATTTTT+GGG - Chr5:357938-357957 MsG0580024061.01.T01:intron 25.0%
!!! AGTCATTTTCATGTATCAAT+TGG + Chr5:357995-358014 None:intergenic 25.0%
!!! ATAGTATATGCACCATTTTT+AGG + Chr5:357273-357292 None:intergenic 25.0%
!!! TCTGGTTTTTTTTTTTGCAT+GGG - Chr5:358330-358349 MsG0580024061.01.T01:intron 25.0%
!!! TTCTGGTTTTTTTTTTTGCA+TGG - Chr5:358329-358348 MsG0580024061.01.T01:intron 25.0%
!!! TTGCAAAGTTTTTTTGAACA+AGG - Chr5:356722-356741 MsG0580024061.01.T01:CDS 25.0%
AAAAATTTCTAAGTCTCCAG+CGG + Chr5:358408-358427 None:intergenic 30.0%
AAAAGAGATGGGAATAATTG+AGG - Chr5:357215-357234 MsG0580024061.01.T01:intron 30.0%
AAAATCATACCTCGTATCTA+AGG - Chr5:357801-357820 MsG0580024061.01.T01:intron 30.0%
AATGCATATAGCAATTGAAG+GGG + Chr5:356328-356347 None:intergenic 30.0%
ATTCAAGTATGGAGAATTAG+AGG - Chr5:356789-356808 MsG0580024061.01.T01:CDS 30.0%
ATTGGATTGTCTTCATTTGT+TGG + Chr5:359370-359389 None:intergenic 30.0%
CACTACACAATTTATGACTT+TGG + Chr5:356298-356317 None:intergenic 30.0%
GAAATGCATATAGCAATTGA+AGG + Chr5:356330-356349 None:intergenic 30.0%
TATCAAGTAAAGAAGTCCAA+GGG + Chr5:357473-357492 None:intergenic 30.0%
TTATCAAGTAAAGAAGTCCA+AGG + Chr5:357474-357493 None:intergenic 30.0%
TTCAAGTATGGAGAATTAGA+GGG - Chr5:356790-356809 MsG0580024061.01.T01:CDS 30.0%
TTCCAGAACATCTTCAAATT+CGG + Chr5:359425-359444 None:intergenic 30.0%
TTTATCTTTCCATGTGTCTT+GGG + Chr5:358750-358769 None:intergenic 30.0%
! AAAAGGGAAAAACACTGTTT+TGG + Chr5:358458-358477 None:intergenic 30.0%
! AAACACTATTTGGTTTCATG+AGG + Chr5:356702-356721 None:intergenic 30.0%
! AATTATGTTTGATGACACTC+CGG - Chr5:359387-359406 MsG0580024061.01.T01:intron 30.0%
! TAAGGTCGGGTTTAAAATAT+CGG - Chr5:356612-356631 MsG0580024061.01.T01:CDS 30.0%
! TGTTTTCTTCTTACCTTGTT+AGG - Chr5:357096-357115 MsG0580024061.01.T01:intron 30.0%
! TTTTATCTTTCCATGTGTCT+TGG + Chr5:358751-358770 None:intergenic 30.0%
!! AAATGTTTTGTTCAAAACCG+TGG - Chr5:356968-356987 MsG0580024061.01.T01:intron 30.0%
!! AATGTTTTGTTCAAAACCGT+GGG - Chr5:356969-356988 MsG0580024061.01.T01:intron 30.0%
!! AGATAATGTCGATTCCATTA+AGG - Chr5:358637-358656 MsG0580024061.01.T01:intron 30.0%
!! CTATAAAGGATGGGTTATAT+CGG + Chr5:356672-356691 None:intergenic 30.0%
!! TATAAAGGATGGGTTATATC+GGG + Chr5:356671-356690 None:intergenic 30.0%
!! TCATTCTTCACTTTTGTCTT+CGG + Chr5:358902-358921 None:intergenic 30.0%
!!! ACATTTTTTTAACGGATGGT+AGG - Chr5:357119-357138 MsG0580024061.01.T01:intron 30.0%
!!! TAGGACATTTTTTTAACGGA+TGG - Chr5:357115-357134 MsG0580024061.01.T01:intron 30.0%
!!! TTTTGGTGTTTTTTGGGTTA+TGG + Chr5:358184-358203 None:intergenic 30.0%
AAGAAATGCTATGTTGGAGT+TGG - Chr5:358847-358866 MsG0580024061.01.T01:intron 35.0%
AAGGAAGAACAAGAATGAGT+TGG + Chr5:356506-356525 None:intergenic 35.0%
AATGATATGGGATTAGACCA+AGG + Chr5:359174-359193 None:intergenic 35.0%
ACAATTGGATCAAGAAAGTG+TGG - Chr5:358923-358942 MsG0580024061.01.T01:intron 35.0%
ACATGACTTGACCAATTCTT+CGG - Chr5:359096-359115 MsG0580024061.01.T01:intron 35.0%
AGATGGGAATAATTGAGGTA+TGG - Chr5:357220-357239 MsG0580024061.01.T01:intron 35.0%
AGGGATTAAACATTACAGCA+AGG + Chr5:357454-357473 None:intergenic 35.0%
ATAAAAACGAATTGCTCGGT+TGG - Chr5:358765-358784 MsG0580024061.01.T01:intron 35.0%
ATATCCAAAATGTTGGGAGA+TGG - Chr5:356940-356959 MsG0580024061.01.T01:intron 35.0%
ATCATTAGGAGATCTTGTGA+AGG - Chr5:358824-358843 MsG0580024061.01.T01:intron 35.0%
CAGGTCAGAATCTATGTTAA+TGG - Chr5:357909-357928 MsG0580024061.01.T01:intron 35.0%
CATTAACATAGATTCTGACC+TGG + Chr5:357911-357930 None:intergenic 35.0%
CTGGATTTACGGTTATCATT+AGG - Chr5:358810-358829 MsG0580024061.01.T01:intron 35.0%
GTGTAAGGTGATGAATGAAT+AGG + Chr5:358137-358156 None:intergenic 35.0%
TAAAAACGAATTGCTCGGTT+GGG - Chr5:358766-358785 MsG0580024061.01.T01:intron 35.0%
TATCCAAAATGTTGGGAGAT+GGG - Chr5:356941-356960 MsG0580024061.01.T01:intron 35.0%
TGAAGGAAGAAATGCTATGT+TGG - Chr5:358841-358860 MsG0580024061.01.T01:intron 35.0%
TGCTGTAATGTTTAATCCCT+TGG - Chr5:357454-357473 MsG0580024061.01.T01:intron 35.0%
TGGAAATTGGCCATTCTTAA+TGG - Chr5:358992-359011 MsG0580024061.01.T01:intron 35.0%
TGTTAAACTTGACAGATGAG+AGG + Chr5:356200-356219 None:intergenic 35.0%
TTATGGTATAGCTGTTAGTG+AGG + Chr5:358167-358186 None:intergenic 35.0%
TTTAAATGCATGACAACCAC+TGG + Chr5:357195-357214 None:intergenic 35.0%
TTTCTAACTCCTTAGATACG+AGG + Chr5:357813-357832 None:intergenic 35.0%
! AAAAGCAACATGATTTGCCT+TGG - Chr5:359154-359173 MsG0580024061.01.T01:intron 35.0%
! AACATGGGAGGATGAATTTT+TGG - Chr5:359276-359295 MsG0580024061.01.T01:intron 35.0%
! CAATTGGATCAAGAAAGTGT+GGG - Chr5:358924-358943 MsG0580024061.01.T01:intron 35.0%
! GGAGTGTCATCAAACATAAT+TGG + Chr5:359388-359407 None:intergenic 35.0%
! TATTTGGTTTCATGAGGTGA+AGG + Chr5:356696-356715 None:intergenic 35.0%
! TTCGATCAGCAATGATTTTG+AGG + Chr5:358231-358250 None:intergenic 35.0%
!! AATTCGGTGTTTGCTTTAAC+CGG + Chr5:359409-359428 None:intergenic 35.0%
!! GGATGAATTTTTGGATCAAC+AGG - Chr5:359285-359304 MsG0580024061.01.T01:intron 35.0%
!!! AGGCAAATCATGTTGCTTTT+CGG + Chr5:359154-359173 None:intergenic 35.0%
AAAGTGTGGGTGTTTGTTCA+AGG - Chr5:358937-358956 MsG0580024061.01.T01:intron 40.0%
AAGTATGGAGAATTAGAGGG+AGG - Chr5:356793-356812 MsG0580024061.01.T01:CDS 40.0%
AAGTGGTTTCACCGAAGAAT+TGG + Chr5:359110-359129 None:intergenic 40.0%
ACAAAGGTGAGACAGAGATA+GGG + Chr5:356264-356283 None:intergenic 40.0%
AGCAAATAGGGCTGGATTTA+CGG - Chr5:358799-358818 MsG0580024061.01.T01:intron 40.0%
AGGTGAAGGTCTATAAAGGA+TGG + Chr5:356682-356701 None:intergenic 40.0%
AGGTGATGAATGAATAGGTG+AGG + Chr5:358132-358151 None:intergenic 40.0%
ATCCAAAATGTTGGGAGATG+GGG - Chr5:356942-356961 MsG0580024061.01.T01:intron 40.0%
CACCGAATTTGAAGATGTTC+TGG - Chr5:359420-359439 MsG0580024061.01.T01:CDS 40.0%
CATGAGGTGAAGGTCTATAA+AGG + Chr5:356686-356705 None:intergenic 40.0%
CCTCCCAAAAATCCAACTTA+AGG + Chr5:357944-357963 None:intergenic 40.0%
GAAAATGACTATATTGCCCC+TGG - Chr5:358005-358024 MsG0580024061.01.T01:intron 40.0%
GAATTAGAGGGAGGAATTGA+TGG - Chr5:356802-356821 MsG0580024061.01.T01:CDS 40.0%
GCTTGAAGCCTCAACTTTAA+CGG + Chr5:358690-358709 None:intergenic 40.0%
GGAAGACAATGCTTGGAAAT+TGG - Chr5:358979-358998 MsG0580024061.01.T01:intron 40.0%
GGTGAAGGTCTATAAAGGAT+GGG + Chr5:356681-356700 None:intergenic 40.0%
GTTGTGAACGCCATTAAGAA+TGG + Chr5:359005-359024 None:intergenic 40.0%
TACAAAGGTGAGACAGAGAT+AGG + Chr5:356265-356284 None:intergenic 40.0%
TCGACTAGTGGTCCTAAAAA+TGG - Chr5:357258-357277 MsG0580024061.01.T01:intron 40.0%
TTGTTTGAAAGTCGAAGTCC+AGG - Chr5:357890-357909 MsG0580024061.01.T01:intron 40.0%
! TCTTTTCAACCCAAGACACA+TGG - Chr5:358738-358757 MsG0580024061.01.T01:intron 40.0%
!! AAATAATTAAAGGGCGCCAG+TGG - Chr5:357176-357195 MsG0580024061.01.T01:intron 40.0%
!! AAGTTGGATTTTTGGGAGGA+AGG - Chr5:357945-357964 MsG0580024061.01.T01:intron 40.0%
!! AGACATTTGGTGCTTTGACT+AGG + Chr5:356133-356152 None:intergenic 40.0%
!! ATTTGGTGCTTTGACTAGGA+GGG + Chr5:356129-356148 None:intergenic 40.0%
!! TCTTCATTTGTTGGCTCCTT+TGG + Chr5:359361-359380 None:intergenic 40.0%
!! TGTTGGAGTTGGTTTGTGAA+CGG - Chr5:358858-358877 MsG0580024061.01.T01:intron 40.0%
!!! ATGTTGCTTTTCGGGTTAAC+CGG + Chr5:359145-359164 None:intergenic 40.0%
!!! CCTTAAGTTGGATTTTTGGG+AGG - Chr5:357941-357960 MsG0580024061.01.T01:intron 40.0%
!!! GGAAGGTTGCTTTTTTGACA+AGG - Chr5:357962-357981 MsG0580024061.01.T01:intron 40.0%
!!! GGCAAATCATGTTGCTTTTC+GGG + Chr5:359153-359172 None:intergenic 40.0%
!!! TGGTGAATGGTGACTTGTTT+TGG - Chr5:356478-356497 MsG0580024061.01.T01:CDS 40.0%
AATGACTATATTGCCCCTGG+CGG - Chr5:358008-358027 MsG0580024061.01.T01:intron 45.0%
AGATGGTTCCGTATGTAGCA+GGG - Chr5:359029-359048 MsG0580024061.01.T01:intron 45.0%
CATTGAGCTCAAAGAGAGAC+CGG - Chr5:359330-359349 MsG0580024061.01.T01:intron 45.0%
CCTTCTTGCCGGAAGATTAA+CGG - Chr5:359054-359073 MsG0580024061.01.T01:intron 45.0%
CGAAGTCTCCGTTAAAGTTG+AGG - Chr5:358679-358698 MsG0580024061.01.T01:intron 45.0%
CTACATACGGAACCATCTCA+TGG + Chr5:359027-359046 None:intergenic 45.0%
CTTTGACTAGGAGGGGAAAA+TGG + Chr5:356121-356140 None:intergenic 45.0%
GAATGAATAGGTGAGGTTGC+TGG + Chr5:358125-358144 None:intergenic 45.0%
GCTCAATGTCCATGAGTGTT+TGG + Chr5:359318-359337 None:intergenic 45.0%
GGATCGTTTCCAAACACTCA+TGG - Chr5:359306-359325 MsG0580024061.01.T01:intron 45.0%
TAAAGTGATCCACTCACCCA+CGG + Chr5:356988-357007 None:intergenic 45.0%
TATAGCTGTTAGTGAGGTGG+TGG + Chr5:358161-358180 None:intergenic 45.0%
TCCAAAATGTTGGGAGATGG+GGG - Chr5:356943-356962 MsG0580024061.01.T01:intron 45.0%
TCGTTAGGGAAGACAATGCT+TGG - Chr5:358972-358991 MsG0580024061.01.T01:intron 45.0%
TCTTCGGTGAAACCACTTAG+AGG - Chr5:359112-359131 MsG0580024061.01.T01:intron 45.0%
TGGTATAGCTGTTAGTGAGG+TGG + Chr5:358164-358183 None:intergenic 45.0%
TTAGAGGGAGGAATTGATGG+AGG - Chr5:356805-356824 MsG0580024061.01.T01:CDS 45.0%
TTCAAGCGTCAATTCCGATG+TGG - Chr5:358703-358722 MsG0580024061.01.T01:intron 45.0%
! ACCACTAGTCGAGTTGTTAG+TGG + Chr5:357250-357269 None:intergenic 45.0%
!! CATTTGGTGCTTTGACTAGG+AGG + Chr5:356130-356149 None:intergenic 45.0%
!! GTTTTGGCAGTAGCTATTGC+AGG + Chr5:358442-358461 None:intergenic 45.0%
!! TCATTTGTTGGCTCCTTTGG+TGG + Chr5:359358-359377 None:intergenic 45.0%
!! TTTGGTGCTTTGACTAGGAG+GGG + Chr5:356128-356147 None:intergenic 45.0%
!!! ATAGGTGAGGTTGCTGGTTT+TGG + Chr5:358119-358138 None:intergenic 45.0%
!!! TAGGTGAGGTTGCTGGTTTT+GGG + Chr5:358118-358137 None:intergenic 45.0%
!! AAAAAAAAAGAAAAAAAAAA+GGG + Chr5:358474-358493 None:intergenic 5.0%
!!! TAATAATATTATTTTTTTGA+GGG + Chr5:357416-357435 None:intergenic 5.0%
!!! TTAATAATATTATTTTTTTG+AGG + Chr5:357417-357436 None:intergenic 5.0%
AAATCACAGGAGCGAAGAGG+CGG - Chr5:359252-359271 MsG0580024061.01.T01:intron 50.0%
AACGGAGACTTCGACCTTAG+CGG + Chr5:358672-358691 None:intergenic 50.0%
AGCGGGAGCTTCAACCTTAA+TGG + Chr5:358654-358673 None:intergenic 50.0%
AGGGAGGAATTGATGGAGGT+GGG - Chr5:356809-356828 MsG0580024061.01.T01:CDS 50.0%
AGGTGCGTGGATATGTCGTT+AGG - Chr5:358957-358976 MsG0580024061.01.T01:intron 50.0%
CAGCCCTATTTGCTTGTCGA+CGG + Chr5:358793-358812 None:intergenic 50.0%
CCGTTAATCTTCCGGCAAGA+AGG + Chr5:359057-359076 None:intergenic 50.0%
CGGTGAAACCACTTAGAGGA+CGG - Chr5:359116-359135 MsG0580024061.01.T01:intron 50.0%
CGTCAATTCCGATGTGGACA+CGG - Chr5:358709-358728 MsG0580024061.01.T01:intron 50.0%
GAAATGAGCCGTGTCCACAT+CGG + Chr5:358720-358739 None:intergenic 50.0%
GAGAAATCACAGGAGCGAAG+AGG - Chr5:359249-359268 MsG0580024061.01.T01:intron 50.0%
GAGATGGTTCCGTATGTAGC+AGG - Chr5:359028-359047 MsG0580024061.01.T01:intron 50.0%
GCCACTAACAACTCGACTAG+TGG - Chr5:357246-357265 MsG0580024061.01.T01:intron 50.0%
GGTCCGTCGACAAGCAAATA+GGG - Chr5:358787-358806 MsG0580024061.01.T01:intron 50.0%
GGTGCGTGGATATGTCGTTA+GGG - Chr5:358958-358977 MsG0580024061.01.T01:intron 50.0%
GTCGTCCTCCGTTAATCTTC+CGG + Chr5:359065-359084 None:intergenic 50.0%
TAAGGTTGAAGCTCCCGCTA+AGG - Chr5:358655-358674 MsG0580024061.01.T01:intron 50.0%
TCTTGCCGGAAGATTAACGG+AGG - Chr5:359057-359076 MsG0580024061.01.T01:intron 50.0%
TGGCGTTCACAACCATGAGA+TGG - Chr5:359012-359031 MsG0580024061.01.T01:intron 50.0%
TGTTCAAAACCGTGGGTGAG+TGG - Chr5:356976-356995 MsG0580024061.01.T01:intron 50.0%
TTTCTCCACTCCGTGCATGT+TGG + Chr5:359235-359254 None:intergenic 50.0%
! TAGTGAGGTGGTGGTGTGTA+AGG + Chr5:358152-358171 None:intergenic 50.0%
! TCCCCCATCTCCCAACATTT+TGG + Chr5:356947-356966 None:intergenic 50.0%
!! AGAAGGTGCCCTGCTACATA+CGG + Chr5:359040-359059 None:intergenic 50.0%
!! GAGTTGGTTTGTGAACGGAG+CGG - Chr5:358863-358882 MsG0580024061.01.T01:intron 50.0%
!!! AGGTGAGGTTGCTGGTTTTG+GGG + Chr5:358117-358136 None:intergenic 50.0%
!!! TTGCTTTTCGGGTTAACCGG+AGG + Chr5:359142-359161 None:intergenic 50.0%
ACGGAGACTTCGACCTTAGC+GGG + Chr5:358671-358690 None:intergenic 55.0%
AGCGGCAGTTAACTACCGCT+GGG - Chr5:358363-358382 MsG0580024061.01.T01:intron 55.0%
CCCACTACCTCCAACATGCA+CGG - Chr5:359222-359241 MsG0580024061.01.T01:intron 55.0%
CCGTGCATGTTGGAGGTAGT+GGG + Chr5:359225-359244 None:intergenic 55.0%
CGTCGACAAGCAAATAGGGC+TGG - Chr5:358791-358810 MsG0580024061.01.T01:intron 55.0%
GAGCGGTAGTTAACAACCGC+TGG + Chr5:358083-358102 None:intergenic 55.0%
GAGGGAGGAATTGATGGAGG+TGG - Chr5:356808-356827 MsG0580024061.01.T01:CDS 55.0%
GCACGGAGTGGAGAAATCAC+AGG - Chr5:359239-359258 MsG0580024061.01.T01:intron 55.0%
GGGTCCGTCGACAAGCAAAT+AGG - Chr5:358786-358805 MsG0580024061.01.T01:intron 55.0%
GGGTGTTTGTTCAAGGTGCG+TGG - Chr5:358944-358963 MsG0580024061.01.T01:intron 55.0%
TAACAACCGCTGGATGCCAG+CGG + Chr5:358073-358092 None:intergenic 55.0%
TAACTACCGCTGGGAGTGAG+CGG - Chr5:358372-358391 MsG0580024061.01.T01:intron 55.0%
TACCTCCAACATGCACGGAG+TGG - Chr5:359227-359246 MsG0580024061.01.T01:intron 55.0%
TAGCGGCAGTTAACTACCGC+TGG - Chr5:358362-358381 MsG0580024061.01.T01:intron 55.0%
TCCGTGCATGTTGGAGGTAG+TGG + Chr5:359226-359245 None:intergenic 55.0%
TGCATGGGAACGCGTTGTAG+CGG - Chr5:358345-358364 MsG0580024061.01.T01:intron 55.0%
! AGAGAGACCGGTTCCACCAA+AGG - Chr5:359342-359361 MsG0580024061.01.T01:intron 55.0%
! GTTGGCTCCTTTGGTGGAAC+CGG + Chr5:359352-359371 None:intergenic 55.0%
!!! GGTGAGGTTGCTGGTTTTGG+GGG + Chr5:358116-358135 None:intergenic 55.0%
!!! GTGAGGTTGCTGGTTTTGGG+GGG + Chr5:358115-358134 None:intergenic 55.0%
!!! TGAGGTTGCTGGTTTTGGGG+GGG + Chr5:358114-358133 None:intergenic 55.0%
!!! TGGTTTTGGGGGGGAAACAC+TGG + Chr5:358105-358124 None:intergenic 55.0%
ACCACTTAGAGGACGGCCTC+CGG - Chr5:359123-359142 MsG0580024061.01.T01:intron 60.0%
AGCGGCAGTTAACTACCGCC+AGG + Chr5:358026-358045 None:intergenic 60.0%
CGGCAGTTAACTACCGCCAG+GGG + Chr5:358024-358043 None:intergenic 60.0%
CTCCACTCCGTGCATGTTGG+AGG + Chr5:359232-359251 None:intergenic 60.0%
GAGCGAAGAGGCGGCAACAT+GGG - Chr5:359261-359280 MsG0580024061.01.T01:intron 60.0%
GCGGCAGTTAACTACCGCCA+GGG + Chr5:358025-358044 None:intergenic 60.0%
GGCGGTAGTTAACTGCCGCT+GGG - Chr5:358026-358045 MsG0580024061.01.T01:intron 60.0%
TAACAGCCGCTCACTCCCAG+CGG + Chr5:358381-358400 None:intergenic 60.0%
TAACTGCCGCTGGCATCCAG+CGG - Chr5:358064-358083 MsG0580024061.01.T01:intron 60.0%
TGCCAGCGGCAGTTAACAGC+CGG + Chr5:358059-358078 None:intergenic 60.0%
TGGCGGTAGTTAACTGCCGC+TGG - Chr5:358025-358044 MsG0580024061.01.T01:intron 60.0%
TTGGGGGGGAAACACTGGAG+CGG + Chr5:358100-358119 None:intergenic 60.0%
! GTAGCAGGGCACCTTCTTGC+CGG - Chr5:359043-359062 MsG0580024061.01.T01:intron 60.0%
ACAGCCGGCGTGTTTCCCAG+CGG + Chr5:358044-358063 None:intergenic 65.0%
ACCGGAGGCCGTCCTCTAAG+TGG + Chr5:359127-359146 None:intergenic 65.0%
ACTGCCGCTGGGAAACACGC+CGG - Chr5:358037-358056 MsG0580024061.01.T01:intron 65.0%
CGAAGAGGCGGCAACATGGG+AGG - Chr5:359264-359283 MsG0580024061.01.T01:intron 65.0%
GAGCGGCTGTTAACTGCCGC+TGG - Chr5:358389-358408 MsG0580024061.01.T01:intron 65.0%
GGAGCGAAGAGGCGGCAACA+TGG - Chr5:359260-359279 MsG0580024061.01.T01:intron 65.0%
! CGCCGGCTGTTAACTGCCGC+TGG - Chr5:358054-358073 MsG0580024061.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 356113 359468 356113 ID=MsG0580024061.01;Name=MsG0580024061.01
Chr5 mRNA 356113 359468 356113 ID=MsG0580024061.01.T01;Parent=MsG0580024061.01;Name=MsG0580024061.01.T01;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.5|1|1|2|0|297
Chr5 exon 359405 359468 359405 ID=MsG0580024061.01.T01:exon:85;Parent=MsG0580024061.01.T01
Chr5 exon 356113 356942 356113 ID=MsG0580024061.01.T01:exon:84;Parent=MsG0580024061.01.T01
Chr5 CDS 359405 359468 359405 ID=MsG0580024061.01.T01:cds;Parent=MsG0580024061.01.T01
Chr5 CDS 356113 356942 356113 ID=MsG0580024061.01.T01:cds;Parent=MsG0580024061.01.T01
Gene Sequence

>MsG0580024061.01.T01

ATGAACCATTTTCCCCTCCTAGTCAAAGCACCAAATGTCTATAACAATATTGCAGTTAGAGCTCATAATGTCGATTCCATTAAGGTTGAAGCTCCCGCTAAGGTCGAAGTCTCCGTTAAAGTTGAGGCTTCAAGCGTCAATTCCGATGTGGACACGGCTCATTTCTTTTCAACCCAAGACACATGGAAAGATAAAAACGAATTGCTCGGTTGGGTCCGTCGACAAGCAAATAGGGCTGGATTTACGGTTATCATTAGGAGATCTTGTGAAGGAAGAAATGCTATGTTGGAGTTGGTTTGTGAACGGAGCGGCGAGCACAAAGTACCGAAGACAAAAGTGAAGAATGAAACAATTGGATCAAGAAAGTGTGGGTGTTTGTTCAAGGTGCGTGGATATGTCGTTAGGGAAGACAATGCTTGGAAATTGGCCATTCTTAATGGCGTTCACAACCATGAGATGGTTCCGTATGTAGCAGGGCACCTTCTTGCCGGAAGATTAACGGAGGACGACAAGAAGCTTGTACATGACTTGACCAATTCTTCGGTGAAACCACTTAGAGGACGGCCTCCGGTTAACCCGAAAAGCAACATGATTTGCCTTGGTCTAATCCCATATCATTTTATCCTTCTTTCATTAAAAGATGGTTGCCCACTACCTCCAACATGCACGGAGTGGAGAAATCACAGGAGCGAAGAGGCGGCAACATGGGAGGATGAATTTTTGGATCAACAGGATCGTTTCCAAACACTCATGGACATTGAGCTCAAAGAGAGACCGGTTCCACCAAAGGAGCCAACAAATGAAGACAATCCAATTATGTTTGATGACACTCCGGTTAAAGCAAACACCGAATTTGAAGATGTTCTGGAACATTTAGATGATTTGCTTTATTAG
Protein sequence

>MsG0580024061.01.T01

MNHFPLLVKAPNVYNNIAVRAHNVDSIKVEAPAKVEVSVKVEASSVNSDVDTAHFFSTQDTWKDKNELLGWVRRQANRAGFTVIIRRSCEGRNAMLELVCERSGEHKVPKTKVKNETIGSRKCGCLFKVRGYVVREDNAWKLAILNGVHNHEMVPYVAGHLLAGRLTEDDKKLVHDLTNSSVKPLRGRPPVNPKSNMICLGLIPYHFILLSLKDGCPLPPTCTEWRNHRSEEAATWEDEFLDQQDRFQTLMDIELKERPVPPKEPTNEDNPIMFDDTPVKANTEFEDVLEHLDDLLY*